=> Building math/py-scikit-umfpack@py37 Started : Saturday, 15 FEB 2020 at 15:29:41 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.1432.g9cd86-DEVELOPMENT #23: Thu Feb 13 14:43:04 PST 2020 root@sting.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.7-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.7-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PYTHON="/usr/local/bin/python3.7" XDG_DATA_HOME=/construction/math/py-scikit-umfpack XDG_CONFIG_HOME=/construction/math/py-scikit-umfpack HOME=/construction/math/py-scikit-umfpack TMPDIR="/tmp" PATH=/construction/math/py-scikit-umfpack/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/math/py-scikit-umfpack XDG_CONFIG_HOME=/construction/math/py-scikit-umfpack HOME=/construction/math/py-scikit-umfpack TMPDIR="/tmp" PATH=/construction/math/py-scikit-umfpack/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/math/py-scikit-umfpack/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PYTHON_INCLUDEDIR=include/python3.7m PYTHON_LIBDIR=lib/python3.7 PYTHON_PLATFORM=dragonfly5 PYTHON_SITELIBDIR=lib/python3.7/site-packages PYTHON_SUFFIX=37 PYTHON_VER=3.7 PYTHON_VERSION=python3.7 PYTHON2="@comment " PYTHON3="" OSREL=5.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/scikit-umfpack" EXAMPLESDIR="share/examples/scikit-umfpack" DATADIR="share/scikit-umfpack" WWWDIR="www/scikit-umfpack" ETCDIR="etc/scikit-umfpack" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/scikit-umfpack DOCSDIR=/usr/local/share/doc/scikit-umfpack EXAMPLESDIR=/usr/local/share/examples/scikit-umfpack WWWDIR=/usr/local/www/scikit-umfpack ETCDIR=/usr/local/etc/scikit-umfpack -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=LiveSystem USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=15 DPORTS_BUILDER= yes DISABLE_LICENSES= yes DEFAULT_VERSIONS= ssl=openssl FORCE_PACKAGE= yes DEVELOPER= yes HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.30.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=32 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500709 OSVERSION=9999999 OSREL=5.7 _OSRELEASE=5.7-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py37-scikit-umfpack-0.3.2_3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.12.0_1.txz Installing pkg-1.12.0_1... Extracting pkg-1.12.0_1: .......... done ===> py37-scikit-umfpack-0.3.2_3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py37-scikit-umfpack-0.3.2_3 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- => scikit-umfpack-0.3.2.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch https://files.pythonhosted.org/packages/source/s/scikit-umfpack/scikit-umfpack-0.3.2.tar.gz scikit-umfpack-0.3.2.tar.gz 24 kB 94 MBps 00s ===> Fetching all distfiles required by py37-scikit-umfpack-0.3.2_3 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py37-scikit-umfpack-0.3.2_3 for building => SHA256 Checksum OK for scikit-umfpack-0.3.2.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py37-scikit-umfpack-0.3.2_3 for building ===> Extracting for py37-scikit-umfpack-0.3.2_3 => SHA256 Checksum OK for scikit-umfpack-0.3.2.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py37-scikit-umfpack-0.3.2_3 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py37-scikit-umfpack-0.3.2_3 depends on package: py37-numpy>=1.15,1<1.19,1 - not found ===> Installing existing package /packages/All/py37-numpy-1.16.5_4,1.txz Installing py37-numpy-1.16.5_4,1... `-- Installing gcc8-8.3.0_3... | `-- Installing binutils-2.33.1_2,1... | | `-- Installing gettext-runtime-0.20.1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: . done | | `-- Extracting gettext-runtime-0.20.1: .......... done | `-- Extracting binutils-2.33.1_2,1: .......... done | `-- Installing gmp-6.1.2_1... | `-- Extracting gmp-6.1.2_1: .......... done | `-- Installing mpc-1.1.0_2... | | `-- Installing mpfr-4.0.2... | | `-- Extracting mpfr-4.0.2: .......... done | `-- Extracting mpc-1.1.0_2: ...... done `-- Extracting gcc8-8.3.0_3: .......... done `-- Installing openblas-0.3.7_2,1... `-- Extracting openblas-0.3.7_2,1: .......... done `-- Installing py37-setuptools-44.0.0... | `-- Installing python37-3.7.6... | | `-- Installing expat-2.2.8... | | `-- Extracting expat-2.2.8: .......... done | | `-- Installing libffi-3.2.1_3... | | `-- Extracting libffi-3.2.1_3: .......... done | | `-- Installing ncurses-6.1.20190525... | | `-- Extracting ncurses-6.1.20190525: .......... done | | `-- Installing openssl-1.1.1d,1... | | `-- Extracting openssl-1.1.1d,1: .......... done | | `-- Installing readline-8.0.1... | | `-- Extracting readline-8.0.1: .......... done | `-- Extracting python37-3.7.6: .......... done `-- Extracting py37-setuptools-44.0.0: .......... done `-- Installing suitesparse-5.4.0_5... | `-- Installing metis-5.1.0_8... | `-- Extracting metis-5.1.0_8: .......... done | `-- Installing tbb-2020.1... | `-- Extracting tbb-2020.1: .......... done `-- Extracting suitesparse-5.4.0_5: .......... done Extracting py37-numpy-1.16.5_4,1: .......... done ===== Message from gcc8-8.3.0_3: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from python37-3.7.6: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 ===> py37-scikit-umfpack-0.3.2_3 depends on package: py37-numpy>=1.15,1<1.19,1 - found ===> Returning to build of py37-scikit-umfpack-0.3.2_3 ===> py37-scikit-umfpack-0.3.2_3 depends on package: py37-scipy>0 - not found ===> Installing existing package /packages/All/py37-scipy-1.2.2_1.txz Installing py37-scipy-1.2.2_1... Extracting py37-scipy-1.2.2_1: .......... done ===> py37-scikit-umfpack-0.3.2_3 depends on package: py37-scipy>0 - found ===> Returning to build of py37-scikit-umfpack-0.3.2_3 ===> py37-scikit-umfpack-0.3.2_3 depends on executable: swig3.0 - not found ===> Installing existing package /packages/All/swig30-3.0.12.txz Installing swig30-3.0.12... `-- Installing lua52-5.2.4... | `-- Installing libedit-3.1.20191211,1... | `-- Extracting libedit-3.1.20191211,1: .......... done `-- Extracting lua52-5.2.4: ......... done `-- Installing pcre-8.43_2... `-- Extracting pcre-8.43_2: .......... done Extracting swig30-3.0.12: .......... done ===> py37-scikit-umfpack-0.3.2_3 depends on executable: swig3.0 - found ===> Returning to build of py37-scikit-umfpack-0.3.2_3 ===> py37-scikit-umfpack-0.3.2_3 depends on executable: cython-3.7 - not found ===> Installing existing package /packages/All/py37-cython-0.29.13_1.txz Installing py37-cython-0.29.13_1... Extracting py37-cython-0.29.13_1: .......... done ===> py37-scikit-umfpack-0.3.2_3 depends on executable: cython-3.7 - found ===> Returning to build of py37-scikit-umfpack-0.3.2_3 ===> py37-scikit-umfpack-0.3.2_3 depends on package: py37-setuptools>0 - found ===> py37-scikit-umfpack-0.3.2_3 depends on file: /usr/local/bin/python3.7 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- ===> py37-scikit-umfpack-0.3.2_3 depends on shared library: libumfpack.so - found (/usr/local/lib/libumfpack.so) -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for py37-scikit-umfpack-0.3.2_3 umfpack_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp5pe57rpr/tmp creating /tmp/tmp5pe57rpr/tmp/tmp5pe57rpr compile options: '-MMD -MF /tmp/tmp5pe57rpr/file.c.d -c' cc: /tmp/tmp5pe57rpr/file.c amd_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpzsilciia/tmp creating /tmp/tmpzsilciia/tmp/tmpzsilciia compile options: '-MMD -MF /tmp/tmpzsilciia/file.c.d -c' cc: /tmp/tmpzsilciia/file.c customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpyob_b6ve/tmp creating /tmp/tmpyob_b6ve/tmp/tmpyob_b6ve compile options: '-MMD -MF /tmp/tmpyob_b6ve/file.c.d -c' cc: /tmp/tmpyob_b6ve/file.c FOUND: libraries = ['amd', 'amd'] library_dirs = ['/usr/local/lib'] include_dirs = ['/usr/local/include/suitesparse'] define_macros = [('SCIPY_AMD_H', None)] swig_opts = ['-I/usr/local/include/suitesparse'] customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmppma0gf4n/tmp creating /tmp/tmppma0gf4n/tmp/tmppma0gf4n compile options: '-MMD -MF /tmp/tmppma0gf4n/file.c.d -c' cc: /tmp/tmppma0gf4n/file.c FOUND: libraries = ['umfpack', 'amd', 'amd', 'umfpack'] library_dirs = ['/usr/local/lib'] include_dirs = ['/usr/local/include/suitesparse'] define_macros = [('SCIPY_UMFPACK_H', None), ('SCIPY_AMD_H', None)] swig_opts = ['-I/usr/local/include/suitesparse', '-I/usr/local/include/suitesparse'] blas_opt_info: blas_mkl_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmptpjqr8vb/tmp creating /tmp/tmptpjqr8vb/tmp/tmptpjqr8vb compile options: '-MMD -MF /tmp/tmptpjqr8vb/file.c.d -c' cc: /tmp/tmptpjqr8vb/file.c libraries mkl_rt not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE blis_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpzb63er8a/tmp creating /tmp/tmpzb63er8a/tmp/tmpzb63er8a compile options: '-MMD -MF /tmp/tmpzb63er8a/file.c.d -c' cc: /tmp/tmpzb63er8a/file.c libraries blis not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE atlas_3_10_blas_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp7wu0vhmy/tmp creating /tmp/tmp7wu0vhmy/tmp/tmp7wu0vhmy compile options: '-MMD -MF /tmp/tmp7wu0vhmy/file.c.d -c' cc: /tmp/tmp7wu0vhmy/file.c libraries tatlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE atlas_3_10_blas_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpd4ywrxfr/tmp creating /tmp/tmpd4ywrxfr/tmp/tmpd4ywrxfr compile options: '-MMD -MF /tmp/tmpd4ywrxfr/file.c.d -c' cc: /tmp/tmpd4ywrxfr/file.c libraries satlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE atlas_blas_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpc4m6wbyj/tmp creating /tmp/tmpc4m6wbyj/tmp/tmpc4m6wbyj compile options: '-MMD -MF /tmp/tmpc4m6wbyj/file.c.d -c' cc: /tmp/tmpc4m6wbyj/file.c libraries ptf77blas,ptcblas,atlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE atlas_blas_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmptth77q15/tmp creating /tmp/tmptth77q15/tmp/tmptth77q15 compile options: '-MMD -MF /tmp/tmptth77q15/file.c.d -c' cc: /tmp/tmptth77q15/file.c libraries f77blas,cblas,atlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE accelerate_info: NOT AVAILABLE blas_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp2ioda5jt/tmp creating /tmp/tmp2ioda5jt/tmp/tmp2ioda5jt compile options: '-MMD -MF /tmp/tmp2ioda5jt/file.c.d -c' cc: /tmp/tmp2ioda5jt/file.c libraries blas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE blas_src_info: NOT AVAILABLE NOT AVAILABLE running config setup.py:56: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses import imp /usr/local/lib/python3.7/site-packages/numpy/distutils/system_info.py:641: UserWarning: Atlas (http://math-atlas.sourceforge.net/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [atlas]) or by setting the ATLAS environment variable. self.calc_info() /usr/local/lib/python3.7/site-packages/numpy/distutils/system_info.py:641: UserWarning: Blas (http://www.netlib.org/blas/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [blas]) or by setting the BLAS environment variable. self.calc_info() /usr/local/lib/python3.7/site-packages/numpy/distutils/system_info.py:1951: UserWarning: Specified path /usr/local/src is invalid. pre_dirs = system_info.get_paths(self, section, key) /usr/local/lib/python3.7/site-packages/numpy/distutils/system_info.py:641: UserWarning: Blas (http://www.netlib.org/blas/) sources not found. Directories to search for the sources can be specified in the numpy/distutils/site.cfg file (section [blas_src]) or by setting the BLAS_SRC environment variable. self.calc_info() -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py37-scikit-umfpack-0.3.2_3 umfpack_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp40y676tu/tmp creating /tmp/tmp40y676tu/tmp/tmp40y676tu compile options: '-MMD -MF /tmp/tmp40y676tu/file.c.d -c' cc: /tmp/tmp40y676tu/file.c amd_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp7h1cjtdv/tmp creating /tmp/tmp7h1cjtdv/tmp/tmp7h1cjtdv compile options: '-MMD -MF /tmp/tmp7h1cjtdv/file.c.d -c' cc: /tmp/tmp7h1cjtdv/file.c customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpw40vrgnk/tmp creating /tmp/tmpw40vrgnk/tmp/tmpw40vrgnk compile options: '-MMD -MF /tmp/tmpw40vrgnk/file.c.d -c' cc: /tmp/tmpw40vrgnk/file.c FOUND: libraries = ['amd', 'amd'] library_dirs = ['/usr/local/lib'] include_dirs = ['/usr/local/include/suitesparse'] define_macros = [('SCIPY_AMD_H', None)] swig_opts = ['-I/usr/local/include/suitesparse'] customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp9jw3dtuc/tmp creating /tmp/tmp9jw3dtuc/tmp/tmp9jw3dtuc compile options: '-MMD -MF /tmp/tmp9jw3dtuc/file.c.d -c' cc: /tmp/tmp9jw3dtuc/file.c FOUND: libraries = ['umfpack', 'amd', 'amd', 'umfpack'] library_dirs = ['/usr/local/lib'] include_dirs = ['/usr/local/include/suitesparse'] define_macros = [('SCIPY_UMFPACK_H', None), ('SCIPY_AMD_H', None)] swig_opts = ['-I/usr/local/include/suitesparse', '-I/usr/local/include/suitesparse'] blas_opt_info: blas_mkl_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmphrxbcwi6/tmp creating /tmp/tmphrxbcwi6/tmp/tmphrxbcwi6 compile options: '-MMD -MF /tmp/tmphrxbcwi6/file.c.d -c' cc: /tmp/tmphrxbcwi6/file.c libraries mkl_rt not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE blis_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmps8qi2dix/tmp creating /tmp/tmps8qi2dix/tmp/tmps8qi2dix compile options: '-MMD -MF /tmp/tmps8qi2dix/file.c.d -c' cc: /tmp/tmps8qi2dix/file.c libraries blis not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE atlas_3_10_blas_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpdw2y8w0x/tmp creating /tmp/tmpdw2y8w0x/tmp/tmpdw2y8w0x compile options: '-MMD -MF /tmp/tmpdw2y8w0x/file.c.d -c' cc: /tmp/tmpdw2y8w0x/file.c libraries tatlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE atlas_3_10_blas_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpu93a1fuf/tmp creating /tmp/tmpu93a1fuf/tmp/tmpu93a1fuf compile options: '-MMD -MF /tmp/tmpu93a1fuf/file.c.d -c' cc: /tmp/tmpu93a1fuf/file.c libraries satlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE atlas_blas_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpcn_z9r2y/tmp creating /tmp/tmpcn_z9r2y/tmp/tmpcn_z9r2y compile options: '-MMD -MF /tmp/tmpcn_z9r2y/file.c.d -c' cc: /tmp/tmpcn_z9r2y/file.c libraries ptf77blas,ptcblas,atlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE atlas_blas_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpkwrfjqag/tmp creating /tmp/tmpkwrfjqag/tmp/tmpkwrfjqag compile options: '-MMD -MF /tmp/tmpkwrfjqag/file.c.d -c' cc: /tmp/tmpkwrfjqag/file.c libraries f77blas,cblas,atlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE accelerate_info: NOT AVAILABLE blas_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpi3b5kbfu/tmp creating /tmp/tmpi3b5kbfu/tmp/tmpi3b5kbfu compile options: '-MMD -MF /tmp/tmpi3b5kbfu/file.c.d -c' cc: /tmp/tmpi3b5kbfu/file.c libraries blas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE blas_src_info: NOT AVAILABLE NOT AVAILABLE running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "scikits.umfpack.__umfpack" sources creating build creating build/src.dragonfly-5.7-SYNTH-x86_64-3.7 creating build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits creating build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack adding 'scikits/umfpack/umfpack.i' to sources. swig: scikits/umfpack/umfpack.i swig -python -I/usr/local/include/suitesparse -I/usr/local/include/suitesparse -I/usr/local/include/suitesparse -o build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c -outdir build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack scikits/umfpack/umfpack.i building data_files sources build_src: building npy-pkg config files running build_py creating build/lib.dragonfly-5.7-SYNTH-x86_64-3.7 creating build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/scikits creating build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack copying scikits/umfpack/version.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack copying scikits/umfpack/umfpack.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack copying scikits/umfpack/setup.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack copying scikits/umfpack/_umfpack.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack copying scikits/umfpack/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack copying scikits/umfpack/interface.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack copying build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack running build_ext customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpvbuogbyk/tmp creating /tmp/tmpvbuogbyk/tmp/tmpvbuogbyk compile options: '-MMD -MF /tmp/tmpvbuogbyk/file.c.d -c' cc: /tmp/tmpvbuogbyk/file.c customize UnixCCompiler using build_ext building 'scikits.umfpack.__umfpack' extension compiling C sources C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/build creating build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/build/src.dragonfly-5.7-SYNTH-x86_64-3.7 creating build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits creating build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack compile options: '-DSCIPY_UMFPACK_H -DSCIPY_AMD_H -I/usr/local/include/suitesparse -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c' cc: build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3028: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c: In function '_wrap_umfpack_dl_solve': build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3485:52: warning: passing argument 2 of 'umfpack_dl_solve' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_solve(arg1,(long long const (*))arg2,(long long const (*))arg3,(double const (*))arg4,arg5,(double const (*))arg6,arg7,(double const (*))arg8,arg9); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:48, from build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_solve.h:26:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ap [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3485:78: warning: passing argument 3 of 'umfpack_dl_solve' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_solve(arg1,(long long const (*))arg2,(long long const (*))arg3,(double const (*))arg4,arg5,(double const (*))arg6,arg7,(double const (*))arg8,arg9); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:48, from build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_solve.h:27:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ai [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c: In function '_wrap_umfpack_zl_solve': build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3649:52: warning: passing argument 2 of 'umfpack_zl_solve' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_solve(arg1,(long long const (*))arg2,(long long const (*))arg3,(double const (*))arg4,(double const (*))arg5,arg6,arg7,(double const (*))arg8,(double const (*))arg9,arg10,(double const (*))arg11,arg12); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:48, from build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_solve.h:52:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ap [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3649:78: warning: passing argument 3 of 'umfpack_zl_solve' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_solve(arg1,(long long const (*))arg2,(long long const (*))arg3,(double const (*))arg4,(double const (*))arg5,arg6,arg7,(double const (*))arg8,(double const (*))arg9,arg10,(double const (*))arg11,arg12); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:48, from build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_solve.h:53:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ai [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c: In function '_wrap_umfpack_dl_triplet_to_col': build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3921:71: warning: passing argument 4 of 'umfpack_dl_triplet_to_col' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_triplet_to_col(arg1,arg2,arg3,(long long const (*))arg4,(long long const (*))arg5,(double const (*))arg6,arg7,arg8,arg9,arg10); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:58, from build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_triplet_to_col.h:29:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ti [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3921:97: warning: passing argument 5 of 'umfpack_dl_triplet_to_col' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_triplet_to_col(arg1,arg2,arg3,(long long const (*))arg4,(long long const (*))arg5,(double const (*))arg6,arg7,arg8,arg9,arg10); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:58, from build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_triplet_to_col.h:30:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Tj [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c: In function '_wrap_umfpack_zl_triplet_to_col': build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:4153:71: warning: passing argument 4 of 'umfpack_zl_triplet_to_col' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_triplet_to_col(arg1,arg2,arg3,(long long const (*))arg4,(long long const (*))arg5,(double const (*))arg6,(double const (*))arg7,arg8,arg9,arg10,arg11,arg12); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:58, from build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_triplet_to_col.h:57:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ti [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:4153:97: warning: passing argument 5 of 'umfpack_zl_triplet_to_col' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_triplet_to_col(arg1,arg2,arg3,(long long const (*))arg4,(long long const (*))arg5,(double const (*))arg6,(double const (*))arg7,arg8,arg9,arg10,arg11,arg12); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:58, from build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_triplet_to_col.h:58:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Tj [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c: In function '_wrap_umfpack_dl_col_to_triplet': build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:4223:61: warning: passing argument 2 of 'umfpack_dl_col_to_triplet' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_col_to_triplet(arg1,(long long const (*))arg2,arg3); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:59, from build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_col_to_triplet.h:20:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ap [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c: In function '_wrap_umfpack_zl_col_to_triplet': build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:4293:61: warning: passing argument 2 of 'umfpack_zl_col_to_triplet' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_col_to_triplet(arg1,(long long const (*))arg2,arg3); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:59, from build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_col_to_triplet.h:34:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ap [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c: In function '_wrap_umfpack_dl_transpose': build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:4469:61: warning: passing argument 3 of 'umfpack_dl_transpose' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_transpose(arg1,arg2,(long long const (*))arg3,(long long const (*))arg4,(double const (*))arg5,(long long const (*))arg6,(long long const (*))arg7,arg8,arg9,arg10); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:60, from build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_transpose.h:28:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ap [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:4469:87: warning: passing argument 4 of 'umfpack_dl_transpose' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_transpose(arg1,arg2,(long long const (*))arg3,(long long const (*))arg4,(double const (*))arg5,(long long const (*))arg6,(long long const (*))arg7,arg8,arg9,arg10); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:60, from build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_transpose.h:29:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ai [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:4469:136: warning: passing argument 6 of 'umfpack_dl_transpose' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_transpose(arg1,arg2,(long long const (*))arg3,(long long const (*))arg4,(double const (*))arg5,(long long const (*))arg6,(long long const (*))arg7,arg8,arg9,arg10); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:60, from build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_transpose.h:31:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long P [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:4469:162: warning: passing argument 7 of 'umfpack_dl_transpose' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_transpose(arg1,arg2,(long long const (*))arg3,(long long const (*))arg4,(double const (*))arg5,(long long const (*))arg6,(long long const (*))arg7,arg8,arg9,arg10); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:60, from build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_transpose.h:32:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Q [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c: In function '_wrap_umfpack_zl_transpose': build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:4687:61: warning: passing argument 3 of 'umfpack_zl_transpose' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_transpose(arg1,arg2,(long long const (*))arg3,(long long const (*))arg4,(double const (*))arg5,(double const (*))arg6,(long long const (*))arg7,(long long const (*))arg8,arg9,arg10,arg11,arg12,arg13); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:60, from build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_transpose.h:57:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ap [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:4687:87: warning: passing argument 4 of 'umfpack_zl_transpose' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_transpose(arg1,arg2,(long long const (*))arg3,(long long const (*))arg4,(double const (*))arg5,(double const (*))arg6,(long long const (*))arg7,(long long const (*))arg8,arg9,arg10,arg11,arg12,arg13); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:60, from build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_transpose.h:58:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ai [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:4687:159: warning: passing argument 7 of 'umfpack_zl_transpose' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_transpose(arg1,arg2,(long long const (*))arg3,(long long const (*))arg4,(double const (*))arg5,(double const (*))arg6,(long long const (*))arg7,(long long const (*))arg8,arg9,arg10,arg11,arg12,arg13); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:60, from build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_transpose.h:60:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long P [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:4687:185: warning: passing argument 8 of 'umfpack_zl_transpose' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_transpose(arg1,arg2,(long long const (*))arg3,(long long const (*))arg4,(double const (*))arg5,(double const (*))arg6,(long long const (*))arg7,(long long const (*))arg8,arg9,arg10,arg11,arg12,arg13); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:60, from build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_transpose.h:61:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Q [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~ build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c: In function '_wrap_umfpack_dl_symbolic': build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:5362:60: warning: passing argument 3 of 'umfpack_dl_symbolic' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_symbolic(arg1,arg2,(long long const (*))arg3,(long long const (*))arg4,(double const (*))arg5,arg6,(double const (*))arg7,arg8); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:46, from build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_symbolic.h:26:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ap [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:5362:86: warning: passing argument 4 of 'umfpack_dl_symbolic' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_symbolic(arg1,arg2,(long long const (*))arg3,(long long const (*))arg4,(double const (*))arg5,arg6,(double const (*))arg7,arg8); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:46, from build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_symbolic.h:27:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ai [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c: In function '_wrap_umfpack_zl_symbolic': build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:5502:60: warning: passing argument 3 of 'umfpack_zl_symbolic' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_symbolic(arg1,arg2,(long long const (*))arg3,(long long const (*))arg4,(double const (*))arg5,(double const (*))arg6,arg7,(double const (*))arg8,arg9); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:46, from build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_symbolic.h:50:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ap [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:5502:86: warning: passing argument 4 of 'umfpack_zl_symbolic' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_symbolic(arg1,arg2,(long long const (*))arg3,(long long const (*))arg4,(double const (*))arg5,(double const (*))arg6,arg7,(double const (*))arg8,arg9); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:46, from build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_symbolic.h:51:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ai [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c: In function '_wrap_umfpack_dl_numeric': build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:5618:49: warning: passing argument 1 of 'umfpack_dl_numeric' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_numeric((long long const (*))arg1,(long long const (*))arg2,(double const (*))arg3,arg4,arg5,(double const (*))arg6,arg7); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:47, from build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_numeric.h:23:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ap [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:5618:75: warning: passing argument 2 of 'umfpack_dl_numeric' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_dl_numeric((long long const (*))arg1,(long long const (*))arg2,(double const (*))arg3,arg4,arg5,(double const (*))arg6,arg7); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:47, from build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_numeric.h:24:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ai [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c: In function '_wrap_umfpack_zl_numeric': build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:5744:49: warning: passing argument 1 of 'umfpack_zl_numeric' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_numeric((long long const (*))arg1,(long long const (*))arg2,(double const (*))arg3,(double const (*))arg4,arg5,arg6,(double const (*))arg7,arg8); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:47, from build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_numeric.h:45:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ap [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:5744:75: warning: passing argument 2 of 'umfpack_zl_numeric' from incompatible pointer type [-Wincompatible-pointer-types] result = (SuiteSparse_long)umfpack_zl_numeric((long long const (*))arg1,(long long const (*))arg2,(double const (*))arg3,(double const (*))arg4,arg5,arg6,(double const (*))arg7,arg8); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/suitesparse/umfpack.h:47, from build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.c:3027: /usr/local/include/suitesparse/umfpack_numeric.h:46:28: note: expected 'const long int *' but argument is of type 'const long long int *' const SuiteSparse_long Ai [ ], ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/build/src.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack_wrap.o -L/usr/local/lib -L/usr/local/lib -lrt -lumfpack -lamd -lamd -lumfpack -lpython3.7m -o build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/__umfpack.so setup.py:56: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses import imp /usr/local/lib/python3.7/site-packages/numpy/distutils/system_info.py:641: UserWarning: Atlas (http://math-atlas.sourceforge.net/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [atlas]) or by setting the ATLAS environment variable. self.calc_info() /usr/local/lib/python3.7/site-packages/numpy/distutils/system_info.py:641: UserWarning: Blas (http://www.netlib.org/blas/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [blas]) or by setting the BLAS environment variable. self.calc_info() /usr/local/lib/python3.7/site-packages/numpy/distutils/system_info.py:1951: UserWarning: Specified path /usr/local/src is invalid. pre_dirs = system_info.get_paths(self, section, key) /usr/local/lib/python3.7/site-packages/numpy/distutils/system_info.py:641: UserWarning: Blas (http://www.netlib.org/blas/) sources not found. Directories to search for the sources can be specified in the numpy/distutils/site.cfg file (section [blas_src]) or by setting the BLAS_SRC environment variable. self.calc_info() -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py37-scikit-umfpack-0.3.2_3 depends on package: py37-numpy>=1.15,1<1.19,1 - found ===> py37-scikit-umfpack-0.3.2_3 depends on package: py37-scipy>0 - found ===> py37-scikit-umfpack-0.3.2_3 depends on package: py37-setuptools>0 - found ===> py37-scikit-umfpack-0.3.2_3 depends on file: /usr/local/bin/python3.7 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py37-scikit-umfpack-0.3.2_3 ===> Generating temporary packing list umfpack_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp50o0jx5i/tmp creating /tmp/tmp50o0jx5i/tmp/tmp50o0jx5i compile options: '-MMD -MF /tmp/tmp50o0jx5i/file.c.d -c' cc: /tmp/tmp50o0jx5i/file.c amd_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp5j1v15s7/tmp creating /tmp/tmp5j1v15s7/tmp/tmp5j1v15s7 compile options: '-MMD -MF /tmp/tmp5j1v15s7/file.c.d -c' cc: /tmp/tmp5j1v15s7/file.c customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpx8gxx0w0/tmp creating /tmp/tmpx8gxx0w0/tmp/tmpx8gxx0w0 compile options: '-MMD -MF /tmp/tmpx8gxx0w0/file.c.d -c' cc: /tmp/tmpx8gxx0w0/file.c FOUND: libraries = ['amd', 'amd'] library_dirs = ['/usr/local/lib'] include_dirs = ['/usr/local/include/suitesparse'] define_macros = [('SCIPY_AMD_H', None)] swig_opts = ['-I/usr/local/include/suitesparse'] customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp2s80q2cb/tmp creating /tmp/tmp2s80q2cb/tmp/tmp2s80q2cb compile options: '-MMD -MF /tmp/tmp2s80q2cb/file.c.d -c' cc: /tmp/tmp2s80q2cb/file.c FOUND: libraries = ['umfpack', 'amd', 'amd', 'umfpack'] library_dirs = ['/usr/local/lib'] include_dirs = ['/usr/local/include/suitesparse'] define_macros = [('SCIPY_UMFPACK_H', None), ('SCIPY_AMD_H', None)] swig_opts = ['-I/usr/local/include/suitesparse', '-I/usr/local/include/suitesparse'] blas_opt_info: blas_mkl_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpw51bhttx/tmp creating /tmp/tmpw51bhttx/tmp/tmpw51bhttx compile options: '-MMD -MF /tmp/tmpw51bhttx/file.c.d -c' cc: /tmp/tmpw51bhttx/file.c libraries mkl_rt not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE blis_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpz3qf2ly6/tmp creating /tmp/tmpz3qf2ly6/tmp/tmpz3qf2ly6 compile options: '-MMD -MF /tmp/tmpz3qf2ly6/file.c.d -c' cc: /tmp/tmpz3qf2ly6/file.c libraries blis not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE atlas_3_10_blas_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmphnnmnqx8/tmp creating /tmp/tmphnnmnqx8/tmp/tmphnnmnqx8 compile options: '-MMD -MF /tmp/tmphnnmnqx8/file.c.d -c' cc: /tmp/tmphnnmnqx8/file.c libraries tatlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE atlas_3_10_blas_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp1uvkd24r/tmp creating /tmp/tmp1uvkd24r/tmp/tmp1uvkd24r compile options: '-MMD -MF /tmp/tmp1uvkd24r/file.c.d -c' cc: /tmp/tmp1uvkd24r/file.c libraries satlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE atlas_blas_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpx5sjxiyi/tmp creating /tmp/tmpx5sjxiyi/tmp/tmpx5sjxiyi compile options: '-MMD -MF /tmp/tmpx5sjxiyi/file.c.d -c' cc: /tmp/tmpx5sjxiyi/file.c libraries ptf77blas,ptcblas,atlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE atlas_blas_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp8ct56xog/tmp creating /tmp/tmp8ct56xog/tmp/tmp8ct56xog compile options: '-MMD -MF /tmp/tmp8ct56xog/file.c.d -c' cc: /tmp/tmp8ct56xog/file.c libraries f77blas,cblas,atlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE accelerate_info: NOT AVAILABLE blas_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp7k_divxg/tmp creating /tmp/tmp7k_divxg/tmp/tmp7k_divxg compile options: '-MMD -MF /tmp/tmp7k_divxg/file.c.d -c' cc: /tmp/tmp7k_divxg/file.c libraries blas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE blas_src_info: NOT AVAILABLE NOT AVAILABLE running install running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "scikits.umfpack.__umfpack" sources adding 'scikits/umfpack/umfpack.i' to sources. building data_files sources build_src: building npy-pkg config files running build_py copying scikits/umfpack/version.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack running build_ext customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp502nlpvg/tmp creating /tmp/tmp502nlpvg/tmp/tmp502nlpvg compile options: '-MMD -MF /tmp/tmp502nlpvg/file.c.d -c' cc: /tmp/tmp502nlpvg/file.c customize UnixCCompiler using build_ext running install_lib creating /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7 creating /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages creating /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits creating /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits/umfpack copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/_umfpack.py -> /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits/umfpack copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/__init__.py -> /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits/umfpack copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/interface.py -> /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits/umfpack copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/umfpack.py -> /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits/umfpack copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/version.py -> /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits/umfpack copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/setup.py -> /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits/umfpack copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/scikits/umfpack/__umfpack.so -> /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits/umfpack byte-compiling /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits/umfpack/_umfpack.py to _umfpack.cpython-37.pyc byte-compiling /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits/umfpack/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits/umfpack/interface.py to interface.cpython-37.pyc byte-compiling /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits/umfpack/umfpack.py to umfpack.cpython-37.pyc byte-compiling /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits/umfpack/version.py to version.cpython-37.pyc byte-compiling /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits/umfpack/setup.py to setup.cpython-37.pyc writing byte-compilation script '/tmp/tmpgedtht50.py' /usr/local/bin/python3.7 /tmp/tmpgedtht50.py removing /tmp/tmpgedtht50.py running install_data creating /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits/umfpack/tests copying scikits/umfpack/tests/try_umfpack.py -> /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits/umfpack/tests/ copying scikits/umfpack/tests/test_interface.py -> /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits/umfpack/tests/ copying scikits/umfpack/tests/test_umfpack.py -> /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits/umfpack/tests/ copying scikits/__init__.py -> /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikits copying MANIFEST.in -> /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/ running install_clib customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpoiipnb7e/tmp creating /tmp/tmpoiipnb7e/tmp/tmpoiipnb7e compile options: '-MMD -MF /tmp/tmpoiipnb7e/file.c.d -c' cc: /tmp/tmpoiipnb7e/file.c running install_egg_info running egg_info creating scikit_umfpack.egg-info writing scikit_umfpack.egg-info/PKG-INFO writing dependency_links to scikit_umfpack.egg-info/dependency_links.txt writing requirements to scikit_umfpack.egg-info/requires.txt writing top-level names to scikit_umfpack.egg-info/top_level.txt writing manifest file 'scikit_umfpack.egg-info/SOURCES.txt' reading manifest file 'scikit_umfpack.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'scikit_umfpack.egg-info/SOURCES.txt' Copying scikit_umfpack.egg-info to /construction/math/py-scikit-umfpack/stage/usr/local/lib/python3.7/site-packages/scikit_umfpack-0.3.2-py3.7.egg-info running install_scripts writing list of installed files to '/construction/math/py-scikit-umfpack/.PLIST.pymodtmp' setup.py:56: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses import imp /usr/local/lib/python3.7/site-packages/numpy/distutils/system_info.py:641: UserWarning: Atlas (http://math-atlas.sourceforge.net/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [atlas]) or by setting the ATLAS environment variable. self.calc_info() /usr/local/lib/python3.7/site-packages/numpy/distutils/system_info.py:641: UserWarning: Blas (http://www.netlib.org/blas/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [blas]) or by setting the BLAS environment variable. self.calc_info() /usr/local/lib/python3.7/site-packages/numpy/distutils/system_info.py:1951: UserWarning: Specified path /usr/local/src is invalid. pre_dirs = system_info.get_paths(self, section, key) /usr/local/lib/python3.7/site-packages/numpy/distutils/system_info.py:641: UserWarning: Blas (http://www.netlib.org/blas/) sources not found. Directories to search for the sources can be specified in the numpy/distutils/site.cfg file (section [blas_src]) or by setting the BLAS_SRC environment variable. self.calc_info() ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/python3.7/site-packages/scikits/umfpack/__umfpack.so is linked to /usr/local/lib/libopenblas.so which does not have a SONAME. math/openblas needs to be fixed. Error: /usr/local/lib/python3.7/site-packages/scikits/umfpack/__umfpack.so is linked to /usr/local/lib/libopenblas.so from math/openblas but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libopenblas.so:math/openblas Error: /usr/local/lib/python3.7/site-packages/scikits/umfpack/__umfpack.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Error: /usr/local/lib/python3.7/site-packages/scikits/umfpack/__umfpack.so is linked to /usr/local/lib/gcc8/libgfortran.so.5 from lang/gcc8 but it is not declared as a dependency Error: /usr/local/lib/python3.7/site-packages/scikits/umfpack/__umfpack.so is linked to /usr/local/lib/gcc8/libquadmath.so.0 from lang/gcc8 but it is not declared as a dependency Error: /usr/local/lib/python3.7/site-packages/scikits/umfpack/__umfpack.so is linked to /usr/local/lib/libmetis.so.2 from math/metis but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libmetis.so:math/metis Error: /usr/local/lib/python3.7/site-packages/scikits/umfpack/__umfpack.so is linked to /usr/local/lib/gcc8/libgcc_s.so.1 from lang/gcc8 but it is not declared as a dependency Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py37-scikit-umfpack-0.3.2_3 file sizes/checksums [30]: . done packing files [30]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Saturday, 15 FEB 2020 at 15:33:04 UTC Duration: 00:03:22