=> Building math/py-pysparse@py27 Started : Saturday, 15 FEB 2020 at 15:26:59 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.1432.g9cd86-DEVELOPMENT #23: Thu Feb 13 14:43:04 PST 2020 root@sting.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.7-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.7-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/construction/math/py-pysparse XDG_CONFIG_HOME=/construction/math/py-pysparse HOME=/construction/math/py-pysparse TMPDIR="/tmp" PATH=/construction/math/py-pysparse/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" XDG_DATA_HOME=/construction/math/py-pysparse XDG_CONFIG_HOME=/construction/math/py-pysparse HOME=/construction/math/py-pysparse TMPDIR="/tmp" PATH=/construction/math/py-pysparse/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -shared -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/math/py-pysparse/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=dragonfly5 PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " OSREL=5.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/pysparse" EXAMPLESDIR="share/examples/pysparse" DATADIR="share/pysparse" WWWDIR="www/pysparse" ETCDIR="etc/pysparse" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/pysparse DOCSDIR=/usr/local/share/doc/pysparse EXAMPLESDIR=/usr/local/share/examples/pysparse WWWDIR=/usr/local/www/pysparse ETCDIR=/usr/local/etc/pysparse -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=LiveSystem USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=15 DPORTS_BUILDER= yes DISABLE_LICENSES= yes DEFAULT_VERSIONS= ssl=openssl FORCE_PACKAGE= yes DEVELOPER= yes HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.30.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=32 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500709 OSVERSION=9999999 OSREL=5.7 _OSRELEASE=5.7-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py27-pysparse-1.3_10 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.12.0_1.txz Installing pkg-1.12.0_1... Extracting pkg-1.12.0_1: .......... done ===> py27-pysparse-1.3_10 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py27-pysparse-1.3_10 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- => PythonOptimizers-pysparse-1.3-f8430bd_GH0.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch https://codeload.github.com/PythonOptimizers/pysparse/tar.gz/f8430bd?dummy=/PythonOptimizers-pysparse-1.3-f8430bd_GH0.tar.gz fetch: https://codeload.github.com/PythonOptimizers/pysparse/tar.gz/f8430bd?dummy=/PythonOptimizers-pysparse-1.3-f8430bd_GH0.tar.gz: size unknown fetch: https://codeload.github.com/PythonOptimizers/pysparse/tar.gz/f8430bd?dummy=/PythonOptimizers-pysparse-1.3-f8430bd_GH0.tar.gz: size of remote file is not known PythonOptimizers-pysparse-1.3-f8430bd_GH0.tar.gz 1271 kB 1159 kBps 01s ===> Fetching all distfiles required by py27-pysparse-1.3_10 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py27-pysparse-1.3_10 for building => SHA256 Checksum OK for PythonOptimizers-pysparse-1.3-f8430bd_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py27-pysparse-1.3_10 for building ===> Extracting for py27-pysparse-1.3_10 => SHA256 Checksum OK for PythonOptimizers-pysparse-1.3-f8430bd_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py27-pysparse-1.3_10 ===> Applying ports patches for py27-pysparse-1.3_10 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py27-pysparse-1.3_10 depends on package: py27-numpy>=1.2,1 - not found ===> Installing existing package /packages/All/py27-numpy-1.16.5_4,1.txz Installing py27-numpy-1.16.5_4,1... `-- Installing gcc8-8.3.0_3... | `-- Installing binutils-2.33.1_2,1... | | `-- Installing gettext-runtime-0.20.1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: . done | | `-- Extracting gettext-runtime-0.20.1: .......... done | `-- Extracting binutils-2.33.1_2,1: .......... done | `-- Installing gmp-6.1.2_1... | `-- Extracting gmp-6.1.2_1: .......... done | `-- Installing mpc-1.1.0_2... | | `-- Installing mpfr-4.0.2... | | `-- Extracting mpfr-4.0.2: .......... done | `-- Extracting mpc-1.1.0_2: ...... done `-- Extracting gcc8-8.3.0_3: .......... done `-- Installing openblas-0.3.7_2,1... `-- Extracting openblas-0.3.7_2,1: .......... done `-- Installing py27-setuptools-44.0.0... | `-- Installing python27-2.7.17_1... | | `-- Installing expat-2.2.8... | | `-- Extracting expat-2.2.8: .......... done | | `-- Installing libffi-3.2.1_3... | | `-- Extracting libffi-3.2.1_3: .......... done | | `-- Installing ncurses-6.1.20190525... | | `-- Extracting ncurses-6.1.20190525: .......... done | | `-- Installing openssl-1.1.1d,1... | | `-- Extracting openssl-1.1.1d,1: .......... done | | `-- Installing readline-8.0.1... | | `-- Extracting readline-8.0.1: .......... done | `-- Extracting python27-2.7.17_1: .......... done `-- Extracting py27-setuptools-44.0.0: .......... done `-- Installing suitesparse-5.4.0_5... | `-- Installing metis-5.1.0_8... | `-- Extracting metis-5.1.0_8: .......... done | `-- Installing tbb-2020.1... | `-- Extracting tbb-2020.1: .......... done `-- Extracting suitesparse-5.4.0_5: .......... done Extracting py27-numpy-1.16.5_4,1: .......... done ===== Message from gcc8-8.3.0_3: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from python27-2.7.17_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter ===== Message from py27-setuptools-44.0.0: -- Only /usr/local/bin/easy_install-2.7 script has been installed since Python 2.7 is not the default Python version. ===> py27-pysparse-1.3_10 depends on package: py27-numpy>=1.2,1 - found ===> Returning to build of py27-pysparse-1.3_10 ===> py27-pysparse-1.3_10 depends on executable: gfortran8 - found ===> py27-pysparse-1.3_10 depends on package: py27-setuptools>0 - found ===> py27-pysparse-1.3_10 depends on file: /usr/local/bin/python2.7 - found ===> py27-pysparse-1.3_10 depends on file: /usr/local/bin/as - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- ===> py27-pysparse-1.3_10 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so) -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for py27-pysparse-1.3_10 blas_opt_info: blas_mkl_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpSJyHaP/tmp creating /tmp/tmpSJyHaP/tmp/tmpSJyHaP compile options: '-MMD -MF /tmp/tmpSJyHaP/file.c.d -c' cc: /tmp/tmpSJyHaP/file.c libraries mkl_rt not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE blis_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpN4YpVd/tmp creating /tmp/tmpN4YpVd/tmp/tmpN4YpVd compile options: '-MMD -MF /tmp/tmpN4YpVd/file.c.d -c' cc: /tmp/tmpN4YpVd/file.c libraries blis not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE atlas_3_10_blas_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpPewltS/tmp creating /tmp/tmpPewltS/tmp/tmpPewltS compile options: '-MMD -MF /tmp/tmpPewltS/file.c.d -c' cc: /tmp/tmpPewltS/file.c libraries tatlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE atlas_3_10_blas_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpwxh6gX/tmp creating /tmp/tmpwxh6gX/tmp/tmpwxh6gX compile options: '-MMD -MF /tmp/tmpwxh6gX/file.c.d -c' cc: /tmp/tmpwxh6gX/file.c libraries satlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE atlas_blas_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmppS2naJ/tmp creating /tmp/tmppS2naJ/tmp/tmppS2naJ compile options: '-MMD -MF /tmp/tmppS2naJ/file.c.d -c' cc: /tmp/tmppS2naJ/file.c libraries ptf77blas,ptcblas,atlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE atlas_blas_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpWaBeFp/tmp creating /tmp/tmpWaBeFp/tmp/tmpWaBeFp compile options: '-MMD -MF /tmp/tmpWaBeFp/file.c.d -c' cc: /tmp/tmpWaBeFp/file.c libraries f77blas,cblas,atlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE accelerate_info: NOT AVAILABLE /usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py:641: UserWarning: Atlas (http://math-atlas.sourceforge.net/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [atlas]) or by setting the ATLAS environment variable. self.calc_info() blas_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpjRSF5T/tmp creating /tmp/tmpjRSF5T/tmp/tmpjRSF5T compile options: '-MMD -MF /tmp/tmpjRSF5T/file.c.d -c' cc: /tmp/tmpjRSF5T/file.c libraries blas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE /usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py:641: UserWarning: Blas (http://www.netlib.org/blas/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [blas]) or by setting the BLAS environment variable. self.calc_info() blas_src_info: /usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py:1951: UserWarning: Specified path /usr/local/src is invalid. pre_dirs = system_info.get_paths(self, section, key) NOT AVAILABLE /usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py:641: UserWarning: Blas (http://www.netlib.org/blas/) sources not found. Directories to search for the sources can be specified in the numpy/distutils/site.cfg file (section [blas_src]) or by setting the BLAS_SRC environment variable. self.calc_info() NOT AVAILABLE No blas info found Sparse:: Using BLAS info: {} Using dflt_lib_dirs = [] Using dflt_libs = [] No blas info found Eigen:: Using BLAS info: {} lapack_opt_info: lapack_mkl_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp8QGkuW/tmp creating /tmp/tmp8QGkuW/tmp/tmp8QGkuW compile options: '-MMD -MF /tmp/tmp8QGkuW/file.c.d -c' cc: /tmp/tmp8QGkuW/file.c libraries mkl_rt not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE openblas_lapack_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpefOxb9/tmp creating /tmp/tmpefOxb9/tmp/tmpefOxb9 compile options: '-MMD -MF /tmp/tmpefOxb9/file.c.d -c' cc: /tmp/tmpefOxb9/file.c customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpQsNueD/tmp creating /tmp/tmpQsNueD/tmp/tmpQsNueD compile options: '-MMD -MF /tmp/tmpQsNueD/file.c.d -c' cc: /tmp/tmpQsNueD/file.c customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp5qzP3I/tmp creating /tmp/tmp5qzP3I/tmp/tmp5qzP3I compile options: '-MMD -MF /tmp/tmp5qzP3I/file.c.d -c' cc: /tmp/tmp5qzP3I/file.c C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpFu2Cob/tmp creating /tmp/tmpFu2Cob/tmp/tmpFu2Cob compile options: '-c' cc: /tmp/tmpFu2Cob/source.c cc /tmp/tmpFu2Cob/tmp/tmpFu2Cob/source.o -L/usr/local/lib -L/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../ -lopenblas -lgfortran -o /tmp/tmpFu2Cob/a.out customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpk0Dnkb/tmp creating /tmp/tmpk0Dnkb/tmp/tmpk0Dnkb compile options: '-MMD -MF /tmp/tmpk0Dnkb/file.c.d -c' cc: /tmp/tmpk0Dnkb/file.c customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp42Xw8D/tmp creating /tmp/tmp42Xw8D/tmp/tmp42Xw8D compile options: '-MMD -MF /tmp/tmp42Xw8D/file.c.d -c' cc: /tmp/tmp42Xw8D/file.c FOUND: libraries = ['openblas', 'gfortran', 'openblas', 'gfortran'] library_dirs = ['/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] language = c define_macros = [('HAVE_CBLAS', None)] FOUND: libraries = ['openblas', 'gfortran', 'openblas', 'gfortran'] library_dirs = ['/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] language = c define_macros = [('HAVE_CBLAS', None)] /usr/local/lib/python2.7/site-packages/setuptools/dist.py:476: UserWarning: Normalizing '1.3-dev' to '1.3.dev0' normalized_version, Eigen:: Using LAPACK info: {'libraries': ['openblas', 'gfortran', 'openblas', 'gfortran'], 'library_dirs': ['/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'], 'define_macros': [('HAVE_CBLAS', None)], 'language': 'c'} No blas info found Direct:: Using BLAS info: {} Using default UMFPACK and AMD If you do not like this, edit the [UMFPACK] and [AMD] sections of site.cfg Using default SuperLU. If you do not like this, edit the [SuperLU] section of site.cfg No blas info found No blas info found running config -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py27-pysparse-1.3_10 blas_opt_info: blas_mkl_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpIbTNlR/tmp creating /tmp/tmpIbTNlR/tmp/tmpIbTNlR compile options: '-MMD -MF /tmp/tmpIbTNlR/file.c.d -c' cc: /tmp/tmpIbTNlR/file.c libraries mkl_rt not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE blis_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp6b9khI/tmp creating /tmp/tmp6b9khI/tmp/tmp6b9khI compile options: '-MMD -MF /tmp/tmp6b9khI/file.c.d -c' cc: /tmp/tmp6b9khI/file.c libraries blis not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE atlas_3_10_blas_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpXrwTf1/tmp creating /tmp/tmpXrwTf1/tmp/tmpXrwTf1 compile options: '-MMD -MF /tmp/tmpXrwTf1/file.c.d -c' cc: /tmp/tmpXrwTf1/file.c libraries tatlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE atlas_3_10_blas_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp2NlUw7/tmp creating /tmp/tmp2NlUw7/tmp/tmp2NlUw7 compile options: '-MMD -MF /tmp/tmp2NlUw7/file.c.d -c' cc: /tmp/tmp2NlUw7/file.c libraries satlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE atlas_blas_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpFBIS5T/tmp creating /tmp/tmpFBIS5T/tmp/tmpFBIS5T compile options: '-MMD -MF /tmp/tmpFBIS5T/file.c.d -c' cc: /tmp/tmpFBIS5T/file.c libraries ptf77blas,ptcblas,atlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE atlas_blas_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpTXQ25G/tmp creating /tmp/tmpTXQ25G/tmp/tmpTXQ25G compile options: '-MMD -MF /tmp/tmpTXQ25G/file.c.d -c' cc: /tmp/tmpTXQ25G/file.c libraries f77blas,cblas,atlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE accelerate_info: NOT AVAILABLE /usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py:641: UserWarning: Atlas (http://math-atlas.sourceforge.net/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [atlas]) or by setting the ATLAS environment variable. self.calc_info() blas_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp1_ymCs/tmp creating /tmp/tmp1_ymCs/tmp/tmp1_ymCs compile options: '-MMD -MF /tmp/tmp1_ymCs/file.c.d -c' cc: /tmp/tmp1_ymCs/file.c libraries blas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE /usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py:641: UserWarning: Blas (http://www.netlib.org/blas/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [blas]) or by setting the BLAS environment variable. self.calc_info() blas_src_info: /usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py:1951: UserWarning: Specified path /usr/local/src is invalid. pre_dirs = system_info.get_paths(self, section, key) NOT AVAILABLE /usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py:641: UserWarning: Blas (http://www.netlib.org/blas/) sources not found. Directories to search for the sources can be specified in the numpy/distutils/site.cfg file (section [blas_src]) or by setting the BLAS_SRC environment variable. self.calc_info() NOT AVAILABLE No blas info found Sparse:: Using BLAS info: {} Using dflt_lib_dirs = [] Using dflt_libs = [] No blas info found Eigen:: Using BLAS info: {} lapack_opt_info: lapack_mkl_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpuGTglI/tmp creating /tmp/tmpuGTglI/tmp/tmpuGTglI compile options: '-MMD -MF /tmp/tmpuGTglI/file.c.d -c' cc: /tmp/tmpuGTglI/file.c libraries mkl_rt not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE openblas_lapack_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmptzfhKi/tmp creating /tmp/tmptzfhKi/tmp/tmptzfhKi compile options: '-MMD -MF /tmp/tmptzfhKi/file.c.d -c' cc: /tmp/tmptzfhKi/file.c customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpSSQw_T/tmp creating /tmp/tmpSSQw_T/tmp/tmpSSQw_T compile options: '-MMD -MF /tmp/tmpSSQw_T/file.c.d -c' cc: /tmp/tmpSSQw_T/file.c customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp5AaJhM/tmp creating /tmp/tmp5AaJhM/tmp/tmp5AaJhM compile options: '-MMD -MF /tmp/tmp5AaJhM/file.c.d -c' cc: /tmp/tmp5AaJhM/file.c C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpRayzIh/tmp creating /tmp/tmpRayzIh/tmp/tmpRayzIh compile options: '-c' cc: /tmp/tmpRayzIh/source.c cc /tmp/tmpRayzIh/tmp/tmpRayzIh/source.o -L/usr/local/lib -L/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../ -lopenblas -lgfortran -o /tmp/tmpRayzIh/a.out customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpUUnpNY/tmp creating /tmp/tmpUUnpNY/tmp/tmpUUnpNY compile options: '-MMD -MF /tmp/tmpUUnpNY/file.c.d -c' cc: /tmp/tmpUUnpNY/file.c customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpvPvcDc/tmp creating /tmp/tmpvPvcDc/tmp/tmpvPvcDc compile options: '-MMD -MF /tmp/tmpvPvcDc/file.c.d -c' cc: /tmp/tmpvPvcDc/file.c FOUND: libraries = ['openblas', 'gfortran', 'openblas', 'gfortran'] library_dirs = ['/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] language = c define_macros = [('HAVE_CBLAS', None)] FOUND: libraries = ['openblas', 'gfortran', 'openblas', 'gfortran'] library_dirs = ['/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] language = c define_macros = [('HAVE_CBLAS', None)] /usr/local/lib/python2.7/site-packages/setuptools/dist.py:476: UserWarning: Normalizing '1.3-dev' to '1.3.dev0' normalized_version, Eigen:: Using LAPACK info: {'libraries': ['openblas', 'gfortran', 'openblas', 'gfortran'], 'library_dirs': ['/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'], 'define_macros': [('HAVE_CBLAS', None)], 'language': 'c'} No blas info found Direct:: Using BLAS info: {} Using default UMFPACK and AMD If you do not like this, edit the [UMFPACK] and [AMD] sections of site.cfg Using default SuperLU. If you do not like this, edit the [SuperLU] section of site.cfg No blas info found No blas info found running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building py_modules sources creating build creating build/src.dragonfly-5.7-SYNTH-x86_64-2.7 creating build/src.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse creating build/src.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/sparse creating build/src.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/eigen creating build/src.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct creating build/src.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/itsolvers creating build/src.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/precon building extension "pysparse.sparse.spmatrix" sources building extension "pysparse.eigen.jdsym" sources building extension "pysparse.direct.umfpack" sources building extension "pysparse.direct.superlu" sources building extension "pysparse.itsolvers.krylov" sources building extension "pysparse.precon.precon" sources building data_files sources build_src: building npy-pkg config files running build_py creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7 creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse copying pysparse/version.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse copying pysparse/setup.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse copying pysparse/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse copying build/src.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/__config__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/sparse copying pysparse/sparse/setup.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/sparse copying pysparse/sparse/pysparseMatrix.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/sparse copying pysparse/sparse/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/sparse copying pysparse/sparse/sparseMatrix.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/sparse copying build/src.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/sparse/__config__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/sparse creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/eigen copying pysparse/eigen/setup.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/eigen copying pysparse/eigen/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/eigen copying build/src.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/eigen/__config__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/eigen creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct copying pysparse/direct/setup.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct copying pysparse/direct/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct copying pysparse/direct/pysparseSuperLU.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct copying pysparse/direct/pysparseUmfpack.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct copying pysparse/direct/directSolver.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct copying build/src.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/__config__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/itsolvers copying pysparse/itsolvers/itsolvers_util.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/itsolvers copying pysparse/itsolvers/setup.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/itsolvers copying pysparse/itsolvers/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/itsolvers copying build/src.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/itsolvers/__config__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/itsolvers creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/precon copying pysparse/precon/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/precon copying pysparse/precon/setup.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/precon copying build/src.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/precon/__config__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/precon creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/tools copying pysparse/tools/poisson.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/tools copying pysparse/tools/poisson_vec.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/tools copying pysparse/tools/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/tools copying pysparse/tools/sparray.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/tools copying pysparse/tools/sptime.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/tools copying pysparse/tools/spmatrix_util.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/tools creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/misc copying pysparse/misc/system.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/misc copying pysparse/misc/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/misc running build_ext customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp7DatZA/tmp creating /tmp/tmp7DatZA/tmp/tmp7DatZA compile options: '-MMD -MF /tmp/tmp7DatZA/file.c.d -c' cc: /tmp/tmp7DatZA/file.c customize UnixCCompiler using build_ext building 'pysparse.sparse.spmatrix' extension compiling C sources C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/sparse creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/sparse/src compile options: '-DLENFUNC_OK=1 -Ipysparse/sparse/src -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/math/py-pysparse/pysparse-f8430bd/pysparse/include -I/usr/local/include/python2.7 -c' cc: pysparse/sparse/src/spmatrixmodule.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from pysparse/sparse/src/spmatrixmodule.c:9: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -shared -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/sparse/src/spmatrixmodule.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/sparse/spmatrix.so /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) building 'pysparse.eigen.jdsym' extension compiling C sources C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/eigen creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/eigen/src compile options: '-DHAVE_CBLAS -Ipysparse/eigen/src -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/math/py-pysparse/pysparse-f8430bd/pysparse/include -I/usr/local/include/python2.7 -c' cc: pysparse/eigen/src/jdsymmodule.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from pysparse/eigen/src/jdsymmodule.c:16: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -shared -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/eigen/src/jdsymmodule.o -L/usr/local/lib -L/usr/local/lib/gcc8/ -L/usr/local/lib -lopenblas -lgfortran -lopenblas -lgfortran -lpython2.7 -o build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/eigen/jdsym.so /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) building 'pysparse.direct.umfpack' extension compiling C sources C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/src creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/amd creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/amd/src compile options: '-DNBLAS=0 -DDINT=1 -Ipysparse/direct/src -Ipysparse/direct/umfpack/include -Ipysparse/direct/amd/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/math/py-pysparse/pysparse-f8430bd/pysparse/include -I/usr/local/include/python2.7 -c' cc: pysparse/direct/umfpack/src/umfpack_save_numeric.c cc: pysparse/direct/umfpack/src/umf_uhsolve.c cc: pysparse/direct/umfpack/src/umfpack_report_numeric.c cc: pysparse/direct/umfpack/src/umf_create_element.c cc: pysparse/direct/amd/src/amd_postorder.c cc: pysparse/direct/umfpack/src/umfpack_report_symbolic.c cc: pysparse/direct/umfpack/src/umfpack_free_symbolic.c cc: pysparse/direct/umfpack/src/umf_extend_front.c cc: pysparse/direct/umfpack/src/umf_mem_free_tail_block.c cc: pysparse/direct/umfpack/src/umfpack_report_control.c cc: pysparse/direct/amd/src/amd_defaults.c cc: pysparse/direct/umfpack/src/umf_lsolve.c cc: pysparse/direct/umfpack/src/umf_fsize.c cc: pysparse/direct/umfpack/src/umf_kernel.c cc: pysparse/direct/umfpack/src/umfpack_numeric.c cc: pysparse/direct/umfpack/src/umfpack_solve.c cc: pysparse/direct/umfpack/src/umf_malloc.c cc: pysparse/direct/umfpack/src/umf_apply_order.c cc: pysparse/direct/amd/src/amd_order.c cc: pysparse/direct/umfpack/src/umfpack_report_perm.c cc: pysparse/direct/umfpack/src/umf_kernel_wrapup.c cc: pysparse/direct/umfpack/src/umf_report_perm.c cc: pysparse/direct/umfpack/src/umfpack_scale.c cc: pysparse/direct/umfpack/src/umf_mem_alloc_element.c cc: pysparse/direct/amd/src/amd_valid.c cc: pysparse/direct/umfpack/src/umf_usolve.c cc: pysparse/direct/umfpack/src/umf_colamd.c cc: pysparse/direct/umfpack/src/umf_mem_alloc_head_block.c cc: pysparse/direct/umfpack/src/umf_analyze.c cc: pysparse/direct/umfpack/src/umf_ltsolve.c cc: pysparse/direct/umfpack/src/umfpack_report_info.c cc: pysparse/direct/umfpack/src/umfpack_wsolve.c cc: pysparse/direct/umfpack/src/umfpack_get_numeric.c cc: pysparse/direct/umfpack/src/umf_valid_symbolic.c cc: pysparse/direct/umfpack/src/umf_triplet_map_x.c cc: pysparse/direct/amd/src/amd_control.c cc: pysparse/direct/umfpack/src/umf_set_stats.c cc: pysparse/direct/umfpack/src/umf_assemble.c cc: pysparse/direct/umfpack/src/umfpack_defaults.c cc: pysparse/direct/umfpack/src/umf_row_search.c cc: pysparse/direct/umfpack/src/umfpack_get_symbolic.c cc: pysparse/direct/umfpack/src/umf_kernel_init.c cc: pysparse/direct/umfpack/src/umf_transpose.c cc: pysparse/direct/umfpack/src/umfpack_col_to_triplet.c cc: pysparse/direct/umfpack/src/umf_free.c cc: pysparse/direct/src/umfpackmodule.c cc: pysparse/direct/umfpack/src/umf_utsolve.c cc: pysparse/direct/amd/src/amd_post_tree.c cc: pysparse/direct/umfpack/src/umfpack_transpose.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from pysparse/direct/src/umfpackmodule.c:64: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc: pysparse/direct/umfpack/src/umf_solve.c cc: pysparse/direct/umfpack/src/umfpack_tictoc.c cc: pysparse/direct/umfpack/src/umf_realloc.c cc: pysparse/direct/umfpack/src/umf_local_search.c cc: pysparse/direct/umfpack/src/umfpack_report_matrix.c cc: pysparse/direct/umfpack/src/umf_lhsolve.c cc: pysparse/direct/umfpack/src/umf_assemble_fixq.c cc: pysparse/direct/umfpack/src/umf_start_front.c cc: pysparse/direct/umfpack/src/umfpack_free_numeric.c cc: pysparse/direct/umfpack/src/umf_mem_alloc_tail_block.c cc: pysparse/direct/umfpack/src/umfpack_triplet_to_col.c cc: pysparse/direct/umfpack/src/umfpack_timer.c cc: pysparse/direct/umfpack/src/umf_valid_numeric.c cc: pysparse/direct/umfpack/src/umfpack_load_symbolic.c cc: pysparse/direct/umfpack/src/umf_singletons.c cc: pysparse/direct/umfpack/src/umfpack_load_numeric.c cc: pysparse/direct/umfpack/src/umf_scale_column.c cc: pysparse/direct/amd/src/amd_2.c cc: pysparse/direct/umfpack/src/umf_is_permutation.c cc: pysparse/direct/umfpack/src/umf_2by2.c cc: pysparse/direct/amd/src/amd_dump.c cc: pysparse/direct/amd/src/amd_info.c cc: pysparse/direct/umfpack/src/umf_init_front.c cc: pysparse/direct/umfpack/src/umf_build_tuples.c cc: pysparse/direct/umfpack/src/umf_scale.c cc: pysparse/direct/amd/src/amd_1.c cc: pysparse/direct/umfpack/src/umfpack_report_vector.c cc: pysparse/direct/umfpack/src/umfpack_save_symbolic.c cc: pysparse/direct/umfpack/src/umfpack_get_lunz.c cc: pysparse/direct/umfpack/src/umfpack_qsymbolic.c cc: pysparse/direct/umfpack/src/umfpack_report_triplet.c cc: pysparse/direct/umfpack/src/umf_report_vector.c cc: pysparse/direct/umfpack/src/umf_store_lu.c cc: pysparse/direct/umfpack/src/umf_triplet_nomap_nox.c cc: pysparse/direct/umfpack/src/umfpack_symbolic.c cc: pysparse/direct/umfpack/src/umf_grow_front.c cc: pysparse/direct/umfpack/src/umf_symbolic_usage.c cc: pysparse/direct/umfpack/src/umf_triplet_map_nox.c cc: pysparse/direct/umfpack/src/umf_dump.c cc: pysparse/direct/umfpack/src/umf_get_memory.c cc: pysparse/direct/umfpack/src/umf_mem_init_memoryspace.c cc: pysparse/direct/umfpack/src/umf_blas3_update.c cc: pysparse/direct/umfpack/src/umf_tuple_lengths.c cc: pysparse/direct/umfpack/src/umf_garbage_collection.c cc: pysparse/direct/umfpack/src/umfpack_report_status.c cc: pysparse/direct/umfpack/src/umf_triplet_nomap_x.c cc: pysparse/direct/amd/src/amd_aat.c cc -shared -shared -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_save_numeric.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_report_control.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_report_vector.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_kernel_wrapup.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_lhsolve.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_get_numeric.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_report_perm.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_lsolve.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_dump.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_get_lunz.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_is_permutation.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_report_triplet.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_store_lu.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_save_symbolic.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_assemble.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_mem_alloc_tail_block.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_transpose.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_numeric.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_mem_free_tail_block.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_realloc.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_grow_front.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_utsolve.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_report_numeric.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_init_front.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_scale.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_triplet_map_x.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_extend_front.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_triplet_map_nox.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_garbage_collection.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_fsize.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_get_memory.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_colamd.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_load_symbolic.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_report_status.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_analyze.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_timer.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_uhsolve.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_solve.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_wsolve.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_tictoc.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_col_to_triplet.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_singletons.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_free.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_valid_numeric.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_malloc.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_report_perm.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_usolve.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_local_search.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_defaults.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_symbolic.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_scale_column.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_apply_order.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_ltsolve.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_blas3_update.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_build_tuples.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_tuple_lengths.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_free_numeric.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_2by2.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_get_symbolic.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_scale.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_assemble_fixq.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_mem_init_memoryspace.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_triplet_to_col.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_report_matrix.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_start_front.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_report_vector.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_row_search.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_transpose.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_free_symbolic.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_valid_symbolic.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_report_symbolic.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_load_numeric.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_mem_alloc_element.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_set_stats.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_qsymbolic.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_triplet_nomap_nox.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_triplet_nomap_x.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_report_info.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_kernel.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_create_element.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_symbolic_usage.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umfpack_solve.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_kernel_init.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack/src/umf_mem_alloc_head_block.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/src/umfpackmodule.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/amd/src/amd_postorder.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/amd/src/amd_post_tree.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/amd/src/amd_2.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/amd/src/amd_valid.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/amd/src/amd_1.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/amd/src/amd_dump.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/amd/src/amd_defaults.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/amd/src/amd_control.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/amd/src/amd_info.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/amd/src/amd_aat.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/amd/src/amd_order.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack.so /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) building 'pysparse.direct.superlu' extension compiling C sources C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src compile options: '-DUSE_VENDOR_BLAS=0 -Ipysparse/direct/src -Ipysparse/direct/superlu/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/math/py-pysparse/pysparse-f8430bd/pysparse/include -I/usr/local/include/python2.7 -c' cc: pysparse/direct/superlu/src/dsnode_dfs.c cc: pysparse/direct/superlu/src/memory.c cc: pysparse/direct/superlu/src/dcomplex.c cc: pysparse/direct/superlu/src/dpanel_dfs.c cc: pysparse/direct/superlu/src/relax_snode.c cc: pysparse/direct/superlu/src/dpivotL.c cc: pysparse/direct/superlu/src/dpruneL.c cc: pysparse/direct/superlu/src/dgstrf.c cc: pysparse/direct/superlu/src/icmax1.c cc: pysparse/direct/superlu/src/dzsum1.c cc: pysparse/direct/superlu/src/dpanel_bmod.c cc: pysparse/direct/superlu/src/izmax1.c pysparse/direct/superlu/src/dpanel_bmod.c: In function 'dpanel_bmod': pysparse/direct/superlu/src/dpanel_bmod.c:217:7: warning: implicit declaration of function 'dtrsv_'; did you mean 'strstr'? [-Wimplicit-function-declaration] dtrsv_( "L", "N", "U", &segsze, &lusup[luptr], ^~~~~~ strstr pysparse/direct/superlu/src/dpanel_bmod.c:264:7: warning: implicit declaration of function 'dgemv_'; did you mean 'dgssvx'? [-Wimplicit-function-declaration] dgemv_("N", &block_nrow, &segsze, &alpha, &lusup[luptr1], ^~~~~~ dgssvx cc: pysparse/direct/superlu/src/dlamch.c pysparse/direct/superlu/src/izmax1.c: In function 'izmax1_': pysparse/direct/superlu/src/izmax1.c:70:29: warning: implicit declaration of function 'abs' [-Wimplicit-function-declaration] smax = (d__1 = CX(1).r, abs(d__1)); ^~~ cc: pysparse/direct/superlu/src/dgsequ.c cc: pysparse/direct/superlu/src/dlangs.c cc: pysparse/direct/superlu/src/superlu_timer.c cc: pysparse/direct/src/superlumodule.c pysparse/direct/superlu/src/dlamch.c: In function 'dlamch_': pysparse/direct/superlu/src/dlamch.c:100:9: warning: implicit declaration of function 'lsame_' [-Wimplicit-function-declaration] if (lsame_(cmach, "E")) { ^~~~~~ cc: pysparse/direct/superlu/src/dlaqgs.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from pysparse/direct/src/superlumodule.c:5: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from pysparse/direct/src/superlumodule.c:9: pysparse/direct/superlu/include/util.h:41: warning: "FALSE" redefined #define FALSE 0 In file included from pysparse/direct/src/superlumodule.c:6: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/noprefix.h:151: note: this is the location of the previous definition #define FALSE NPY_FALSE In file included from pysparse/direct/src/superlumodule.c:9: pysparse/direct/superlu/include/util.h:42: warning: "TRUE" redefined #define TRUE 1 In file included from pysparse/direct/src/superlumodule.c:6: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/noprefix.h:147: note: this is the location of the previous definition #define TRUE NPY_TRUE cc: pysparse/direct/superlu/src/dcolumn_bmod.c cc: pysparse/direct/superlu/src/xerbla.c cc: pysparse/direct/superlu/src/mmd.c cc: pysparse/direct/superlu/src/dgssvx.c pysparse/direct/superlu/src/dcolumn_bmod.c: In function 'dcolumn_bmod': pysparse/direct/superlu/src/dcolumn_bmod.c:217:3: warning: implicit declaration of function 'dtrsv_'; did you mean 'strstr'? [-Wimplicit-function-declaration] dtrsv_( "L", "N", "U", &segsze, &lusup[luptr], ^~~~~~ strstr pysparse/direct/superlu/src/dcolumn_bmod.c:228:3: warning: implicit declaration of function 'dgemv_'; did you mean 'dgssvx'? [-Wimplicit-function-declaration] dgemv_( "N", &nrow, &segsze, &alpha, &lusup[luptr], ^~~~~~ dgssvx cc: pysparse/direct/superlu/src/sp_ienv.c cc: pysparse/direct/superlu/src/dgssv.c pysparse/direct/superlu/src/sp_ienv.c: In function 'sp_ienv': pysparse/direct/superlu/src/sp_ienv.c:57:5: warning: implicit declaration of function 'xerbla_' [-Wimplicit-function-declaration] xerbla_("sp_ienv", &i); ^~~~~~~ pysparse/direct/superlu/src/xerbla.c: In function 'xerbla_': pysparse/direct/superlu/src/xerbla.c:33:5: warning: implicit declaration of function 'printf' [-Wimplicit-function-declaration] printf("** On entry to %6s, parameter number %2d had an illegal value\n", ^~~~~~ pysparse/direct/superlu/src/xerbla.c:33:5: warning: incompatible implicit declaration of built-in function 'printf' pysparse/direct/superlu/src/xerbla.c:33:5: note: include '' or provide a declaration of 'printf' pysparse/direct/superlu/src/xerbla.c:1:1: +#include /* Subroutine */ int xerbla_(char *srname, int *info) pysparse/direct/superlu/src/xerbla.c:33:5: printf("** On entry to %6s, parameter number %2d had an illegal value\n", ^~~~~~ cc: pysparse/direct/superlu/src/util.c cc: pysparse/direct/superlu/src/dgscon.c cc: pysparse/direct/superlu/src/lsame.c cc: pysparse/direct/superlu/src/get_perm_c.c cc: pysparse/direct/superlu/src/sp_preorder.c cc: pysparse/direct/superlu/src/sp_coletree.c pysparse/direct/superlu/src/sp_preorder.c:144:1: warning: return type defaults to 'int' [-Wimplicit-int] check_perm(char *what, int n, int *perm) ^~~~~~~~~~ cc: pysparse/direct/superlu/src/scomplex.c cc: pysparse/direct/superlu/src/dutil.c cc: pysparse/direct/superlu/src/dsp_blas2.c cc: pysparse/direct/superlu/src/dcolumn_dfs.c cc: pysparse/direct/superlu/src/dmemory.c cc: pysparse/direct/superlu/src/dsp_blas3.c pysparse/direct/superlu/src/dsp_blas2.c: In function 'sp_dtrsv': pysparse/direct/superlu/src/dsp_blas2.c:154:7: warning: implicit declaration of function 'dtrsv_'; did you mean 'strstr'? [-Wimplicit-function-declaration] dtrsv_("L", "N", "U", &nsupc, &Lval[luptr], &nsupr, ^~~~~~ strstr pysparse/direct/superlu/src/dsp_blas2.c:157:7: warning: implicit declaration of function 'dgemv_'; did you mean 'daemon'? [-Wimplicit-function-declaration] dgemv_("N", &nrow, &nsupc, &alpha, &Lval[luptr+nsupc], ^~~~~~ daemon pysparse/direct/superlu/src/dutil.c:470:1: warning: return type defaults to 'int' [-Wimplicit-int] print_double_vec(char *what, int n, double *vec) ^~~~~~~~~~~~~~~~ cc: pysparse/direct/superlu/src/dgstrs.c cc: pysparse/direct/superlu/src/dreadhb.c cc: pysparse/direct/superlu/src/dlacon.c pysparse/direct/superlu/src/dgstrs.c: In function 'dgstrs': pysparse/direct/superlu/src/dgstrs.c:183:3: warning: implicit declaration of function 'dtrsm_'; did you mean 'strstr'? [-Wimplicit-function-declaration] dtrsm_("L", "L", "N", "U", &nsupc, &nrhs, &alpha, ^~~~~~ strstr pysparse/direct/superlu/src/dgstrs.c:186:3: warning: implicit declaration of function 'dgemm_'; did you mean 'daemon'? [-Wimplicit-function-declaration] dgemm_( "N", "N", &nrow, &nrhs, &nsupc, &alpha, ^~~~~~ daemon cc: pysparse/direct/superlu/src/dpivotgrowth.c cc: pysparse/direct/superlu/src/dcopy_to_ucol.c cc: pysparse/direct/superlu/src/dgsrfs.c cc: pysparse/direct/superlu/src/dsnode_bmod.c pysparse/direct/superlu/src/dsnode_bmod.c: In function 'dsnode_bmod': pysparse/direct/superlu/src/dsnode_bmod.c:97:2: warning: implicit declaration of function 'dtrsv_'; did you mean 'strstr'? [-Wimplicit-function-declaration] dtrsv_( "L", "N", "U", &nsupc, &lusup[luptr], &nsupr, ^~~~~~ strstr pysparse/direct/superlu/src/dsnode_bmod.c:99:2: warning: implicit declaration of function 'dgemv_'; did you mean 'daemon'? [-Wimplicit-function-declaration] dgemv_( "N", &nrow, &nsupc, &alpha, &lusup[luptr+nsupc], &nsupr, ^~~~~~ daemon cc: pysparse/direct/superlu/src/colamd.c cc -shared -shared -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/dreadhb.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/colamd.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/dzsum1.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/dgstrs.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/dgsequ.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/icmax1.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/dsp_blas2.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/dgsrfs.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/sp_ienv.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/mmd.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/relax_snode.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/superlu_timer.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/scomplex.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/sp_coletree.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/dgssv.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/dmemory.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/dpanel_bmod.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/util.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/dlaqgs.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/dutil.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/get_perm_c.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/dcomplex.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/dpivotL.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/dlacon.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/dcopy_to_ucol.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/dpanel_dfs.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/dcolumn_bmod.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/dsnode_dfs.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/dpivotgrowth.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/dgssvx.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/xerbla.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/izmax1.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/dgstrf.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/dcolumn_dfs.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/dlangs.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/sp_preorder.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/dlamch.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/dpruneL.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/dsp_blas3.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/dgscon.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/lsame.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/memory.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu/src/dsnode_bmod.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/src/superlumodule.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu.so /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) building 'pysparse.itsolvers.krylov' extension compiling C sources C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/itsolvers creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/itsolvers/src compile options: '-Ipysparse/itsolvers/src -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/math/py-pysparse/pysparse-f8430bd/pysparse/include -I/usr/local/include/python2.7 -c' cc: pysparse/itsolvers/src/itsolversmodule.c cc: pysparse/itsolvers/src/qmrs.c cc: pysparse/itsolvers/src/bicgstab.c cc: pysparse/itsolvers/src/gmres.c cc: pysparse/itsolvers/src/minres.c cc: pysparse/itsolvers/src/pcg.c cc: pysparse/itsolvers/src/cgs.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from pysparse/itsolvers/src/itsolversmodule.c:9: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -shared -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/itsolvers/src/itsolversmodule.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/itsolvers/src/bicgstab.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/itsolvers/src/cgs.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/itsolvers/src/gmres.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/itsolvers/src/minres.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/itsolvers/src/pcg.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/itsolvers/src/qmrs.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/itsolvers/krylov.so /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) building 'pysparse.precon.precon' extension compiling C sources C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/precon creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/precon/src compile options: '-Ipysparse/precon/src -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/construction/math/py-pysparse/pysparse-f8430bd/pysparse/include -I/usr/local/include/python2.7 -c' cc: pysparse/precon/src/preconmodule.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from pysparse/precon/src/preconmodule.c:4: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -shared -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/precon/src/preconmodule.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/precon/precon.so /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py27-pysparse-1.3_10 depends on package: py27-numpy>=1.2,1 - found ===> py27-pysparse-1.3_10 depends on executable: gfortran8 - found ===> py27-pysparse-1.3_10 depends on package: py27-setuptools>0 - found ===> py27-pysparse-1.3_10 depends on file: /usr/local/bin/python2.7 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py27-pysparse-1.3_10 ===> Generating temporary packing list blas_opt_info: blas_mkl_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpiBlKv2/tmp creating /tmp/tmpiBlKv2/tmp/tmpiBlKv2 compile options: '-MMD -MF /tmp/tmpiBlKv2/file.c.d -c' cc: /tmp/tmpiBlKv2/file.c libraries mkl_rt not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE blis_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpctkp4I/tmp creating /tmp/tmpctkp4I/tmp/tmpctkp4I compile options: '-MMD -MF /tmp/tmpctkp4I/file.c.d -c' cc: /tmp/tmpctkp4I/file.c libraries blis not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE atlas_3_10_blas_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpieltum/tmp creating /tmp/tmpieltum/tmp/tmpieltum compile options: '-MMD -MF /tmp/tmpieltum/file.c.d -c' cc: /tmp/tmpieltum/file.c libraries tatlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE atlas_3_10_blas_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpKN0u6A/tmp creating /tmp/tmpKN0u6A/tmp/tmpKN0u6A compile options: '-MMD -MF /tmp/tmpKN0u6A/file.c.d -c' cc: /tmp/tmpKN0u6A/file.c libraries satlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE atlas_blas_threads_info: Setting PTATLAS=ATLAS customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpu8f4mo/tmp creating /tmp/tmpu8f4mo/tmp/tmpu8f4mo compile options: '-MMD -MF /tmp/tmpu8f4mo/file.c.d -c' cc: /tmp/tmpu8f4mo/file.c libraries ptf77blas,ptcblas,atlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE atlas_blas_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmphJkfwL/tmp creating /tmp/tmphJkfwL/tmp/tmphJkfwL compile options: '-MMD -MF /tmp/tmphJkfwL/file.c.d -c' cc: /tmp/tmphJkfwL/file.c libraries f77blas,cblas,atlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE accelerate_info: NOT AVAILABLE /usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py:641: UserWarning: Atlas (http://math-atlas.sourceforge.net/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [atlas]) or by setting the ATLAS environment variable. self.calc_info() blas_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp4A_wO5/tmp creating /tmp/tmp4A_wO5/tmp/tmp4A_wO5 compile options: '-MMD -MF /tmp/tmp4A_wO5/file.c.d -c' cc: /tmp/tmp4A_wO5/file.c libraries blas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE /usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py:641: UserWarning: Blas (http://www.netlib.org/blas/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [blas]) or by setting the BLAS environment variable. self.calc_info() blas_src_info: /usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py:1951: UserWarning: Specified path /usr/local/src is invalid. pre_dirs = system_info.get_paths(self, section, key) NOT AVAILABLE /usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py:641: UserWarning: Blas (http://www.netlib.org/blas/) sources not found. Directories to search for the sources can be specified in the numpy/distutils/site.cfg file (section [blas_src]) or by setting the BLAS_SRC environment variable. self.calc_info() NOT AVAILABLE No blas info found Sparse:: Using BLAS info: {} Using dflt_lib_dirs = [] Using dflt_libs = [] No blas info found Eigen:: Using BLAS info: {} lapack_opt_info: lapack_mkl_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpVHK5FM/tmp creating /tmp/tmpVHK5FM/tmp/tmpVHK5FM compile options: '-MMD -MF /tmp/tmpVHK5FM/file.c.d -c' cc: /tmp/tmpVHK5FM/file.c libraries mkl_rt not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] NOT AVAILABLE openblas_lapack_info: customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp4jwbjU/tmp creating /tmp/tmp4jwbjU/tmp/tmp4jwbjU compile options: '-MMD -MF /tmp/tmp4jwbjU/file.c.d -c' cc: /tmp/tmp4jwbjU/file.c customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpNw8eUe/tmp creating /tmp/tmpNw8eUe/tmp/tmpNw8eUe compile options: '-MMD -MF /tmp/tmpNw8eUe/file.c.d -c' cc: /tmp/tmpNw8eUe/file.c customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpnB8qeZ/tmp creating /tmp/tmpnB8qeZ/tmp/tmpnB8qeZ compile options: '-MMD -MF /tmp/tmpnB8qeZ/file.c.d -c' cc: /tmp/tmpnB8qeZ/file.c C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp7CwP4R/tmp creating /tmp/tmp7CwP4R/tmp/tmp7CwP4R compile options: '-c' cc: /tmp/tmp7CwP4R/source.c cc /tmp/tmp7CwP4R/tmp/tmp7CwP4R/source.o -L/usr/local/lib -L/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../ -lopenblas -lgfortran -o /tmp/tmp7CwP4R/a.out customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpwYEHPw/tmp creating /tmp/tmpwYEHPw/tmp/tmpwYEHPw compile options: '-MMD -MF /tmp/tmpwYEHPw/file.c.d -c' cc: /tmp/tmpwYEHPw/file.c customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmphuXGvN/tmp creating /tmp/tmphuXGvN/tmp/tmphuXGvN compile options: '-MMD -MF /tmp/tmphuXGvN/file.c.d -c' cc: /tmp/tmphuXGvN/file.c FOUND: libraries = ['openblas', 'gfortran', 'openblas', 'gfortran'] library_dirs = ['/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] language = c define_macros = [('HAVE_CBLAS', None)] FOUND: libraries = ['openblas', 'gfortran', 'openblas', 'gfortran'] library_dirs = ['/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'] language = c define_macros = [('HAVE_CBLAS', None)] /usr/local/lib/python2.7/site-packages/setuptools/dist.py:476: UserWarning: Normalizing '1.3-dev' to '1.3.dev0' normalized_version, Eigen:: Using LAPACK info: {'libraries': ['openblas', 'gfortran', 'openblas', 'gfortran'], 'library_dirs': ['/usr/local/lib', '/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.7/8.3.0/../../../'], 'define_macros': [('HAVE_CBLAS', None)], 'language': 'c'} No blas info found Direct:: Using BLAS info: {} Using default UMFPACK and AMD If you do not like this, edit the [UMFPACK] and [AMD] sections of site.cfg Using default SuperLU. If you do not like this, edit the [SuperLU] section of site.cfg No blas info found No blas info found running install running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building py_modules sources building extension "pysparse.sparse.spmatrix" sources building extension "pysparse.eigen.jdsym" sources building extension "pysparse.direct.umfpack" sources building extension "pysparse.direct.superlu" sources building extension "pysparse.itsolvers.krylov" sources building extension "pysparse.precon.precon" sources building data_files sources build_src: building npy-pkg config files running build_py copying pysparse/version.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse copying build/src.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/__config__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse copying build/src.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/sparse/__config__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/sparse copying build/src.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/eigen/__config__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/eigen copying build/src.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/__config__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct copying build/src.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/itsolvers/__config__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/itsolvers copying build/src.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/precon/__config__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/precon running build_ext customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpqZ0q5y/tmp creating /tmp/tmpqZ0q5y/tmp/tmpqZ0q5y compile options: '-MMD -MF /tmp/tmpqZ0q5y/file.c.d -c' cc: /tmp/tmpqZ0q5y/file.c customize UnixCCompiler using build_ext running install_lib creating /construction/math/py-pysparse/stage/usr/local/lib/python2.7 creating /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages creating /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse creating /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/sparse copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/sparse/__init__.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/sparse copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/sparse/sparseMatrix.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/sparse copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/sparse/__config__.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/sparse copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/sparse/setup.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/sparse copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/sparse/pysparseMatrix.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/sparse copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/sparse/spmatrix.so -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/sparse creating /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/tools/poisson.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/tools/poisson_vec.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/tools/__init__.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/tools/sparray.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/tools/sptime.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/tools/spmatrix_util.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/version.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse creating /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/umfpack.so -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/setup.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/__init__.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/pysparseSuperLU.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/pysparseUmfpack.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/directSolver.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/__config__.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/direct/superlu.so -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct creating /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/misc copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/misc/system.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/misc copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/misc/__init__.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/misc copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/setup.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/__init__.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse creating /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/itsolvers copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/itsolvers/krylov.so -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/itsolvers copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/itsolvers/itsolvers_util.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/itsolvers copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/itsolvers/setup.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/itsolvers copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/itsolvers/__init__.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/itsolvers copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/itsolvers/__config__.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/itsolvers copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/__config__.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse creating /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/eigen copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/eigen/__init__.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/eigen copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/eigen/__config__.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/eigen copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/eigen/setup.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/eigen copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/eigen/jdsym.so -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/eigen creating /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/precon copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/precon/precon.so -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/precon copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/precon/setup.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/precon copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/precon/__config__.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/precon copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pysparse/precon/__init__.py -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/precon byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/sparse/__init__.py to __init__.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/sparse/sparseMatrix.py to sparseMatrix.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/sparse/__config__.py to __config__.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/sparse/setup.py to setup.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/sparse/pysparseMatrix.py to pysparseMatrix.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools/poisson.py to poisson.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools/poisson_vec.py to poisson_vec.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools/__init__.py to __init__.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools/sparray.py to sparray.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools/sptime.py to sptime.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/tools/spmatrix_util.py to spmatrix_util.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/version.py to version.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct/setup.py to setup.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct/__init__.py to __init__.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct/pysparseSuperLU.py to pysparseSuperLU.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct/pysparseUmfpack.py to pysparseUmfpack.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct/directSolver.py to directSolver.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/direct/__config__.py to __config__.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/misc/system.py to system.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/misc/__init__.py to __init__.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/setup.py to setup.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/__init__.py to __init__.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/itsolvers/itsolvers_util.py to itsolvers_util.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/itsolvers/setup.py to setup.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/itsolvers/__init__.py to __init__.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/itsolvers/__config__.py to __config__.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/__config__.py to __config__.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/eigen/__init__.py to __init__.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/eigen/__config__.py to __config__.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/eigen/setup.py to setup.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/precon/setup.py to setup.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/precon/__config__.py to __config__.pyc byte-compiling /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/precon/__init__.py to __init__.pyc writing byte-compilation script '/tmp/tmpAfHW56.py' /usr/local/bin/python2.7 -O /tmp/tmpAfHW56.py removing /tmp/tmpAfHW56.py running install_data creating /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include copying /construction/math/py-pysparse/pysparse-f8430bd/pysparse/include/lapack.h -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /construction/math/py-pysparse/pysparse-f8430bd/pysparse/include/bicgstab.h -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /construction/math/py-pysparse/pysparse-f8430bd/pysparse/include/cgs.h -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /construction/math/py-pysparse/pysparse-f8430bd/pysparse/include/blas.h -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /construction/math/py-pysparse/pysparse-f8430bd/pysparse/include/csr_mat.h -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /construction/math/py-pysparse/pysparse-f8430bd/pysparse/include/spmatrix.h -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /construction/math/py-pysparse/pysparse-f8430bd/pysparse/include/minres.h -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /construction/math/py-pysparse/pysparse-f8430bd/pysparse/include/qmrs.h -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /construction/math/py-pysparse/pysparse-f8430bd/pysparse/include/util.h -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /construction/math/py-pysparse/pysparse-f8430bd/pysparse/include/pcg.h -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /construction/math/py-pysparse/pysparse-f8430bd/pysparse/include/spmatrix_api.h -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /construction/math/py-pysparse/pysparse-f8430bd/pysparse/include/ll_mat.h -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /construction/math/py-pysparse/pysparse-f8430bd/pysparse/include/gmres.h -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /construction/math/py-pysparse/pysparse-f8430bd/pysparse/include/fortran.h -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /construction/math/py-pysparse/pysparse-f8430bd/pysparse/include/sss_mat.h -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /construction/math/py-pysparse/pysparse-f8430bd/pysparse/include/mmio.h -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ copying /construction/math/py-pysparse/pysparse-f8430bd/pysparse/include/dsp_defs.h -> /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse/include/ running install_clib customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpkZMMap/tmp creating /tmp/tmpkZMMap/tmp/tmpkZMMap compile options: '-MMD -MF /tmp/tmpkZMMap/file.c.d -c' cc: /tmp/tmpkZMMap/file.c running install_egg_info running egg_info creating pysparse.egg-info writing requirements to pysparse.egg-info/requires.txt writing pysparse.egg-info/PKG-INFO writing top-level names to pysparse.egg-info/top_level.txt writing dependency_links to pysparse.egg-info/dependency_links.txt writing manifest file 'pysparse.egg-info/SOURCES.txt' reading manifest file 'pysparse.egg-info/SOURCES.txt' writing manifest file 'pysparse.egg-info/SOURCES.txt' Copying pysparse.egg-info to /construction/math/py-pysparse/stage/usr/local/lib/python2.7/site-packages/pysparse-1.3.dev0-py2.7.egg-info running install_scripts writing list of installed files to '/construction/math/py-pysparse/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/python2.7/site-packages/pysparse/direct/superlu.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Error: /usr/local/lib/python2.7/site-packages/pysparse/eigen/jdsym.so is linked to /usr/local/lib/libopenblas.so which does not have a SONAME. math/openblas needs to be fixed. Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py27-pysparse-1.3_10 file sizes/checksums [127]: .. done packing files [127]: .. done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Saturday, 15 FEB 2020 at 15:29:40 UTC Duration: 00:02:41