=> Building math/py-pyodeint@py36 Started : Friday, 6 DEC 2019 at 05:44:14 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.1123.g96cc8-DEVELOPMENT #17: Thu Dec 5 01:08:49 PST 2019 root@sting.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.7-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.7-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PYTHON="/usr/local/bin/python3.6" XDG_DATA_HOME=/construction/math/py-pyodeint XDG_CONFIG_HOME=/construction/math/py-pyodeint HOME=/construction/math/py-pyodeint TMPDIR="/tmp" PATH=/construction/math/py-pyodeint/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 CMAKE_PREFIX_PATH="/usr/local" -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/math/py-pyodeint XDG_CONFIG_HOME=/construction/math/py-pyodeint HOME=/construction/math/py-pyodeint TMPDIR="/tmp" PATH=/construction/math/py-pyodeint/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS=" -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/math/py-pyodeint/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PYTHON_INCLUDEDIR=include/python3.6m PYTHON_LIBDIR=lib/python3.6 PYTHON_PLATFORM=dragonfly5 PYTHON_SITELIBDIR=lib/python3.6/site-packages PYTHON_SUFFIX=36 PYTHON_VER=3.6 PYTHON_VERSION=python3.6 PYTHON2="@comment " PYTHON3="" OSREL=5.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/pyodeint" EXAMPLESDIR="share/examples/pyodeint" DATADIR="share/pyodeint" WWWDIR="www/pyodeint" ETCDIR="etc/pyodeint" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/pyodeint DOCSDIR=/usr/local/share/doc/pyodeint EXAMPLESDIR=/usr/local/share/examples/pyodeint WWWDIR=/usr/local/www/pyodeint ETCDIR=/usr/local/etc/pyodeint -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=LiveSystem USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=15 DPORTS_BUILDER= yes DISABLE_LICENSES= yes DEFAULT_VERSIONS= ssl=openssl FORCE_PACKAGE= yes DEVELOPER= yes HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.30.0 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=32 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500709 OSVERSION=9999999 OSREL=5.7 _OSRELEASE=5.7-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py36-pyodeint-0.10.2_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.12.0.txz Installing pkg-1.12.0... Extracting pkg-1.12.0: .......... done ===> py36-pyodeint-0.10.2_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py36-pyodeint-0.10.2_2 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- => pyodeint-0.10.2.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch https://files.pythonhosted.org/packages/source/p/pyodeint/pyodeint-0.10.2.tar.gz pyodeint-0.10.2.tar.gz 99 kB 17 MBps 00s ===> Fetching all distfiles required by py36-pyodeint-0.10.2_2 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py36-pyodeint-0.10.2_2 for building => SHA256 Checksum OK for pyodeint-0.10.2.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py36-pyodeint-0.10.2_2 for building ===> Extracting for py36-pyodeint-0.10.2_2 => SHA256 Checksum OK for pyodeint-0.10.2.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py36-pyodeint-0.10.2_2 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py36-pyodeint-0.10.2_2 depends on package: py36-numpy>0 - not found ===> Installing existing package /packages/All/py36-numpy-1.16.5_1,1.txz Installing py36-numpy-1.16.5_1,1... `-- Installing gcc8-8.3.0_3... | `-- Installing binutils-2.33.1,1... | | `-- Installing gettext-runtime-0.20.1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: . done | | `-- Extracting gettext-runtime-0.20.1: .......... done | `-- Extracting binutils-2.33.1,1: .......... done | `-- Installing gmp-6.1.2_1... | `-- Extracting gmp-6.1.2_1: .......... done | `-- Installing mpc-1.1.0_2... | | `-- Installing mpfr-4.0.2... | | `-- Extracting mpfr-4.0.2: .......... done | `-- Extracting mpc-1.1.0_2: ...... done `-- Extracting gcc8-8.3.0_3: .......... done `-- Installing openblas-0.2.20_11,1... `-- Extracting openblas-0.2.20_11,1: .......... done `-- Installing py36-setuptools-41.4.0... | `-- Installing python36-3.6.9_1... | | `-- Installing expat-2.2.8... | | `-- Extracting expat-2.2.8: .......... done | | `-- Installing libffi-3.2.1_3... | | `-- Extracting libffi-3.2.1_3: .......... done | | `-- Installing ncurses-6.1.20190525... | | `-- Extracting ncurses-6.1.20190525: .......... done | | `-- Installing openssl-1.0.2t,1... | | `-- Extracting openssl-1.0.2t,1: .......... done | | `-- Installing readline-8.0.0... | | `-- Extracting readline-8.0.0: .......... done | `-- Extracting python36-3.6.9_1: .......... done `-- Extracting py36-setuptools-41.4.0: .......... done `-- Installing suitesparse-5.4.0_3... | `-- Installing metis-5.1.0_8... | `-- Extracting metis-5.1.0_8: .......... done | `-- Installing tbb-2019.8... | `-- Extracting tbb-2019.8: .......... done `-- Extracting suitesparse-5.4.0_3: .......... done Extracting py36-numpy-1.16.5_1,1: .......... done ===== Message from gcc8-8.3.0_3: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from openssl-1.0.2t,1: -- Edit /usr/local/openssl/openssl.cnf to fit your needs. -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: OpenSSL 1.0.2 is End-of-Life 2019-12-31 at which time this port will update to 1.1.1 branch. It is scheduled to be removed on or after 2019-12-31. ===== Message from python36-3.6.9_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 ===> py36-pyodeint-0.10.2_2 depends on package: py36-numpy>0 - found ===> Returning to build of py36-pyodeint-0.10.2_2 ===> py36-pyodeint-0.10.2_2 depends on file: /usr/local/include/boost/config.hpp - not found ===> Installing existing package /packages/All/boost-libs-1.71.0_2.txz Installing boost-libs-1.71.0_2... `-- Installing icu-65.1,1... `-- Extracting icu-65.1,1: .......... done Extracting boost-libs-1.71.0_2: .......... done ===== Message from boost-libs-1.71.0_2: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===> py36-pyodeint-0.10.2_2 depends on file: /usr/local/include/boost/config.hpp - found ===> Returning to build of py36-pyodeint-0.10.2_2 ===> py36-pyodeint-0.10.2_2 depends on package: py36-setuptools>0 - found ===> py36-pyodeint-0.10.2_2 depends on file: /usr/local/bin/python3.6 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for py36-pyodeint-0.10.2_2 running config -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py36-pyodeint-0.10.2_2 running build running build_py creating build creating build/lib.dragonfly-5.7-SYNTH-x86_64-3.6 creating build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint copying pyodeint/_util.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint copying pyodeint/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint copying pyodeint/_release.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint creating build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint/tests copying pyodeint/tests/test_odeint_numpy.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint/tests copying pyodeint/tests/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint/tests running egg_info writing pyodeint.egg-info/PKG-INFO writing dependency_links to pyodeint.egg-info/dependency_links.txt writing requirements to pyodeint.egg-info/requires.txt writing top-level names to pyodeint.egg-info/top_level.txt reading manifest file 'pyodeint.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pyodeint.egg-info/SOURCES.txt' copying pyodeint/_odeint.cpp -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint copying pyodeint/_odeint.pyx -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint creating build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint/include copying pyodeint/include/odeint_anyode.hpp -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint/include copying pyodeint/include/odeint_anyode.pxd -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint/include copying pyodeint/include/odeint_anyode_nogil.pxd -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint/include copying pyodeint/include/odeint_anyode_parallel.hpp -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint/include copying pyodeint/include/odeint_anyode_parallel.pxd -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint/include creating build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint/include/boost creating build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint/include/boost/numeric creating build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint/include/boost/numeric/odeint creating build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint/include/boost/numeric/odeint/stepper copying pyodeint/include/boost/numeric/odeint/stepper/rosenbrock4_controller.hpp -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint/include/boost/numeric/odeint/stepper running build_ext building 'pyodeint._odeint' extension creating build/temp.dragonfly-5.7-SYNTH-x86_64-3.6 creating build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint cc -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -DANYODE_NO_LAPACK=1 -Ipyodeint/include -I/usr/local/lib/python3.6/site-packages/numpy/core/include -Iexternal/anyode/include -I/usr/local/include/python3.6m -c pyodeint/_odeint.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint/_odeint.o -std=c++11 In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from pyodeint/_odeint.cpp:651: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ c++ -shared -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint/_odeint.o -L/usr/local/lib -lpython3.6m -o build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint/_odeint.so -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py36-pyodeint-0.10.2_2 depends on package: py36-numpy>0 - found ===> py36-pyodeint-0.10.2_2 depends on package: py36-setuptools>0 - found ===> py36-pyodeint-0.10.2_2 depends on file: /usr/local/bin/python3.6 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py36-pyodeint-0.10.2_2 ===> Generating temporary packing list running install running build running build_py running egg_info writing pyodeint.egg-info/PKG-INFO writing dependency_links to pyodeint.egg-info/dependency_links.txt writing requirements to pyodeint.egg-info/requires.txt writing top-level names to pyodeint.egg-info/top_level.txt reading manifest file 'pyodeint.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pyodeint.egg-info/SOURCES.txt' running build_ext running install_lib creating /construction/math/py-pyodeint/stage/usr/local/lib/python3.6 creating /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages creating /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint/_odeint.pyx -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint creating /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/include copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint/include/odeint_anyode_nogil.pxd -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/include copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint/include/odeint_anyode.hpp -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/include copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint/include/odeint_anyode.pxd -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/include creating /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/include/boost creating /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/include/boost/numeric creating /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/include/boost/numeric/odeint creating /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/include/boost/numeric/odeint/stepper copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint/include/boost/numeric/odeint/stepper/rosenbrock4_controller.hpp -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/include/boost/numeric/odeint/stepper copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint/include/odeint_anyode_parallel.hpp -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/include copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint/include/odeint_anyode_parallel.pxd -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/include copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint/_util.py -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint creating /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint/tests/__init__.py -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint/tests/test_odeint_numpy.py -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint/__init__.py -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint/_release.py -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint/_odeint.cpp -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.6/pyodeint/_odeint.so -> /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint byte-compiling /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/_util.py to _util.cpython-36.pyc byte-compiling /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/tests/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/tests/test_odeint_numpy.py to test_odeint_numpy.cpython-36.pyc byte-compiling /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint/_release.py to _release.cpython-36.pyc writing byte-compilation script '/tmp/tmpcp1gntgd.py' /usr/local/bin/python3.6 /tmp/tmpcp1gntgd.py removing /tmp/tmpcp1gntgd.py running install_egg_info Copying pyodeint.egg-info to /construction/math/py-pyodeint/stage/usr/local/lib/python3.6/site-packages/pyodeint-0.10.2-py3.6.egg-info running install_scripts writing list of installed files to '/construction/math/py-pyodeint/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/python3.6/site-packages/pyodeint/_odeint.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py36-pyodeint-0.10.2_2 file sizes/checksums [29]: . done packing files [29]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Friday, 6 DEC 2019 at 05:47:25 UTC Duration: 00:03:11