------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 FLAVOR=py39 UNAME_r=6.5 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- ===> The following configuration options are available for py39-netCDF4-1.6.4: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples ===> Use 'make config' to modify these settings SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/construction/science/py-netCDF4 XDG_CONFIG_HOME=/construction/science/py-netCDF4 XDG_CACHE_HOME=/construction/science/py-netCDF4/.cache HOME=/construction/science/py-netCDF4 TMPDIR="/tmp" PATH=/construction/science/py-netCDF4/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/science/py-netCDF4/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:05 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/science/py-netCDF4 XDG_CONFIG_HOME=/construction/science/py-netCDF4 XDG_CACHE_HOME=/construction/science/py-netCDF4/.cache HOME=/construction/science/py-netCDF4 TMPDIR="/tmp" PATH=/construction/science/py-netCDF4/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/science/py-netCDF4/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/science/py-netCDF4/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- PORTDOCS="" PORTEXAMPLES="" PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=6.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/py39-netCDF4" EXAMPLESDIR="share/examples/py39-netCDF4" DATADIR="share/py39-netCDF4" WWWDIR="www/py39-netCDF4" ETCDIR="etc/py39-netCDF4" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py39-netCDF4 DOCSDIR=/usr/local/share/doc/py39-netCDF4 EXAMPLESDIR=/usr/local/share/examples/py39-netCDF4 WWWDIR=/usr/local/www/py39-netCDF4 ETCDIR=/usr/local/etc/py39-netCDF4 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes DFLY_STING_XFAIL=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_COMPRESSION_FORMAT=.tgz DEVELOPER=1 WITH_CCACHE_BUILD=yes CCACHE_DIR=/ccache UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600503 OSVERSION=9999999 OSREL=6.5 _OSRELEASE=6.5-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=13 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/metis-5.1.0_9.pkg ===== Message from metis-5.1.0_9: -- ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing Installing /packages/All/indexinfo-0.3.1.pkg Installing /packages/All/gmp-6.2.1.pkg Installing /packages/All/mpfr-4.2.0_1,1.pkg Installing /packages/All/mpc-1.3.1_1.pkg UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/liblz4-1.9.4,1.pkg Installing /packages/All/zstd-1.5.5.pkg Installing /packages/All/gettext-runtime-0.21.1.pkg Installing /packages/All/binutils-2.40_4,1.pkg Installing /packages/All/gcc12-12.2.0_6.pkg ===== Message from gcc12-12.2.0_6: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc12 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.20_1,1.pkg Installing /packages/All/suitesparse-config-7.0.1_1.pkg Installing /packages/All/suitesparse-amd-3.0.3_1.pkg Installing /packages/All/suitesparse-camd-3.0.3_1.pkg Installing /packages/All/suitesparse-colamd-3.0.3_1.pkg Installing /packages/All/suitesparse-ccolamd-3.0.3_1.pkg Installing /packages/All/suitesparse-cholmod-4.0.3_1.pkg Installing /packages/All/suitesparse-umfpack-6.1.0_1.pkg Installing /packages/All/libffi-3.4.4.pkg Installing /packages/All/expat-2.5.0.pkg Installing /packages/All/mpdecimal-2.5.1.pkg Installing /packages/All/ncurses-6.4.pkg ===== Message from ncurses-6.4: -- To get the terminfo database please install the terminfo-db package: pkg install terminfo-db Installing /packages/All/readline-8.2.1.pkg Installing /packages/All/openssl-1.1.1u,1.pkg Installing /packages/All/python39-3.9.17.pkg ===== Message from python39-3.9.17: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 Installing /packages/All/py39-setuptools-63.1.0_1.pkg Installing /packages/All/py39-numpy-1.24.1_4,1.pkg Installing /packages/All/py39-cython-0.29.35.pkg Installing /packages/All/ccache-3.7.12_4.pkg Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc create symlink for gcc (world) create symlink for g++ create symlink for g++ (world) create symlink for gcc12 create symlink for gcc12 (world) create symlink for g++12 create symlink for g++12 (world) create symlink for cpp12 create symlink for cpp12 (world) ===== Message from ccache-3.7.12_4: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. Installing /packages/All/libaec-1.0.6.pkg Installing /packages/All/hdf5-1.12.2_2,1.pkg Installing /packages/All/libnghttp2-1.53.0.pkg Installing /packages/All/libssh2-1.11.0,3.pkg Installing /packages/All/libunistring-1.1.pkg Installing /packages/All/libidn2-2.3.4.pkg Installing /packages/All/libpsl-0.21.2_3.pkg Installing /packages/All/ca_root_nss-3.89.1.pkg ===== Message from ca_root_nss-3.89.1: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem Installing /packages/All/curl-8.1.2.pkg Installing /packages/All/pkgconf-1.8.1,1.pkg Installing /packages/All/netcdf-4.9.2.pkg Installing /packages/All/py39-cftime-1.6.2_1.pkg UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:26 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py39-netCDF4-1.6.4 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py39-netCDF4-1.6.4 depends on file: /usr/local/sbin/pkg - found => Unidata-netcdf4-python-v1.6.4rel_GH0.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch https://codeload.github.com/Unidata/netcdf4-python/tar.gz/v1.6.4rel?dummy=/Unidata-netcdf4-python-v1.6.4rel_GH0.tar.gz fetch: https://codeload.github.com/Unidata/netcdf4-python/tar.gz/v1.6.4rel?dummy=/Unidata-netcdf4-python-v1.6.4rel_GH0.tar.gz: size unknown fetch: https://codeload.github.com/Unidata/netcdf4-python/tar.gz/v1.6.4rel?dummy=/Unidata-netcdf4-python-v1.6.4rel_GH0.tar.gz: size of remote file is not known Unidata-netcdf4-python-v1.6.4rel_GH0.tar.gz 0 B 0 Bps Unidata-netcdf4-python-v1.6.4rel_GH0.tar.gz 48 kB 402 kBps Unidata-netcdf4-python-v1.6.4rel_GH0.tar.gz 807 kB 1175 kBps 01s ===> Fetching all distfiles required by py39-netCDF4-1.6.4 for building SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py39-netCDF4-1.6.4 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-netCDF4-1.6.4 for building => SHA256 Checksum OK for Unidata-netcdf4-python-v1.6.4rel_GH0.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py39-netCDF4-1.6.4 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-netCDF4-1.6.4 for building ===> Extracting for py39-netCDF4-1.6.4 => SHA256 Checksum OK for Unidata-netcdf4-python-v1.6.4rel_GH0.tar.gz. Extracted Memory Use: 2.43M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py39-netCDF4-1.6.4 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py39-netCDF4-1.6.4 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> py39-netCDF4-1.6.4 depends on executable: cython-3.9 - found ===> py39-netCDF4-1.6.4 depends on package: py39-setuptools>=63.1.0 - found ===> py39-netCDF4-1.6.4 depends on file: /usr/local/bin/python3.9 - found ===> py39-netCDF4-1.6.4 depends on file: /usr/local/bin/ccache - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> py39-netCDF4-1.6.4 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so) ===> py39-netCDF4-1.6.4 depends on shared library: libnetcdf.so - found (/usr/local/lib/libnetcdf.so) SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py39-netCDF4-1.6.4 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> py39-netCDF4-1.6.4 depends on executable: cython-3.9 - found ===> py39-netCDF4-1.6.4 depends on package: py39-setuptools>=63.1.0 - found ===> py39-netCDF4-1.6.4 depends on file: /usr/local/bin/python3.9 - found ===> py39-netCDF4-1.6.4 depends on file: /usr/local/bin/ccache - found ===> py39-netCDF4-1.6.4 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so) ===> py39-netCDF4-1.6.4 depends on shared library: libnetcdf.so - found (/usr/local/lib/libnetcdf.so) ===> Configuring for py39-netCDF4-1.6.4 reading from setup.cfg... using /usr/local/bin/nc-config... checking /usr/local/include ... HDF5 library version: 1.12.2 headers found in /usr/local/include using netcdf library version b'4.9.2' using Cython to compile netCDF4.pyx... netcdf lib has group rename capability netcdf lib has nc_inq_path function netcdf lib has nc_inq_format_extended function netcdf lib has nc_open_mem function netcdf lib has nc_create_mem function netcdf lib has cdf-5 format capability netcdf lib does not have netcdf4 parallel functions netcdf lib does not have pnetcdf parallel functions netcdf lib has bit-grooming/quantization functions netcdf lib has zstandard compression functions netcdf lib has bzip2 compression functions netcdf lib has blosc compression functions netcdf lib has szip compression functions netcdf lib has nc_set_alignment function netcdf lib has nc_inq_filter_avail function netcdf lib has nc_rc_set function NETCDF_PLUGIN_DIR not set, no netcdf compression plugins installed /usr/local/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:104: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. warnings.warn(msg, _BetaConfiguration) running config SUCCEEDED 00:00:09 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py39-netCDF4-1.6.4 reading from setup.cfg... using /usr/local/bin/nc-config... checking /usr/local/include ... HDF5 library version: 1.12.2 headers found in /usr/local/include using netcdf library version b'4.9.2' using Cython to compile netCDF4.pyx... netcdf lib has group rename capability netcdf lib has nc_inq_path function netcdf lib has nc_inq_format_extended function netcdf lib has nc_open_mem function netcdf lib has nc_create_mem function netcdf lib has cdf-5 format capability netcdf lib does not have netcdf4 parallel functions netcdf lib does not have pnetcdf parallel functions netcdf lib has bit-grooming/quantization functions netcdf lib has zstandard compression functions netcdf lib has bzip2 compression functions netcdf lib has blosc compression functions netcdf lib has szip compression functions netcdf lib has nc_set_alignment function netcdf lib has nc_inq_filter_avail function netcdf lib has nc_rc_set function NETCDF_PLUGIN_DIR not set, no netcdf compression plugins installed /usr/local/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:104: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. warnings.warn(msg, _BetaConfiguration) running build running build_py creating build creating build/lib.dragonfly-6.5-x86_64-cpython-39 creating build/lib.dragonfly-6.5-x86_64-cpython-39/netCDF4 copying src/netCDF4/__init__.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/netCDF4 copying src/netCDF4/utils.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/netCDF4 running egg_info creating src/netCDF4.egg-info writing src/netCDF4.egg-info/PKG-INFO writing dependency_links to src/netCDF4.egg-info/dependency_links.txt writing entry points to src/netCDF4.egg-info/entry_points.txt writing requirements to src/netCDF4.egg-info/requires.txt writing top-level names to src/netCDF4.egg-info/top_level.txt writing manifest file 'src/netCDF4.egg-info/SOURCES.txt' reading manifest file 'src/netCDF4.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'examples/data' warning: no previously-included files found matching 'src/netCDF4/_netCDF4.c' adding license file 'LICENSE' writing manifest file 'src/netCDF4.egg-info/SOURCES.txt' copying src/netCDF4/_netCDF4.pyx -> build/lib.dragonfly-6.5-x86_64-cpython-39/netCDF4 creating build/lib.dragonfly-6.5-x86_64-cpython-39/netCDF4/plugins copying src/netCDF4/plugins/empty.txt -> build/lib.dragonfly-6.5-x86_64-cpython-39/netCDF4/plugins running build_ext cythoning src/netCDF4/_netCDF4.pyx to src/netCDF4/_netCDF4.c building 'netCDF4._netCDF4' extension creating build/temp.dragonfly-6.5-x86_64-cpython-39 creating build/temp.dragonfly-6.5-x86_64-cpython-39/src creating build/temp.dragonfly-6.5-x86_64-cpython-39/src/netCDF4 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/usr/local/include -I/usr/local/lib/python3.9/site-packages/numpy/core/include -Iinclude -I/usr/local/include/python3.9 -c src/netCDF4/_netCDF4.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/src/netCDF4/_netCDF4.o src/netCDF4/_netCDF4.c: In function '__pyx_pf_7netCDF4_8_netCDF4_7_MemBuf_4__dealloc__': src/netCDF4/_netCDF4.c:5413:20: warning: passing argument 1 of 'free' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] free(__pyx_v_self->memory); ~~~~~~~~~~~~^~~~~~~~ In file included from /usr/local/include/python3.9/Python.h:34, from src/netCDF4/_netCDF4.c:6: /usr/include/stdlib.h:102:12: note: expected 'void *' but argument is of type 'const void *' void free(void *); ^~~~~~ src/netCDF4/_netCDF4.c: In function '__pyx_f_7netCDF4_8_netCDF4__set_att': src/netCDF4/_netCDF4.c:10136:106: warning: passing argument 5 of 'nc_put_att_string' from incompatible pointer type [-Wincompatible-pointer-types] __pyx_v_ierr = nc_put_att_string(__pyx_v_grpid, __pyx_v_varid, __pyx_v_attname, __pyx_v_N, __pyx_v_string_ptrs); ^~~~~~~~~~~~~~~~~~~ In file included from src/netCDF4/_netCDF4.c:761: /usr/local/include/netcdf.h:1113:44: note: expected 'const char **' but argument is of type 'char **' size_t len, const char **op); ~~~~~~~~~~~~~^~ src/netCDF4/_netCDF4.c:10633:103: warning: passing argument 5 of 'nc_put_att_string' from incompatible pointer type [-Wincompatible-pointer-types] __pyx_v_ierr = nc_put_att_string(__pyx_v_grpid, __pyx_v_varid, __pyx_v_attname, 1, (&__pyx_v_datstring)); ~^~~~~~~~~~~~~~~~~~~ In file included from src/netCDF4/_netCDF4.c:761: /usr/local/include/netcdf.h:1113:44: note: expected 'const char **' but argument is of type 'char **' size_t len, const char **op); ~~~~~~~~~~~~~^~ src/netCDF4/_netCDF4.c: In function '__pyx_f_7netCDF4_8_netCDF4__read_compound': src/netCDF4/_netCDF4.c:69066:35: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (__pyx_v_nf = 0; __pyx_v_nf < __pyx_t_4; __pyx_v_nf++) { ^ src/netCDF4/_netCDF4.c: In function '__pyx_f_7netCDF4_8_netCDF4__read_enum': src/netCDF4/_netCDF4.c:73002:39: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (__pyx_v_nmem = 0; __pyx_v_nmem < __pyx_t_11; __pyx_v_nmem++) { ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-6.5-x86_64-cpython-39/src/netCDF4/_netCDF4.o -L/usr/local/lib -L/usr/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lnetcdf -o build/lib.dragonfly-6.5-x86_64-cpython-39/netCDF4/_netCDF4.cpython-39.so SUCCEEDED 00:01:51 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py39-netCDF4-1.6.4 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> py39-netCDF4-1.6.4 depends on package: py39-cftime>=0 - found ===> py39-netCDF4-1.6.4 depends on executable: cython-3.9 - found ===> py39-netCDF4-1.6.4 depends on package: py39-setuptools>=63.1.0 - found ===> py39-netCDF4-1.6.4 depends on file: /usr/local/bin/python3.9 - found SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py39-netCDF4-1.6.4 ===> py39-netCDF4-1.6.4 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> py39-netCDF4-1.6.4 depends on package: py39-cftime>=0 - found ===> py39-netCDF4-1.6.4 depends on executable: cython-3.9 - found ===> py39-netCDF4-1.6.4 depends on package: py39-setuptools>=63.1.0 - found ===> py39-netCDF4-1.6.4 depends on file: /usr/local/bin/python3.9 - found ===> Generating temporary packing list reading from setup.cfg... using /usr/local/bin/nc-config... checking /usr/local/include ... HDF5 library version: 1.12.2 headers found in /usr/local/include using netcdf library version b'4.9.2' using Cython to compile netCDF4.pyx... netcdf lib has group rename capability netcdf lib has nc_inq_path function netcdf lib has nc_inq_format_extended function netcdf lib has nc_open_mem function netcdf lib has nc_create_mem function netcdf lib has cdf-5 format capability netcdf lib does not have netcdf4 parallel functions netcdf lib does not have pnetcdf parallel functions netcdf lib has bit-grooming/quantization functions netcdf lib has zstandard compression functions netcdf lib has bzip2 compression functions netcdf lib has blosc compression functions netcdf lib has szip compression functions netcdf lib has nc_set_alignment function netcdf lib has nc_inq_filter_avail function netcdf lib has nc_rc_set function NETCDF_PLUGIN_DIR not set, no netcdf compression plugins installed /usr/local/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:104: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. warnings.warn(msg, _BetaConfiguration) running install /usr/local/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing src/netCDF4.egg-info/PKG-INFO writing dependency_links to src/netCDF4.egg-info/dependency_links.txt writing entry points to src/netCDF4.egg-info/entry_points.txt writing requirements to src/netCDF4.egg-info/requires.txt writing top-level names to src/netCDF4.egg-info/top_level.txt reading manifest file 'src/netCDF4.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'examples/data' warning: no previously-included files found matching 'src/netCDF4/_netCDF4.c' adding license file 'LICENSE' writing manifest file 'src/netCDF4.egg-info/SOURCES.txt' running build_ext cythoning src/netCDF4/_netCDF4.pyx to src/netCDF4/_netCDF4.c building 'netCDF4._netCDF4' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/usr/local/include -I/usr/local/lib/python3.9/site-packages/numpy/core/include -Iinclude -I/usr/local/include/python3.9 -c src/netCDF4/_netCDF4.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/src/netCDF4/_netCDF4.o src/netCDF4/_netCDF4.c: In function '__pyx_pf_7netCDF4_8_netCDF4_7_MemBuf_4__dealloc__': src/netCDF4/_netCDF4.c:5413:20: warning: passing argument 1 of 'free' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] free(__pyx_v_self->memory); ~~~~~~~~~~~~^~~~~~~~ In file included from /usr/local/include/python3.9/Python.h:34, from src/netCDF4/_netCDF4.c:6: /usr/include/stdlib.h:102:12: note: expected 'void *' but argument is of type 'const void *' void free(void *); ^~~~~~ src/netCDF4/_netCDF4.c: In function '__pyx_f_7netCDF4_8_netCDF4__set_att': src/netCDF4/_netCDF4.c:10136:106: warning: passing argument 5 of 'nc_put_att_string' from incompatible pointer type [-Wincompatible-pointer-types] __pyx_v_ierr = nc_put_att_string(__pyx_v_grpid, __pyx_v_varid, __pyx_v_attname, __pyx_v_N, __pyx_v_string_ptrs); ^~~~~~~~~~~~~~~~~~~ In file included from src/netCDF4/_netCDF4.c:761: /usr/local/include/netcdf.h:1113:44: note: expected 'const char **' but argument is of type 'char **' size_t len, const char **op); ~~~~~~~~~~~~~^~ src/netCDF4/_netCDF4.c:10633:103: warning: passing argument 5 of 'nc_put_att_string' from incompatible pointer type [-Wincompatible-pointer-types] __pyx_v_ierr = nc_put_att_string(__pyx_v_grpid, __pyx_v_varid, __pyx_v_attname, 1, (&__pyx_v_datstring)); ~^~~~~~~~~~~~~~~~~~~ In file included from src/netCDF4/_netCDF4.c:761: /usr/local/include/netcdf.h:1113:44: note: expected 'const char **' but argument is of type 'char **' size_t len, const char **op); ~~~~~~~~~~~~~^~ src/netCDF4/_netCDF4.c: In function '__pyx_f_7netCDF4_8_netCDF4__read_compound': src/netCDF4/_netCDF4.c:69066:35: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (__pyx_v_nf = 0; __pyx_v_nf < __pyx_t_4; __pyx_v_nf++) { ^ src/netCDF4/_netCDF4.c: In function '__pyx_f_7netCDF4_8_netCDF4__read_enum': src/netCDF4/_netCDF4.c:73002:39: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (__pyx_v_nmem = 0; __pyx_v_nmem < __pyx_t_11; __pyx_v_nmem++) { ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-6.5-x86_64-cpython-39/src/netCDF4/_netCDF4.o -L/usr/local/lib -L/usr/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lnetcdf -o build/lib.dragonfly-6.5-x86_64-cpython-39/netCDF4/_netCDF4.cpython-39.so running install_lib creating /construction/science/py-netCDF4/stage/usr/local/lib/python3.9 creating /construction/science/py-netCDF4/stage/usr/local/lib/python3.9/site-packages creating /construction/science/py-netCDF4/stage/usr/local/lib/python3.9/site-packages/netCDF4 copying build/lib.dragonfly-6.5-x86_64-cpython-39/netCDF4/__init__.py -> /construction/science/py-netCDF4/stage/usr/local/lib/python3.9/site-packages/netCDF4 copying build/lib.dragonfly-6.5-x86_64-cpython-39/netCDF4/utils.py -> /construction/science/py-netCDF4/stage/usr/local/lib/python3.9/site-packages/netCDF4 copying build/lib.dragonfly-6.5-x86_64-cpython-39/netCDF4/_netCDF4.pyx -> /construction/science/py-netCDF4/stage/usr/local/lib/python3.9/site-packages/netCDF4 creating /construction/science/py-netCDF4/stage/usr/local/lib/python3.9/site-packages/netCDF4/plugins copying build/lib.dragonfly-6.5-x86_64-cpython-39/netCDF4/plugins/empty.txt -> /construction/science/py-netCDF4/stage/usr/local/lib/python3.9/site-packages/netCDF4/plugins copying build/lib.dragonfly-6.5-x86_64-cpython-39/netCDF4/_netCDF4.cpython-39.so -> /construction/science/py-netCDF4/stage/usr/local/lib/python3.9/site-packages/netCDF4 byte-compiling /construction/science/py-netCDF4/stage/usr/local/lib/python3.9/site-packages/netCDF4/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/science/py-netCDF4/stage/usr/local/lib/python3.9/site-packages/netCDF4/utils.py to utils.cpython-39.pyc writing byte-compilation script '/tmp/tmpayn34jon.py' /usr/local/bin/python3.9 /tmp/tmpayn34jon.py removing /tmp/tmpayn34jon.py running install_egg_info Copying src/netCDF4.egg-info to /construction/science/py-netCDF4/stage/usr/local/lib/python3.9/site-packages/netCDF4-1.6.4-py3.9.egg-info running install_scripts Installing nc3tonc4 script to /construction/science/py-netCDF4/stage/usr/local/bin Installing nc4tonc3 script to /construction/science/py-netCDF4/stage/usr/local/bin Installing ncinfo script to /construction/science/py-netCDF4/stage/usr/local/bin writing list of installed files to '/construction/science/py-netCDF4/.PLIST.pymodtmp' /usr/bin/strip /construction/science/py-netCDF4/stage/usr/local/lib/python3.9/site-packages/netCDF4/_netCDF4*.so (cd /construction/science/py-netCDF4/netcdf4-python-1.6.4rel/docs && /bin/sh -c '(/usr/bin/find -Ed $1 $3 | /usr/bin/cpio -dumpl $2 >/dev/null 2>&1) && /usr/bin/find -Ed $1 $3 \( -type d -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 755 "$@"'\'' . {} + -o -type f -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 0644 "$@"'\'' . {} + \)' COPYTREE_SHARE . /construction/science/py-netCDF4/stage/usr/local/share/doc/py39-netCDF4) (cd /construction/science/py-netCDF4/netcdf4-python-1.6.4rel/examples && install -m 0644 * /construction/science/py-netCDF4/stage/usr/local/share/examples/py39-netCDF4) ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX Move: bin/nc3tonc4 --> bin/nc3tonc4-3.9 Link: @bin/nc3tonc4 --> bin/nc3tonc4-3.9 Move: bin/nc4tonc3 --> bin/nc4tonc3-3.9 Link: @bin/nc4tonc3 --> bin/nc4tonc3-3.9 Move: bin/ncinfo --> bin/ncinfo-3.9 Link: @bin/ncinfo --> bin/ncinfo-3.9 ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/python3.9/site-packages/netCDF4/_netCDF4.cpython-39.so is linked to /usr/local/lib/libzstd.so.1 from archivers/zstd but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libzstd.so:archivers/zstd Error: /usr/local/lib/python3.9/site-packages/netCDF4/_netCDF4.cpython-39.so is linked to /usr/local/lib/libcurl.so.4 from ftp/curl but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libcurl.so:ftp/curl Error: /usr/local/lib/python3.9/site-packages/netCDF4/_netCDF4.cpython-39.so is linked to /usr/local/lib/libsz.so.2 from science/libaec but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libsz.so:science/libaec Error: /usr/local/lib/python3.9/site-packages/netCDF4/_netCDF4.cpython-39.so is linked to /usr/local/lib/libnghttp2.so.14 from www/libnghttp2 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libnghttp2.so:www/libnghttp2 Error: /usr/local/lib/python3.9/site-packages/netCDF4/_netCDF4.cpython-39.so is linked to /usr/local/lib/libssh2.so.1 from security/libssh2 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libssh2.so:security/libssh2 Error: /usr/local/lib/python3.9/site-packages/netCDF4/_netCDF4.cpython-39.so is linked to /usr/local/lib/libpsl.so.5 from dns/libpsl but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libpsl.so:dns/libpsl Error: /usr/local/lib/python3.9/site-packages/netCDF4/_netCDF4.cpython-39.so is linked to /usr/local/lib/libssl.so.11 from security/openssl but it is not declared as a dependency Warning: you need USES=ssl Error: /usr/local/lib/python3.9/site-packages/netCDF4/_netCDF4.cpython-39.so is linked to /usr/local/lib/libcrypto.so.11 from security/openssl but it is not declared as a dependency Warning: you need USES=ssl Error: /usr/local/lib/python3.9/site-packages/netCDF4/_netCDF4.cpython-39.so is linked to /usr/local/lib/libaec.so.0 from science/libaec but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libaec.so:science/libaec Error: /usr/local/lib/python3.9/site-packages/netCDF4/_netCDF4.cpython-39.so is linked to /usr/local/lib/libidn2.so.0 from dns/libidn2 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libidn2.so:dns/libidn2 Error: /usr/local/lib/python3.9/site-packages/netCDF4/_netCDF4.cpython-39.so is linked to /usr/local/lib/libunistring.so.5 from devel/libunistring but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libunistring.so:devel/libunistring Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:25 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py39-netCDF4-1.6.4 file sizes/checksums [38]: 0% file sizes/checksums [38]: 100% Service unavailablepacking files [38]: 0% packing files [38]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:00 TOTAL TIME 00:03:02