=> Building math/py-pyodeint@py27 Started : Saturday, 15 FEB 2020 at 10:22:46 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.1432.g9cd86-DEVELOPMENT #23: Thu Feb 13 14:43:04 PST 2020 root@sting.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.7-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.7-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/construction/math/py-pyodeint XDG_CONFIG_HOME=/construction/math/py-pyodeint HOME=/construction/math/py-pyodeint TMPDIR="/tmp" PATH=/construction/math/py-pyodeint/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 CMAKE_PREFIX_PATH="/usr/local" -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/math/py-pyodeint XDG_CONFIG_HOME=/construction/math/py-pyodeint HOME=/construction/math/py-pyodeint TMPDIR="/tmp" PATH=/construction/math/py-pyodeint/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS=" -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/math/py-pyodeint/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=dragonfly5 PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " OSREL=5.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/pyodeint" EXAMPLESDIR="share/examples/pyodeint" DATADIR="share/pyodeint" WWWDIR="www/pyodeint" ETCDIR="etc/pyodeint" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/pyodeint DOCSDIR=/usr/local/share/doc/pyodeint EXAMPLESDIR=/usr/local/share/examples/pyodeint WWWDIR=/usr/local/www/pyodeint ETCDIR=/usr/local/etc/pyodeint -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=LiveSystem USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=15 DPORTS_BUILDER= yes DISABLE_LICENSES= yes DEFAULT_VERSIONS= ssl=openssl FORCE_PACKAGE= yes DEVELOPER= yes HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.30.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=32 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500709 OSVERSION=9999999 OSREL=5.7 _OSRELEASE=5.7-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py27-pyodeint-0.10.2_3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.12.0_1.txz Installing pkg-1.12.0_1... Extracting pkg-1.12.0_1: .......... done ===> py27-pyodeint-0.10.2_3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py27-pyodeint-0.10.2_3 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py27-pyodeint-0.10.2_3 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py27-pyodeint-0.10.2_3 for building => SHA256 Checksum OK for pyodeint-0.10.2.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py27-pyodeint-0.10.2_3 for building ===> Extracting for py27-pyodeint-0.10.2_3 => SHA256 Checksum OK for pyodeint-0.10.2.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py27-pyodeint-0.10.2_3 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py27-pyodeint-0.10.2_3 depends on package: py27-numpy>=1.15,1<1.19,1 - not found ===> Installing existing package /packages/All/py27-numpy-1.16.5_4,1.txz Installing py27-numpy-1.16.5_4,1... `-- Installing gcc8-8.3.0_3... | `-- Installing binutils-2.33.1_2,1... | | `-- Installing gettext-runtime-0.20.1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: . done | | `-- Extracting gettext-runtime-0.20.1: .......... done | `-- Extracting binutils-2.33.1_2,1: .......... done | `-- Installing gmp-6.1.2_1... | `-- Extracting gmp-6.1.2_1: .......... done | `-- Installing mpc-1.1.0_2... | | `-- Installing mpfr-4.0.2... | | `-- Extracting mpfr-4.0.2: .......... done | `-- Extracting mpc-1.1.0_2: ...... done `-- Extracting gcc8-8.3.0_3: .......... done `-- Installing openblas-0.3.7_2,1... `-- Extracting openblas-0.3.7_2,1: .......... done `-- Installing py27-setuptools-44.0.0... | `-- Installing python27-2.7.17_1... | | `-- Installing expat-2.2.8... | | `-- Extracting expat-2.2.8: .......... done | | `-- Installing libffi-3.2.1_3... | | `-- Extracting libffi-3.2.1_3: .......... done | | `-- Installing ncurses-6.1.20190525... | | `-- Extracting ncurses-6.1.20190525: .......... done | | `-- Installing openssl-1.1.1d,1... | | `-- Extracting openssl-1.1.1d,1: .......... done | | `-- Installing readline-8.0.1... | | `-- Extracting readline-8.0.1: .......... done | `-- Extracting python27-2.7.17_1: .......... done `-- Extracting py27-setuptools-44.0.0: .......... done `-- Installing suitesparse-5.4.0_5... | `-- Installing metis-5.1.0_8... | `-- Extracting metis-5.1.0_8: .......... done | `-- Installing tbb-2020.1... | `-- Extracting tbb-2020.1: .......... done `-- Extracting suitesparse-5.4.0_5: .......... done Extracting py27-numpy-1.16.5_4,1: .......... done ===== Message from gcc8-8.3.0_3: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from python27-2.7.17_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter ===== Message from py27-setuptools-44.0.0: -- Only /usr/local/bin/easy_install-2.7 script has been installed since Python 2.7 is not the default Python version. ===> py27-pyodeint-0.10.2_3 depends on package: py27-numpy>=1.15,1<1.19,1 - found ===> Returning to build of py27-pyodeint-0.10.2_3 ===> py27-pyodeint-0.10.2_3 depends on file: /usr/local/include/boost/config.hpp - not found ===> Installing existing package /packages/All/boost-libs-1.72.0.txz Installing boost-libs-1.72.0... `-- Installing icu-65.1,1... `-- Extracting icu-65.1,1: .......... done Extracting boost-libs-1.72.0: .......... done ===== Message from boost-libs-1.72.0: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===> py27-pyodeint-0.10.2_3 depends on file: /usr/local/include/boost/config.hpp - found ===> Returning to build of py27-pyodeint-0.10.2_3 ===> py27-pyodeint-0.10.2_3 depends on package: py27-setuptools>0 - found ===> py27-pyodeint-0.10.2_3 depends on file: /usr/local/bin/python2.7 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for py27-pyodeint-0.10.2_3 running config -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py27-pyodeint-0.10.2_3 running build running build_py creating build creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7 creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint copying pyodeint/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint copying pyodeint/_release.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint copying pyodeint/_util.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint/tests copying pyodeint/tests/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint/tests copying pyodeint/tests/test_odeint_numpy.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint/tests running egg_info writing requirements to pyodeint.egg-info/requires.txt writing pyodeint.egg-info/PKG-INFO writing top-level names to pyodeint.egg-info/top_level.txt writing dependency_links to pyodeint.egg-info/dependency_links.txt reading manifest file 'pyodeint.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pyodeint.egg-info/SOURCES.txt' copying pyodeint/_odeint.cpp -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint copying pyodeint/_odeint.pyx -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint/include copying pyodeint/include/odeint_anyode.hpp -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint/include copying pyodeint/include/odeint_anyode.pxd -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint/include copying pyodeint/include/odeint_anyode_nogil.pxd -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint/include copying pyodeint/include/odeint_anyode_parallel.hpp -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint/include copying pyodeint/include/odeint_anyode_parallel.pxd -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint/include creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint/include/boost creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint/include/boost/numeric creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint/include/boost/numeric/odeint creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint/include/boost/numeric/odeint/stepper copying pyodeint/include/boost/numeric/odeint/stepper/rosenbrock4_controller.hpp -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint/include/boost/numeric/odeint/stepper running build_ext building 'pyodeint._odeint' extension creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7 creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -DANYODE_NO_LAPACK=1 -Ipyodeint/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -Iexternal/anyode/include -I/usr/local/include/python2.7 -c pyodeint/_odeint.cpp -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint/_odeint.o -std=c++11 In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from pyodeint/_odeint.cpp:651: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ c++ -shared -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint/_odeint.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint/_odeint.so -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py27-pyodeint-0.10.2_3 depends on package: py27-numpy>=1.15,1<1.19,1 - found ===> py27-pyodeint-0.10.2_3 depends on package: py27-setuptools>0 - found ===> py27-pyodeint-0.10.2_3 depends on file: /usr/local/bin/python2.7 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py27-pyodeint-0.10.2_3 ===> Generating temporary packing list running install running build running build_py running egg_info writing requirements to pyodeint.egg-info/requires.txt writing pyodeint.egg-info/PKG-INFO writing top-level names to pyodeint.egg-info/top_level.txt writing dependency_links to pyodeint.egg-info/dependency_links.txt reading manifest file 'pyodeint.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pyodeint.egg-info/SOURCES.txt' running build_ext running install_lib creating /construction/math/py-pyodeint/stage/usr/local/lib/python2.7 creating /construction/math/py-pyodeint/stage/usr/local/lib/python2.7/site-packages creating /construction/math/py-pyodeint/stage/usr/local/lib/python2.7/site-packages/pyodeint copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint/_odeint.so -> /construction/math/py-pyodeint/stage/usr/local/lib/python2.7/site-packages/pyodeint creating /construction/math/py-pyodeint/stage/usr/local/lib/python2.7/site-packages/pyodeint/include copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint/include/odeint_anyode_parallel.pxd -> /construction/math/py-pyodeint/stage/usr/local/lib/python2.7/site-packages/pyodeint/include copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint/include/odeint_anyode_parallel.hpp -> /construction/math/py-pyodeint/stage/usr/local/lib/python2.7/site-packages/pyodeint/include copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint/include/odeint_anyode_nogil.pxd -> /construction/math/py-pyodeint/stage/usr/local/lib/python2.7/site-packages/pyodeint/include copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint/include/odeint_anyode.hpp -> /construction/math/py-pyodeint/stage/usr/local/lib/python2.7/site-packages/pyodeint/include copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint/include/odeint_anyode.pxd -> /construction/math/py-pyodeint/stage/usr/local/lib/python2.7/site-packages/pyodeint/include creating /construction/math/py-pyodeint/stage/usr/local/lib/python2.7/site-packages/pyodeint/include/boost creating /construction/math/py-pyodeint/stage/usr/local/lib/python2.7/site-packages/pyodeint/include/boost/numeric creating /construction/math/py-pyodeint/stage/usr/local/lib/python2.7/site-packages/pyodeint/include/boost/numeric/odeint creating /construction/math/py-pyodeint/stage/usr/local/lib/python2.7/site-packages/pyodeint/include/boost/numeric/odeint/stepper copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint/include/boost/numeric/odeint/stepper/rosenbrock4_controller.hpp -> /construction/math/py-pyodeint/stage/usr/local/lib/python2.7/site-packages/pyodeint/include/boost/numeric/odeint/stepper copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint/_odeint.pyx -> /construction/math/py-pyodeint/stage/usr/local/lib/python2.7/site-packages/pyodeint copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint/_odeint.cpp -> /construction/math/py-pyodeint/stage/usr/local/lib/python2.7/site-packages/pyodeint copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint/__init__.py -> /construction/math/py-pyodeint/stage/usr/local/lib/python2.7/site-packages/pyodeint copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint/_util.py -> /construction/math/py-pyodeint/stage/usr/local/lib/python2.7/site-packages/pyodeint copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint/_release.py -> /construction/math/py-pyodeint/stage/usr/local/lib/python2.7/site-packages/pyodeint creating /construction/math/py-pyodeint/stage/usr/local/lib/python2.7/site-packages/pyodeint/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint/tests/test_odeint_numpy.py -> /construction/math/py-pyodeint/stage/usr/local/lib/python2.7/site-packages/pyodeint/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/pyodeint/tests/__init__.py -> /construction/math/py-pyodeint/stage/usr/local/lib/python2.7/site-packages/pyodeint/tests byte-compiling /construction/math/py-pyodeint/stage/usr/local/lib/python2.7/site-packages/pyodeint/__init__.py to __init__.pyc byte-compiling /construction/math/py-pyodeint/stage/usr/local/lib/python2.7/site-packages/pyodeint/_util.py to _util.pyc byte-compiling /construction/math/py-pyodeint/stage/usr/local/lib/python2.7/site-packages/pyodeint/_release.py to _release.pyc byte-compiling /construction/math/py-pyodeint/stage/usr/local/lib/python2.7/site-packages/pyodeint/tests/test_odeint_numpy.py to test_odeint_numpy.pyc byte-compiling /construction/math/py-pyodeint/stage/usr/local/lib/python2.7/site-packages/pyodeint/tests/__init__.py to __init__.pyc writing byte-compilation script '/tmp/tmplOi3E5.py' /usr/local/bin/python2.7 -O /tmp/tmplOi3E5.py removing /tmp/tmplOi3E5.py running install_egg_info Copying pyodeint.egg-info to /construction/math/py-pyodeint/stage/usr/local/lib/python2.7/site-packages/pyodeint-0.10.2-py2.7.egg-info running install_scripts writing list of installed files to '/construction/math/py-pyodeint/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/python2.7/site-packages/pyodeint/_odeint.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py27-pyodeint-0.10.2_3 file sizes/checksums [29]: . done packing files [29]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Saturday, 15 FEB 2020 at 10:23:58 UTC Duration: 00:01:11