------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 FLAVOR=py39 UNAME_r=6.5 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/construction/science/py-MDAnalysisTests XDG_CONFIG_HOME=/construction/science/py-MDAnalysisTests XDG_CACHE_HOME=/construction/science/py-MDAnalysisTests/.cache HOME=/construction/science/py-MDAnalysisTests TMPDIR="/tmp" PATH=/construction/science/py-MDAnalysisTests/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/science/py-MDAnalysisTests/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/science/py-MDAnalysisTests XDG_CONFIG_HOME=/construction/science/py-MDAnalysisTests XDG_CACHE_HOME=/construction/science/py-MDAnalysisTests/.cache HOME=/construction/science/py-MDAnalysisTests TMPDIR="/tmp" PATH=/construction/science/py-MDAnalysisTests/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/science/py-MDAnalysisTests/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/science/py-MDAnalysisTests/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=6.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/MDAnalysisTests" EXAMPLESDIR="share/examples/MDAnalysisTests" DATADIR="share/MDAnalysisTests" WWWDIR="www/MDAnalysisTests" ETCDIR="etc/MDAnalysisTests" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/MDAnalysisTests DOCSDIR=/usr/local/share/doc/MDAnalysisTests EXAMPLESDIR=/usr/local/share/examples/MDAnalysisTests WWWDIR=/usr/local/www/MDAnalysisTests ETCDIR=/usr/local/etc/MDAnalysisTests SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes DFLY_STING_XFAIL=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_COMPRESSION_FORMAT=.tgz DEVELOPER=1 WITH_CCACHE_BUILD=yes CCACHE_DIR=/ccache UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600503 OSVERSION=9999999 OSREL=6.5 _OSRELEASE=6.5-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=13 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.pkg Installing /packages/All/libffi-3.4.4.pkg Installing /packages/All/expat-2.5.0.pkg Installing /packages/All/mpdecimal-2.5.1.pkg Installing /packages/All/ncurses-6.4.pkg ===== Message from ncurses-6.4: -- To get the terminfo database please install the terminfo-db package: pkg install terminfo-db Installing /packages/All/readline-8.2.1.pkg Installing /packages/All/gettext-runtime-0.21.1.pkg Installing /packages/All/openssl-1.1.1u,1.pkg Installing /packages/All/python39-3.9.17.pkg ===== Message from python39-3.9.17: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 Installing /packages/All/py39-setuptools-63.1.0_1.pkg Installing /packages/All/ccache-3.7.12_4.pkg Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc create symlink for gcc (world) create symlink for g++ create symlink for g++ (world) ===== Message from ccache-3.7.12_4: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. Installing /packages/All/metis-5.1.0_9.pkg ===== Message from metis-5.1.0_9: -- ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing Installing /packages/All/gmp-6.2.1.pkg Installing /packages/All/mpfr-4.2.0_1,1.pkg Installing /packages/All/mpc-1.3.1_1.pkg UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/liblz4-1.9.4,1.pkg Installing /packages/All/zstd-1.5.5.pkg Installing /packages/All/binutils-2.40_4,1.pkg Installing /packages/All/gcc12-12.2.0_6.pkg create symlink for gcc12 create symlink for gcc12 (world) create symlink for g++12 create symlink for g++12 (world) create symlink for cpp12 create symlink for cpp12 (world) ===== Message from gcc12-12.2.0_6: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc12 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.20_1,1.pkg Installing /packages/All/suitesparse-config-7.0.1_1.pkg Installing /packages/All/suitesparse-amd-3.0.3_1.pkg Installing /packages/All/suitesparse-camd-3.0.3_1.pkg Installing /packages/All/suitesparse-colamd-3.0.3_1.pkg Installing /packages/All/suitesparse-ccolamd-3.0.3_1.pkg Installing /packages/All/suitesparse-cholmod-4.0.3_1.pkg Installing /packages/All/suitesparse-umfpack-6.1.0_1.pkg Installing /packages/All/py39-numpy-1.24.1_4,1.pkg Installing /packages/All/clustalw-2.1_2.pkg Installing /packages/All/icu-73.2,1.pkg Installing /packages/All/boost-libs-1.82.0_1.pkg ===== Message from boost-libs-1.82.0_1: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. Installing /packages/All/maeparser-1.3.1_1.pkg Installing /packages/All/coordgenlibs-3.0.2.pkg Installing /packages/All/brotli-1.0.9,1.pkg Installing /packages/All/png-1.6.39.pkg Installing /packages/All/freetype2-2.12.1_2.pkg ===== Message from freetype2-2.12.1_2: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). Installing /packages/All/py39-boost-libs-1.82.0.pkg ===== Message from py39-boost-libs-1.82.0: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. Installing /packages/All/libimagequant-4.2.0_1.pkg Installing /packages/All/libdeflate-1.18.pkg Installing /packages/All/jbigkit-2.1_1.pkg Installing /packages/All/jpeg-turbo-2.1.5.1.pkg Installing /packages/All/tiff-4.4.0_1.pkg Installing /packages/All/lcms2-2.15_1.pkg Installing /packages/All/openjpeg-2.5.0.pkg Installing /packages/All/fribidi-1.0.13.pkg Installing /packages/All/graphite2-1.3.14.pkg Installing /packages/All/pcre2-10.42.pkg Installing /packages/All/libxml2-2.10.4.pkg Installing /packages/All/libiconv-1.17.pkg Installing /packages/All/glib-2.76.4,2.pkg Generating GIO modules cache Compiling glib schemas No schema files found: doing nothing. Installing /packages/All/harfbuzz-7.3.0.pkg Installing /packages/All/libraqm-0.10.1.pkg Installing /packages/All/giflib-5.2.1.pkg Installing /packages/All/webp-1.3.0_1.pkg Installing /packages/All/fontconfig-2.14.2,1.pkg Running fc-cache to build fontconfig cache... Installing /packages/All/tcl86-8.6.13.pkg Installing /packages/All/libXau-1.0.9.pkg Installing /packages/All/xorgproto-2022.1_1.pkg Installing /packages/All/libXdmcp-1.1.3.pkg Installing /packages/All/libxcb-1.15_1.pkg Installing /packages/All/libX11-1.8.6,1.pkg Installing /packages/All/libXext-1.3.4,1.pkg Installing /packages/All/libXrender-0.9.10_2.pkg Installing /packages/All/libXft-2.3.7.pkg Installing /packages/All/libXScrnSaver-1.2.4.pkg Installing /packages/All/tk86-8.6.13.pkg Installing /packages/All/py39-olefile-0.46.pkg Installing /packages/All/py39-tkinter-3.9.17_6.pkg Installing /packages/All/py39-pillow-9.5.0.pkg Installing /packages/All/qhull-8.0.2_1,1.pkg Installing /packages/All/py39-contourpy-1.0.7_1.pkg Installing /packages/All/py39-cycler-0.11.0.pkg Installing /packages/All/py39-six-1.16.0.pkg Installing /packages/All/py39-dateutil-2.8.2.pkg Installing /packages/All/py39-zipp-3.15.0.pkg Installing /packages/All/py39-importlib-resources-5.4.0_1.pkg Installing /packages/All/py39-pytz-2023.3,1.pkg Installing /packages/All/py39-pyparsing-3.0.9_2.pkg Installing /packages/All/py39-tornado-6.3.2.pkg Installing /packages/All/py39-pluggy-1.0.0_1.pkg Installing /packages/All/py39-certifi-2023.5.7.pkg Installing /packages/All/py39-kiwisolver-1.4.4_1,1.pkg Installing /packages/All/libgpg-error-1.47.pkg Installing /packages/All/libgcrypt-1.10.2.pkg Installing /packages/All/libxslt-1.1.37.pkg Installing /packages/All/py39-lxml-4.9.2.pkg Installing /packages/All/py39-appdirs-1.4.4.pkg Installing /packages/All/py39-fs2-2.4.16.pkg Installing /packages/All/py39-unicodedata2-15.0.0.pkg Installing /packages/All/py39-fonttools-4.39.4_1.pkg Installing /packages/All/py39-packaging-23.1.pkg Installing /packages/All/py39-matplotlib-3.7.1_3.pkg Installing /packages/All/libfontenc-1.1.4.pkg Installing /packages/All/mkfontscale-1.2.1.pkg Installing /packages/All/adobe-cmaps-20051217_4.pkg Installing /packages/All/py39-reportlab-3.6.13.pkg Installing /packages/All/rdkit-2023.03.2.pkg Installing /packages/All/py39-biopython-1.81_1.pkg Installing /packages/All/py39-mrcfile-1.4.3_1.pkg Installing /packages/All/blas-3.11.0_1.pkg Installing /packages/All/py39-scipy-1.10.1_1.pkg Installing /packages/All/py39-GridDataFormats-1.0.1_1.pkg Installing /packages/All/py39-fasteners-0.18.pkg Installing /packages/All/py39-gsd-3.0.1.pkg Installing /packages/All/py39-joblib-1.1.0.pkg Installing /packages/All/py39-msgpack-1.0.5_1.pkg Installing /packages/All/py39-mmtf-python-1.1.3_1.pkg Installing /packages/All/py39-decorator-5.1.1.pkg Installing /packages/All/libnghttp2-1.53.0.pkg Installing /packages/All/libssh2-1.11.0,3.pkg Installing /packages/All/libunistring-1.1.pkg Installing /packages/All/libidn2-2.3.4.pkg Installing /packages/All/libpsl-0.21.2_3.pkg Installing /packages/All/ca_root_nss-3.89.1.pkg ===== Message from ca_root_nss-3.89.1: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem Installing /packages/All/curl-8.1.2.pkg UNFLAVORED databases/sqlite3 -> use databases/sqlite3@default Installing /packages/All/libedit-3.1.20221030,1.pkg Installing /packages/All/sqlite3-3.42.0,1.pkg Installing /packages/All/proj-9.2.0,1.pkg Installing /packages/All/libgeotiff-1.7.1_3.pkg Installing /packages/All/json-c-0.16.pkg Installing /packages/All/freexl-1.0.6.pkg Installing /packages/All/geos-3.11.2.pkg Installing /packages/All/libaec-1.0.6.pkg Installing /packages/All/hdf5-1.12.2_2,1.pkg Installing /packages/All/uriparser-0.9.6.pkg Installing /packages/All/minizip-1.2.11.pkg Installing /packages/All/libkml-1.3.0_25.pkg Installing /packages/All/lerc-4.0.0.pkg Installing /packages/All/pkgconf-1.8.1,1.pkg Installing /packages/All/netcdf-4.9.2.pkg Installing /packages/All/nspr-4.35.pkg UNFLAVORED databases/sqlite3 -> use databases/sqlite3@default Installing /packages/All/nss-3.91.pkg Installing /packages/All/libglvnd-1.6.0.pkg Installing /packages/All/pixman-0.42.2.pkg Installing /packages/All/cairo-1.17.4_2,3.pkg Installing /packages/All/poppler-data-0.4.12.pkg Installing /packages/All/gcc9-9.5.0_1.pkg create symlink for gcc9 create symlink for gcc9 (world) create symlink for g++9 create symlink for g++9 (world) create symlink for cpp9 create symlink for cpp9 (world) ===== Message from gcc9-9.5.0_1: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc9 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Unsupported by upstream. Use GCC 10 or newer instead.. It is scheduled to be removed on or after 2024-06-30. Installing /packages/All/poppler-23.05.0.pkg Installing /packages/All/sfcgal-1.4.1_4.pkg Installing /packages/All/librttopo-1.1.0.pkg UNFLAVORED databases/sqlite3 -> use databases/sqlite3@default Installing /packages/All/spatialite-5.0.1_5.pkg Installing /packages/All/xerces-c3-3.2.4.pkg Installing /packages/All/postgresql13-client-13.11.pkg ===== Message from postgresql13-client-13.11: -- The PostgreSQL port has a collection of "side orders": postgresql-docs For all of the html documentation p5-Pg A perl5 API for client access to PostgreSQL databases. postgresql-tcltk If you want tcl/tk client support. postgresql-jdbc For Java JDBC support. postgresql-odbc For client access from unix applications using ODBC as access method. Not needed to access unix PostgreSQL servers from Win32 using ODBC. See below. ruby-postgres, py-psycopg2 For client access to PostgreSQL databases using the ruby & python languages. postgresql-plperl, postgresql-pltcl & postgresql-plruby For using perl5, tcl & ruby as procedural languages. postgresql-contrib Lots of contributed utilities, postgresql functions and datatypes. There you find pg_standby, pgcrypto and many other cool things. etc... UNFLAVORED databases/sqlite3 -> use databases/sqlite3@default Installing /packages/All/gdal-3.7.0_2.pkg Installing /packages/All/py39-gdal-3.7.0.pkg Installing /packages/All/libltdl-2.4.7.pkg Installing /packages/All/libgd-2.3.3_5,1.pkg Installing /packages/All/libdatrie-0.2.13_1.pkg Installing /packages/All/libthai-0.1.29.pkg ===== Message from libthai-0.1.29: -- ===> NOTICE: The libthai port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing Installing /packages/All/font-bh-ttf-1.0.3_4.pkg Running fc-cache to build fontconfig cache... Installing /packages/All/font-misc-meltho-1.0.3_4.pkg Installing /packages/All/font-misc-ethiopic-1.0.4.pkg Installing /packages/All/encodings-1.0.5,1.pkg Installing /packages/All/dejavu-2.37_1.pkg Running fc-cache to build fontconfig cache... ===== Message from dejavu-2.37_1: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Installing /packages/All/xorg-fonts-truetype-7.7_1.pkg Installing /packages/All/pango-1.50.14.pkg Installing /packages/All/libICE-1.1.0_1,1.pkg Installing /packages/All/libSM-1.2.3,1.pkg Installing /packages/All/libXt-1.2.1,1.pkg Installing /packages/All/libXmu-1.1.3,1.pkg Installing /packages/All/libXpm-3.5.15.pkg Installing /packages/All/libXaw-1.0.14,2.pkg Installing /packages/All/graphviz-7.1.0_6.pkg Installing /packages/All/py39-pygraphviz-1.6.pkg Installing /packages/All/py39-cython-0.29.35.pkg UNFLAVORED databases/sqlite3 -> use databases/sqlite3@default Installing /packages/All/py39-sqlite3-3.9.17_7.pkg Installing /packages/All/py39-tzdata-2023.3_1.pkg Installing /packages/All/py39-bottleneck-1.3.7_1.pkg Installing /packages/All/py39-numexpr-2.8.4_1.pkg Installing /packages/All/py39-pandas-2.0.2,1.pkg ===== Message from py39-pandas-2.0.2,1: -- Install math/py-statsmodels to enable parts of pandas.stats. Install devel/py-xarray to enable the to_xarray() function. Installing /packages/All/py39-pydot-1.4.2.pkg Installing /packages/All/py39-scikit-sparse-0.4.8.pkg Installing /packages/All/libyaml-0.2.5.pkg Installing /packages/All/py39-yaml-6.0.pkg Installing /packages/All/py39-networkx-3.1_1,1.pkg Installing /packages/All/py39-patsy-0.5.3_1.pkg Installing /packages/All/py39-statsmodels-0.14.0.pkg Installing /packages/All/py39-seaborn-0.11.2_1.pkg Installing /packages/All/py39-tqdm-4.65.0.pkg Installing /packages/All/py39-MDAnalysis-2.3.0_1.pkg Installing /packages/All/py39-attrs-23.1.0.pkg Installing /packages/All/py39-mdurl-0.1.2_2.pkg Installing /packages/All/py39-markdown-it-py-2.2.0.pkg Installing /packages/All/py39-pygments-2.15.1.pkg Installing /packages/All/py39-rich-13.4.2.pkg Installing /packages/All/py39-sortedcontainers-2.4.0.pkg Installing /packages/All/py39-importlib-metadata-6.7.0.pkg Installing /packages/All/py39-click-8.1.3.pkg Installing /packages/All/py39-mypy_extensions-1.0.0.pkg Installing /packages/All/py39-pathspec-0.11.1_1.pkg Installing /packages/All/py39-platformdirs-3.5.2.pkg Installing /packages/All/py39-regex-2022.9.13.pkg Installing /packages/All/py39-colorama-0.4.5.pkg Installing /packages/All/py39-typing-extensions-4.6.3.pkg Installing /packages/All/py39-tomli-2.0.1_2.pkg Installing /packages/All/py39-black-23.3.0.pkg Installing /packages/All/py39-asgiref-3.7.2_1.pkg Installing /packages/All/py39-sqlparse-0.4.4.pkg Installing /packages/All/py39-django32-3.2.20.pkg Installing /packages/All/py39-dpcontracts-0.6.0.pkg Installing /packages/All/py39-atomicwrites-1.4.1.pkg Installing /packages/All/py39-lark-1.1.5.pkg Installing /packages/All/py39-iniconfig-1.1.1_1.pkg Installing /packages/All/py39-py-1.11.0.pkg Installing /packages/All/py39-exceptiongroup-1.1.1.pkg Installing /packages/All/py39-pytest-7.3.1,1.pkg Installing /packages/All/py39-async_timeout-4.0.2.pkg Installing /packages/All/py39-redis-4.5.5.pkg Installing /packages/All/py39-hypothesis-6.77.0.pkg UNFLAVORED devel/binutils -> use devel/binutils@native UNFLAVORED databases/sqlite3 -> use databases/sqlite3@default UNFLAVORED databases/sqlite3 -> use databases/sqlite3@default UNFLAVORED databases/sqlite3 -> use databases/sqlite3@default UNFLAVORED databases/sqlite3 -> use databases/sqlite3@default UNFLAVORED databases/sqlite3 -> use databases/sqlite3@default SUCCEEDED 00:00:35 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py39-MDAnalysisTests-2.3.0_1 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py39-MDAnalysisTests-2.3.0_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-MDAnalysisTests-2.3.0_1 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py39-MDAnalysisTests-2.3.0_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-MDAnalysisTests-2.3.0_1 for building => SHA256 Checksum OK for MDAnalysisTests-2.3.0.tar.gz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py39-MDAnalysisTests-2.3.0_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-MDAnalysisTests-2.3.0_1 for building ===> Extracting for py39-MDAnalysisTests-2.3.0_1 => SHA256 Checksum OK for MDAnalysisTests-2.3.0.tar.gz. Extracted Memory Use: 96.83M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py39-MDAnalysisTests-2.3.0_1 ===> Applying ports patches for py39-MDAnalysisTests-2.3.0_1 from /xports/science/py-MDAnalysisTests/files SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py39-MDAnalysisTests-2.3.0_1 depends on package: py39-setuptools>=63.1.0 - found ===> py39-MDAnalysisTests-2.3.0_1 depends on file: /usr/local/bin/python3.9 - found ===> py39-MDAnalysisTests-2.3.0_1 depends on file: /usr/local/bin/ccache - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py39-MDAnalysisTests-2.3.0_1 depends on package: py39-setuptools>=63.1.0 - found ===> py39-MDAnalysisTests-2.3.0_1 depends on file: /usr/local/bin/python3.9 - found ===> py39-MDAnalysisTests-2.3.0_1 depends on file: /usr/local/bin/ccache - found ===> Configuring for py39-MDAnalysisTests-2.3.0_1 running config SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py39-MDAnalysisTests-2.3.0_1 running build running build_py creating build creating build/lib creating build/lib/MDAnalysisTests copying MDAnalysisTests/__init__.py -> build/lib/MDAnalysisTests copying MDAnalysisTests/datafiles.py -> build/lib/MDAnalysisTests copying MDAnalysisTests/dummy.py -> build/lib/MDAnalysisTests copying MDAnalysisTests/test_api.py -> build/lib/MDAnalysisTests copying MDAnalysisTests/util.py -> build/lib/MDAnalysisTests creating build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/__init__.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_align.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_base.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_bat.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_contacts.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_data.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_density.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_dielectric.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_diffusionmap.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_dihedrals.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_distances.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_encore.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_gnm.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_helix_analysis.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_hole2.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_leaflet.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_lineardensity.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_msd.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_nucleicacids.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_nuclinfo.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_pca.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_persistencelength.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_psa.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_rdf.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_rdf_s.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_rms.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_waterdynamics.py -> build/lib/MDAnalysisTests/analysis copying MDAnalysisTests/analysis/test_wbridge.py -> build/lib/MDAnalysisTests/analysis creating build/lib/MDAnalysisTests/auxiliary copying MDAnalysisTests/auxiliary/__init__.py -> build/lib/MDAnalysisTests/auxiliary copying MDAnalysisTests/auxiliary/base.py -> build/lib/MDAnalysisTests/auxiliary copying MDAnalysisTests/auxiliary/test_core.py -> build/lib/MDAnalysisTests/auxiliary copying MDAnalysisTests/auxiliary/test_xvg.py -> build/lib/MDAnalysisTests/auxiliary creating build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/__init__.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/base.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/reference.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_amber_inpcrd.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_chainreader.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_chemfiles.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_copying.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_crd.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_dcd.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_dlpoly.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_dms.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_fhiaims.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_gms.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_gro.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_gsd.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_h5md.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_lammps.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_memory.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_mmtf.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_mol2.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_namdbin.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_netcdf.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_null.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_pdb.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_pdbqt.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_pqr.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_reader_api.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_timestep_api.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_trj.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_trz.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_txyz.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_windows.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_writer_api.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_writer_registration.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_xdr.py -> build/lib/MDAnalysisTests/coordinates copying MDAnalysisTests/coordinates/test_xyz.py -> build/lib/MDAnalysisTests/coordinates creating build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/__init__.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_accessors.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_accumulate.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_atom.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_atomgroup.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_atomselections.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_copying.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_fragments.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_group_traj_access.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_groups.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_index_dtype.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_requires.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_residue.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_residuegroup.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_segment.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_segmentgroup.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_topology.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_topologyattrs.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_topologyobjects.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_universe.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_unwrap.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_updating_atomgroup.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/test_wrap.py -> build/lib/MDAnalysisTests/core copying MDAnalysisTests/core/util.py -> build/lib/MDAnalysisTests/core creating build/lib/MDAnalysisTests/formats copying MDAnalysisTests/formats/__init__.py -> build/lib/MDAnalysisTests/formats copying MDAnalysisTests/formats/test_libdcd.py -> build/lib/MDAnalysisTests/formats copying MDAnalysisTests/formats/test_libmdaxdr.py -> build/lib/MDAnalysisTests/formats creating build/lib/MDAnalysisTests/import copying MDAnalysisTests/import/__init__.py -> build/lib/MDAnalysisTests/import copying MDAnalysisTests/import/fork_called.py -> build/lib/MDAnalysisTests/import copying MDAnalysisTests/import/test_import.py -> build/lib/MDAnalysisTests/import creating build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/__init__.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_augment.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_cutil.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_distances.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_log.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_neighborsearch.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_nsgrid.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_pkdtree.py -> build/lib/MDAnalysisTests/lib copying MDAnalysisTests/lib/test_util.py -> build/lib/MDAnalysisTests/lib creating build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/__init__.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/base.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_altloc.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_crd.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_dlpoly.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_dms.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_fhiaims.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_gms.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_gro.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_gsd.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_guessers.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_hoomdxml.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_itp.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_lammpsdata.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_minimal.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_mmtf.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_mol2.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_pdb.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_pdbqt.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_pqr.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_psf.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_top.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_topology_base.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_topology_str_types.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_tprparser.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_txyz.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_xpdb.py -> build/lib/MDAnalysisTests/topology copying MDAnalysisTests/topology/test_xyz.py -> build/lib/MDAnalysisTests/topology creating build/lib/MDAnalysisTests/transformations copying MDAnalysisTests/transformations/__init__.py -> build/lib/MDAnalysisTests/transformations copying MDAnalysisTests/transformations/test_boxdimensions.py -> build/lib/MDAnalysisTests/transformations copying MDAnalysisTests/transformations/test_fit.py -> build/lib/MDAnalysisTests/transformations copying MDAnalysisTests/transformations/test_positionaveraging.py -> build/lib/MDAnalysisTests/transformations copying MDAnalysisTests/transformations/test_rotate.py -> build/lib/MDAnalysisTests/transformations copying MDAnalysisTests/transformations/test_translate.py -> build/lib/MDAnalysisTests/transformations copying MDAnalysisTests/transformations/test_wrap.py -> build/lib/MDAnalysisTests/transformations copying MDAnalysisTests/transformations/test_base.py -> build/lib/MDAnalysisTests/transformations creating build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/__init__.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_authors.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_datafiles.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_duecredit.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_failure.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_imports.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_log.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_meta.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_modelling.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_persistence.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_pickleio.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_qcprot.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_selections.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_streamio.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_transformations.py -> build/lib/MDAnalysisTests/utils copying MDAnalysisTests/utils/test_units.py -> build/lib/MDAnalysisTests/utils creating build/lib/MDAnalysisTests/visualization copying MDAnalysisTests/visualization/__init__.py -> build/lib/MDAnalysisTests/visualization copying MDAnalysisTests/visualization/test_streamlines.py -> build/lib/MDAnalysisTests/visualization creating build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/2r9r-1b.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/SiN_tric_namd.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_closed_NAMD.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_notop.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_notop_BAD.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/namd_cgenff.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/nosegid.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/parmed_ala3.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/tip125_tric_C36.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/trz_psf.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/watdyn.psf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/SiN_tric_namd.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_dims.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_dims2.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_gbis_tmd-fast1_NAMD.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/empty.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/tip125_tric_C36.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/watdyn.dcd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1grm_single.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1hvr.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/4E43.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/5a7u.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/5digitResid.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/A6PA6_alpha.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/CONECT2TER.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/RANDOM_WALK_TOPO.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/SINGLECONECT.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_closed.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_open.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/align.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/charges.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin_dry_neutral_0.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/conect_error.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/conect_parsing.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cryst_then_model.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/elements.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/incomplete.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/model_then_cryst.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/namd_cgenff.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/nmr_neopetrosiamide.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/nucl_res.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/pdbqt_querypdb.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/sameresid_diffresname.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/unordered_res.pdb -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/xl_serial.pdb -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_2019-beta3.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_2020-beta2.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_2020.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_2020_double.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_2021.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_2021_double.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_2022-rc1.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr -> build/lib/MDAnalysisTests/data/tprs copying MDAnalysisTests/data/tprs/drew_gmx_4.5.5.double.tpr -> build/lib/MDAnalysisTests/data/tprs creating build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy.gro -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy.top -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_3.3.4.top -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy.mdp -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_2018.mdp -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/adk_oplsaa.tpr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin.tpr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_2020-beta2.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_3.3.4.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded copying MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr -> build/lib/MDAnalysisTests/data/tprs/all_bonded creating build/lib/MDAnalysisTests/data/tprs/virtual_sites copying MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr -> build/lib/MDAnalysisTests/data/tprs/virtual_sites copying MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr -> build/lib/MDAnalysisTests/data/tprs/virtual_sites copying MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr -> build/lib/MDAnalysisTests/data/tprs/virtual_sites copying MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr -> build/lib/MDAnalysisTests/data/tprs/virtual_sites copying MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr -> build/lib/MDAnalysisTests/data/tprs/virtual_sites copying MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr -> build/lib/MDAnalysisTests/data/tprs/virtual_sites copying MDAnalysisTests/data/adk_oplsaa.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/dppc_vesicle_hg.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/empty_atom.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/grovels.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/huge_box.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/make_whole.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/martini_dppc_chol_bilayer.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/missing_atomname.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/plength.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/residwrap.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/residwrap_0base.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/sameresid_diffresname.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/sample_velocity_file.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/two_water_gro.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/two_water_gro_multiframe.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/two_water_gro_nonames.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/two_water_gro_widebox.gro -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa.xtc -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin.xtc -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/xyz_random_walk.xtc -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa.trr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin.trr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/surface.trr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_CA_rmsf.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_GLY_rama.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_LYS_janin.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_dihedral.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_dihedral_list.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_janin.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_oplsaa_rama.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/legacy_DCD_NAMD_coords.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/legacy_DCD_adk_coords.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/legacy_DCD_c36_coords.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/mol2_comments_header_bat.npy -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_open.crd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/2r9r-1b.xyz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/five.xyz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/mini.xyz -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ache.mdcrd.bz2 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ala.ff19SB.OPC.parm7.bz2 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/anti_md1.mdcrd.bz2 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/capped-ala.mdcrd.bz2 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/tz2.truncoct.parm7.bz2 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ache.prmtop -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/bala.prmtop -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/capped-ala.prmtop -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/chitosan.prmtop -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/parmed_fad.prmtop -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/anti.top -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/posfor.top -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ace_mbondi3.error1.parm7 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ace_mbondi3.error2.parm7 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ace_mbondi3.error3.parm7 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ace_mbondi3.negative.parm7 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ace_mbondi3.parm7 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ace_tip3p.parm7 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/parmed_ala2_solv.parm7 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/parmed_ala2_solv.rst7 -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/bala.trj -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ache.mdcrd -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/bala.ncdf -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/posfor.ncdf -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ace_mbondi3.nc -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/ace_tip3p.nc -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/tz2.truncoct.nc -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/Amber/test.inpcrd -> build/lib/MDAnalysisTests/data/Amber copying MDAnalysisTests/data/1A2C.pqr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_open.pqr -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/pdbqt_inputpdbqt.pdbqt -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1grm_elNemo_mode7.pdb.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/2r9r-1b.xyz.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/6msm.pdb.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/C12x64.xml.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/bigbox.gro.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin_protein_forces.xvg.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cryst_then_model.pdb.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/model_then_cryst.pdb.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/surface.pdb.bz2 -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/19hc.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1a28.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1osm.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/5KIH.mmtf.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/6QYR.mmtf.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/chainIDnewres.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/chainIDrepeat.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cryst_then_model.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/fullerene.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/model_then_cryst.pdb.gz -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/testENT.ent -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/test.fasta -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/helanal_bending_matrix_AdK_DIMS_H8.dat -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/helanal_bending_matrix_AdK_DIMS_H8_frames10to79.dat -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_closed.dms -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_closed_domains.dms -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/adk_closed_no_segid.dms -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/merge creating build/lib/MDAnalysisTests/data/merge/2zmm copying MDAnalysisTests/data/merge/2zmm/ligand.pdb -> build/lib/MDAnalysisTests/data/merge/2zmm copying MDAnalysisTests/data/merge/2zmm/protein.pdb -> build/lib/MDAnalysisTests/data/merge/2zmm copying MDAnalysisTests/data/merge/2zmm/water.pdb -> build/lib/MDAnalysisTests/data/merge/2zmm copying MDAnalysisTests/data/trzfile.trz -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/mol2 copying MDAnalysisTests/data/mol2/BrokenMolecule.mol2 -> build/lib/MDAnalysisTests/data/mol2 copying MDAnalysisTests/data/mol2/Ligand.mol2 -> build/lib/MDAnalysisTests/data/mol2 copying MDAnalysisTests/data/mol2/Molecule.mol2 -> build/lib/MDAnalysisTests/data/mol2 copying MDAnalysisTests/data/mol2/Molecule_comments_header.mol2 -> build/lib/MDAnalysisTests/data/mol2 copying MDAnalysisTests/data/mol2/Molecules.mol2 -> build/lib/MDAnalysisTests/data/mol2 copying MDAnalysisTests/data/mol2/sodium_ion.mol2 -> build/lib/MDAnalysisTests/data/mol2 copying MDAnalysisTests/data/mol2/zinc_856218.mol2 -> build/lib/MDAnalysisTests/data/mol2 creating build/lib/MDAnalysisTests/data/contacts copying MDAnalysisTests/data/contacts/villin_folded.gro.bz2 -> build/lib/MDAnalysisTests/data/contacts copying MDAnalysisTests/data/contacts/villin_unfolded.gro.bz2 -> build/lib/MDAnalysisTests/data/contacts copying MDAnalysisTests/data/contacts/2F4K_qlist5_remap.dat -> build/lib/MDAnalysisTests/data/contacts creating build/lib/MDAnalysisTests/data/capping copying MDAnalysisTests/data/capping/aaqaa.gro -> build/lib/MDAnalysisTests/data/capping copying MDAnalysisTests/data/capping/ace.pdb -> build/lib/MDAnalysisTests/data/capping copying MDAnalysisTests/data/capping/maestro_aaqaa_capped.pdb -> build/lib/MDAnalysisTests/data/capping copying MDAnalysisTests/data/capping/nma.pdb -> build/lib/MDAnalysisTests/data/capping creating build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/albite_triclinic.data -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/albite_triclinic.dump -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2 -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/datatest.data -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/datatest.trz -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/deletedatoms.data -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/hydrogen-class1.data -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/hydrogen-class1.data2 -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/ifabp_apo_100mM.data.bz2 -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/ifabp_apo_100mM.dcd -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/ifabp_apo_100mM.in -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/mini.data -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/spce_all_coords.lammpstrj.bz2 -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/spce_no_coords.lammpstrj.bz2 -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/wat.lammpstrj.bz2 -> build/lib/MDAnalysisTests/data/lammps copying MDAnalysisTests/data/lammps/wat.lammpstrj_long.bz2 -> build/lib/MDAnalysisTests/data/lammps creating build/lib/MDAnalysisTests/data/gms copying MDAnalysisTests/data/gms/surf2wat.gms -> build/lib/MDAnalysisTests/data/gms copying MDAnalysisTests/data/gms/symopt.gms -> build/lib/MDAnalysisTests/data/gms copying MDAnalysisTests/data/gms/c1opt.gms.gz -> build/lib/MDAnalysisTests/data/gms creating build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/CONFIG -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/CONFIG_minimal -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/CONFIG_order -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/HISTORY -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/HISTORY_classic -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/HISTORY_minimal -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/HISTORY_minimal_cell -> build/lib/MDAnalysisTests/data/dlpoly copying MDAnalysisTests/data/dlpoly/HISTORY_order -> build/lib/MDAnalysisTests/data/dlpoly creating build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/README.md -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/create_data.py -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/create_h5md_data.py -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/new_hexane.arc -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.arc -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.dcd -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.gro -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.gro.bz2 -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.h5md -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.trr -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.txyz -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.xtc -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.xyz -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test.xyz.bz2 -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test_incomplete_vel.gro -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/coordinates/test_topology.pdb -> build/lib/MDAnalysisTests/data/coordinates copying MDAnalysisTests/data/bad_num_col.xvg -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/test.xvg -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/test_highf.xvg -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/test_lowf.xvg -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/173D.mmtf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/1ubq-less-optional.mmtf -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/3NJW-onlyrequired.mmtf -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/analysis copying MDAnalysisTests/data/analysis/1k5i_c36.pdb.gz -> build/lib/MDAnalysisTests/data/analysis copying MDAnalysisTests/data/analysis/1k5i_c36.psf.gz -> build/lib/MDAnalysisTests/data/analysis copying MDAnalysisTests/data/analysis/YiiP_lipids.gro.gz -> build/lib/MDAnalysisTests/data/analysis copying MDAnalysisTests/data/analysis/YiiP_lipids.xtc -> build/lib/MDAnalysisTests/data/analysis copying MDAnalysisTests/data/analysis/align_bound.pdb.gz -> build/lib/MDAnalysisTests/data/analysis copying MDAnalysisTests/data/analysis/align_unbound.pdb.gz -> build/lib/MDAnalysisTests/data/analysis copying MDAnalysisTests/data/example.gsd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/example_bonds.gsd -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/example_longer.gsd -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/windows copying MDAnalysisTests/data/windows/README.md -> build/lib/MDAnalysisTests/data/windows copying MDAnalysisTests/data/windows/WIN_HISTORY -> build/lib/MDAnalysisTests/data/windows copying MDAnalysisTests/data/windows/WIN_ache.mdcrd -> build/lib/MDAnalysisTests/data/windows copying MDAnalysisTests/data/windows/WIN_nmr_neopetrosiamide.pdb -> build/lib/MDAnalysisTests/data/windows copying MDAnalysisTests/data/windows/WIN_test.arc -> build/lib/MDAnalysisTests/data/windows copying MDAnalysisTests/data/windows/WIN_wat.lammpstrj -> build/lib/MDAnalysisTests/data/windows copying MDAnalysisTests/data/atomtypes.itp -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/atomtypes_charge.itp -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/edited_itp.itp -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/gromacs_ala10.itp -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/itp_nomass.itp -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/no_endif_spc.itp -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/spce.itp -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/tip5p.itp -> build/lib/MDAnalysisTests/data creating build/lib/MDAnalysisTests/data/gromacs creating build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff copying MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/ff_dum.itp -> build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff copying MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/ffbonded.itp -> build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff copying MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/ffnonbonded.itp -> build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff copying MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/forcefield.itp -> build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff copying MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/ions.itp -> build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff copying MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/spc.itp -> build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff copying MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/test.itp -> build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff copying MDAnalysisTests/data/adk_open.coor -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/cobrotoxin.h5md -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/fhiaims.in -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/bad_top.top -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/gromacs_ala10.top -> build/lib/MDAnalysisTests/data copying MDAnalysisTests/data/molecule.sdf -> build/lib/MDAnalysisTests/data SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py39-MDAnalysisTests-2.3.0_1 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> py39-MDAnalysisTests-2.3.0_1 depends on package: py39-MDAnalysis>0 - found ===> py39-MDAnalysisTests-2.3.0_1 depends on package: py39-hypothesis>0 - found ===> py39-MDAnalysisTests-2.3.0_1 depends on package: py39-setuptools>=63.1.0 - found ===> py39-MDAnalysisTests-2.3.0_1 depends on file: /usr/local/bin/python3.9 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py39-MDAnalysisTests-2.3.0_1 ===> py39-MDAnalysisTests-2.3.0_1 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> py39-MDAnalysisTests-2.3.0_1 depends on package: py39-MDAnalysis>0 - found ===> py39-MDAnalysisTests-2.3.0_1 depends on package: py39-hypothesis>0 - found ===> py39-MDAnalysisTests-2.3.0_1 depends on package: py39-setuptools>=63.1.0 - found ===> py39-MDAnalysisTests-2.3.0_1 depends on file: /usr/local/bin/python3.9 - found ===> Generating temporary packing list running install /usr/local/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running install_lib creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9 creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests copying build/lib/MDAnalysisTests/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests copying build/lib/MDAnalysisTests/datafiles.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests copying build/lib/MDAnalysisTests/dummy.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests copying build/lib/MDAnalysisTests/test_api.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests copying build/lib/MDAnalysisTests/util.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_align.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_base.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_bat.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_contacts.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_data.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_density.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_dielectric.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_diffusionmap.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_dihedrals.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_distances.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_encore.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_gnm.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_helix_analysis.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_hole2.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_leaflet.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_lineardensity.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_msd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_nucleicacids.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_nuclinfo.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_pca.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_persistencelength.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_psa.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_rdf.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_rdf_s.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_rms.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_waterdynamics.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis copying build/lib/MDAnalysisTests/analysis/test_wbridge.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/auxiliary copying build/lib/MDAnalysisTests/auxiliary/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/auxiliary copying build/lib/MDAnalysisTests/auxiliary/base.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/auxiliary copying build/lib/MDAnalysisTests/auxiliary/test_core.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/auxiliary copying build/lib/MDAnalysisTests/auxiliary/test_xvg.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/auxiliary creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/base.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/reference.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_amber_inpcrd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_chainreader.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_chemfiles.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_copying.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_crd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_dcd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_dlpoly.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_dms.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_fhiaims.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_gms.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_gro.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_gsd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_h5md.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_lammps.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_memory.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_mmtf.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_mol2.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_namdbin.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_netcdf.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_null.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_pdb.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_pdbqt.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_pqr.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_reader_api.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_timestep_api.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_trj.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_trz.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_txyz.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_windows.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_writer_api.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_writer_registration.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_xdr.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates copying build/lib/MDAnalysisTests/coordinates/test_xyz.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_accessors.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_accumulate.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_atom.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_atomgroup.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_atomselections.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_copying.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_fragments.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_group_traj_access.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_groups.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_index_dtype.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_requires.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_residue.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_residuegroup.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_segment.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_segmentgroup.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_topology.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_topologyattrs.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_topologyobjects.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_universe.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_unwrap.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_updating_atomgroup.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/test_wrap.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core copying build/lib/MDAnalysisTests/core/util.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/formats copying build/lib/MDAnalysisTests/formats/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/formats copying build/lib/MDAnalysisTests/formats/test_libdcd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/formats copying build/lib/MDAnalysisTests/formats/test_libmdaxdr.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/formats creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/import copying build/lib/MDAnalysisTests/import/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/import copying build/lib/MDAnalysisTests/import/fork_called.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/import copying build/lib/MDAnalysisTests/import/test_import.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/import creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_augment.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_cutil.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_distances.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_log.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_neighborsearch.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_nsgrid.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_pkdtree.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib copying build/lib/MDAnalysisTests/lib/test_util.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/base.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_altloc.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_crd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_dlpoly.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_dms.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_fhiaims.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_gms.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_gro.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_gsd.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_guessers.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_hoomdxml.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_itp.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_lammpsdata.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_minimal.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_mmtf.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_mol2.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_pdb.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_pdbqt.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_pqr.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_psf.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_top.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_topology_base.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_topology_str_types.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_tprparser.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_txyz.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_xpdb.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology copying build/lib/MDAnalysisTests/topology/test_xyz.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/transformations copying build/lib/MDAnalysisTests/transformations/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/transformations copying build/lib/MDAnalysisTests/transformations/test_boxdimensions.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/transformations copying build/lib/MDAnalysisTests/transformations/test_fit.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/transformations copying build/lib/MDAnalysisTests/transformations/test_positionaveraging.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/transformations copying build/lib/MDAnalysisTests/transformations/test_rotate.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/transformations copying build/lib/MDAnalysisTests/transformations/test_translate.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/transformations copying build/lib/MDAnalysisTests/transformations/test_wrap.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/transformations copying build/lib/MDAnalysisTests/transformations/test_base.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/transformations creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_authors.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_datafiles.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_duecredit.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_failure.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_imports.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_log.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_meta.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_modelling.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_persistence.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_pickleio.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_qcprot.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_selections.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_streamio.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_transformations.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils copying build/lib/MDAnalysisTests/utils/test_units.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/visualization copying build/lib/MDAnalysisTests/visualization/__init__.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/visualization copying build/lib/MDAnalysisTests/visualization/test_streamlines.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/visualization creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/2r9r-1b.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/SiN_tric_namd.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_closed_NAMD.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_notop.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_notop_BAD.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/namd_cgenff.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/nosegid.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/parmed_ala3.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/tip125_tric_C36.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/trz_psf.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/watdyn.psf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/SiN_tric_namd.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_dims.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_dims2.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_gbis_tmd-fast1_NAMD.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/empty.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/tip125_tric_C36.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/watdyn.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1grm_single.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1hvr.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/4E43.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/5a7u.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/5digitResid.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/A6PA6_alpha.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/CONECT2TER.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/RANDOM_WALK_TOPO.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/SINGLECONECT.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_closed.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_open.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/align.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/charges.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin_dry_neutral_0.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/conect_error.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/conect_parsing.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cryst_then_model.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/elements.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/incomplete.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/model_then_cryst.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/namd_cgenff.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/nmr_neopetrosiamide.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/nucl_res.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/pdbqt_querypdb.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/sameresid_diffresname.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/unordered_res.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/xl_serial.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2019-beta3.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2020-beta2.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2020.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2020_double.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2021.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2021_double.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_2022-rc1.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs copying build/lib/MDAnalysisTests/data/tprs/drew_gmx_4.5.5.double.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy.top -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_3.3.4.top -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy.mdp -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.mdp -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2020-beta2.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_3.3.4.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/all_bonded copying build/lib/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/all_bonded creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/virtual_sites copying build/lib/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/virtual_sites copying build/lib/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/virtual_sites copying build/lib/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/virtual_sites copying build/lib/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/virtual_sites copying build/lib/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/virtual_sites copying build/lib/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/tprs/virtual_sites copying build/lib/MDAnalysisTests/data/adk_oplsaa.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin.tpr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/dppc_vesicle_hg.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/empty_atom.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/grovels.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/huge_box.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/make_whole.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/martini_dppc_chol_bilayer.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/missing_atomname.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/plength.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/residwrap.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/residwrap_0base.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/sameresid_diffresname.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/sample_velocity_file.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/two_water_gro.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/two_water_gro_multiframe.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/two_water_gro_nonames.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/two_water_gro_widebox.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa.xtc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin.xtc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/xyz_random_walk.xtc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa.trr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin.trr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/surface.trr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa_CA_rmsf.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa_GLY_rama.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa_LYS_janin.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa_dihedral.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa_dihedral_list.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa_janin.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_oplsaa_rama.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/legacy_DCD_NAMD_coords.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/legacy_DCD_adk_coords.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/legacy_DCD_c36_coords.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/mol2_comments_header_bat.npy -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_open.crd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/2r9r-1b.xyz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/five.xyz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/mini.xyz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ache.mdcrd.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ala.ff19SB.OPC.parm7.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/anti_md1.mdcrd.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/capped-ala.mdcrd.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/tz2.truncoct.parm7.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ache.prmtop -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/bala.prmtop -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/capped-ala.prmtop -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/chitosan.prmtop -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/parmed_fad.prmtop -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/anti.top -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/posfor.top -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ace_mbondi3.error1.parm7 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ace_mbondi3.error2.parm7 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ace_mbondi3.error3.parm7 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ace_mbondi3.negative.parm7 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ace_mbondi3.parm7 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ace_tip3p.parm7 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/parmed_ala2_solv.parm7 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/parmed_ala2_solv.rst7 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/bala.trj -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ache.mdcrd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/bala.ncdf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/posfor.ncdf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ace_mbondi3.nc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/ace_tip3p.nc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/tz2.truncoct.nc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/Amber/test.inpcrd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/Amber copying build/lib/MDAnalysisTests/data/1A2C.pqr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_open.pqr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/pdbqt_inputpdbqt.pdbqt -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1grm_elNemo_mode7.pdb.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/2r9r-1b.xyz.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/6msm.pdb.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/C12x64.xml.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/bigbox.gro.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin_protein_forces.xvg.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cryst_then_model.pdb.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/model_then_cryst.pdb.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/surface.pdb.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/19hc.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1a28.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1osm.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/5KIH.mmtf.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/6QYR.mmtf.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/chainIDnewres.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/chainIDrepeat.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cryst_then_model.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/fullerene.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/model_then_cryst.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/testENT.ent -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/test.fasta -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/helanal_bending_matrix_AdK_DIMS_H8.dat -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/helanal_bending_matrix_AdK_DIMS_H8_frames10to79.dat -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_closed.dms -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_closed_domains.dms -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/adk_closed_no_segid.dms -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/merge creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/merge/2zmm copying build/lib/MDAnalysisTests/data/merge/2zmm/ligand.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/merge/2zmm copying build/lib/MDAnalysisTests/data/merge/2zmm/protein.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/merge/2zmm copying build/lib/MDAnalysisTests/data/merge/2zmm/water.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/merge/2zmm copying build/lib/MDAnalysisTests/data/trzfile.trz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/mol2/BrokenMolecule.mol2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/mol2/Ligand.mol2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/mol2/Molecule.mol2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/mol2/Molecule_comments_header.mol2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/mol2/Molecules.mol2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/mol2/sodium_ion.mol2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/mol2 copying build/lib/MDAnalysisTests/data/mol2/zinc_856218.mol2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/mol2 creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/contacts copying build/lib/MDAnalysisTests/data/contacts/villin_folded.gro.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/contacts copying build/lib/MDAnalysisTests/data/contacts/villin_unfolded.gro.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/contacts copying build/lib/MDAnalysisTests/data/contacts/2F4K_qlist5_remap.dat -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/contacts creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/capping copying build/lib/MDAnalysisTests/data/capping/aaqaa.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/capping copying build/lib/MDAnalysisTests/data/capping/ace.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/capping copying build/lib/MDAnalysisTests/data/capping/maestro_aaqaa_capped.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/capping copying build/lib/MDAnalysisTests/data/capping/nma.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/capping creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/albite_triclinic.data -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/albite_triclinic.dump -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/datatest.data -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/datatest.trz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/deletedatoms.data -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/hydrogen-class1.data -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/hydrogen-class1.data2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/ifabp_apo_100mM.data.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/ifabp_apo_100mM.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/ifabp_apo_100mM.in -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/mini.data -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/spce_all_coords.lammpstrj.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/spce_no_coords.lammpstrj.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/wat.lammpstrj.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/lammps copying build/lib/MDAnalysisTests/data/lammps/wat.lammpstrj_long.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/lammps creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/gms copying build/lib/MDAnalysisTests/data/gms/surf2wat.gms -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/gms copying build/lib/MDAnalysisTests/data/gms/symopt.gms -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/gms copying build/lib/MDAnalysisTests/data/gms/c1opt.gms.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/gms creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/CONFIG -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/CONFIG_minimal -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/CONFIG_order -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/HISTORY -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/HISTORY_classic -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/HISTORY_minimal -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/HISTORY_minimal_cell -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/dlpoly copying build/lib/MDAnalysisTests/data/dlpoly/HISTORY_order -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/dlpoly creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/README.md -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/create_data.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/create_h5md_data.py -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/new_hexane.arc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.arc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.dcd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.gro.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.h5md -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.trr -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.txyz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.xtc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.xyz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test.xyz.bz2 -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test_incomplete_vel.gro -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/coordinates/test_topology.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates copying build/lib/MDAnalysisTests/data/bad_num_col.xvg -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/test.xvg -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/test_highf.xvg -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/test_lowf.xvg -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/173D.mmtf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/1ubq-less-optional.mmtf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/3NJW-onlyrequired.mmtf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/analysis copying build/lib/MDAnalysisTests/data/analysis/1k5i_c36.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/analysis copying build/lib/MDAnalysisTests/data/analysis/1k5i_c36.psf.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/analysis copying build/lib/MDAnalysisTests/data/analysis/YiiP_lipids.gro.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/analysis copying build/lib/MDAnalysisTests/data/analysis/YiiP_lipids.xtc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/analysis copying build/lib/MDAnalysisTests/data/analysis/align_bound.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/analysis copying build/lib/MDAnalysisTests/data/analysis/align_unbound.pdb.gz -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/analysis copying build/lib/MDAnalysisTests/data/example.gsd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/example_bonds.gsd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/example_longer.gsd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/windows copying build/lib/MDAnalysisTests/data/windows/README.md -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/windows copying build/lib/MDAnalysisTests/data/windows/WIN_HISTORY -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/windows copying build/lib/MDAnalysisTests/data/windows/WIN_ache.mdcrd -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/windows copying build/lib/MDAnalysisTests/data/windows/WIN_nmr_neopetrosiamide.pdb -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/windows copying build/lib/MDAnalysisTests/data/windows/WIN_test.arc -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/windows copying build/lib/MDAnalysisTests/data/windows/WIN_wat.lammpstrj -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/windows copying build/lib/MDAnalysisTests/data/atomtypes.itp -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/atomtypes_charge.itp -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/edited_itp.itp -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/gromacs_ala10.itp -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/itp_nomass.itp -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/no_endif_spc.itp -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/spce.itp -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/tip5p.itp -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/gromacs creating /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff copying build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/ff_dum.itp -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff copying build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/ffbonded.itp -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff copying build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/ffnonbonded.itp -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff copying build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/forcefield.itp -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff copying build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/ions.itp -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff copying build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/spc.itp -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff copying build/lib/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/test.itp -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff copying build/lib/MDAnalysisTests/data/adk_open.coor -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/cobrotoxin.h5md -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/fhiaims.in -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/bad_top.top -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/gromacs_ala10.top -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data copying build/lib/MDAnalysisTests/data/molecule.sdf -> /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/datafiles.py to datafiles.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/dummy.py to dummy.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/test_api.py to test_api.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/util.py to util.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_align.py to test_align.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_base.py to test_base.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_bat.py to test_bat.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_contacts.py to test_contacts.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_data.py to test_data.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_density.py to test_density.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_dielectric.py to test_dielectric.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_diffusionmap.py to test_diffusionmap.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_dihedrals.py to test_dihedrals.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_distances.py to test_distances.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_encore.py to test_encore.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_gnm.py to test_gnm.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_helix_analysis.py to test_helix_analysis.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_hole2.py to test_hole2.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py to test_hydrogenbondautocorrel.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py to test_hydrogenbondautocorrel_deprecated.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py to test_hydrogenbonds_analysis.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_leaflet.py to test_leaflet.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_lineardensity.py to test_lineardensity.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_msd.py to test_msd.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_nucleicacids.py to test_nucleicacids.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_nuclinfo.py to test_nuclinfo.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_pca.py to test_pca.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_persistencelength.py to test_persistencelength.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_psa.py to test_psa.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_rdf.py to test_rdf.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_rdf_s.py to test_rdf_s.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_rms.py to test_rms.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_waterdynamics.py to test_waterdynamics.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/analysis/test_wbridge.py to test_wbridge.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/auxiliary/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/auxiliary/base.py to base.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/auxiliary/test_core.py to test_core.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/auxiliary/test_xvg.py to test_xvg.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/base.py to base.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/reference.py to reference.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_amber_inpcrd.py to test_amber_inpcrd.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_chainreader.py to test_chainreader.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_chemfiles.py to test_chemfiles.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_copying.py to test_copying.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_crd.py to test_crd.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_dcd.py to test_dcd.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_dlpoly.py to test_dlpoly.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_dms.py to test_dms.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_fhiaims.py to test_fhiaims.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_gms.py to test_gms.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_gro.py to test_gro.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_gsd.py to test_gsd.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_h5md.py to test_h5md.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_lammps.py to test_lammps.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_memory.py to test_memory.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_mmtf.py to test_mmtf.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_mol2.py to test_mol2.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_namdbin.py to test_namdbin.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_netcdf.py to test_netcdf.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_null.py to test_null.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_pdb.py to test_pdb.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_pdbqt.py to test_pdbqt.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_pqr.py to test_pqr.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_reader_api.py to test_reader_api.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_timestep_api.py to test_timestep_api.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_trj.py to test_trj.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_trz.py to test_trz.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_txyz.py to test_txyz.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_windows.py to test_windows.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_writer_api.py to test_writer_api.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_writer_registration.py to test_writer_registration.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_xdr.py to test_xdr.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/coordinates/test_xyz.py to test_xyz.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_accessors.py to test_accessors.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_accumulate.py to test_accumulate.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_atom.py to test_atom.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_atomgroup.py to test_atomgroup.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_atomselections.py to test_atomselections.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_copying.py to test_copying.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_fragments.py to test_fragments.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_group_traj_access.py to test_group_traj_access.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_groups.py to test_groups.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_index_dtype.py to test_index_dtype.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_requires.py to test_requires.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_residue.py to test_residue.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_residuegroup.py to test_residuegroup.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_segment.py to test_segment.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_segmentgroup.py to test_segmentgroup.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_topology.py to test_topology.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_topologyattrs.py to test_topologyattrs.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_topologyobjects.py to test_topologyobjects.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_universe.py to test_universe.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_unwrap.py to test_unwrap.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_updating_atomgroup.py to test_updating_atomgroup.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/test_wrap.py to test_wrap.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/core/util.py to util.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/formats/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/formats/test_libdcd.py to test_libdcd.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/formats/test_libmdaxdr.py to test_libmdaxdr.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/import/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/import/fork_called.py to fork_called.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/import/test_import.py to test_import.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib/test_augment.py to test_augment.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib/test_cutil.py to test_cutil.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib/test_distances.py to test_distances.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib/test_log.py to test_log.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib/test_neighborsearch.py to test_neighborsearch.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib/test_nsgrid.py to test_nsgrid.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib/test_pkdtree.py to test_pkdtree.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib/test_util.py to test_util.cpython-39.pyc /usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib/test_util.py:2209: SyntaxWarning: "is" with a literal. Did you mean "=="? byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/base.py to base.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_altloc.py to test_altloc.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_crd.py to test_crd.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_dlpoly.py to test_dlpoly.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_dms.py to test_dms.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_fhiaims.py to test_fhiaims.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_gms.py to test_gms.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_gro.py to test_gro.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_gsd.py to test_gsd.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_guessers.py to test_guessers.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_hoomdxml.py to test_hoomdxml.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_itp.py to test_itp.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_lammpsdata.py to test_lammpsdata.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_minimal.py to test_minimal.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_mmtf.py to test_mmtf.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_mol2.py to test_mol2.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_pdb.py to test_pdb.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_pdbqt.py to test_pdbqt.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_pqr.py to test_pqr.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_psf.py to test_psf.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_top.py to test_top.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_topology_base.py to test_topology_base.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_topology_str_types.py to test_topology_str_types.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_tprparser.py to test_tprparser.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_txyz.py to test_txyz.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_xpdb.py to test_xpdb.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/topology/test_xyz.py to test_xyz.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/transformations/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/transformations/test_boxdimensions.py to test_boxdimensions.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/transformations/test_fit.py to test_fit.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/transformations/test_positionaveraging.py to test_positionaveraging.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/transformations/test_rotate.py to test_rotate.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/transformations/test_translate.py to test_translate.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/transformations/test_wrap.py to test_wrap.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/transformations/test_base.py to test_base.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils/test_authors.py to test_authors.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils/test_datafiles.py to test_datafiles.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils/test_duecredit.py to test_duecredit.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils/test_failure.py to test_failure.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils/test_imports.py to test_imports.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils/test_log.py to test_log.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils/test_meta.py to test_meta.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils/test_modelling.py to test_modelling.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils/test_persistence.py to test_persistence.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils/test_pickleio.py to test_pickleio.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils/test_qcprot.py to test_qcprot.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils/test_selections.py to test_selections.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils/test_streamio.py to test_streamio.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils/test_transformations.py to test_transformations.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/utils/test_units.py to test_units.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/visualization/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/visualization/test_streamlines.py to test_streamlines.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates/create_data.py to create_data.cpython-39.pyc byte-compiling /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests/data/coordinates/create_h5md_data.py to create_h5md_data.cpython-39.pyc writing byte-compilation script '/tmp/tmpvvk54wa3.py' /usr/local/bin/python3.9 /tmp/tmpvvk54wa3.py /usr/local/lib/python3.9/site-packages/MDAnalysisTests/lib/test_util.py:2209: SyntaxWarning: "is" with a literal. Did you mean "=="? removing /tmp/tmpvvk54wa3.py running install_egg_info running egg_info writing MDAnalysisTests.egg-info/PKG-INFO writing dependency_links to MDAnalysisTests.egg-info/dependency_links.txt writing requirements to MDAnalysisTests.egg-info/requires.txt writing top-level names to MDAnalysisTests.egg-info/top_level.txt reading manifest file 'MDAnalysisTests.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'TODO' warning: no files found matching 'SUMMARY.txt' warning: no previously-included files matching '*~' found anywhere in distribution warning: no previously-included files matching '*.pkl' found anywhere in distribution adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'MDAnalysisTests.egg-info/SOURCES.txt' Copying MDAnalysisTests.egg-info to /construction/science/py-MDAnalysisTests/stage/usr/local/lib/python3.9/site-packages/MDAnalysisTests-2.3.0-py3.9.egg-info running install_scripts writing list of installed files to '/construction/science/py-MDAnalysisTests/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:05 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py39-MDAnalysisTests-2.3.0_1 file sizes/checksums [820]: 0% file sizes/checksums [820]: 12% file sizes/checksums [820]: 24% file sizes/checksums [820]: 36% file sizes/checksums [820]: 48% file sizes/checksums [820]: 60% file sizes/checksums [820]: 73% file sizes/checksums [820]: 85% file sizes/checksums [820]: 97% file sizes/checksums [820]: 100% Service unavailablepacking files [820]: 0% packing files [820]: 12% packing files [820]: 24% packing files [820]: 36% packing files [820]: 48% packing files [820]: 60% packing files [820]: 73% packing files [820]: 85% packing files [820]: 97% packing files [820]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:09 TOTAL TIME 00:00:54