=> Building math/py-petsc4py@py27 Started : Saturday, 15 FEB 2020 at 15:18:41 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.1432.g9cd86-DEVELOPMENT #23: Thu Feb 13 14:43:04 PST 2020 root@sting.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.7-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.7-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/construction/math/py-petsc4py XDG_CONFIG_HOME=/construction/math/py-petsc4py HOME=/construction/math/py-petsc4py TMPDIR="/tmp" PATH=/construction/math/py-petsc4py/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- PETSC_DIR=/usr/local XDG_DATA_HOME=/construction/math/py-petsc4py XDG_CONFIG_HOME=/construction/math/py-petsc4py HOME=/construction/math/py-petsc4py TMPDIR="/tmp" PATH=/construction/math/py-petsc4py/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/math/py-petsc4py/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=dragonfly5 PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " OSREL=5.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/petsc4py" EXAMPLESDIR="share/examples/petsc4py" DATADIR="share/petsc4py" WWWDIR="www/petsc4py" ETCDIR="etc/petsc4py" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/petsc4py DOCSDIR=/usr/local/share/doc/petsc4py EXAMPLESDIR=/usr/local/share/examples/petsc4py WWWDIR=/usr/local/www/petsc4py ETCDIR=/usr/local/etc/petsc4py -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=LiveSystem USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=15 DPORTS_BUILDER= yes DISABLE_LICENSES= yes DEFAULT_VERSIONS= ssl=openssl FORCE_PACKAGE= yes DEVELOPER= yes HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.30.1 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=32 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500709 OSVERSION=9999999 OSREL=5.7 _OSRELEASE=5.7-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py27-petsc4py-3.10.0_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.12.0_1.txz Installing pkg-1.12.0_1... Extracting pkg-1.12.0_1: .......... done ===> py27-petsc4py-3.10.0_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py27-petsc4py-3.10.0_2 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py27-petsc4py-3.10.0_2 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py27-petsc4py-3.10.0_2 for building => SHA256 Checksum OK for petsc4py-3.10.0.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> Fetching all distfiles required by py27-petsc4py-3.10.0_2 for building ===> Extracting for py27-petsc4py-3.10.0_2 => SHA256 Checksum OK for petsc4py-3.10.0.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py27-petsc4py-3.10.0_2 -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py27-petsc4py-3.10.0_2 depends on package: py27-numpy>=1.15,1<1.19,1 - not found ===> Installing existing package /packages/All/py27-numpy-1.16.5_4,1.txz Installing py27-numpy-1.16.5_4,1... `-- Installing gcc8-8.3.0_3... | `-- Installing binutils-2.33.1_2,1... | | `-- Installing gettext-runtime-0.20.1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: . done | | `-- Extracting gettext-runtime-0.20.1: .......... done | `-- Extracting binutils-2.33.1_2,1: .......... done | `-- Installing gmp-6.1.2_1... | `-- Extracting gmp-6.1.2_1: .......... done | `-- Installing mpc-1.1.0_2... | | `-- Installing mpfr-4.0.2... | | `-- Extracting mpfr-4.0.2: .......... done | `-- Extracting mpc-1.1.0_2: ...... done `-- Extracting gcc8-8.3.0_3: .......... done `-- Installing openblas-0.3.7_2,1... `-- Extracting openblas-0.3.7_2,1: .......... done `-- Installing py27-setuptools-44.0.0... | `-- Installing python27-2.7.17_1... | | `-- Installing expat-2.2.8... | | `-- Extracting expat-2.2.8: .......... done | | `-- Installing libffi-3.2.1_3... | | `-- Extracting libffi-3.2.1_3: .......... done | | `-- Installing ncurses-6.1.20190525... | | `-- Extracting ncurses-6.1.20190525: .......... done | | `-- Installing openssl-1.1.1d,1... | | `-- Extracting openssl-1.1.1d,1: .......... done | | `-- Installing readline-8.0.1... | | `-- Extracting readline-8.0.1: .......... done | `-- Extracting python27-2.7.17_1: .......... done `-- Extracting py27-setuptools-44.0.0: .......... done `-- Installing suitesparse-5.4.0_5... | `-- Installing metis-5.1.0_8... | `-- Extracting metis-5.1.0_8: .......... done | `-- Installing tbb-2020.1... | `-- Extracting tbb-2020.1: .......... done `-- Extracting suitesparse-5.4.0_5: .......... done Extracting py27-numpy-1.16.5_4,1: .......... done ===== Message from gcc8-8.3.0_3: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from python27-2.7.17_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter ===== Message from py27-setuptools-44.0.0: -- Only /usr/local/bin/easy_install-2.7 script has been installed since Python 2.7 is not the default Python version. ===> py27-petsc4py-3.10.0_2 depends on package: py27-numpy>=1.15,1<1.19,1 - found ===> Returning to build of py27-petsc4py-3.10.0_2 ===> py27-petsc4py-3.10.0_2 depends on package: py27-setuptools>0 - found ===> py27-petsc4py-3.10.0_2 depends on file: /usr/local/bin/python2.7 - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- ===> py27-petsc4py-3.10.0_2 depends on shared library: libmpich.so - not found ===> Installing existing package /packages/All/mpich-3.2.1_6.txz Installing mpich-3.2.1_6... `-- Installing hwloc-1.11.11... | `-- Installing libpciaccess-0.16... | | `-- Installing pciids-20200125... | | `-- Extracting pciids-20200125: ..... done | `-- Extracting libpciaccess-0.16: ...... done | `-- Installing libxml2-2.9.10... | `-- Extracting libxml2-2.9.10: .......... done `-- Extracting hwloc-1.11.11: .......... done `-- Installing perl5-5.30.1... `-- Extracting perl5-5.30.1: .......... done Extracting mpich-3.2.1_6: .......... done ===== Message from perl5-5.30.1: -- The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. ===== Message from mpich-3.2.1_6: -- ===> NOTICE: The mpich port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> py27-petsc4py-3.10.0_2 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so) ===> Returning to build of py27-petsc4py-3.10.0_2 ===> py27-petsc4py-3.10.0_2 depends on shared library: libpetsc.so - not found ===> Installing existing package /packages/All/PETSc-3.10.2_4.txz Installing PETSc-3.10.2_4... `-- Installing blas-3.5.0_6... `-- Extracting blas-3.5.0_6: .... done `-- Installing lapack-3.5.0_8... `-- Extracting lapack-3.5.0_8: .......... done `-- Installing libX11-1.6.9,1... | `-- Installing libXau-1.0.9... | `-- Extracting libXau-1.0.9: .......... done | `-- Installing libXdmcp-1.1.3... | | `-- Installing xorgproto-2019.2... | | `-- Extracting xorgproto-2019.2: .......... done | `-- Extracting libXdmcp-1.1.3: ...... done | `-- Installing libxcb-1.13.1... | | `-- Installing libpthread-stubs-0.4... | | `-- Extracting libpthread-stubs-0.4: .... done | `-- Extracting libxcb-1.13.1: .......... done `-- Extracting libX11-1.6.9,1: .......... done Extracting PETSc-3.10.2_4: .......... done ===> py27-petsc4py-3.10.0_2 depends on shared library: libpetsc.so - found (/usr/local/lib/libpetsc.so) ===> Returning to build of py27-petsc4py-3.10.0_2 -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> Configuring for py27-petsc4py-3.10.0_2 running config ---------------------------------------------------------------------- PETSC_DIR: /usr/local ---------------------------------------------------------------------- PETSC_ARCH: * scalar-type: real * precision: double * language: CONLY * compiler: /usr/local/bin/mpicc * linker: /usr/local/bin/mpicc ---------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py27-petsc4py-3.10.0_2 running build running build_src running build_py creating build creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7 creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/petsc4py copying src/__main__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/petsc4py copying src/PETSc.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/petsc4py copying src/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/petsc4py creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/petsc4py/lib copying src/lib/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/petsc4py/lib creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/petsc4py/include creating build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/petsc4py/include/petsc4py copying src/include/petsc4py/petsc4py.h -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/petsc4py/include/petsc4py copying src/include/petsc4py/numpy.h -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/petsc4py/include/petsc4py copying src/include/petsc4py/petsc4py.PETSc_api.h -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/petsc4py/include/petsc4py copying src/include/petsc4py/petsc4py.PETSc.h -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/petsc4py/include/petsc4py copying src/include/petsc4py/petsc4py.i -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/petsc4py/include/petsc4py copying src/include/petsc4py/PETSc.pxd -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/petsc4py/include/petsc4py copying src/include/petsc4py/__init__.pxd -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/petsc4py/include/petsc4py copying src/include/petsc4py/__init__.pyx -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/petsc4py/include/petsc4py copying src/PETSc.pxd -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/petsc4py copying src/lib/petsc.cfg -> build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/petsc4py/lib running build_ext PETSC_DIR: /usr/local PETSC_ARCH: version: 3.10.2 release integer-size: 32-bit scalar-type: real precision: double language: CONLY compiler: /usr/local/bin/mpicc linker: /usr/local/bin/mpicc building 'PETSc' extension creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7 creating build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/src /usr/local/bin/mpicc -pipe -O2 -fno-strict-aliasing -msse2 -fPIC -fPIC -pipe -O2 -fno-strict-aliasing -DPETSC_DIR=/usr/local -I/usr/local/include -Isrc/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c src/PETSc.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/src/PETSc.o /usr/local/bin/mpicc -pipe -O2 -fno-strict-aliasing -msse2 -fPIC -fPIC -pipe -O2 -fno-strict-aliasing -DPETSC_DIR=/usr/local -I/usr/local/include -Isrc/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c src/libpetsc4py.c -o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/src/libpetsc4py.o /usr/local/bin/mpicc /usr/local/lib/libmpi.so -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -pipe -O2 -fno-strict-aliasing -msse2 -fPIC -shared build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/src/PETSc.o build/temp.dragonfly-5.7-SYNTH-x86_64-2.7/src/libpetsc4py.o -L/usr/local/lib -L/usr/local/lib -R/usr/local/lib -lpetsc -lpython2.7 -o build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/petsc4py/lib/PETSc.so /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) writing build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/petsc4py/lib/petsc.cfg -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py27-petsc4py-3.10.0_2 depends on package: py27-numpy>=1.15,1<1.19,1 - found ===> py27-petsc4py-3.10.0_2 depends on package: py27-setuptools>0 - found ===> py27-petsc4py-3.10.0_2 depends on file: /usr/local/bin/python2.7 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py27-petsc4py-3.10.0_2 ===> Generating temporary packing list running install running build running build_src running build_py running build_ext PETSC_DIR: /usr/local PETSC_ARCH: version: 3.10.2 release integer-size: 32-bit scalar-type: real precision: double language: CONLY compiler: /usr/local/bin/mpicc linker: /usr/local/bin/mpicc writing build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/petsc4py/lib/petsc.cfg running install_lib creating /construction/math/py-petsc4py/stage/usr/local/lib/python2.7 creating /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages creating /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/petsc4py/__init__.py -> /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py creating /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py/lib copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/petsc4py/lib/__init__.py -> /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py/lib copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/petsc4py/lib/petsc.cfg -> /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py/lib copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/petsc4py/lib/PETSc.so -> /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py/lib copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/petsc4py/__main__.py -> /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/petsc4py/PETSc.py -> /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py creating /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py/include creating /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py/include/petsc4py copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/petsc4py/include/petsc4py/numpy.h -> /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py/include/petsc4py copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/petsc4py/include/petsc4py/petsc4py.h -> /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py/include/petsc4py copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/petsc4py/include/petsc4py/petsc4py.PETSc_api.h -> /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py/include/petsc4py copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/petsc4py/include/petsc4py/petsc4py.PETSc.h -> /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py/include/petsc4py copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/petsc4py/include/petsc4py/petsc4py.i -> /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py/include/petsc4py copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/petsc4py/include/petsc4py/PETSc.pxd -> /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py/include/petsc4py copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/petsc4py/include/petsc4py/__init__.pyx -> /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py/include/petsc4py copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/petsc4py/include/petsc4py/__init__.pxd -> /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py/include/petsc4py copying build/lib.dragonfly-5.7-SYNTH-x86_64-2.7/petsc4py/PETSc.pxd -> /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py byte-compiling /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py/__init__.py to __init__.pyc byte-compiling /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py/lib/__init__.py to __init__.pyc byte-compiling /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py/__main__.py to __main__.pyc byte-compiling /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py/PETSc.py to PETSc.pyc writing byte-compilation script '/tmp/tmpbHMyoM.py' /usr/local/bin/python2.7 -O /tmp/tmpbHMyoM.py removing /tmp/tmpbHMyoM.py running install_egg_info running egg_info writing requirements to petsc4py.egg-info/requires.txt writing petsc4py.egg-info/PKG-INFO writing top-level names to petsc4py.egg-info/top_level.txt writing dependency_links to petsc4py.egg-info/dependency_links.txt reading manifest file 'petsc4py.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'petsc4py.egg-info/SOURCES.txt' Copying petsc4py.egg-info to /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py-3.10.0-py2.7.egg-info running install_scripts writing list of installed files to '/construction/math/py-petsc4py/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/python2.7/site-packages/petsc4py/lib/PETSc.so is linked to /usr/local/lib/gcc8/libgfortran.so.5 from lang/gcc8 but it is not declared as a dependency Error: /usr/local/lib/python2.7/site-packages/petsc4py/lib/PETSc.so is linked to /usr/local/lib/gcc8/libgcc_s.so.1 from lang/gcc8 but it is not declared as a dependency Error: /usr/local/lib/python2.7/site-packages/petsc4py/lib/PETSc.so is linked to /usr/local/lib/gcc8/libquadmath.so.0 from lang/gcc8 but it is not declared as a dependency Error: /usr/local/lib/python2.7/site-packages/petsc4py/lib/PETSc.so is linked to /usr/local/lib/liblapack.so.4 from math/lapack but it is not declared as a dependency Warning: you need LIB_DEPENDS+=liblapack.so:math/lapack Error: /usr/local/lib/python2.7/site-packages/petsc4py/lib/PETSc.so is linked to /usr/local/lib/libblas.so.2 from math/blas but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libblas.so:math/blas Error: /usr/local/lib/python2.7/site-packages/petsc4py/lib/PETSc.so is linked to /usr/local/lib/libX11.so.6 from x11/libX11 but it is not declared as a dependency Warning: you need USE_XORG+=x11 Error: /usr/local/lib/python2.7/site-packages/petsc4py/lib/PETSc.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Error: /usr/local/lib/python2.7/site-packages/petsc4py/lib/PETSc.so is linked to /usr/local/lib/libxcb.so.1 from x11/libxcb but it is not declared as a dependency Warning: you need USE_XORG+=xcb Error: /usr/local/lib/python2.7/site-packages/petsc4py/lib/PETSc.so is linked to /usr/local/lib/libXau.so.6 from x11/libXau but it is not declared as a dependency Warning: you need USE_XORG+=xau Error: /usr/local/lib/python2.7/site-packages/petsc4py/lib/PETSc.so is linked to /usr/local/lib/libXdmcp.so.6 from x11/libXdmcp but it is not declared as a dependency Warning: you need USE_XORG+=xdmcp Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py27-petsc4py-3.10.0_2 file sizes/checksums [29]: . done packing files [29]: . done packing directories [0]: . done -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Saturday, 15 FEB 2020 at 15:31:58 UTC Duration: 00:13:16