=> Building science/mdynamix Started : Friday, 14 FEB 2020 at 18:09:56 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.1432.g9cd86-DEVELOPMENT #23: Thu Feb 13 14:43:04 PST 2020 root@sting.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.7-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.7-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" MAKE=gmake XDG_DATA_HOME=/construction/science/mdynamix XDG_CONFIG_HOME=/construction/science/mdynamix HOME=/construction/science/mdynamix TMPDIR="/tmp" PATH=/construction/science/mdynamix/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" XDG_DATA_HOME=/construction/science/mdynamix XDG_CONFIG_HOME=/construction/science/mdynamix HOME=/construction/science/mdynamix TMPDIR="/tmp" PATH=/construction/science/mdynamix/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin " DESTDIR=/construction/science/mdynamix/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- OSREL=5.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/mdynamix" EXAMPLESDIR="share/examples/mdynamix" DATADIR="share/mdynamix" WWWDIR="www/mdynamix" ETCDIR="etc/mdynamix" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/mdynamix DOCSDIR=/usr/local/share/doc/mdynamix EXAMPLESDIR=/usr/local/share/examples/mdynamix WWWDIR=/usr/local/www/mdynamix ETCDIR=/usr/local/etc/mdynamix -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=LiveSystem USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=15 DPORTS_BUILDER= yes DISABLE_LICENSES= yes DEFAULT_VERSIONS= ssl=openssl FORCE_PACKAGE= yes DEVELOPER= yes HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.30.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=32 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500709 OSVERSION=9999999 OSREL=5.7 _OSRELEASE=5.7-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> mdynamix-5.2.8_4 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.12.0_1.txz Installing pkg-1.12.0_1... Extracting pkg-1.12.0_1: .......... done ===> mdynamix-5.2.8_4 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of mdynamix-5.2.8_4 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> Fetching all distfiles required by mdynamix-5.2.8_4 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> Fetching all distfiles required by mdynamix-5.2.8_4 for building => SHA256 Checksum OK for md528.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> Fetching all distfiles required by mdynamix-5.2.8_4 for building ===> Extracting for mdynamix-5.2.8_4 ===> Fetching all distfiles required by mdynamix-5.2.8_4 for building => SHA256 Checksum OK for md528.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for mdynamix-5.2.8_4 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> mdynamix-5.2.8_4 depends on executable: gfortran8 - not found ===> Installing existing package /packages/All/gcc8-8.3.0_3.txz Installing gcc8-8.3.0_3... `-- Installing binutils-2.33.1_2,1... | `-- Installing gettext-runtime-0.20.1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: . done | `-- Extracting gettext-runtime-0.20.1: .......... done `-- Extracting binutils-2.33.1_2,1: .......... done `-- Installing gmp-6.1.2_1... `-- Extracting gmp-6.1.2_1: .......... done `-- Installing mpc-1.1.0_2... | `-- Installing mpfr-4.0.2... | `-- Extracting mpfr-4.0.2: .......... done `-- Extracting mpc-1.1.0_2: ...... done Extracting gcc8-8.3.0_3: .......... done ===== Message from gcc8-8.3.0_3: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> mdynamix-5.2.8_4 depends on executable: gfortran8 - found ===> Returning to build of mdynamix-5.2.8_4 ===> mdynamix-5.2.8_4 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_3.txz Installing gmake-4.2.1_3... Extracting gmake-4.2.1_3: .......... done ===> mdynamix-5.2.8_4 depends on executable: gmake - found ===> Returning to build of mdynamix-5.2.8_4 ===> mdynamix-5.2.8_4 depends on file: /usr/local/bin/as - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- ===> mdynamix-5.2.8_4 depends on shared library: libmpich.so - not found ===> Installing existing package /packages/All/mpich-3.2.1_6.txz Installing mpich-3.2.1_6... `-- Installing hwloc-1.11.11... | `-- Installing libpciaccess-0.16... | | `-- Installing pciids-20200125... | | `-- Extracting pciids-20200125: ..... done | `-- Extracting libpciaccess-0.16: ...... done | `-- Installing libxml2-2.9.10... | `-- Extracting libxml2-2.9.10: .......... done `-- Extracting hwloc-1.11.11: .......... done `-- Installing perl5-5.30.1... `-- Extracting perl5-5.30.1: .......... done Extracting mpich-3.2.1_6: .......... done ===== Message from perl5-5.30.1: -- The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. ===== Message from mpich-3.2.1_6: -- ===> NOTICE: The mpich port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> mdynamix-5.2.8_4 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so) ===> Returning to build of mdynamix-5.2.8_4 -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for mdynamix-5.2.8_4 -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for mdynamix-5.2.8_4 gmake[2]: Entering directory '/construction/science/mdynamix/md528' make -f Makefile.gfortran make -f Makefile.mpi make[3]: Entering directory '/construction/science/mdynamix/md528' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Entering directory '/construction/science/mdynamix/md528' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. gfortran -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o aver.o aver.f mpif77 -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o aver.o aver.f mpif77 -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o cpu_mpi.o cpu_mpi.f mpif77 -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o input.o input.f gfortran -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o cpu_intel.o cpu_intel.f gfortran -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o input.o input.f mpif77 -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o forces.o forces.f gfortran -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o forces.o forces.f mpif77 -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o main.o main.f mpif77 -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o mdee.o mdee.f gfortran -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o mdee.o mdee.f mpif77 -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o mdstep.o mdstep.f gfortran -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o mdstep.o mdstep.f mpif77 -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o restart.o restart.f mpif77 -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o mpi.o mpi.f gfortran -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o scalar.o scalar.f mpif.h:552:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:553:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:558:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:561:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:552:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:553:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:558:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:561:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:552:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:553:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:558:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:561:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement gfortran -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o service.o service.f mpif.h:552:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:553:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:558:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:561:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:552:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:553:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:558:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:561:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:552:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:553:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:558:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:561:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif77 -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o pimd.o pimd.f gfortran -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o setup.o setup.f mpif.h:552:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:553:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:558:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:561:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:552:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:553:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:558:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:561:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:552:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:553:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:558:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:561:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:552:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:553:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:558:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:561:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:552:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:553:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:558:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:561:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:552:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:553:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:558:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:561:11: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif77 -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o setup.o setup.f gfortran -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o util.o util.f mpif77 -O -Wl,-rpath=/usr/local/lib/gcc8 -ffast-math -c -o util.o util.f gfortran -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -o md aver.o cpu_intel.o input.o forces.o main.o mdee.o mdstep.o restart.o scalar.o service.o setup.o util.o /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) make[3]: Leaving directory '/construction/science/mdynamix/md528' mpif77 -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -o mdp aver.o cpu_mpi.o input.o forces.o main.o mdee.o mdstep.o restart.o mpi.o pimd.o service.o setup.o util.o /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) make[3]: Leaving directory '/construction/science/mdynamix/md528' gmake[2]: Leaving directory '/construction/science/mdynamix/md528' -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> mdynamix-5.2.8_4 depends on executable: gfortran8 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for mdynamix-5.2.8_4 ===> Generating temporary packing list install -s -m 555 /construction/science/mdynamix/md528/md /construction/science/mdynamix/stage/usr/local/bin install -s -m 555 /construction/science/mdynamix/md528/mdp /construction/science/mdynamix/stage/usr/local/bin ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for mdynamix-5.2.8_4 file sizes/checksums [2]: . done packing files [2]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Friday, 14 FEB 2020 at 18:10:46 UTC Duration: 00:00:50