=> Building math/py-pynndescent@py37 Started : Monday, 17 FEB 2020 at 14:43:59 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.1432.g9cd86-DEVELOPMENT #23: Thu Feb 13 14:43:04 PST 2020 root@sting.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.7-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.7-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PYTHON="/usr/local/bin/python3.7" XDG_DATA_HOME=/construction/math/py-pynndescent XDG_CONFIG_HOME=/construction/math/py-pynndescent HOME=/construction/math/py-pynndescent TMPDIR="/tmp" PATH=/construction/math/py-pynndescent/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- XDG_DATA_HOME=/construction/math/py-pynndescent XDG_CONFIG_HOME=/construction/math/py-pynndescent HOME=/construction/math/py-pynndescent TMPDIR="/tmp" PATH=/construction/math/py-pynndescent/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/math/py-pynndescent/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PYTHON_INCLUDEDIR=include/python3.7m PYTHON_LIBDIR=lib/python3.7 PYTHON_PLATFORM=dragonfly5 PYTHON_SITELIBDIR=lib/python3.7/site-packages PYTHON_SUFFIX=37 PYTHON_VER=3.7 PYTHON_VERSION=python3.7 PYTHON2="@comment " PYTHON3="" OSREL=5.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/pynndescent" EXAMPLESDIR="share/examples/pynndescent" DATADIR="share/pynndescent" WWWDIR="www/pynndescent" ETCDIR="etc/pynndescent" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/pynndescent DOCSDIR=/usr/local/share/doc/pynndescent EXAMPLESDIR=/usr/local/share/examples/pynndescent WWWDIR=/usr/local/www/pynndescent ETCDIR=/usr/local/etc/pynndescent -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=LiveSystem USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=15 DPORTS_BUILDER= yes DISABLE_LICENSES= yes DEFAULT_VERSIONS= ssl=openssl FORCE_PACKAGE= yes DEVELOPER= yes HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.30.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=32 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500709 OSVERSION=9999999 OSREL=5.7 _OSRELEASE=5.7-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py37-pynndescent-0.4.5 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.12.0_1.txz Installing pkg-1.12.0_1... Extracting pkg-1.12.0_1: .......... done ===> py37-pynndescent-0.4.5 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py37-pynndescent-0.4.5 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- => pynndescent-0.4.5.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch https://files.pythonhosted.org/packages/source/p/pynndescent/pynndescent-0.4.5.tar.gz pynndescent-0.4.5.tar.gz 1107 kB 28 MBps 00s ===> Fetching all distfiles required by py37-pynndescent-0.4.5 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py37-pynndescent-0.4.5 for building => SHA256 Checksum OK for pynndescent-0.4.5.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py37-pynndescent-0.4.5 for building ===> Extracting for py37-pynndescent-0.4.5 => SHA256 Checksum OK for pynndescent-0.4.5.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py37-pynndescent-0.4.5 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py37-pynndescent-0.4.5 depends on package: py37-setuptools>0 - not found ===> Installing existing package /packages/All/py37-setuptools-44.0.0.txz Installing py37-setuptools-44.0.0... `-- Installing python37-3.7.6... | `-- Installing expat-2.2.8... | `-- Extracting expat-2.2.8: .......... done | `-- Installing gettext-runtime-0.20.1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: . done | `-- Extracting gettext-runtime-0.20.1: .......... done | `-- Installing libffi-3.2.1_3... | `-- Extracting libffi-3.2.1_3: .......... done | `-- Installing ncurses-6.1.20190525... | `-- Extracting ncurses-6.1.20190525: .......... done | `-- Installing openssl-1.1.1d,1... | `-- Extracting openssl-1.1.1d,1: .......... done | `-- Installing readline-8.0.1... | `-- Extracting readline-8.0.1: .......... done `-- Extracting python37-3.7.6: .......... done Extracting py37-setuptools-44.0.0: .......... done ===== Message from python37-3.7.6: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 ===> py37-pynndescent-0.4.5 depends on package: py37-setuptools>0 - found ===> Returning to build of py37-pynndescent-0.4.5 ===> py37-pynndescent-0.4.5 depends on file: /usr/local/bin/python3.7 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for py37-pynndescent-0.4.5 running config -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py37-pynndescent-0.4.5 running build running build_py creating build creating build/lib creating build/lib/pynndescent copying pynndescent/__init__.py -> build/lib/pynndescent copying pynndescent/threaded.py -> build/lib/pynndescent copying pynndescent/sparse_threaded.py -> build/lib/pynndescent copying pynndescent/threaded_rp_trees.py -> build/lib/pynndescent copying pynndescent/distances.py -> build/lib/pynndescent copying pynndescent/sparse_nndescent.py -> build/lib/pynndescent copying pynndescent/sparse.py -> build/lib/pynndescent copying pynndescent/pynndescent_.py -> build/lib/pynndescent copying pynndescent/utils.py -> build/lib/pynndescent copying pynndescent/rp_trees.py -> build/lib/pynndescent -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py37-pynndescent-0.4.5 depends on package: py37-joblib>=0.11 - not found ===> Installing existing package /packages/All/py37-joblib-0.13.0.txz Installing py37-joblib-0.13.0... Extracting py37-joblib-0.13.0: .......... done ===> py37-pynndescent-0.4.5 depends on package: py37-joblib>=0.11 - found ===> Returning to build of py37-pynndescent-0.4.5 ===> py37-pynndescent-0.4.5 depends on package: py37-llvmlite>=0.30 - not found ===> Installing existing package /packages/All/py37-llvmlite-0.31.0.txz Installing py37-llvmlite-0.31.0... `-- Installing gcc8-8.3.0_3... | `-- Installing binutils-2.33.1_2,1... | `-- Extracting binutils-2.33.1_2,1: .......... done | `-- Installing gmp-6.1.2_1... | `-- Extracting gmp-6.1.2_1: .......... done | `-- Installing mpc-1.1.0_2... | | `-- Installing mpfr-4.0.2... | | `-- Extracting mpfr-4.0.2: .......... done | `-- Extracting mpc-1.1.0_2: ...... done `-- Extracting gcc8-8.3.0_3: .......... done `-- Installing llvm80-8.0.1_3... | `-- Installing libedit-3.1.20191211,1... | `-- Extracting libedit-3.1.20191211,1: .......... done | `-- Installing libxml2-2.9.10... | `-- Extracting libxml2-2.9.10: .......... done | `-- Installing perl5-5.30.1... | `-- Extracting perl5-5.30.1: .......... done `-- Extracting llvm80-8.0.1_3: .......... done Extracting py37-llvmlite-0.31.0: .......... done ===== Message from gcc8-8.3.0_3: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from perl5-5.30.1: -- The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. ===> py37-pynndescent-0.4.5 depends on package: py37-llvmlite>=0.30 - found ===> Returning to build of py37-pynndescent-0.4.5 ===> py37-pynndescent-0.4.5 depends on package: py37-numba>=0.46 - not found ===> Installing existing package /packages/All/py37-numba-0.47.0.txz Installing py37-numba-0.47.0... `-- Installing tbb-2020.1... `-- Extracting tbb-2020.1: .......... done Extracting py37-numba-0.47.0: .......... done ===> py37-pynndescent-0.4.5 depends on package: py37-numba>=0.46 - found ===> Returning to build of py37-pynndescent-0.4.5 ===> py37-pynndescent-0.4.5 depends on package: py37-scikit-learn>=0.18 - not found ===> Installing existing package /packages/All/py37-scikit-learn-0.22.txz Installing py37-scikit-learn-0.22... `-- Installing py37-numpy-1.16.5_4,1... | `-- Installing openblas-0.3.7_2,1... | `-- Extracting openblas-0.3.7_2,1: .......... done | `-- Installing suitesparse-5.4.0_5... | | `-- Installing metis-5.1.0_8... | | `-- Extracting metis-5.1.0_8: .......... done | `-- Extracting suitesparse-5.4.0_5: .......... done `-- Extracting py37-numpy-1.16.5_4,1: .......... done `-- Installing py37-scipy-1.2.2_1... `-- Extracting py37-scipy-1.2.2_1: .......... done Extracting py37-scikit-learn-0.22: .......... done ===> py37-pynndescent-0.4.5 depends on package: py37-scikit-learn>=0.18 - found ===> Returning to build of py37-pynndescent-0.4.5 ===> py37-pynndescent-0.4.5 depends on package: py37-scipy>=1.0 - found ===> py37-pynndescent-0.4.5 depends on package: py37-setuptools>0 - found ===> py37-pynndescent-0.4.5 depends on file: /usr/local/bin/python3.7 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py37-pynndescent-0.4.5 ===> Generating temporary packing list running install running build running build_py running install_lib creating /construction/math/py-pynndescent/stage/usr/local/lib/python3.7 creating /construction/math/py-pynndescent/stage/usr/local/lib/python3.7/site-packages creating /construction/math/py-pynndescent/stage/usr/local/lib/python3.7/site-packages/pynndescent copying build/lib/pynndescent/threaded_rp_trees.py -> /construction/math/py-pynndescent/stage/usr/local/lib/python3.7/site-packages/pynndescent copying build/lib/pynndescent/sparse_threaded.py -> /construction/math/py-pynndescent/stage/usr/local/lib/python3.7/site-packages/pynndescent copying build/lib/pynndescent/threaded.py -> /construction/math/py-pynndescent/stage/usr/local/lib/python3.7/site-packages/pynndescent copying build/lib/pynndescent/__init__.py -> /construction/math/py-pynndescent/stage/usr/local/lib/python3.7/site-packages/pynndescent copying build/lib/pynndescent/rp_trees.py -> /construction/math/py-pynndescent/stage/usr/local/lib/python3.7/site-packages/pynndescent copying build/lib/pynndescent/utils.py -> /construction/math/py-pynndescent/stage/usr/local/lib/python3.7/site-packages/pynndescent copying build/lib/pynndescent/pynndescent_.py -> /construction/math/py-pynndescent/stage/usr/local/lib/python3.7/site-packages/pynndescent copying build/lib/pynndescent/sparse.py -> /construction/math/py-pynndescent/stage/usr/local/lib/python3.7/site-packages/pynndescent copying build/lib/pynndescent/sparse_nndescent.py -> /construction/math/py-pynndescent/stage/usr/local/lib/python3.7/site-packages/pynndescent copying build/lib/pynndescent/distances.py -> /construction/math/py-pynndescent/stage/usr/local/lib/python3.7/site-packages/pynndescent byte-compiling /construction/math/py-pynndescent/stage/usr/local/lib/python3.7/site-packages/pynndescent/threaded_rp_trees.py to threaded_rp_trees.cpython-37.pyc byte-compiling /construction/math/py-pynndescent/stage/usr/local/lib/python3.7/site-packages/pynndescent/sparse_threaded.py to sparse_threaded.cpython-37.pyc byte-compiling /construction/math/py-pynndescent/stage/usr/local/lib/python3.7/site-packages/pynndescent/threaded.py to threaded.cpython-37.pyc byte-compiling /construction/math/py-pynndescent/stage/usr/local/lib/python3.7/site-packages/pynndescent/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/math/py-pynndescent/stage/usr/local/lib/python3.7/site-packages/pynndescent/rp_trees.py to rp_trees.cpython-37.pyc byte-compiling /construction/math/py-pynndescent/stage/usr/local/lib/python3.7/site-packages/pynndescent/utils.py to utils.cpython-37.pyc byte-compiling /construction/math/py-pynndescent/stage/usr/local/lib/python3.7/site-packages/pynndescent/pynndescent_.py to pynndescent_.cpython-37.pyc byte-compiling /construction/math/py-pynndescent/stage/usr/local/lib/python3.7/site-packages/pynndescent/sparse.py to sparse.cpython-37.pyc byte-compiling /construction/math/py-pynndescent/stage/usr/local/lib/python3.7/site-packages/pynndescent/sparse_nndescent.py to sparse_nndescent.cpython-37.pyc byte-compiling /construction/math/py-pynndescent/stage/usr/local/lib/python3.7/site-packages/pynndescent/distances.py to distances.cpython-37.pyc writing byte-compilation script '/tmp/tmpgj5_558v.py' /usr/local/bin/python3.7 /tmp/tmpgj5_558v.py removing /tmp/tmpgj5_558v.py running install_egg_info running egg_info writing pynndescent.egg-info/PKG-INFO writing dependency_links to pynndescent.egg-info/dependency_links.txt writing requirements to pynndescent.egg-info/requires.txt writing top-level names to pynndescent.egg-info/top_level.txt reading manifest file 'pynndescent.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'pynndescent/__pycache__' writing manifest file 'pynndescent.egg-info/SOURCES.txt' Copying pynndescent.egg-info to /construction/math/py-pynndescent/stage/usr/local/lib/python3.7/site-packages/pynndescent-0.4.5-py3.7.egg-info running install_scripts writing list of installed files to '/construction/math/py-pynndescent/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py37-pynndescent-0.4.5 file sizes/checksums [36]: . done packing files [36]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Monday, 17 FEB 2020 at 14:47:08 UTC Duration: 00:03:09