=> Building science/coordgenlibs Started : Saturday, 15 FEB 2020 at 16:31:44 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.1432.g9cd86-DEVELOPMENT #23: Thu Feb 13 14:43:04 PST 2020 root@sting.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.7-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.7-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/science/coordgenlibs XDG_CONFIG_HOME=/construction/science/coordgenlibs HOME=/construction/science/coordgenlibs TMPDIR="/tmp" PATH=/construction/science/coordgenlibs/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 CMAKE_PREFIX_PATH="/usr/local" -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/science/coordgenlibs XDG_CONFIG_HOME=/construction/science/coordgenlibs HOME=/construction/science/coordgenlibs TMPDIR="/tmp" PATH=/construction/science/coordgenlibs/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/science/coordgenlibs/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- CMAKE_BUILD_TYPE="release" OSREL=5.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/coordgenlibs" EXAMPLESDIR="share/examples/coordgenlibs" DATADIR="share/coordgenlibs" WWWDIR="www/coordgenlibs" ETCDIR="etc/coordgenlibs" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/coordgenlibs DOCSDIR=/usr/local/share/doc/coordgenlibs EXAMPLESDIR=/usr/local/share/examples/coordgenlibs WWWDIR=/usr/local/www/coordgenlibs ETCDIR=/usr/local/etc/coordgenlibs -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=LiveSystem USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=15 DPORTS_BUILDER= yes DISABLE_LICENSES= yes DEFAULT_VERSIONS= ssl=openssl FORCE_PACKAGE= yes DEVELOPER= yes HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.30.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=32 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500709 OSVERSION=9999999 OSREL=5.7 _OSRELEASE=5.7-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> coordgenlibs-1.3.2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.12.0_1.txz Installing pkg-1.12.0_1... Extracting pkg-1.12.0_1: .......... done ===> coordgenlibs-1.3.2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of coordgenlibs-1.3.2 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- => schrodinger-coordgenlibs-v1.3.2_GH0.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch https://codeload.github.com/schrodinger/coordgenlibs/tar.gz/v1.3.2?dummy=/schrodinger-coordgenlibs-v1.3.2_GH0.tar.gz fetch: https://codeload.github.com/schrodinger/coordgenlibs/tar.gz/v1.3.2?dummy=/schrodinger-coordgenlibs-v1.3.2_GH0.tar.gz: size unknown fetch: https://codeload.github.com/schrodinger/coordgenlibs/tar.gz/v1.3.2?dummy=/schrodinger-coordgenlibs-v1.3.2_GH0.tar.gz: size of remote file is not known schrodinger-coordgenlibs-v1.3.2_GH0.tar.gz 131 kB 456 kBps 00s ===> Fetching all distfiles required by coordgenlibs-1.3.2 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> Fetching all distfiles required by coordgenlibs-1.3.2 for building => SHA256 Checksum OK for schrodinger-coordgenlibs-v1.3.2_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> Fetching all distfiles required by coordgenlibs-1.3.2 for building ===> Extracting for coordgenlibs-1.3.2 => SHA256 Checksum OK for schrodinger-coordgenlibs-v1.3.2_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for coordgenlibs-1.3.2 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> coordgenlibs-1.3.2 depends on file: /usr/local/include/boost/dynamic_bitset.hpp - not found ===> Installing existing package /packages/All/boost-libs-1.72.0.txz Installing boost-libs-1.72.0... `-- Installing icu-65.1,1... `-- Extracting icu-65.1,1: .......... done Extracting boost-libs-1.72.0: .......... done ===== Message from boost-libs-1.72.0: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===> coordgenlibs-1.3.2 depends on file: /usr/local/include/boost/dynamic_bitset.hpp - found ===> Returning to build of coordgenlibs-1.3.2 ===> coordgenlibs-1.3.2 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-3.16.4.txz Installing cmake-3.16.4... `-- Installing curl-7.68.0... | `-- Installing ca_root_nss-3.50... | `-- Extracting ca_root_nss-3.50: ..... done | `-- Installing libnghttp2-1.40.0... | `-- Extracting libnghttp2-1.40.0: ....... done | `-- Installing openssl-1.1.1d,1... | `-- Extracting openssl-1.1.1d,1: .......... done `-- Extracting curl-7.68.0: .......... done `-- Installing expat-2.2.8... `-- Extracting expat-2.2.8: .......... done `-- Installing jsoncpp-1.9.2... `-- Extracting jsoncpp-1.9.2: .......... done `-- Installing libarchive-3.4.0,1... | `-- Installing liblz4-1.9.2_1,1... | `-- Extracting liblz4-1.9.2_1,1: .......... done | `-- Installing lzo2-2.10_1... | `-- Extracting lzo2-2.10_1: .......... done `-- Extracting libarchive-3.4.0,1: .......... done `-- Installing libuv-1.34.2... `-- Extracting libuv-1.34.2: .......... done `-- Installing ncurses-6.1.20190525... `-- Extracting ncurses-6.1.20190525: .......... done `-- Installing rhash-1.3.5... `-- Extracting rhash-1.3.5: .......... done Extracting cmake-3.16.4: .......... done ===== Message from ca_root_nss-3.50: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem ===> coordgenlibs-1.3.2 depends on file: /usr/local/bin/cmake - found ===> Returning to build of coordgenlibs-1.3.2 -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- ===> coordgenlibs-1.3.2 depends on shared library: libmaeparser.so - not found ===> Installing existing package /packages/All/maeparser-1.2.2_1.txz Installing maeparser-1.2.2_1... Extracting maeparser-1.2.2_1: .......... done ===> coordgenlibs-1.3.2 depends on shared library: libmaeparser.so - found (/usr/local/lib/libmaeparser.so) ===> Returning to build of coordgenlibs-1.3.2 -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for coordgenlibs-1.3.2 ===> Performing out-of-source build /bin/mkdir -p /construction/science/coordgenlibs/.build -- The C compiler identification is GNU 8.3.0 -- The CXX compiler identification is GNU 8.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Boost: /usr/local/include (found version "1.72.0") found components: iostreams regex -- Found Boost: /usr/local/include (found version "1.72.0") found components: unit_test_framework filesystem -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_DEBUG CMAKE_C_FLAGS_DEBUG CMAKE_C_FLAGS_RELEASE CMAKE_MODULE_LINKER_FLAGS THREADS_HAVE_PTHREAD_ARG -- Build files have been written to: /construction/science/coordgenlibs/.build -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for coordgenlibs-1.3.2 /usr/local/bin/cmake -S/construction/science/coordgenlibs/coordgenlibs-1.3.2 -B/construction/science/coordgenlibs/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/science/coordgenlibs/.build/CMakeFiles /construction/science/coordgenlibs/.build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all --- CMakeFiles/coordgen.dir/all --- /usr/bin/make -f CMakeFiles/coordgen.dir/build.make CMakeFiles/coordgen.dir/depend --- CMakeFiles/coordgen.dir/depend --- cd /construction/science/coordgenlibs/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/coordgenlibs/coordgenlibs-1.3.2 /construction/science/coordgenlibs/coordgenlibs-1.3.2 /construction/science/coordgenlibs/.build /construction/science/coordgenlibs/.build /construction/science/coordgenlibs/.build/CMakeFiles/coordgen.dir/DependInfo.cmake Scanning dependencies of target coordgen /usr/bin/make -f CMakeFiles/coordgen.dir/build.make CMakeFiles/coordgen.dir/build --- CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o --- --- 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CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o --- /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DIN_COORDGEN -Dcoordgen_EXPORTS -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -std=gnu++11 -o CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o -c /construction/science/coordgenlibs/coordgenlibs-1.3.2/CoordgenFragmenter.cpp --- CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o --- /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DIN_COORDGEN -Dcoordgen_EXPORTS -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -std=gnu++11 -o CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o -c /construction/science/coordgenlibs/coordgenlibs-1.3.2/sketcherMinimizerMarchingSquares.cpp --- CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o --- /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DIN_COORDGEN -Dcoordgen_EXPORTS -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -std=gnu++11 -o CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o -c /construction/science/coordgenlibs/coordgenlibs-1.3.2/sketcherMinimizer.cpp --- CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o --- [ 52%] Building CXX object CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DIN_COORDGEN -Dcoordgen_EXPORTS -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -std=gnu++11 -o CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o -c 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/usr/local/include -fno-strict-aliasing -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -std=gnu++11 -o CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o -c /construction/science/coordgenlibs/coordgenlibs-1.3.2/sketcherMinimizerMolecule.cpp --- CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o --- /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DIN_COORDGEN -Dcoordgen_EXPORTS -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -std=gnu++11 -o CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o -c /construction/science/coordgenlibs/coordgenlibs-1.3.2/sketcherMinimizerFragment.cpp --- CMakeFiles/coordgen.dir/sketcherMinimizerResidue.cpp.o --- /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DIN_COORDGEN -Dcoordgen_EXPORTS -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -std=gnu++11 -o CMakeFiles/coordgen.dir/sketcherMinimizerResidue.cpp.o -c /construction/science/coordgenlibs/coordgenlibs-1.3.2/sketcherMinimizerResidue.cpp --- CMakeFiles/coordgen.dir/sketcherMinimizerRing.cpp.o --- [ 68%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerRing.cpp.o /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DIN_COORDGEN -Dcoordgen_EXPORTS -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -std=gnu++11 -o CMakeFiles/coordgen.dir/sketcherMinimizerRing.cpp.o -c /construction/science/coordgenlibs/coordgenlibs-1.3.2/sketcherMinimizerRing.cpp --- libcoordgen.so.1.3.2 --- [ 73%] Linking CXX shared library libcoordgen.so /usr/local/bin/cmake -E cmake_link_script CMakeFiles/coordgen.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -L/usr/local/lib -shared -Wl,-soname,libcoordgen.so.1 -o libcoordgen.so.1.3.2 CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerAtom.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerResidue.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerResidueInteraction.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerRing.cpp.o /usr/local/lib/libmaeparser.so.1.2.2 /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/bin/cmake -E cmake_symlink_library libcoordgen.so.1.3.2 libcoordgen.so.1 libcoordgen.so [ 78%] Built target coordgen --- example_dir/CMakeFiles/example.dir/all --- --- test/CMakeFiles/test_coordgen.dir/all --- --- example_dir/CMakeFiles/example.dir/all --- /usr/bin/make -f example_dir/CMakeFiles/example.dir/build.make example_dir/CMakeFiles/example.dir/depend --- test/CMakeFiles/test_coordgen.dir/all --- /usr/bin/make -f test/CMakeFiles/test_coordgen.dir/build.make test/CMakeFiles/test_coordgen.dir/depend --- example_dir/CMakeFiles/example.dir/all --- --- example_dir/CMakeFiles/example.dir/depend --- cd /construction/science/coordgenlibs/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/coordgenlibs/coordgenlibs-1.3.2 /construction/science/coordgenlibs/coordgenlibs-1.3.2/example_dir /construction/science/coordgenlibs/.build /construction/science/coordgenlibs/.build/example_dir /construction/science/coordgenlibs/.build/example_dir/CMakeFiles/example.dir/DependInfo.cmake --- test/CMakeFiles/test_coordgen.dir/all --- --- test/CMakeFiles/test_coordgen.dir/depend --- cd /construction/science/coordgenlibs/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/coordgenlibs/coordgenlibs-1.3.2 /construction/science/coordgenlibs/coordgenlibs-1.3.2/test /construction/science/coordgenlibs/.build /construction/science/coordgenlibs/.build/test /construction/science/coordgenlibs/.build/test/CMakeFiles/test_coordgen.dir/DependInfo.cmake --- example_dir/CMakeFiles/example.dir/all --- Scanning dependencies of target example /usr/bin/make -f example_dir/CMakeFiles/example.dir/build.make example_dir/CMakeFiles/example.dir/build --- test/CMakeFiles/test_coordgen.dir/all --- Scanning dependencies of target test_coordgen /usr/bin/make -f 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-DTEST_SAMPLES_PATH=\"/construction/science/coordgenlibs/coordgenlibs-1.3.2/test\" -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=gnu++11 -o CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o -c /construction/science/coordgenlibs/coordgenlibs-1.3.2/test/test_coordgen.cpp --- example_dir/CMakeFiles/example.dir/all --- --- example_dir/example --- [ 94%] Linking CXX executable example cd /construction/science/coordgenlibs/.build/example_dir && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/example.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -L/usr/local/lib CMakeFiles/example.dir/example.cpp.o -o example -Wl,-z,origin,-rpath,/construction/science/coordgenlibs/.build ../libcoordgen.so.1.3.2 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CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerResidue.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerResidueInteraction.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerRing.cpp.o /usr/local/lib/libmaeparser.so.1.2.2 /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libcoordgen.so.1.3.2 CMakeFiles/CMakeRelink.dir/libcoordgen.so.1 CMakeFiles/CMakeRelink.dir/libcoordgen.so Installing the project stripped... /usr/local/bin/cmake -DCMAKE_INSTALL_DO_STRIP=1 -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /construction/science/coordgenlibs/stage/usr/local/lib/libcoordgen.so.1.3.2 -- Installing: /construction/science/coordgenlibs/stage/usr/local/lib/libcoordgen.so.1 -- Installing: /construction/science/coordgenlibs/stage/usr/local/lib/libcoordgen.so -- Installing: /construction/science/coordgenlibs/stage/usr/local/include/coordgen/CoordgenConfig.hpp -- Installing: /construction/science/coordgenlibs/stage/usr/local/include/coordgen/CoordgenFragmentBuilder.h -- Installing: /construction/science/coordgenlibs/stage/usr/local/include/coordgen/CoordgenFragmenter.h -- Installing: /construction/science/coordgenlibs/stage/usr/local/include/coordgen/CoordgenMacrocycleBuilder.h -- Installing: /construction/science/coordgenlibs/stage/usr/local/include/coordgen/CoordgenMinimizer.h -- Installing: /construction/science/coordgenlibs/stage/usr/local/include/coordgen/sketcherMinimizerAtom.h -- Installing: /construction/science/coordgenlibs/stage/usr/local/include/coordgen/sketcherMinimizerBendInteraction.h -- Installing: /construction/science/coordgenlibs/stage/usr/local/include/coordgen/sketcherMinimizerBond.h -- Installing: /construction/science/coordgenlibs/stage/usr/local/include/coordgen/sketcherMinimizerClashInteraction.h -- Installing: /construction/science/coordgenlibs/stage/usr/local/include/coordgen/sketcherMinimizerEZConstrainInteraction.h -- Installing: /construction/science/coordgenlibs/stage/usr/local/include/coordgen/sketcherMinimizerFragment.h -- Installing: /construction/science/coordgenlibs/stage/usr/local/include/coordgen/sketcherMinimizer.h -- Installing: /construction/science/coordgenlibs/stage/usr/local/include/coordgen/sketcherMinimizerInteraction.h -- Installing: /construction/science/coordgenlibs/stage/usr/local/include/coordgen/sketcherMinimizerMarchingSquares.h -- Installing: /construction/science/coordgenlibs/stage/usr/local/include/coordgen/sketcherMinimizerMaths.h -- Installing: /construction/science/coordgenlibs/stage/usr/local/include/coordgen/sketcherMinimizerMolecule.h -- Installing: /construction/science/coordgenlibs/stage/usr/local/include/coordgen/sketcherMinimizerResidue.h -- Installing: /construction/science/coordgenlibs/stage/usr/local/include/coordgen/sketcherMinimizerResidueInteraction.h -- Installing: /construction/science/coordgenlibs/stage/usr/local/include/coordgen/sketcherMinimizerRing.h -- Installing: /construction/science/coordgenlibs/stage/usr/local/include/coordgen/sketcherMinimizerStretchInteraction.h -- Installing: /construction/science/coordgenlibs/stage/usr/local/share/coordgen/templates.mae -- Installing: /construction/science/coordgenlibs/stage/usr/local/lib/cmake/coordgen-config.cmake -- Installing: /construction/science/coordgenlibs/stage/usr/local/lib/cmake/coordgen-config-release.cmake ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/libcoordgen.so.1.3.2 is linked to /usr/local/lib/libboost_iostreams.so.1.72.0 from devel/boost-libs but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libboost_iostreams.so:devel/boost-libs Error: /usr/local/lib/libcoordgen.so.1.3.2 is linked to /usr/local/lib/libboost_regex.so.1.72.0 from devel/boost-libs but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libboost_regex.so:devel/boost-libs Error: /usr/local/lib/libcoordgen.so.1.3.2 is linked to /usr/local/lib/libicudata.so.65 from devel/icu but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libicudata.so:devel/icu Error: /usr/local/lib/libcoordgen.so.1.3.2 is linked to /usr/local/lib/libicui18n.so.65 from devel/icu but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libicui18n.so:devel/icu Error: /usr/local/lib/libcoordgen.so.1.3.2 is linked to /usr/local/lib/libicuuc.so.65 from devel/icu but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libicuuc.so:devel/icu Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for coordgenlibs-1.3.2 file sizes/checksums [26]: . done packing files [26]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Saturday, 15 FEB 2020 at 16:33:38 UTC Duration: 00:01:54