=> Building science/dlpoly-classic Started : Friday, 15 NOV 2019 at 00:30:22 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.994.g15c8f-DEVELOPMENT #15: Thu Nov 14 06:52:47 PST 2019 root@sting.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.7-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.7-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- ===> The following configuration options are available for dlpolyclassic-1.8_18: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples GUI=on: Install Java GUI ===> Use 'make config' to modify these settings -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" MAKE=gmake XDG_DATA_HOME=/construction/science/dlpoly-classic XDG_CONFIG_HOME=/construction/science/dlpoly-classic HOME=/construction/science/dlpoly-classic TMPDIR="/tmp" PATH=/construction/science/dlpoly-classic/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" XDG_DATA_HOME=/construction/science/dlpoly-classic XDG_CONFIG_HOME=/construction/science/dlpoly-classic HOME=/construction/science/dlpoly-classic TMPDIR="/tmp" PATH=/construction/science/dlpoly-classic/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/dlpoly-classic/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PORTDOCS="" PORTEXAMPLES="" JAVASHAREDIR="share/java" JAVAJARDIR="share/java/classes" OSREL=5.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/dlpoly" EXAMPLESDIR="share/examples/dlpoly" DATADIR="share/dlpoly" WWWDIR="www/dlpoly" ETCDIR="etc/dlpoly" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/dlpoly DOCSDIR=/usr/local/share/doc/dlpoly EXAMPLESDIR=/usr/local/share/examples/dlpoly WWWDIR=/usr/local/www/dlpoly ETCDIR=/usr/local/etc/dlpoly -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=LiveSystem USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=15 DPORTS_BUILDER= yes DISABLE_LICENSES= yes DEFAULT_VERSIONS= ssl=openssl FORCE_PACKAGE= yes DEVELOPER= yes HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.30.0 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=32 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500709 OSVERSION=9999999 OSREL=5.7 _OSRELEASE=5.7-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> dlpolyclassic-1.8_18 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.12.0.txz Installing pkg-1.12.0... Extracting pkg-1.12.0: .......... done ===> dlpolyclassic-1.8_18 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of dlpolyclassic-1.8_18 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> Fetching all distfiles required by dlpolyclassic-1.8_18 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> Fetching all distfiles required by dlpolyclassic-1.8_18 for building => SHA256 Checksum OK for dl_class_1.8.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> Fetching all distfiles required by dlpolyclassic-1.8_18 for building ===> Extracting for dlpolyclassic-1.8_18 => SHA256 Checksum OK for dl_class_1.8.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for dlpolyclassic-1.8_18 /bin/cp /construction/science/dlpoly-classic/dl_class_1.8/build/MakePAR /construction/science/dlpoly-classic/dl_class_1.8/build/MakeSEQ /construction/science/dlpoly-classic/dl_class_1.8/source /usr/bin/sed -i.bak 's|gfortran|gfortran8|g' /construction/science/dlpoly-classic/dl_class_1.8/source/MakeSEQ /usr/bin/sed -i.bak 's|DLPOLY\.X|dlpoly-classic|g' /construction/science/dlpoly-classic/dl_class_1.8/source/MakeSEQ /usr/bin/sed -i.bak 's|mpif90|/usr/local/mpi/openmpi/bin/mpif90|g' /construction/science/dlpoly-classic/dl_class_1.8/source/MakePAR /usr/bin/sed -i.bak 's|DLPOLY\.X|dlpoly-classic-mpi|g' /construction/science/dlpoly-classic/dl_class_1.8/source/MakePAR -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> dlpolyclassic-1.8_18 depends on file: /usr/local/mpi/openmpi/bin/mpif90 - not found ===> Installing existing package /packages/All/openmpi-1.10.7_7.txz Installing openmpi-1.10.7_7... `-- Installing gcc8-8.3.0_3... | `-- Installing binutils-2.32_1,1... | | `-- Installing gettext-runtime-0.20.1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: . done | | `-- Extracting gettext-runtime-0.20.1: .......... done | `-- Extracting binutils-2.32_1,1: .......... done | `-- Installing gmp-6.1.2_1... | `-- Extracting gmp-6.1.2_1: .......... done | `-- Installing mpc-1.1.0_2... | | `-- Installing mpfr-4.0.2... | | `-- Extracting mpfr-4.0.2: .......... done | `-- Extracting mpc-1.1.0_2: ...... done `-- Extracting gcc8-8.3.0_3: .......... done `-- Installing hwloc-1.11.11... | `-- Installing libpciaccess-0.16... | | `-- Installing pciids-20190725... | | `-- Extracting pciids-20190725: . done | `-- Extracting libpciaccess-0.16: ...... done | `-- Installing libxml2-2.9.9... | `-- Extracting libxml2-2.9.9: .......... done `-- Extracting hwloc-1.11.11: .......... done `-- Installing libevent-2.1.11... | `-- Installing openssl-1.0.2t,1... | `-- Extracting openssl-1.0.2t,1: .......... done `-- Extracting libevent-2.1.11: .......... done `-- Installing libltdl-2.4.6... `-- Extracting libltdl-2.4.6: ......... done Extracting openmpi-1.10.7_7: .......... done ===== Message from gcc8-8.3.0_3: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from openssl-1.0.2t,1: -- Edit /usr/local/openssl/openssl.cnf to fit your needs. ===> dlpolyclassic-1.8_18 depends on file: /usr/local/mpi/openmpi/bin/mpif90 - found ===> Returning to build of dlpolyclassic-1.8_18 ===> dlpolyclassic-1.8_18 depends on file: /usr/local/openjdk8/bin/java - not found ===> Installing existing package /packages/All/openjdk8-8.181.13_1.txz Installing openjdk8-8.181.13_1... `-- Installing alsa-lib-1.1.2_2... `-- Extracting alsa-lib-1.1.2_2: .......... done `-- Installing dejavu-2.37_1... | `-- Installing fontconfig-2.12.6,1... | | `-- Installing expat-2.2.8... | | `-- Extracting expat-2.2.8: .......... done | | `-- Installing freetype2-2.10.1... | | `-- Extracting freetype2-2.10.1: .......... done | `-- Extracting fontconfig-2.12.6,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded | `-- Installing mkfontscale-1.2.1... | | `-- Installing libfontenc-1.1.4... | | `-- Extracting libfontenc-1.1.4: ...... done | `-- Extracting mkfontscale-1.2.1: .... done `-- Extracting dejavu-2.37_1: .......... done `-- Installing giflib-5.1.9... `-- Extracting giflib-5.1.9: .......... done `-- Installing java-zoneinfo-2019.b... `-- Extracting java-zoneinfo-2019.b: .......... done `-- Installing javavmwrapper-2.7.3... `-- Extracting javavmwrapper-2.7.3: .......... done `-- Installing libX11-1.6.8,1... | `-- Installing libXau-1.0.9... | `-- Extracting libXau-1.0.9: .......... done | `-- Installing libXdmcp-1.1.3... | | `-- Installing xorgproto-2019.1... | | `-- Extracting xorgproto-2019.1: .......... done | `-- Extracting libXdmcp-1.1.3: ...... done | `-- Installing libxcb-1.13.1... | | `-- Installing libpthread-stubs-0.4... | | `-- Extracting libpthread-stubs-0.4: . done | `-- Extracting libxcb-1.13.1: .......... done `-- Extracting libX11-1.6.8,1: .......... done `-- Installing libXext-1.3.4,1... `-- Extracting libXext-1.3.4,1: .......... done `-- Installing libXi-1.7.10,1... | `-- Installing libXfixes-5.0.3_2... | `-- Extracting libXfixes-5.0.3_2: ....... done `-- Extracting libXi-1.7.10,1: .......... done `-- Installing libXrender-0.9.10_2... `-- Extracting libXrender-0.9.10_2: ....... done `-- Installing libXt-1.2.0,1... | `-- Installing libICE-1.0.10,1... | `-- Extracting libICE-1.0.10,1: .......... done | `-- Installing libSM-1.2.3,1... | `-- Extracting libSM-1.2.3,1: ........ done `-- Extracting libXt-1.2.0,1: .......... done `-- Installing libXtst-1.2.3_2... `-- Extracting libXtst-1.2.3_2: .......... done Extracting openjdk8-8.181.13_1: .......... done ===== Message from freetype2-2.10.1: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/site/index.html, if documentation was installed). ===== Message from dejavu-2.37_1: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===== Message from openjdk8-8.181.13_1: -- ====================================================================== This OpenJDK implementation requires procfs(5) mounted on /proc. If you have not done it yet, please do the following: mount -t procfs proc /proc To make it permanent, you need the following line in /etc/fstab: proc /proc procfs rw 0 0 ====================================================================== ===> dlpolyclassic-1.8_18 depends on file: /usr/local/openjdk8/bin/java - found ===> Returning to build of dlpolyclassic-1.8_18 ===> dlpolyclassic-1.8_18 depends on executable: gfortran8 - found ===> dlpolyclassic-1.8_18 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_3.txz Installing gmake-4.2.1_3... Extracting gmake-4.2.1_3: .......... done ===> dlpolyclassic-1.8_18 depends on executable: gmake - found ===> Returning to build of dlpolyclassic-1.8_18 ===> dlpolyclassic-1.8_18 depends on file: /usr/local/bin/as - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for dlpolyclassic-1.8_18 -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for dlpolyclassic-1.8_18 (cd /construction/science/dlpoly-classic/dl_class_1.8/source && /bin/cp -f MakeSEQ Makefile && /usr/bin/make gfortran8) /usr/bin/make LD="gfortran8 -o" LDFLAGS="" FC=gfortran8 FFLAGS="-c -O2 -ffast-math" EX=dlpoly-classic BINROOT=../execute seq gfortran8 -c -O2 -ffast-math parse_module.f gfortran8 -c -O2 -ffast-math setup_module.f gfortran8 -c -O2 -ffast-math error_module.f gfortran8 -c -O2 -ffast-math site_module.f gfortran8 -c -O2 -ffast-math config_module.f gfortran8 -c -O2 -ffast-math pair_module.f gfortran8 -c -O2 -ffast-math utility_module.f gfortran8 -c -O2 -ffast-math metafreeze_module.f gfortran8 -c -O2 -ffast-math solvation_module.f gfortran8 -c -O2 -ffast-math tether_module.f gfortran8 -c -O2 -ffast-math vdw_module.f gfortran8 -c -O2 -ffast-math property_module.f gfortran8 -c -O2 -ffast-math rigid_body_module.f gfortran8 -c -O2 -ffast-math angles_module.f gfortran8 -c -O2 -ffast-math bonds_module.f gfortran8 -c -O2 -ffast-math shake_module.f gfortran8 -c -O2 -ffast-math inversion_module.f gfortran8 -c -O2 -ffast-math dihedral_module.f gfortran8 -c -O2 -ffast-math core_shell_module.f gfortran8 -c -O2 -ffast-math exclude_module.f gfortran8 -c -O2 -ffast-math ewald_module.f gfortran8 -c -O2 -ffast-math coulomb_module.f gfortran8 -c -O2 -ffast-math external_field_module.f gfortran8 -c -O2 -ffast-math four_body_module.f gfortran8 -c -O2 -ffast-math hkewald_module.f gfortran8 -c -O2 -ffast-math metal_module.f gfortran8 -c -O2 -ffast-math ensemble_tools_module.f gfortran8 -c -O2 -ffast-math temp_scalers_module.f gfortran8 -c -O2 -ffast-math three_body_module.f gfortran8 -c -O2 -ffast-math spme_module.f gfortran8 -c -O2 -ffast-math tersoff_module.f gfortran8 -c -O2 -ffast-math neu_coul_module.f gfortran8 -c -O2 -ffast-math nlist_builders_module.f gfortran8 -c -O2 -ffast-math forces_module.f gfortran8 -c -O2 -ffast-math lf_motion_module.f gfortran8 -c -O2 -ffast-math lf_rotation1_module.f gfortran8 -c -O2 -ffast-math lf_rotation2_module.f gfortran8 -c -O2 -ffast-math vv_motion_module.f gfortran8 -c -O2 -ffast-math vv_rotation1_module.f gfortran8 -c -O2 -ffast-math vv_rotation2_module.f gfortran8 -c -O2 -ffast-math pmf_module.f gfortran8 -c -O2 -ffast-math integrator_module.f gfortran8 -c -O2 -ffast-math optimiser_module.f gfortran8 -c -O2 -ffast-math hyper_dynamics_module.f gfortran8 -c -O2 -ffast-math driver_module.f gfortran8 -c -O2 -ffast-math define_system_module.f gfortran8 -c -O2 -ffast-math serial.f gfortran8 -c -O2 -ffast-math dlpoly.f gfortran8 -o dlpoly-classic parse_module.o setup_module.o error_module.o site_module.o config_module.o pair_module.o utility_module.o metafreeze_module.o solvation_module.o tether_module.o vdw_module.o property_module.o rigid_body_module.o angles_module.o bonds_module.o shake_module.o inversion_module.o dihedral_module.o core_shell_module.o exclude_module.o ewald_module.o coulomb_module.o external_field_module.o four_body_module.o hkewald_module.o metal_module.o ensemble_tools_module.o temp_scalers_module.o three_body_module.o spme_module.o tersoff_module.o neu_coul_module.o nlist_builders_module.o forces_module.o lf_motion_module.o lf_rotation1_module.o lf_rotation2_module.o vv_motion_module.o vv_rotation1_module.o vv_rotation2_module.o pmf_module.o integrator_module.o optimiser_module.o hyper_dynamics_module.o driver_module.o define_system_module.o serial.o dlpoly.o mv dlpoly-classic ../execute/dlpoly-classic (cd /construction/science/dlpoly-classic/dl_class_1.8/source && /usr/bin/make clean && /bin/cp -f MakePAR Makefile && /usr/bin/make gfortran) rm -f parse_module.o setup_module.o error_module.o site_module.o config_module.o pair_module.o utility_module.o metafreeze_module.o solvation_module.o tether_module.o vdw_module.o property_module.o rigid_body_module.o angles_module.o bonds_module.o shake_module.o inversion_module.o dihedral_module.o core_shell_module.o exclude_module.o ewald_module.o coulomb_module.o external_field_module.o four_body_module.o hkewald_module.o metal_module.o ensemble_tools_module.o temp_scalers_module.o three_body_module.o spme_module.o tersoff_module.o neu_coul_module.o nlist_builders_module.o forces_module.o lf_motion_module.o lf_rotation1_module.o lf_rotation2_module.o vv_motion_module.o vv_rotation1_module.o vv_rotation2_module.o pmf_module.o integrator_module.o optimiser_module.o hyper_dynamics_module.o driver_module.o define_system_module.o serial.o dlpoly.o *.mod /usr/bin/make FC="/usr/local/mpi/openmpi/bin/mpif90" LD="/usr/local/mpi/openmpi/bin/mpif90 -o" LDFLAGS="-O2 -ffast-math" FFLAGS="-c -O2 -ffast-math" EX=dlpoly-classic-mpi BINROOT=../execute par /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math parse_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math setup_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math error_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math site_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math config_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math pair_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math utility_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math metafreeze_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math solvation_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math tether_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math vdw_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math property_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math rigid_body_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math angles_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math bonds_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math shake_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math inversion_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math dihedral_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math core_shell_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math exclude_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math ewald_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math coulomb_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math external_field_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math four_body_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math hkewald_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math metal_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math ensemble_tools_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math temp_scalers_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math three_body_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math spme_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math tersoff_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math neu_coul_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math nlist_builders_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math forces_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math lf_motion_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math lf_rotation1_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math lf_rotation2_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math vv_motion_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math vv_rotation1_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math vv_rotation2_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math pmf_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math integrator_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math optimiser_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math hyper_dynamics_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math driver_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math define_system_module.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math basic_comms.f basic_comms.f:318:17: call gisum(i,1,idum) 1 Warning: Rank mismatch in argument 'aaa' at (1) (rank-1 and scalar) [-Wargument-mismatch] /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math merge_tools.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math pass_tools.f /usr/local/mpi/openmpi/bin/mpif90 -c -O2 -ffast-math dlpoly.f /usr/local/mpi/openmpi/bin/mpif90 -o dlpoly-classic-mpi -O2 -ffast-math parse_module.o setup_module.o error_module.o site_module.o config_module.o pair_module.o utility_module.o metafreeze_module.o solvation_module.o tether_module.o vdw_module.o property_module.o rigid_body_module.o angles_module.o bonds_module.o shake_module.o inversion_module.o dihedral_module.o core_shell_module.o exclude_module.o ewald_module.o coulomb_module.o external_field_module.o four_body_module.o hkewald_module.o metal_module.o ensemble_tools_module.o temp_scalers_module.o three_body_module.o spme_module.o tersoff_module.o neu_coul_module.o nlist_builders_module.o forces_module.o lf_motion_module.o lf_rotation1_module.o lf_rotation2_module.o vv_motion_module.o vv_rotation1_module.o vv_rotation2_module.o pmf_module.o integrator_module.o optimiser_module.o hyper_dynamics_module.o driver_module.o define_system_module.o basic_comms.o merge_tools.o pass_tools.o dlpoly.o mv dlpoly-classic-mpi ../execute/dlpoly-classic-mpi -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> dlpolyclassic-1.8_18 depends on file: /usr/local/mpi/openmpi/bin/mpirun - found ===> dlpolyclassic-1.8_18 depends on file: /usr/local/openjdk8/bin/java - found ===> dlpolyclassic-1.8_18 depends on executable: gfortran8 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for dlpolyclassic-1.8_18 ===> Generating temporary packing list install -s -m 555 /construction/science/dlpoly-classic/dl_class_1.8/execute/dlpoly-classic /construction/science/dlpoly-classic/stage/usr/local/bin install -s -m 555 /construction/science/dlpoly-classic/dl_class_1.8/execute/dlpoly-classic-mpi /construction/science/dlpoly-classic/stage/usr/local/bin install -m 0644 /construction/science/dlpoly-classic/dl_class_1.8/manual/* /construction/science/dlpoly-classic/stage/usr/local/share/doc/dlpoly /bin/cp -R /construction/science/dlpoly-classic/dl_class_1.8/execute /construction/science/dlpoly-classic/stage/usr/local/share/examples/dlpoly /bin/rm -f /construction/science/dlpoly-classic/stage/usr/local/share/examples/dlpoly/execute/dlpoly* install -m 0644 /construction/science/dlpoly-classic/dl_class_1.8/java/GUI.jar /construction/science/dlpoly-classic/stage/usr/local/share/dlpoly install -m 555 /construction/science/dlpoly-classic/dlpoly-gui /construction/science/dlpoly-classic/stage/usr/local/bin ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for dlpolyclassic-1.8_18 file sizes/checksums [13]: . done packing files [13]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Friday, 15 NOV 2019 at 00:47:08 UTC Duration: 00:16:45