=> Building math/py-pynleq2@py37 Started : Sunday, 29 DEC 2019 at 11:03:52 UTC Platform: 5.7-DEVELOPMENT DragonFly v5.7.0.1191.g9d275-DEVELOPMENT #19: Sun Dec 22 10:53:59 PST 2019 root@sting.dragonflybsd.org:/usr/obj/usr/src/sys/X86_64_GENERIC x86_64 -------------------------------------------------- -- Environment -------------------------------------------------- UNAME_r=5.7-SYNTH UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=DragonFly 5.7-SYNTH UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 TERM=dumb PKG_CACHEDIR=/var/cache/pkg8 PKG_DBDIR=/var/db/pkg8 PORTSDIR=/xports LANG=C HOME=/root USER=root -------------------------------------------------- -- Options -------------------------------------------------- -------------------------------------------------- -- CONFIGURE_ENV -------------------------------------------------- F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" PYTHON="/usr/local/bin/python3.7" XDG_DATA_HOME=/construction/math/py-pynleq2 XDG_CONFIG_HOME=/construction/math/py-pynleq2 HOME=/construction/math/py-pynleq2 TMPDIR="/tmp" PATH=/construction/math/py-pynleq2/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 -------------------------------------------------- -- CONFIGURE_ARGS -------------------------------------------------- -------------------------------------------------- -- MAKE_ENV -------------------------------------------------- F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" XDG_DATA_HOME=/construction/math/py-pynleq2 XDG_CONFIG_HOME=/construction/math/py-pynleq2 HOME=/construction/math/py-pynleq2 TMPDIR="/tmp" PATH=/construction/math/py-pynleq2/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" -------------------------------------------------- -- MAKE_ARGS -------------------------------------------------- DESTDIR=/construction/math/py-pynleq2/stage -------------------------------------------------- -- PLIST_SUB -------------------------------------------------- PYTHON_INCLUDEDIR=include/python3.7m PYTHON_LIBDIR=lib/python3.7 PYTHON_PLATFORM=dragonfly5 PYTHON_SITELIBDIR=lib/python3.7/site-packages PYTHON_SUFFIX=37 PYTHON_VER=3.7 PYTHON_VERSION=python3.7 PYTHON2="@comment " PYTHON3="" OSREL=5.7 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/pynleq2" EXAMPLESDIR="share/examples/pynleq2" DATADIR="share/pynleq2" WWWDIR="www/pynleq2" ETCDIR="etc/pynleq2" -------------------------------------------------- -- SUB_LIST -------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/pynleq2 DOCSDIR=/usr/local/share/doc/pynleq2 EXAMPLESDIR=/usr/local/share/examples/pynleq2 WWWDIR=/usr/local/www/pynleq2 ETCDIR=/usr/local/etc/pynleq2 -------------------------------------------------- -- /etc/make.conf -------------------------------------------------- SYNTHPROFILE=LiveSystem USE_PACKAGE_DEPENDS_ONLY=yes PACKAGE_BUILDING=yes BATCH=yes PKG_CREATE_VERBOSE=yes PORTSDIR=/xports DISTDIR=/distfiles WRKDIRPREFIX=/construction PORT_DBDIR=/options PACKAGES=/packages MAKE_JOBS_NUMBER_LIMIT=15 DEVELOPER=1 DPORTS_BUILDER= yes DISABLE_LICENSES= yes DEFAULT_VERSIONS= ssl=openssl FORCE_PACKAGE= yes DEVELOPER= yes HAVE_COMPAT_IA32_KERN= CONFIGURE_MAX_CMD_LEN=262144 _PERL5_FROM_BIN=5.30.0 _ALTCCVERSION_921dbbb2=none _OBJC_ALTCCVERSION_921dbbb2=none _SMP_CPUS=32 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500709 OSVERSION=9999999 OSREL=5.7 _OSRELEASE=5.7-SYNTH PYTHONBASE=/usr/local _PKG_CHECKED=1 -------------------------------------------------------------------------------- -- Phase: check-sanity -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: pkg-depends -------------------------------------------------------------------------------- ===> py37-pynleq2-0.0.2_5 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.12.0.txz Installing pkg-1.12.0... Extracting pkg-1.12.0: .......... done ===> py37-pynleq2-0.0.2_5 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py37-pynleq2-0.0.2_5 -------------------------------------------------------------------------------- -- Phase: fetch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: fetch -------------------------------------------------------------------------------- ===> py37-pynleq2-0.0.2_5 depends on file: /usr/local/sbin/pkg - found => pynleq2-0.0.2.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch https://files.pythonhosted.org/packages/source/p/pynleq2/pynleq2-0.0.2.tar.gz pynleq2-0.0.2.tar.gz 6219 B 41 MBps 00s => PySCeS-pysces-0.9.6_GH0.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch https://codeload.github.com/PySCeS/pysces/tar.gz/0.9.6?dummy=/PySCeS-pysces-0.9.6_GH0.tar.gz fetch: https://codeload.github.com/PySCeS/pysces/tar.gz/0.9.6?dummy=/PySCeS-pysces-0.9.6_GH0.tar.gz: size unknown fetch: https://codeload.github.com/PySCeS/pysces/tar.gz/0.9.6?dummy=/PySCeS-pysces-0.9.6_GH0.tar.gz: size of remote file is not known PySCeS-pysces-0.9.6_GH0.tar.gz 2611 kB 1969 kBps 01s ===> Fetching all distfiles required by py37-pynleq2-0.0.2_5 for building -------------------------------------------------------------------------------- -- Phase: checksum -------------------------------------------------------------------------------- ===> py37-pynleq2-0.0.2_5 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-pynleq2-0.0.2_5 for building => SHA256 Checksum OK for pynleq2-0.0.2.tar.gz. => SHA256 Checksum OK for PySCeS-pysces-0.9.6_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: extract-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: extract -------------------------------------------------------------------------------- ===> py37-pynleq2-0.0.2_5 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-pynleq2-0.0.2_5 for building ===> Extracting for py37-pynleq2-0.0.2_5 ===> py37-pynleq2-0.0.2_5 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-pynleq2-0.0.2_5 for building => SHA256 Checksum OK for pynleq2-0.0.2.tar.gz. => SHA256 Checksum OK for PySCeS-pysces-0.9.6_GH0.tar.gz. -------------------------------------------------------------------------------- -- Phase: patch-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: patch -------------------------------------------------------------------------------- ===> Patching for py37-pynleq2-0.0.2_5 ===> Applying ports patches for py37-pynleq2-0.0.2_5 /usr/bin/sed -i.bak -e "s@flang@gfortran@g" /construction/math/py-pynleq2/pynleq2-0.0.2/setup.py -------------------------------------------------------------------------------- -- Phase: build-depends -------------------------------------------------------------------------------- ===> py37-pynleq2-0.0.2_5 depends on package: py37-numpy>0 - not found ===> Installing existing package /packages/All/py37-numpy-1.16.5_2,1.txz Installing py37-numpy-1.16.5_2,1... `-- Installing gcc8-8.3.0_3... | `-- Installing binutils-2.33.1,1... | | `-- Installing gettext-runtime-0.20.1... | | `-- Installing indexinfo-0.3.1... | | `-- Extracting indexinfo-0.3.1: . done | | `-- Extracting gettext-runtime-0.20.1: .......... done | `-- Extracting binutils-2.33.1,1: .......... done | `-- Installing gmp-6.1.2_1... | `-- Extracting gmp-6.1.2_1: .......... done | `-- Installing mpc-1.1.0_2... | | `-- Installing mpfr-4.0.2... | | `-- Extracting mpfr-4.0.2: .......... done | `-- Extracting mpc-1.1.0_2: ...... done `-- Extracting gcc8-8.3.0_3: .......... done `-- Installing openblas-0.2.20_11,1... `-- Extracting openblas-0.2.20_11,1: .......... done `-- Installing py37-setuptools-41.4.0_1... | `-- Installing python37-3.7.5_1... | | `-- Installing expat-2.2.8... | | `-- Extracting expat-2.2.8: .......... done | | `-- Installing libffi-3.2.1_3... | | `-- Extracting libffi-3.2.1_3: .......... done | | `-- Installing ncurses-6.1.20190525... | | `-- Extracting ncurses-6.1.20190525: .......... done | | `-- Installing openssl-1.0.2u,1... | | `-- Extracting openssl-1.0.2u,1: .......... done | | `-- Installing readline-8.0.0_1... | | `-- Extracting readline-8.0.0_1: .......... done | `-- Extracting python37-3.7.5_1: .......... done `-- Extracting py37-setuptools-41.4.0_1: .......... done `-- Installing suitesparse-5.4.0_3... | `-- Installing metis-5.1.0_8... | `-- Extracting metis-5.1.0_8: .......... done | `-- Installing tbb-2019.8... | `-- Extracting tbb-2019.8: .......... done `-- Extracting suitesparse-5.4.0_3: .......... done Extracting py37-numpy-1.16.5_2,1: .......... done ===== Message from gcc8-8.3.0_3: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from openssl-1.0.2u,1: -- Edit /usr/local/openssl/openssl.cnf to fit your needs. ===== Message from python37-3.7.5_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 ===> py37-pynleq2-0.0.2_5 depends on package: py37-numpy>0 - found ===> Returning to build of py37-pynleq2-0.0.2_5 ===> py37-pynleq2-0.0.2_5 depends on executable: gfortran8 - found ===> py37-pynleq2-0.0.2_5 depends on package: py37-setuptools>0 - found ===> py37-pynleq2-0.0.2_5 depends on file: /usr/local/bin/python3.7 - found ===> py37-pynleq2-0.0.2_5 depends on file: /usr/local/bin/as - found -------------------------------------------------------------------------------- -- Phase: lib-depends -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: configure -------------------------------------------------------------------------------- ===> py37-pynleq2-0.0.2_5 depends on package: py37-numpy>0 - found ===> py37-pynleq2-0.0.2_5 depends on executable: gfortran8 - found ===> py37-pynleq2-0.0.2_5 depends on package: py37-setuptools>0 - found ===> py37-pynleq2-0.0.2_5 depends on file: /usr/local/bin/python3.7 - found ===> py37-pynleq2-0.0.2_5 depends on file: /usr/local/bin/as - found ===> Configuring for py37-pynleq2-0.0.2_5 running config -------------------------------------------------------------------------------- -- Phase: build -------------------------------------------------------------------------------- ===> Building for py37-pynleq2-0.0.2_5 /construction/math/py-pynleq2/pysces-0.9.6/pysces/nleq2/zibmon.f:384:55-69: $ 'The following indices are active', (INDACT(I),I=0,IONCNT) 1 2 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) /construction/math/py-pynleq2/pysces-0.9.6/pysces/nleq2/zibmon.f:394:55-69: $ 'The following indices are active', (INDACT(I),I=0,IONCNT) 1 2 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "pynleq2.nleq2" sources creating build creating build/src.dragonfly-5.7-SYNTH-x86_64-3.7 creating build/src.dragonfly-5.7-SYNTH-x86_64-3.7/nleq2 f2py options: [] f2py: nleq2/nleq2.pyf Reading fortran codes... Reading file 'nleq2/nleq2.pyf' (format:free) Line #58 in nleq2/nleq2.pyf:"end python module nleq2.f " crackline:1: No pattern for line crackline: groupcounter=1 groupname={0: '', 1: 'python module', 2: 'interface', 3: 'subroutine'} crackline: Mismatch of blocks encountered. Trying to fix it by assuming "end" statement. Post-processing... Block: nleq2__user__routines Block: nleq2_user_interface Block: fcn Block: jac Block: nleq2 Block: nleq2 Block: nleq2 In: nleq2/nleq2.pyf:nleq2:nleq2:nleq2 get_useparameters: no module nleq2__user__routines info used by nleq2 Post-processing (stage 2)... Building modules... Constructing call-back function "cb_fcn_in_nleq2__user__routines" def fcn(x,ifail,[n]): return f,ifail Constructing call-back function "cb_jac_in_nleq2__user__routines" def jac(x,[n,m1]): return a Building module "nleq2"... Constructing wrapper function "nleq2"... x,xscal,rtol,iopt,ierr = nleq2(fcn,jac,x,xscal,rtol,iopt,iwk,rwk,[n,liwk,lrwk,fcn_extra_args,jac_extra_args]) Wrote C/API module "nleq2" to file "build/src.dragonfly-5.7-SYNTH-x86_64-3.7/nleq2/nleq2module.c" adding 'build/src.dragonfly-5.7-SYNTH-x86_64-3.7/build/src.dragonfly-5.7-SYNTH-x86_64-3.7/nleq2/fortranobject.c' to sources. adding 'build/src.dragonfly-5.7-SYNTH-x86_64-3.7/build/src.dragonfly-5.7-SYNTH-x86_64-3.7/nleq2' to include_dirs. creating build/src.dragonfly-5.7-SYNTH-x86_64-3.7/build creating build/src.dragonfly-5.7-SYNTH-x86_64-3.7/build/src.dragonfly-5.7-SYNTH-x86_64-3.7 creating build/src.dragonfly-5.7-SYNTH-x86_64-3.7/build/src.dragonfly-5.7-SYNTH-x86_64-3.7/nleq2 copying /usr/local/lib/python3.7/site-packages/numpy/f2py/src/fortranobject.c -> build/src.dragonfly-5.7-SYNTH-x86_64-3.7/build/src.dragonfly-5.7-SYNTH-x86_64-3.7/nleq2 copying /usr/local/lib/python3.7/site-packages/numpy/f2py/src/fortranobject.h -> build/src.dragonfly-5.7-SYNTH-x86_64-3.7/build/src.dragonfly-5.7-SYNTH-x86_64-3.7/nleq2 build_src: building npy-pkg config files running build_py creating build/lib.dragonfly-5.7-SYNTH-x86_64-3.7 creating build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/pynleq2 copying pynleq2/_release.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/pynleq2 copying pynleq2/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/pynleq2 creating build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/pynleq2/tests copying pynleq2/tests/test_solve.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/pynleq2/tests copying pynleq2/tests/__init__.py -> build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/pynleq2/tests running build_ext customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpckl_rk96/tmp creating /tmp/tmpckl_rk96/tmp/tmpckl_rk96 compile options: '-MMD -MF /tmp/tmpckl_rk96/file.c.d -c' cc: /tmp/tmpckl_rk96/file.c customize UnixCCompiler using build_ext building 'pynleq2.nleq2' extension compiling C sources C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/build creating build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/build/src.dragonfly-5.7-SYNTH-x86_64-3.7 creating build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/build/src.dragonfly-5.7-SYNTH-x86_64-3.7/nleq2 creating build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/build/src.dragonfly-5.7-SYNTH-x86_64-3.7/build creating build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/build/src.dragonfly-5.7-SYNTH-x86_64-3.7/build/src.dragonfly-5.7-SYNTH-x86_64-3.7 creating build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/build/src.dragonfly-5.7-SYNTH-x86_64-3.7/build/src.dragonfly-5.7-SYNTH-x86_64-3.7/nleq2 compile options: '-Ibuild/src.dragonfly-5.7-SYNTH-x86_64-3.7/build/src.dragonfly-5.7-SYNTH-x86_64-3.7/nleq2 -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c' cc: build/src.dragonfly-5.7-SYNTH-x86_64-3.7/build/src.dragonfly-5.7-SYNTH-x86_64-3.7/nleq2/fortranobject.c cc: build/src.dragonfly-5.7-SYNTH-x86_64-3.7/nleq2/nleq2module.c In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.dragonfly-5.7-SYNTH-x86_64-3.7/build/src.dragonfly-5.7-SYNTH-x86_64-3.7/nleq2/fortranobject.h:13, from build/src.dragonfly-5.7-SYNTH-x86_64-3.7/build/src.dragonfly-5.7-SYNTH-x86_64-3.7/nleq2/fortranobject.c:2: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.dragonfly-5.7-SYNTH-x86_64-3.7/build/src.dragonfly-5.7-SYNTH-x86_64-3.7/nleq2/fortranobject.h:13, from build/src.dragonfly-5.7-SYNTH-x86_64-3.7/nleq2/nleq2module.c:16: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/build/src.dragonfly-5.7-SYNTH-x86_64-3.7/nleq2/nleq2module.o build/temp.dragonfly-5.7-SYNTH-x86_64-3.7/build/src.dragonfly-5.7-SYNTH-x86_64-3.7/build/src.dragonfly-5.7-SYNTH-x86_64-3.7/nleq2/fortranobject.o -L../.fbuild -L/usr/local/gfortran/lib -L/usr/local/lib -lff -lgfortran -lexecinfo -lpython3.7m -o build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/pynleq2/nleq2.so /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) => Checking for system changes between port configure and build Everything is fine. -------------------------------------------------------------------------------- -- Phase: run-depends -------------------------------------------------------------------------------- ===> py37-pynleq2-0.0.2_5 depends on executable: gfortran8 - found ===> py37-pynleq2-0.0.2_5 depends on package: py37-setuptools>0 - found ===> py37-pynleq2-0.0.2_5 depends on file: /usr/local/bin/python3.7 - found -------------------------------------------------------------------------------- -- Phase: stage -------------------------------------------------------------------------------- ===> Staging for py37-pynleq2-0.0.2_5 ===> py37-pynleq2-0.0.2_5 depends on executable: gfortran8 - found ===> py37-pynleq2-0.0.2_5 depends on package: py37-setuptools>0 - found ===> py37-pynleq2-0.0.2_5 depends on file: /usr/local/bin/python3.7 - found ===> Generating temporary packing list running install running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "pynleq2.nleq2" sources f2py options: [] adding 'build/src.dragonfly-5.7-SYNTH-x86_64-3.7/build/src.dragonfly-5.7-SYNTH-x86_64-3.7/nleq2/fortranobject.c' to sources. adding 'build/src.dragonfly-5.7-SYNTH-x86_64-3.7/build/src.dragonfly-5.7-SYNTH-x86_64-3.7/nleq2' to include_dirs. build_src: building npy-pkg config files running build_py running build_ext customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmp0bgwzrzm/tmp creating /tmp/tmp0bgwzrzm/tmp/tmp0bgwzrzm compile options: '-MMD -MF /tmp/tmp0bgwzrzm/file.c.d -c' cc: /tmp/tmp0bgwzrzm/file.c customize UnixCCompiler using build_ext running install_lib creating /construction/math/py-pynleq2/stage/usr/local/lib/python3.7 creating /construction/math/py-pynleq2/stage/usr/local/lib/python3.7/site-packages creating /construction/math/py-pynleq2/stage/usr/local/lib/python3.7/site-packages/pynleq2 copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/pynleq2/_release.py -> /construction/math/py-pynleq2/stage/usr/local/lib/python3.7/site-packages/pynleq2 copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/pynleq2/__init__.py -> /construction/math/py-pynleq2/stage/usr/local/lib/python3.7/site-packages/pynleq2 creating /construction/math/py-pynleq2/stage/usr/local/lib/python3.7/site-packages/pynleq2/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/pynleq2/tests/test_solve.py -> /construction/math/py-pynleq2/stage/usr/local/lib/python3.7/site-packages/pynleq2/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/pynleq2/tests/__init__.py -> /construction/math/py-pynleq2/stage/usr/local/lib/python3.7/site-packages/pynleq2/tests copying build/lib.dragonfly-5.7-SYNTH-x86_64-3.7/pynleq2/nleq2.so -> /construction/math/py-pynleq2/stage/usr/local/lib/python3.7/site-packages/pynleq2 byte-compiling /construction/math/py-pynleq2/stage/usr/local/lib/python3.7/site-packages/pynleq2/_release.py to _release.cpython-37.pyc byte-compiling /construction/math/py-pynleq2/stage/usr/local/lib/python3.7/site-packages/pynleq2/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/math/py-pynleq2/stage/usr/local/lib/python3.7/site-packages/pynleq2/tests/test_solve.py to test_solve.cpython-37.pyc byte-compiling /construction/math/py-pynleq2/stage/usr/local/lib/python3.7/site-packages/pynleq2/tests/__init__.py to __init__.cpython-37.pyc writing byte-compilation script '/tmp/tmpplb5_s4s.py' /usr/local/bin/python3.7 /tmp/tmpplb5_s4s.py removing /tmp/tmpplb5_s4s.py running install_egg_info running egg_info creating pynleq2.egg-info writing pynleq2.egg-info/PKG-INFO writing dependency_links to pynleq2.egg-info/dependency_links.txt writing top-level names to pynleq2.egg-info/top_level.txt writing manifest file 'pynleq2.egg-info/SOURCES.txt' reading manifest file 'pynleq2.egg-info/SOURCES.txt' writing manifest file 'pynleq2.egg-info/SOURCES.txt' Copying pynleq2.egg-info to /construction/math/py-pynleq2/stage/usr/local/lib/python3.7/site-packages/pynleq2-0.0.2-py3.7.egg-info running install_scripts running install_clib customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmppz45qlzo/tmp creating /tmp/tmppz45qlzo/tmp/tmppz45qlzo compile options: '-MMD -MF /tmp/tmppz45qlzo/file.c.d -c' cc: /tmp/tmppz45qlzo/file.c writing list of installed files to '/construction/math/py-pynleq2/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/python3.7/site-packages/pynleq2/nleq2.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks -------------------------------------------------------------------------------- -- Phase: check-plist -------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) -------------------------------------------------------------------------------- -- Phase: package -------------------------------------------------------------------------------- ===> Building package for py37-pynleq2-0.0.2_5 file sizes/checksums [17]: . done packing files [17]: . done packing directories [0]: . done -------------------------------------------------------------------------------- -- Phase: install-mtree -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -- Phase: install -------------------------------------------------------------------------------- ===> Installing for py37-pynleq2-0.0.2_5 ===> Checking if py37-pynleq2 is already installed ===> Registering installation for py37-pynleq2-0.0.2_5 Installing py37-pynleq2-0.0.2_5... -------------------------------------------------------------------------------- -- Phase: deinstall -------------------------------------------------------------------------------- => Checking shared library dependencies NEEDED libgfortran.so.5 NEEDED libexecinfo.so.1 NEEDED libpython3.7m.so.1.0 NEEDED libc.so.8 ===> Deinstalling for py37-pynleq2 ===> Deinstalling py37-pynleq2-0.0.2_5 Updating database digests format: .......... done Checking integrity... done (0 conflicting) Deinstallation has been requested for the following 1 packages (of 0 packages in the universe): Installed packages to be REMOVED: py37-pynleq2-0.0.2_5 Number of packages to be removed: 1 [1/1] Deinstalling py37-pynleq2-0.0.2_5... [1/1] Deleting files for py37-pynleq2-0.0.2_5: .......... done => Checking for system changes between staging and package deinstallation Everything is fine. -------------------------------------------------- -- Termination -------------------------------------------------- Finished: Sunday, 29 DEC 2019 at 11:06:45 UTC Duration: 00:02:52