------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 UNAME_r=6.5 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/construction/science/minc2 XDG_CONFIG_HOME=/construction/science/minc2 XDG_CACHE_HOME=/construction/science/minc2/.cache HOME=/construction/science/minc2 TMPDIR="/tmp" PATH=/construction/science/minc2/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/science/minc2/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 DEFAULT_AUTOCONF=2.71 CONFIG_SITE=/xports/Templates/config.site lt_cv_sys_max_cmd_len=262144 SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- --enable-shared=yes --enable-static=yes --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/construction/science/minc2 XDG_CONFIG_HOME=/construction/science/minc2 XDG_CACHE_HOME=/construction/science/minc2/.cache HOME=/construction/science/minc2 TMPDIR="/tmp" PATH=/construction/science/minc2/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/science/minc2/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 DEFAULT_AUTOCONF=2.71 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -Wno-error=return-type -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-I/usr/local/include" LDFLAGS=" -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS=" -pipe -Wno-error=return-type -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/science/minc2/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- OSREL=6.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.32.1 PERL_VER=5.32 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.32 PROFILE="@comment " DOCSDIR="share/doc/minc" EXAMPLESDIR="share/examples/minc" DATADIR="share/minc" WWWDIR="www/minc" ETCDIR="etc/minc" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/minc DOCSDIR=/usr/local/share/doc/minc EXAMPLESDIR=/usr/local/share/examples/minc WWWDIR=/usr/local/www/minc ETCDIR=/usr/local/etc/minc SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes DFLY_STING_XFAIL=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_COMPRESSION_FORMAT=.tgz DEVELOPER=1 WITH_CCACHE_BUILD=yes CCACHE_DIR=/ccache UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600503 OSVERSION=9999999 OSREL=6.5 _OSRELEASE=6.5-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=13 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/ncurses-6.4.pkg ===== Message from ncurses-6.4: -- To get the terminfo database please install the terminfo-db package: pkg install terminfo-db Installing /packages/All/indexinfo-0.3.1.pkg Installing /packages/All/libtextstyle-0.21.1.pkg Installing /packages/All/readline-8.2.1.pkg Installing /packages/All/gettext-runtime-0.21.1.pkg Installing /packages/All/m4-1.4.19,1.pkg Installing /packages/All/bison-3.8.2,1.pkg Installing /packages/All/gmake-4.3_2.pkg Installing /packages/All/autoconf-switch-20220527.pkg Installing /packages/All/perl5-5.32.1_3.pkg Installing /packages/All/autoconf-2.71.pkg Installing /packages/All/automake-1.16.5.pkg Installing /packages/All/libtool-2.4.7_1.pkg Installing /packages/All/ccache-3.7.12_4.pkg Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc create symlink for gcc (world) create symlink for g++ create symlink for g++ (world) ===== Message from ccache-3.7.12_4: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. Installing /packages/All/libaec-1.0.6.pkg Installing /packages/All/gmp-6.2.1.pkg Installing /packages/All/mpfr-4.2.0_1,1.pkg Installing /packages/All/mpc-1.3.1_1.pkg UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/liblz4-1.9.4,1.pkg Installing /packages/All/zstd-1.5.5.pkg Installing /packages/All/binutils-2.40_4,1.pkg Installing /packages/All/gcc12-12.2.0_6.pkg create symlink for gcc12 create symlink for gcc12 (world) create symlink for g++12 create symlink for g++12 (world) create symlink for cpp12 create symlink for cpp12 (world) ===== Message from gcc12-12.2.0_6: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc12 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/hdf5-1.12.2_2,1.pkg Installing /packages/All/libnghttp2-1.53.0.pkg Installing /packages/All/openssl-1.1.1u,1.pkg Installing /packages/All/libssh2-1.11.0,3.pkg Installing /packages/All/libunistring-1.1.pkg Installing /packages/All/libidn2-2.3.4.pkg Installing /packages/All/libpsl-0.21.2_3.pkg Installing /packages/All/ca_root_nss-3.89.1.pkg ===== Message from ca_root_nss-3.89.1: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem Installing /packages/All/curl-8.1.2.pkg Installing /packages/All/pkgconf-1.8.1,1.pkg Installing /packages/All/netcdf-4.9.2.pkg Installing /packages/All/bash-5.2.15.pkg UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:15 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- ===> NOTICE: The minc port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> minc2-2.2.00_14,1 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> NOTICE: The minc port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> minc2-2.2.00_14,1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by minc2-2.2.00_14,1 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> NOTICE: The minc port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> minc2-2.2.00_14,1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by minc2-2.2.00_14,1 for building => SHA256 Checksum OK for BIC-MNI-minc-release-2.2.00_GH0.tar.gz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> NOTICE: The minc port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> minc2-2.2.00_14,1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by minc2-2.2.00_14,1 for building ===> Extracting for minc2-2.2.00_14,1 => SHA256 Checksum OK for BIC-MNI-minc-release-2.2.00_GH0.tar.gz. Extracted Memory Use: 12.59M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for minc2-2.2.00_14,1 ===> Applying ports patches for minc2-2.2.00_14,1 from /xports/science/minc2/files ===> Applying dragonfly patches for minc2-2.2.00_14,1 from /xports/science/minc2/dragonfly SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> minc2-2.2.00_14,1 depends on executable: bison - found ===> minc2-2.2.00_14,1 depends on package: gmake>=4.3 - found ===> minc2-2.2.00_14,1 depends on package: autoconf>=2.71 - found ===> minc2-2.2.00_14,1 depends on package: automake>=1.16.5 - found ===> minc2-2.2.00_14,1 depends on executable: libtoolize - found ===> minc2-2.2.00_14,1 depends on package: perl5>=5.32.r0<5.33 - found ===> minc2-2.2.00_14,1 depends on file: /usr/local/bin/ccache - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> minc2-2.2.00_14,1 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so) ===> minc2-2.2.00_14,1 depends on shared library: libnetcdf.so - found (/usr/local/lib/libnetcdf.so) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> minc2-2.2.00_14,1 depends on executable: bison - found ===> minc2-2.2.00_14,1 depends on package: gmake>=4.3 - found ===> minc2-2.2.00_14,1 depends on package: autoconf>=2.71 - found ===> minc2-2.2.00_14,1 depends on package: automake>=1.16.5 - found ===> minc2-2.2.00_14,1 depends on executable: libtoolize - found ===> minc2-2.2.00_14,1 depends on package: perl5>=5.32.r0<5.33 - found ===> minc2-2.2.00_14,1 depends on file: /usr/local/bin/ccache - found ===> minc2-2.2.00_14,1 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so) ===> minc2-2.2.00_14,1 depends on shared library: libnetcdf.so - found (/usr/local/lib/libnetcdf.so) ===> Configuring for minc2-2.2.00_14,1 autoreconf2.71: warning: autoconf input should be named 'configure.ac', not 'configure.in' aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'ac_config_aux'. libtoolize: copying file 'ac_config_aux/ltmain.sh' libtoolize: putting macros in 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.in, libtoolize: and rerunning libtoolize and aclocal. aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:18: warning: AC_PROG_LEX without either yywrap or noyywrap is obsolete ./lib/autoconf/programs.m4:716: _AC_PROG_LEX is expanded from... ./lib/autoconf/programs.m4:709: AC_PROG_LEX is expanded from... aclocal.m4:668: AM_PROG_LEX is expanded from... configure.in:18: the top level configure.in:21: warning: The macro `AC_HEADER_TIME' is obsolete. configure.in:21: You should run autoupdate. ./lib/autoconf/headers.m4:743: AC_HEADER_TIME is expanded from... configure.in:21: the top level configure.in:29: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.in:29: You should run autoupdate. m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.in:29: the top level configure.in:41: warning: The macro `AC_TRY_LINK' is obsolete. configure.in:41: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... m4/mni_REQUIRE_LIB.m4:7: mni_REQUIRE_LIB is expanded from... configure.in:41: the top level configure.in:42: warning: The macro `AC_TRY_LINK' is obsolete. configure.in:42: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... m4/mni_REQUIRE_LIB.m4:7: mni_REQUIRE_LIB is expanded from... configure.in:42: the top level configure.in:57: warning: The macro `AC_TRY_LINK' is obsolete. configure.in:57: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... m4/mni_REQUIRE_LIB.m4:7: mni_REQUIRE_LIB is expanded from... configure.in:57: the top level configure.in:58: warning: The macro `AC_TRY_LINK' is obsolete. configure.in:58: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... m4/mni_REQUIRE_LIB.m4:7: mni_REQUIRE_LIB is expanded from... configure.in:58: the top level configure.in:102: warning: AC_OUTPUT should be used without arguments. configure.in:102: You should run autoupdate. autoheader2.71: warning: autoconf input should be named 'configure.ac', not 'configure.in' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:16: installing 'ac_config_aux/compile' configure.in:29: installing 'ac_config_aux/config.guess' configure.in:29: installing 'ac_config_aux/config.sub' configure.in:7: installing 'ac_config_aux/install-sh' configure.in:7: installing 'ac_config_aux/missing' Makefile.am:24: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' Makefile.am: installing 'ac_config_aux/depcomp' configure.in: installing 'ac_config_aux/ylwrap' libsrc2/test/Makefile.am:1: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') parallel-tests: installing 'ac_config_aux/test-driver' testdir/Makefile.am:1: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') volume_io/Testing/Makefile.am:3: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure: loading site script /xports/Templates/config.site checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether gmake sets $(MAKE)... yes checking whether gmake supports nested variables... yes checking whether ln -s works... yes checking whether gmake sets $(MAKE)... (cached) yes checking whether gmake supports the include directive... yes (GNU style) checking for gcc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether cc accepts -g... yes checking for cc option to enable C11 features... none needed checking whether cc understands -c and -o together... yes checking dependency style of cc... gcc3 checking for g77... no checking for xlf... no checking for f77... no checking for frt... no checking for pgf77... no checking for cf77... no checking for fort77... no checking for fl32... no checking for af77... no checking for xlf90... no checking for f90... no checking for pgf90... no checking for pghpf... no checking for epcf90... no checking for gfortran... no checking for g95... no checking for xlf95... no checking for f95... no checking for fort... no checking for ifort... no checking for ifc... no checking for efc... no checking for pgfortran... no checking for pgf95... no checking for lf95... no checking for ftn... no checking for nagfor... no checking whether the compiler supports GNU Fortran 77... no checking whether accepts -g... no checking for flex... flex checking for lex output file root... lex.yy checking for lex library... none needed checking for library containing yywrap... -lfl checking whether yytext is a pointer... yes checking for bison... bison -y checking for stdio.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for strings.h... (cached) yes checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/time.h... (cached) yes checking for vfork.h... (cached) no checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for sys/time.h... (cached) yes checking for sys/stat.h... (cached) yes checking for sys/wait.h... (cached) yes checking for unistd.h... (cached) yes checking for fcntl.h... (cached) yes checking for pwd.h... (cached) yes checking for float.h... (cached) yes checking for values.h... no checking for int32_t... (cached) yes checking for int16_t... (cached) yes checking build system type... x86_64-portbld-dragonfly6.5 checking host system type... x86_64-portbld-dragonfly6.5 checking how to print strings... printf checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for fgrep... (cached) /usr/bin/fgrep checking for ld used by cc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... (cached) 262144 checking how to convert x86_64-portbld-dragonfly6.5 file names to x86_64-portbld-dragonfly6.5 format... func_convert_file_noop checking how to convert x86_64-portbld-dragonfly6.5 file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from cc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... (cached) yes checking for objdir... .libs checking if cc supports -fno-rtti -fno-exceptions... no checking for cc option to produce PIC... -fPIC -DPIC checking if cc PIC flag -fPIC -DPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking if cc supports -c -o file.o... (cached) yes checking whether the cc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... dragonfly6.5 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for pod2man... /usr/local/bin/pod2man checking for library m... yes checking for library netcdf... yes checking for library z... yes checking for library hdf5... yes checking for strdup... (cached) yes checking for mkstemp... (cached) yes checking for tempnam... yes checking for tmpnam... (cached) yes checking for getpwnam... yes checking for select... (cached) yes checking for strerror... (cached) yes checking for sysconf... (cached) yes checking for pid_t... (cached) yes checking for fork... (cached) yes checking for vfork... (cached) yes checking for working fork... yes checking for working vfork... (cached) yes checking for system... yes checking for popen... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating epm-header config.status: creating doc/Makefile config.status: creating testdir/Makefile config.status: creating libsrc2/test/Makefile config.status: creating volume_io/Makefile config.status: creating volume_io/Documentation/Makefile config.status: creating volume_io/Testing/Makefile config.status: creating progs/xfm/xfmflip config.status: creating progs/minccomplete/minccomplete config.status: creating progs/minchistory/minchistory config.status: creating progs/mincpik/mincpik config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands SUCCEEDED 00:00:18 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for minc2-2.2.00_14,1 gmake[1]: Entering directory '/construction/science/minc2/minc-release-2.2.00' gmake all-recursive gmake[2]: Entering directory '/construction/science/minc2/minc-release-2.2.00' Making all in . gmake[3]: Entering directory '/construction/science/minc2/minc-release-2.2.00' depbase=`echo progs/coordinates/voxeltoworld.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/coordinates/voxeltoworld.o -MD -MP -MF $depbase.Tpo -c -o progs/coordinates/voxeltoworld.o progs/coordinates/voxeltoworld.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo volume_io/Geometry/colour.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Geometry/colour.lo -MD -MP -MF $depbase.Tpo -c -o volume_io/Geometry/colour.lo volume_io/Geometry/colour.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Geometry/colour.lo -MD -MP -MF volume_io/Geometry/.deps/colour.Tpo -c volume_io/Geometry/colour.c -fPIC -DPIC -o volume_io/Geometry/.libs/colour.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Geometry/colour.lo -MD -MP -MF volume_io/Geometry/.deps/colour.Tpo -c volume_io/Geometry/colour.c -o volume_io/Geometry/colour.o >/dev/null 2>&1 depbase=`echo volume_io/Geometry/colour_def.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Geometry/colour_def.lo -MD -MP -MF $depbase.Tpo -c -o volume_io/Geometry/colour_def.lo volume_io/Geometry/colour_def.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Geometry/colour_def.lo -MD -MP -MF volume_io/Geometry/.deps/colour_def.Tpo -c volume_io/Geometry/colour_def.c -fPIC -DPIC -o volume_io/Geometry/.libs/colour_def.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Geometry/colour_def.lo -MD -MP -MF volume_io/Geometry/.deps/colour_def.Tpo -c volume_io/Geometry/colour_def.c -o volume_io/Geometry/colour_def.o >/dev/null 2>&1 depbase=`echo volume_io/Geometry/gaussian.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Geometry/gaussian.lo -MD -MP -MF $depbase.Tpo -c -o volume_io/Geometry/gaussian.lo volume_io/Geometry/gaussian.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Geometry/gaussian.lo -MD -MP -MF volume_io/Geometry/.deps/gaussian.Tpo -c volume_io/Geometry/gaussian.c -fPIC -DPIC -o volume_io/Geometry/.libs/gaussian.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Geometry/gaussian.lo -MD -MP -MF volume_io/Geometry/.deps/gaussian.Tpo -c volume_io/Geometry/gaussian.c -o volume_io/Geometry/gaussian.o >/dev/null 2>&1 depbase=`echo volume_io/Geometry/inverse.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Geometry/inverse.lo -MD -MP -MF $depbase.Tpo -c -o volume_io/Geometry/inverse.lo volume_io/Geometry/inverse.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Geometry/inverse.lo -MD -MP -MF volume_io/Geometry/.deps/inverse.Tpo -c volume_io/Geometry/inverse.c -fPIC -DPIC -o volume_io/Geometry/.libs/inverse.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Geometry/inverse.lo -MD -MP -MF volume_io/Geometry/.deps/inverse.Tpo -c volume_io/Geometry/inverse.c -o volume_io/Geometry/inverse.o >/dev/null 2>&1 depbase=`echo volume_io/Geometry/newton.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Geometry/newton.lo -MD -MP -MF $depbase.Tpo -c -o volume_io/Geometry/newton.lo volume_io/Geometry/newton.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Geometry/newton.lo -MD -MP -MF volume_io/Geometry/.deps/newton.Tpo -c volume_io/Geometry/newton.c -fPIC -DPIC -o volume_io/Geometry/.libs/newton.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Geometry/newton.lo -MD -MP -MF volume_io/Geometry/.deps/newton.Tpo -c volume_io/Geometry/newton.c -o volume_io/Geometry/newton.o >/dev/null 2>&1 depbase=`echo volume_io/Geometry/points.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Geometry/points.lo -MD -MP -MF $depbase.Tpo -c -o volume_io/Geometry/points.lo volume_io/Geometry/points.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Geometry/points.lo -MD -MP -MF volume_io/Geometry/.deps/points.Tpo -c volume_io/Geometry/points.c -fPIC -DPIC -o volume_io/Geometry/.libs/points.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Geometry/points.lo -MD -MP -MF volume_io/Geometry/.deps/points.Tpo -c volume_io/Geometry/points.c -o volume_io/Geometry/points.o >/dev/null 2>&1 depbase=`echo volume_io/Geometry/splines.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Geometry/splines.lo -MD -MP -MF $depbase.Tpo -c -o volume_io/Geometry/splines.lo volume_io/Geometry/splines.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Geometry/splines.lo -MD -MP -MF volume_io/Geometry/.deps/splines.Tpo -c volume_io/Geometry/splines.c -fPIC -DPIC -o volume_io/Geometry/.libs/splines.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Geometry/splines.lo -MD -MP -MF volume_io/Geometry/.deps/splines.Tpo -c volume_io/Geometry/splines.c -o volume_io/Geometry/splines.o >/dev/null 2>&1 depbase=`echo volume_io/Geometry/tensors.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Geometry/tensors.lo -MD -MP -MF $depbase.Tpo -c -o volume_io/Geometry/tensors.lo volume_io/Geometry/tensors.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Geometry/tensors.lo -MD -MP -MF volume_io/Geometry/.deps/tensors.Tpo -c volume_io/Geometry/tensors.c -fPIC -DPIC -o volume_io/Geometry/.libs/tensors.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Geometry/tensors.lo -MD -MP -MF volume_io/Geometry/.deps/tensors.Tpo -c volume_io/Geometry/tensors.c -o volume_io/Geometry/tensors.o >/dev/null 2>&1 depbase=`echo volume_io/Geometry/transforms.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Geometry/transforms.lo -MD -MP -MF $depbase.Tpo -c -o volume_io/Geometry/transforms.lo volume_io/Geometry/transforms.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Geometry/transforms.lo -MD -MP -MF volume_io/Geometry/.deps/transforms.Tpo -c volume_io/Geometry/transforms.c -fPIC -DPIC -o volume_io/Geometry/.libs/transforms.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Geometry/transforms.lo -MD -MP -MF volume_io/Geometry/.deps/transforms.Tpo -c volume_io/Geometry/transforms.c -o volume_io/Geometry/transforms.o >/dev/null 2>&1 depbase=`echo volume_io/MNI_formats/gen_xf_io.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/MNI_formats/gen_xf_io.lo -MD -MP -MF $depbase.Tpo -c -o volume_io/MNI_formats/gen_xf_io.lo volume_io/MNI_formats/gen_xf_io.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/MNI_formats/gen_xf_io.lo -MD -MP -MF volume_io/MNI_formats/.deps/gen_xf_io.Tpo -c volume_io/MNI_formats/gen_xf_io.c -fPIC -DPIC -o volume_io/MNI_formats/.libs/gen_xf_io.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/MNI_formats/gen_xf_io.lo -MD -MP -MF volume_io/MNI_formats/.deps/gen_xf_io.Tpo -c volume_io/MNI_formats/gen_xf_io.c -o volume_io/MNI_formats/gen_xf_io.o >/dev/null 2>&1 depbase=`echo volume_io/MNI_formats/gen_xfs.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/MNI_formats/gen_xfs.lo -MD -MP -MF $depbase.Tpo -c -o volume_io/MNI_formats/gen_xfs.lo volume_io/MNI_formats/gen_xfs.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/MNI_formats/gen_xfs.lo -MD -MP -MF volume_io/MNI_formats/.deps/gen_xfs.Tpo -c volume_io/MNI_formats/gen_xfs.c -fPIC -DPIC -o volume_io/MNI_formats/.libs/gen_xfs.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/MNI_formats/gen_xfs.lo -MD -MP -MF volume_io/MNI_formats/.deps/gen_xfs.Tpo -c volume_io/MNI_formats/gen_xfs.c -o volume_io/MNI_formats/gen_xfs.o >/dev/null 2>&1 depbase=`echo volume_io/MNI_formats/grid_transforms.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/MNI_formats/grid_transforms.lo -MD -MP -MF $depbase.Tpo -c -o volume_io/MNI_formats/grid_transforms.lo volume_io/MNI_formats/grid_transforms.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/MNI_formats/grid_transforms.lo -MD -MP -MF volume_io/MNI_formats/.deps/grid_transforms.Tpo -c volume_io/MNI_formats/grid_transforms.c -fPIC -DPIC -o volume_io/MNI_formats/.libs/grid_transforms.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/MNI_formats/grid_transforms.lo -MD -MP -MF volume_io/MNI_formats/.deps/grid_transforms.Tpo -c volume_io/MNI_formats/grid_transforms.c -o volume_io/MNI_formats/grid_transforms.o >/dev/null 2>&1 depbase=`echo volume_io/MNI_formats/mni_io.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/MNI_formats/mni_io.lo -MD -MP -MF $depbase.Tpo -c -o volume_io/MNI_formats/mni_io.lo volume_io/MNI_formats/mni_io.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/MNI_formats/mni_io.lo -MD -MP -MF volume_io/MNI_formats/.deps/mni_io.Tpo -c volume_io/MNI_formats/mni_io.c -fPIC -DPIC -o volume_io/MNI_formats/.libs/mni_io.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/MNI_formats/mni_io.lo -MD -MP -MF volume_io/MNI_formats/.deps/mni_io.Tpo -c volume_io/MNI_formats/mni_io.c -o volume_io/MNI_formats/mni_io.o >/dev/null 2>&1 depbase=`echo volume_io/MNI_formats/tag_points.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/MNI_formats/tag_points.lo -MD -MP -MF $depbase.Tpo -c -o volume_io/MNI_formats/tag_points.lo volume_io/MNI_formats/tag_points.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/MNI_formats/tag_points.lo -MD -MP -MF volume_io/MNI_formats/.deps/tag_points.Tpo -c volume_io/MNI_formats/tag_points.c -fPIC -DPIC -o volume_io/MNI_formats/.libs/tag_points.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/MNI_formats/tag_points.lo -MD -MP -MF volume_io/MNI_formats/.deps/tag_points.Tpo -c volume_io/MNI_formats/tag_points.c -o volume_io/MNI_formats/tag_points.o >/dev/null 2>&1 depbase=`echo volume_io/MNI_formats/thin_plate_spline.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/MNI_formats/thin_plate_spline.lo -MD -MP -MF $depbase.Tpo -c -o volume_io/MNI_formats/thin_plate_spline.lo volume_io/MNI_formats/thin_plate_spline.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/MNI_formats/thin_plate_spline.lo -MD -MP -MF volume_io/MNI_formats/.deps/thin_plate_spline.Tpo -c volume_io/MNI_formats/thin_plate_spline.c -fPIC -DPIC -o volume_io/MNI_formats/.libs/thin_plate_spline.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/MNI_formats/thin_plate_spline.lo -MD -MP -MF volume_io/MNI_formats/.deps/thin_plate_spline.Tpo -c volume_io/MNI_formats/thin_plate_spline.c -o volume_io/MNI_formats/thin_plate_spline.o >/dev/null 2>&1 depbase=`echo volume_io/Prog_utils/alloc.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Prog_utils/alloc.lo -MD -MP -MF $depbase.Tpo -c -o volume_io/Prog_utils/alloc.lo volume_io/Prog_utils/alloc.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Prog_utils/alloc.lo -MD -MP -MF volume_io/Prog_utils/.deps/alloc.Tpo -c volume_io/Prog_utils/alloc.c -fPIC -DPIC -o volume_io/Prog_utils/.libs/alloc.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Prog_utils/alloc.lo -MD -MP -MF volume_io/Prog_utils/.deps/alloc.Tpo -c volume_io/Prog_utils/alloc.c -o volume_io/Prog_utils/alloc.o >/dev/null 2>&1 depbase=`echo volume_io/Prog_utils/alloc_check.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Prog_utils/alloc_check.lo -MD -MP -MF $depbase.Tpo -c -o volume_io/Prog_utils/alloc_check.lo volume_io/Prog_utils/alloc_check.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Prog_utils/alloc_check.lo -MD -MP -MF volume_io/Prog_utils/.deps/alloc_check.Tpo -c volume_io/Prog_utils/alloc_check.c -fPIC -DPIC -o volume_io/Prog_utils/.libs/alloc_check.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Prog_utils/alloc_check.lo -MD -MP -MF volume_io/Prog_utils/.deps/alloc_check.Tpo -c volume_io/Prog_utils/alloc_check.c -o volume_io/Prog_utils/alloc_check.o >/dev/null 2>&1 depbase=`echo volume_io/Prog_utils/arrays.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Prog_utils/arrays.lo -MD -MP -MF $depbase.Tpo -c -o volume_io/Prog_utils/arrays.lo volume_io/Prog_utils/arrays.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Prog_utils/arrays.lo -MD -MP -MF volume_io/Prog_utils/.deps/arrays.Tpo -c volume_io/Prog_utils/arrays.c -fPIC -DPIC -o volume_io/Prog_utils/.libs/arrays.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Prog_utils/arrays.lo -MD -MP -MF volume_io/Prog_utils/.deps/arrays.Tpo -c volume_io/Prog_utils/arrays.c -o volume_io/Prog_utils/arrays.o >/dev/null 2>&1 depbase=`echo volume_io/Prog_utils/files.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Prog_utils/files.lo -MD -MP -MF $depbase.Tpo -c -o volume_io/Prog_utils/files.lo volume_io/Prog_utils/files.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Prog_utils/files.lo -MD -MP -MF volume_io/Prog_utils/.deps/files.Tpo -c volume_io/Prog_utils/files.c -fPIC -DPIC -o volume_io/Prog_utils/.libs/files.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Prog_utils/files.lo -MD -MP -MF volume_io/Prog_utils/.deps/files.Tpo -c volume_io/Prog_utils/files.c -o volume_io/Prog_utils/files.o >/dev/null 2>&1 depbase=`echo volume_io/Prog_utils/print.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Prog_utils/print.lo -MD -MP -MF $depbase.Tpo -c -o volume_io/Prog_utils/print.lo volume_io/Prog_utils/print.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Prog_utils/print.lo -MD -MP -MF volume_io/Prog_utils/.deps/print.Tpo -c volume_io/Prog_utils/print.c -fPIC -DPIC -o volume_io/Prog_utils/.libs/print.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Prog_utils/print.lo -MD -MP -MF volume_io/Prog_utils/.deps/print.Tpo -c volume_io/Prog_utils/print.c -o volume_io/Prog_utils/print.o >/dev/null 2>&1 depbase=`echo volume_io/Prog_utils/progress.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Prog_utils/progress.lo -MD -MP -MF $depbase.Tpo -c -o volume_io/Prog_utils/progress.lo volume_io/Prog_utils/progress.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Prog_utils/progress.lo -MD -MP -MF volume_io/Prog_utils/.deps/progress.Tpo -c volume_io/Prog_utils/progress.c -fPIC -DPIC -o volume_io/Prog_utils/.libs/progress.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Prog_utils/progress.lo -MD -MP -MF volume_io/Prog_utils/.deps/progress.Tpo -c volume_io/Prog_utils/progress.c -o volume_io/Prog_utils/progress.o >/dev/null 2>&1 depbase=`echo volume_io/Prog_utils/string.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Prog_utils/string.lo -MD -MP -MF $depbase.Tpo -c -o volume_io/Prog_utils/string.lo volume_io/Prog_utils/string.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Prog_utils/string.lo -MD -MP -MF volume_io/Prog_utils/.deps/string.Tpo -c volume_io/Prog_utils/string.c -fPIC -DPIC -o volume_io/Prog_utils/.libs/string.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Prog_utils/string.lo -MD -MP -MF volume_io/Prog_utils/.deps/string.Tpo -c volume_io/Prog_utils/string.c -o volume_io/Prog_utils/string.o >/dev/null 2>&1 depbase=`echo volume_io/Prog_utils/time.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Prog_utils/time.lo -MD -MP -MF $depbase.Tpo -c -o volume_io/Prog_utils/time.lo volume_io/Prog_utils/time.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Prog_utils/time.lo -MD -MP -MF volume_io/Prog_utils/.deps/time.Tpo -c volume_io/Prog_utils/time.c -fPIC -DPIC -o volume_io/Prog_utils/.libs/time.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Prog_utils/time.lo -MD -MP -MF volume_io/Prog_utils/.deps/time.Tpo -c volume_io/Prog_utils/time.c -o volume_io/Prog_utils/time.o >/dev/null 2>&1 depbase=`echo volume_io/Volumes/evaluate.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Volumes/evaluate.lo -MD -MP -MF $depbase.Tpo -c -o volume_io/Volumes/evaluate.lo volume_io/Volumes/evaluate.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Volumes/evaluate.lo -MD -MP -MF volume_io/Volumes/.deps/evaluate.Tpo -c volume_io/Volumes/evaluate.c -fPIC -DPIC -o volume_io/Volumes/.libs/evaluate.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Volumes/evaluate.lo -MD -MP -MF volume_io/Volumes/.deps/evaluate.Tpo -c volume_io/Volumes/evaluate.c -o volume_io/Volumes/evaluate.o >/dev/null 2>&1 depbase=`echo volume_io/Volumes/get_hyperslab.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Volumes/get_hyperslab.lo -MD -MP -MF $depbase.Tpo -c -o volume_io/Volumes/get_hyperslab.lo volume_io/Volumes/get_hyperslab.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Volumes/get_hyperslab.lo -MD -MP -MF volume_io/Volumes/.deps/get_hyperslab.Tpo -c volume_io/Volumes/get_hyperslab.c -fPIC -DPIC -o volume_io/Volumes/.libs/get_hyperslab.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Volumes/get_hyperslab.lo -MD -MP -MF volume_io/Volumes/.deps/get_hyperslab.Tpo -c volume_io/Volumes/get_hyperslab.c -o volume_io/Volumes/get_hyperslab.o >/dev/null 2>&1 depbase=`echo volume_io/Volumes/input_free.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Volumes/input_free.lo -MD -MP -MF $depbase.Tpo -c -o volume_io/Volumes/input_free.lo volume_io/Volumes/input_free.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Volumes/input_free.lo -MD -MP -MF volume_io/Volumes/.deps/input_free.Tpo -c volume_io/Volumes/input_free.c -fPIC -DPIC -o volume_io/Volumes/.libs/input_free.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Volumes/input_free.lo -MD -MP -MF volume_io/Volumes/.deps/input_free.Tpo -c volume_io/Volumes/input_free.c -o volume_io/Volumes/input_free.o >/dev/null 2>&1 depbase=`echo volume_io/Volumes/input_mnc.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Volumes/input_mnc.lo -MD -MP -MF $depbase.Tpo -c -o volume_io/Volumes/input_mnc.lo volume_io/Volumes/input_mnc.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Volumes/input_mnc.lo -MD -MP -MF volume_io/Volumes/.deps/input_mnc.Tpo -c volume_io/Volumes/input_mnc.c -fPIC -DPIC -o volume_io/Volumes/.libs/input_mnc.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Volumes/input_mnc.lo -MD -MP -MF volume_io/Volumes/.deps/input_mnc.Tpo -c volume_io/Volumes/input_mnc.c -o volume_io/Volumes/input_mnc.o >/dev/null 2>&1 depbase=`echo volume_io/Volumes/input_volume.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Volumes/input_volume.lo -MD -MP -MF $depbase.Tpo -c -o volume_io/Volumes/input_volume.lo volume_io/Volumes/input_volume.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Volumes/input_volume.lo -MD -MP -MF volume_io/Volumes/.deps/input_volume.Tpo -c volume_io/Volumes/input_volume.c -fPIC -DPIC -o volume_io/Volumes/.libs/input_volume.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Volumes/input_volume.lo -MD -MP -MF volume_io/Volumes/.deps/input_volume.Tpo -c volume_io/Volumes/input_volume.c -o volume_io/Volumes/input_volume.o >/dev/null 2>&1 depbase=`echo volume_io/Volumes/multidim_arrays.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Volumes/multidim_arrays.lo -MD -MP -MF $depbase.Tpo -c -o volume_io/Volumes/multidim_arrays.lo volume_io/Volumes/multidim_arrays.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Volumes/multidim_arrays.lo -MD -MP -MF volume_io/Volumes/.deps/multidim_arrays.Tpo -c volume_io/Volumes/multidim_arrays.c -fPIC -DPIC -o volume_io/Volumes/.libs/multidim_arrays.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Volumes/multidim_arrays.lo -MD -MP -MF volume_io/Volumes/.deps/multidim_arrays.Tpo -c volume_io/Volumes/multidim_arrays.c -o volume_io/Volumes/multidim_arrays.o >/dev/null 2>&1 depbase=`echo volume_io/Volumes/output_mnc.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Volumes/output_mnc.lo -MD -MP -MF $depbase.Tpo -c -o volume_io/Volumes/output_mnc.lo volume_io/Volumes/output_mnc.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Volumes/output_mnc.lo -MD -MP -MF volume_io/Volumes/.deps/output_mnc.Tpo -c volume_io/Volumes/output_mnc.c -fPIC -DPIC -o volume_io/Volumes/.libs/output_mnc.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Volumes/output_mnc.lo -MD -MP -MF volume_io/Volumes/.deps/output_mnc.Tpo -c volume_io/Volumes/output_mnc.c -o volume_io/Volumes/output_mnc.o >/dev/null 2>&1 depbase=`echo volume_io/Volumes/output_volume.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Volumes/output_volume.lo -MD -MP -MF $depbase.Tpo -c -o volume_io/Volumes/output_volume.lo volume_io/Volumes/output_volume.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Volumes/output_volume.lo -MD -MP -MF volume_io/Volumes/.deps/output_volume.Tpo -c volume_io/Volumes/output_volume.c -fPIC -DPIC -o volume_io/Volumes/.libs/output_volume.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Volumes/output_volume.lo -MD -MP -MF volume_io/Volumes/.deps/output_volume.Tpo -c volume_io/Volumes/output_volume.c -o volume_io/Volumes/output_volume.o >/dev/null 2>&1 depbase=`echo volume_io/Volumes/set_hyperslab.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Volumes/set_hyperslab.lo -MD -MP -MF $depbase.Tpo -c -o volume_io/Volumes/set_hyperslab.lo volume_io/Volumes/set_hyperslab.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Volumes/set_hyperslab.lo -MD -MP -MF volume_io/Volumes/.deps/set_hyperslab.Tpo -c volume_io/Volumes/set_hyperslab.c -fPIC -DPIC -o volume_io/Volumes/.libs/set_hyperslab.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Volumes/set_hyperslab.lo -MD -MP -MF volume_io/Volumes/.deps/set_hyperslab.Tpo -c volume_io/Volumes/set_hyperslab.c -o volume_io/Volumes/set_hyperslab.o >/dev/null 2>&1 depbase=`echo volume_io/Volumes/volume_cache.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Volumes/volume_cache.lo -MD -MP -MF $depbase.Tpo -c -o volume_io/Volumes/volume_cache.lo volume_io/Volumes/volume_cache.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Volumes/volume_cache.lo -MD -MP -MF volume_io/Volumes/.deps/volume_cache.Tpo -c volume_io/Volumes/volume_cache.c -fPIC -DPIC -o volume_io/Volumes/.libs/volume_cache.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Volumes/volume_cache.lo -MD -MP -MF volume_io/Volumes/.deps/volume_cache.Tpo -c volume_io/Volumes/volume_cache.c -o volume_io/Volumes/volume_cache.o >/dev/null 2>&1 depbase=`echo volume_io/Volumes/volumes.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Volumes/volumes.lo -MD -MP -MF $depbase.Tpo -c -o volume_io/Volumes/volumes.lo volume_io/Volumes/volumes.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Volumes/volumes.lo -MD -MP -MF volume_io/Volumes/.deps/volumes.Tpo -c volume_io/Volumes/volumes.c -fPIC -DPIC -o volume_io/Volumes/.libs/volumes.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT volume_io/Volumes/volumes.lo -MD -MP -MF volume_io/Volumes/.deps/volumes.Tpo -c volume_io/Volumes/volumes.c -o volume_io/Volumes/volumes.o >/dev/null 2>&1 /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -version-info 3:0:0 -L/usr/local/lib -o libvolume_io2.la -rpath /usr/local/lib volume_io/Geometry/colour.lo volume_io/Geometry/colour_def.lo volume_io/Geometry/gaussian.lo volume_io/Geometry/inverse.lo volume_io/Geometry/newton.lo volume_io/Geometry/points.lo volume_io/Geometry/splines.lo volume_io/Geometry/tensors.lo volume_io/Geometry/transforms.lo volume_io/MNI_formats/gen_xf_io.lo volume_io/MNI_formats/gen_xfs.lo volume_io/MNI_formats/grid_transforms.lo volume_io/MNI_formats/mni_io.lo volume_io/MNI_formats/tag_points.lo volume_io/MNI_formats/thin_plate_spline.lo volume_io/Prog_utils/alloc.lo volume_io/Prog_utils/alloc_check.lo volume_io/Prog_utils/arrays.lo volume_io/Prog_utils/files.lo volume_io/Prog_utils/print.lo volume_io/Prog_utils/progress.lo volume_io/Prog_utils/string.lo volume_io/Prog_utils/time.lo volume_io/Volumes/evaluate.lo volume_io/Volumes/get_hyperslab.lo volume_io/Volumes/input_free.lo volume_io/Volumes/input_mnc.lo volume_io/Volumes/input_volume.lo volume_io/Volumes/multidim_arrays.lo volume_io/Volumes/output_mnc.lo volume_io/Volumes/output_volume.lo volume_io/Volumes/set_hyperslab.lo volume_io/Volumes/volume_cache.lo volume_io/Volumes/volumes.lo -lhdf5 -lz -lnetcdf -lm libtool: link: cc -shared -fPIC -DPIC volume_io/Geometry/.libs/colour.o volume_io/Geometry/.libs/colour_def.o volume_io/Geometry/.libs/gaussian.o volume_io/Geometry/.libs/inverse.o volume_io/Geometry/.libs/newton.o volume_io/Geometry/.libs/points.o volume_io/Geometry/.libs/splines.o volume_io/Geometry/.libs/tensors.o volume_io/Geometry/.libs/transforms.o volume_io/MNI_formats/.libs/gen_xf_io.o volume_io/MNI_formats/.libs/gen_xfs.o volume_io/MNI_formats/.libs/grid_transforms.o volume_io/MNI_formats/.libs/mni_io.o volume_io/MNI_formats/.libs/tag_points.o volume_io/MNI_formats/.libs/thin_plate_spline.o volume_io/Prog_utils/.libs/alloc.o volume_io/Prog_utils/.libs/alloc_check.o volume_io/Prog_utils/.libs/arrays.o volume_io/Prog_utils/.libs/files.o volume_io/Prog_utils/.libs/print.o volume_io/Prog_utils/.libs/progress.o volume_io/Prog_utils/.libs/string.o volume_io/Prog_utils/.libs/time.o volume_io/Volumes/.libs/evaluate.o volume_io/Volumes/.libs/get_hyperslab.o volume_io/Volumes/.libs/input_free.o volume_io/Volumes/.libs/input_mnc.o volume_io/Volumes/.libs/input_volume.o volume_io/Volumes/.libs/multidim_arrays.o volume_io/Volumes/.libs/output_mnc.o volume_io/Volumes/.libs/output_volume.o volume_io/Volumes/.libs/set_hyperslab.o volume_io/Volumes/.libs/volume_cache.o volume_io/Volumes/.libs/volumes.o -L/usr/local/lib -lhdf5 -lz -lnetcdf -lm -O2 -Wl,-soname -Wl,libvolume_io2.so.3 -o .libs/libvolume_io2.so.3.0.0 libtool: link: (cd ".libs" && rm -f "libvolume_io2.so.3" && ln -s "libvolume_io2.so.3.0.0" "libvolume_io2.so.3") libtool: link: (cd ".libs" && rm -f "libvolume_io2.so" && ln -s "libvolume_io2.so.3.0.0" "libvolume_io2.so") libtool: link: ar cr .libs/libvolume_io2.a volume_io/Geometry/colour.o volume_io/Geometry/colour_def.o volume_io/Geometry/gaussian.o volume_io/Geometry/inverse.o volume_io/Geometry/newton.o volume_io/Geometry/points.o volume_io/Geometry/splines.o volume_io/Geometry/tensors.o volume_io/Geometry/transforms.o volume_io/MNI_formats/gen_xf_io.o volume_io/MNI_formats/gen_xfs.o volume_io/MNI_formats/grid_transforms.o volume_io/MNI_formats/mni_io.o volume_io/MNI_formats/tag_points.o volume_io/MNI_formats/thin_plate_spline.o volume_io/Prog_utils/alloc.o volume_io/Prog_utils/alloc_check.o volume_io/Prog_utils/arrays.o volume_io/Prog_utils/files.o volume_io/Prog_utils/print.o volume_io/Prog_utils/progress.o volume_io/Prog_utils/string.o volume_io/Prog_utils/time.o volume_io/Volumes/evaluate.o volume_io/Volumes/get_hyperslab.o volume_io/Volumes/input_free.o volume_io/Volumes/input_mnc.o volume_io/Volumes/input_volume.o volume_io/Volumes/multidim_arrays.o volume_io/Volumes/output_mnc.o volume_io/Volumes/output_volume.o volume_io/Volumes/set_hyperslab.o volume_io/Volumes/volume_cache.o volume_io/Volumes/volumes.o libtool: link: ranlib .libs/libvolume_io2.a libtool: link: ( cd ".libs" && rm -f "libvolume_io2.la" && ln -s "../libvolume_io2.la" "libvolume_io2.la" ) depbase=`echo libsrc/ParseArgv.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/ParseArgv.lo -MD -MP -MF $depbase.Tpo -c -o libsrc/ParseArgv.lo libsrc/ParseArgv.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/ParseArgv.lo -MD -MP -MF libsrc/.deps/ParseArgv.Tpo -c libsrc/ParseArgv.c -fPIC -DPIC -o libsrc/.libs/ParseArgv.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/ParseArgv.lo -MD -MP -MF libsrc/.deps/ParseArgv.Tpo -c libsrc/ParseArgv.c -o libsrc/ParseArgv.o >/dev/null 2>&1 depbase=`echo libsrc/read_file_names.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/read_file_names.lo -MD -MP -MF $depbase.Tpo -c -o libsrc/read_file_names.lo libsrc/read_file_names.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/read_file_names.lo -MD -MP -MF libsrc/.deps/read_file_names.Tpo -c libsrc/read_file_names.c -fPIC -DPIC -o libsrc/.libs/read_file_names.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/read_file_names.lo -MD -MP -MF libsrc/.deps/read_file_names.Tpo -c libsrc/read_file_names.c -o libsrc/read_file_names.o >/dev/null 2>&1 depbase=`echo libsrc/dim_conversion.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/dim_conversion.lo -MD -MP -MF $depbase.Tpo -c -o libsrc/dim_conversion.lo libsrc/dim_conversion.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/dim_conversion.lo -MD -MP -MF libsrc/.deps/dim_conversion.Tpo -c libsrc/dim_conversion.c -fPIC -DPIC -o libsrc/.libs/dim_conversion.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/dim_conversion.lo -MD -MP -MF libsrc/.deps/dim_conversion.Tpo -c libsrc/dim_conversion.c -o libsrc/dim_conversion.o >/dev/null 2>&1 depbase=`echo libsrc/image_conversion.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/image_conversion.lo -MD -MP -MF $depbase.Tpo -c -o libsrc/image_conversion.lo libsrc/image_conversion.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/image_conversion.lo -MD -MP -MF libsrc/.deps/image_conversion.Tpo -c libsrc/image_conversion.c -fPIC -DPIC -o libsrc/.libs/image_conversion.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/image_conversion.lo -MD -MP -MF libsrc/.deps/image_conversion.Tpo -c libsrc/image_conversion.c -o libsrc/image_conversion.o >/dev/null 2>&1 depbase=`echo libsrc/minc_convenience.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/minc_convenience.lo -MD -MP -MF $depbase.Tpo -c -o libsrc/minc_convenience.lo libsrc/minc_convenience.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/minc_convenience.lo -MD -MP -MF libsrc/.deps/minc_convenience.Tpo -c libsrc/minc_convenience.c -fPIC -DPIC -o libsrc/.libs/minc_convenience.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/minc_convenience.lo -MD -MP -MF libsrc/.deps/minc_convenience.Tpo -c libsrc/minc_convenience.c -o libsrc/minc_convenience.o >/dev/null 2>&1 depbase=`echo libsrc/minc_error.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/minc_error.lo -MD -MP -MF $depbase.Tpo -c -o libsrc/minc_error.lo libsrc/minc_error.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/minc_error.lo -MD -MP -MF libsrc/.deps/minc_error.Tpo -c libsrc/minc_error.c -fPIC -DPIC -o libsrc/.libs/minc_error.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/minc_error.lo -MD -MP -MF libsrc/.deps/minc_error.Tpo -c libsrc/minc_error.c -o libsrc/minc_error.o >/dev/null 2>&1 depbase=`echo libsrc/nd_loop.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/nd_loop.lo -MD -MP -MF $depbase.Tpo -c -o libsrc/nd_loop.lo libsrc/nd_loop.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/nd_loop.lo -MD -MP -MF libsrc/.deps/nd_loop.Tpo -c libsrc/nd_loop.c -fPIC -DPIC -o libsrc/.libs/nd_loop.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/nd_loop.lo -MD -MP -MF libsrc/.deps/nd_loop.Tpo -c libsrc/nd_loop.c -o libsrc/nd_loop.o >/dev/null 2>&1 depbase=`echo libsrc/netcdf_convenience.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/netcdf_convenience.lo -MD -MP -MF $depbase.Tpo -c -o libsrc/netcdf_convenience.lo libsrc/netcdf_convenience.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/netcdf_convenience.lo -MD -MP -MF libsrc/.deps/netcdf_convenience.Tpo -c libsrc/netcdf_convenience.c -fPIC -DPIC -o libsrc/.libs/netcdf_convenience.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/netcdf_convenience.lo -MD -MP -MF libsrc/.deps/netcdf_convenience.Tpo -c libsrc/netcdf_convenience.c -o libsrc/netcdf_convenience.o >/dev/null 2>&1 depbase=`echo libsrc/time_stamp.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/time_stamp.lo -MD -MP -MF $depbase.Tpo -c -o libsrc/time_stamp.lo libsrc/time_stamp.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/time_stamp.lo -MD -MP -MF libsrc/.deps/time_stamp.Tpo -c libsrc/time_stamp.c -fPIC -DPIC -o libsrc/.libs/time_stamp.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/time_stamp.lo -MD -MP -MF libsrc/.deps/time_stamp.Tpo -c libsrc/time_stamp.c -o libsrc/time_stamp.o >/dev/null 2>&1 depbase=`echo libsrc/value_conversion.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/value_conversion.lo -MD -MP -MF $depbase.Tpo -c -o libsrc/value_conversion.lo libsrc/value_conversion.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/value_conversion.lo -MD -MP -MF libsrc/.deps/value_conversion.Tpo -c libsrc/value_conversion.c -fPIC -DPIC -o libsrc/.libs/value_conversion.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/value_conversion.lo -MD -MP -MF libsrc/.deps/value_conversion.Tpo -c libsrc/value_conversion.c -o libsrc/value_conversion.o >/dev/null 2>&1 depbase=`echo libsrc/voxel_loop.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/voxel_loop.lo -MD -MP -MF $depbase.Tpo -c -o libsrc/voxel_loop.lo libsrc/voxel_loop.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/voxel_loop.lo -MD -MP -MF libsrc/.deps/voxel_loop.Tpo -c libsrc/voxel_loop.c -fPIC -DPIC -o libsrc/.libs/voxel_loop.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/voxel_loop.lo -MD -MP -MF libsrc/.deps/voxel_loop.Tpo -c libsrc/voxel_loop.c -o libsrc/voxel_loop.o >/dev/null 2>&1 depbase=`echo libsrc/hdf_convenience.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/hdf_convenience.lo -MD -MP -MF $depbase.Tpo -c -o libsrc/hdf_convenience.lo libsrc/hdf_convenience.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/hdf_convenience.lo -MD -MP -MF libsrc/.deps/hdf_convenience.Tpo -c libsrc/hdf_convenience.c -fPIC -DPIC -o libsrc/.libs/hdf_convenience.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/hdf_convenience.lo -MD -MP -MF libsrc/.deps/hdf_convenience.Tpo -c libsrc/hdf_convenience.c -o libsrc/hdf_convenience.o >/dev/null 2>&1 depbase=`echo libsrc/minc_compat.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/minc_compat.lo -MD -MP -MF $depbase.Tpo -c -o libsrc/minc_compat.lo libsrc/minc_compat.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/minc_compat.lo -MD -MP -MF libsrc/.deps/minc_compat.Tpo -c libsrc/minc_compat.c -fPIC -DPIC -o libsrc/.libs/minc_compat.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/minc_compat.lo -MD -MP -MF libsrc/.deps/minc_compat.Tpo -c libsrc/minc_compat.c -o libsrc/minc_compat.o >/dev/null 2>&1 depbase=`echo libsrc/minc_simple.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/minc_simple.lo -MD -MP -MF $depbase.Tpo -c -o libsrc/minc_simple.lo libsrc/minc_simple.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/minc_simple.lo -MD -MP -MF libsrc/.deps/minc_simple.Tpo -c libsrc/minc_simple.c -fPIC -DPIC -o libsrc/.libs/minc_simple.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc/minc_simple.lo -MD -MP -MF libsrc/.deps/minc_simple.Tpo -c libsrc/minc_simple.c -o libsrc/minc_simple.o >/dev/null 2>&1 depbase=`echo libsrc2/convert.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/convert.lo -MD -MP -MF $depbase.Tpo -c -o libsrc2/convert.lo libsrc2/convert.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/convert.lo -MD -MP -MF libsrc2/.deps/convert.Tpo -c libsrc2/convert.c -fPIC -DPIC -o libsrc2/.libs/convert.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/convert.lo -MD -MP -MF libsrc2/.deps/convert.Tpo -c libsrc2/convert.c -o libsrc2/convert.o >/dev/null 2>&1 depbase=`echo libsrc2/datatype.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/datatype.lo -MD -MP -MF $depbase.Tpo -c -o libsrc2/datatype.lo libsrc2/datatype.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/datatype.lo -MD -MP -MF libsrc2/.deps/datatype.Tpo -c libsrc2/datatype.c -fPIC -DPIC -o libsrc2/.libs/datatype.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/datatype.lo -MD -MP -MF libsrc2/.deps/datatype.Tpo -c libsrc2/datatype.c -o libsrc2/datatype.o >/dev/null 2>&1 depbase=`echo libsrc2/dimension.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/dimension.lo -MD -MP -MF $depbase.Tpo -c -o libsrc2/dimension.lo libsrc2/dimension.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/dimension.lo -MD -MP -MF libsrc2/.deps/dimension.Tpo -c libsrc2/dimension.c -fPIC -DPIC -o libsrc2/.libs/dimension.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/dimension.lo -MD -MP -MF libsrc2/.deps/dimension.Tpo -c libsrc2/dimension.c -o libsrc2/dimension.o >/dev/null 2>&1 depbase=`echo libsrc2/free.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/free.lo -MD -MP -MF $depbase.Tpo -c -o libsrc2/free.lo libsrc2/free.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/free.lo -MD -MP -MF libsrc2/.deps/free.Tpo -c libsrc2/free.c -fPIC -DPIC -o libsrc2/.libs/free.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/free.lo -MD -MP -MF libsrc2/.deps/free.Tpo -c libsrc2/free.c -o libsrc2/free.o >/dev/null 2>&1 depbase=`echo libsrc2/grpattr.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/grpattr.lo -MD -MP -MF $depbase.Tpo -c -o libsrc2/grpattr.lo libsrc2/grpattr.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/grpattr.lo -MD -MP -MF libsrc2/.deps/grpattr.Tpo -c libsrc2/grpattr.c -fPIC -DPIC -o libsrc2/.libs/grpattr.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/grpattr.lo -MD -MP -MF libsrc2/.deps/grpattr.Tpo -c libsrc2/grpattr.c -o libsrc2/grpattr.o >/dev/null 2>&1 depbase=`echo libsrc2/hyper.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/hyper.lo -MD -MP -MF $depbase.Tpo -c -o libsrc2/hyper.lo libsrc2/hyper.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/hyper.lo -MD -MP -MF libsrc2/.deps/hyper.Tpo -c libsrc2/hyper.c -fPIC -DPIC -o libsrc2/.libs/hyper.o libsrc2/hyper.c: In function 'miget_real_value_hyperslab': libsrc2/hyper.c:769:11: warning: 'return' with no value, in function returning non-void return; ^~~~~~ libsrc2/hyper.c:720:1: note: declared here miget_real_value_hyperslab(mihandle_t volume, ^~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/hyper.lo -MD -MP -MF libsrc2/.deps/hyper.Tpo -c libsrc2/hyper.c -o libsrc2/hyper.o >/dev/null 2>&1 depbase=`echo libsrc2/label.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/label.lo -MD -MP -MF $depbase.Tpo -c -o libsrc2/label.lo libsrc2/label.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/label.lo -MD -MP -MF libsrc2/.deps/label.Tpo -c libsrc2/label.c -fPIC -DPIC -o libsrc2/.libs/label.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/label.lo -MD -MP -MF libsrc2/.deps/label.Tpo -c libsrc2/label.c -o libsrc2/label.o >/dev/null 2>&1 depbase=`echo libsrc2/m2util.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/m2util.lo -MD -MP -MF $depbase.Tpo -c -o libsrc2/m2util.lo libsrc2/m2util.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/m2util.lo -MD -MP -MF libsrc2/.deps/m2util.Tpo -c libsrc2/m2util.c -fPIC -DPIC -o libsrc2/.libs/m2util.o libsrc2/m2util.c: In function 'minc_update_thumbnail': libsrc2/m2util.c:1627:32: warning: passing argument 4 of 'H5Sselect_elements' from incompatible pointer type [-Wincompatible-pointer-types] (const H5_START_T **) &start[0]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/H5Ppublic.h:33, from /usr/local/include/hdf5.h:35, from libsrc2/m2util.c:8: /usr/local/include/H5Spublic.h:1079:100: note: expected 'const hsize_t *' {aka 'const long long unsigned int *'} but argument is of type 'const hsize_t **' {aka 'const long long unsigned int **'} H5_DLL herr_t H5Sselect_elements(hid_t space_id, H5S_seloper_t op, size_t num_elem, const hsize_t *coord); ~~~~~~~~~~~~~~~^~~~~ libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/m2util.lo -MD -MP -MF libsrc2/.deps/m2util.Tpo -c libsrc2/m2util.c -o libsrc2/m2util.o >/dev/null 2>&1 depbase=`echo libsrc2/record.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/record.lo -MD -MP -MF $depbase.Tpo -c -o libsrc2/record.lo libsrc2/record.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/record.lo -MD -MP -MF libsrc2/.deps/record.Tpo -c libsrc2/record.c -fPIC -DPIC -o libsrc2/.libs/record.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/record.lo -MD -MP -MF libsrc2/.deps/record.Tpo -c libsrc2/record.c -o libsrc2/record.o >/dev/null 2>&1 depbase=`echo libsrc2/slice.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/slice.lo -MD -MP -MF $depbase.Tpo -c -o libsrc2/slice.lo libsrc2/slice.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/slice.lo -MD -MP -MF libsrc2/.deps/slice.Tpo -c libsrc2/slice.c -fPIC -DPIC -o libsrc2/.libs/slice.o libsrc2/slice.c: In function 'mirw_slice_minmax': libsrc2/slice.c:87:5: warning: passing argument 4 of 'H5Sselect_elements' from incompatible pointer type [-Wincompatible-pointer-types] (const hsize_t **) &hdf_start); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/include/H5Ppublic.h:33, from /usr/local/include/hdf5.h:35, from libsrc2/slice.c:18: /usr/local/include/H5Spublic.h:1079:100: note: expected 'const hsize_t *' {aka 'const long long unsigned int *'} but argument is of type 'const hsize_t **' {aka 'const long long unsigned int **'} H5_DLL herr_t H5Sselect_elements(hid_t space_id, H5S_seloper_t op, size_t num_elem, const hsize_t *coord); ~~~~~~~~~~~~~~~^~~~~ libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/slice.lo -MD -MP -MF libsrc2/.deps/slice.Tpo -c libsrc2/slice.c -o libsrc2/slice.o >/dev/null 2>&1 depbase=`echo libsrc2/valid.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/valid.lo -MD -MP -MF $depbase.Tpo -c -o libsrc2/valid.lo libsrc2/valid.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/valid.lo -MD -MP -MF libsrc2/.deps/valid.Tpo -c libsrc2/valid.c -fPIC -DPIC -o libsrc2/.libs/valid.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/valid.lo -MD -MP -MF libsrc2/.deps/valid.Tpo -c libsrc2/valid.c -o libsrc2/valid.o >/dev/null 2>&1 depbase=`echo libsrc2/volprops.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/volprops.lo -MD -MP -MF $depbase.Tpo -c -o libsrc2/volprops.lo libsrc2/volprops.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/volprops.lo -MD -MP -MF libsrc2/.deps/volprops.Tpo -c libsrc2/volprops.c -fPIC -DPIC -o libsrc2/.libs/volprops.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/volprops.lo -MD -MP -MF libsrc2/.deps/volprops.Tpo -c libsrc2/volprops.c -o libsrc2/volprops.o >/dev/null 2>&1 depbase=`echo libsrc2/volume.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/volume.lo -MD -MP -MF $depbase.Tpo -c -o libsrc2/volume.lo libsrc2/volume.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/volume.lo -MD -MP -MF libsrc2/.deps/volume.Tpo -c libsrc2/volume.c -fPIC -DPIC -o libsrc2/.libs/volume.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT libsrc2/volume.lo -MD -MP -MF libsrc2/.deps/volume.Tpo -c libsrc2/volume.c -o libsrc2/volume.o >/dev/null 2>&1 /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -version-info 3:0:0 -L/usr/local/lib -o libminc2.la -rpath /usr/local/lib libsrc/ParseArgv.lo libsrc/read_file_names.lo libsrc/dim_conversion.lo libsrc/image_conversion.lo libsrc/minc_convenience.lo libsrc/minc_error.lo libsrc/nd_loop.lo libsrc/netcdf_convenience.lo libsrc/time_stamp.lo libsrc/value_conversion.lo libsrc/voxel_loop.lo libsrc/hdf_convenience.lo libsrc/minc_compat.lo libsrc/minc_simple.lo libsrc2/convert.lo libsrc2/datatype.lo libsrc2/dimension.lo libsrc2/free.lo libsrc2/grpattr.lo libsrc2/hyper.lo libsrc2/label.lo libsrc2/m2util.lo libsrc2/record.lo libsrc2/slice.lo libsrc2/valid.lo libsrc2/volprops.lo libsrc2/volume.lo -lhdf5 -lz -lnetcdf -lm libtool: link: cc -shared -fPIC -DPIC libsrc/.libs/ParseArgv.o libsrc/.libs/read_file_names.o libsrc/.libs/dim_conversion.o libsrc/.libs/image_conversion.o libsrc/.libs/minc_convenience.o libsrc/.libs/minc_error.o libsrc/.libs/nd_loop.o libsrc/.libs/netcdf_convenience.o libsrc/.libs/time_stamp.o libsrc/.libs/value_conversion.o libsrc/.libs/voxel_loop.o libsrc/.libs/hdf_convenience.o libsrc/.libs/minc_compat.o libsrc/.libs/minc_simple.o libsrc2/.libs/convert.o libsrc2/.libs/datatype.o libsrc2/.libs/dimension.o libsrc2/.libs/free.o libsrc2/.libs/grpattr.o libsrc2/.libs/hyper.o libsrc2/.libs/label.o libsrc2/.libs/m2util.o libsrc2/.libs/record.o libsrc2/.libs/slice.o libsrc2/.libs/valid.o libsrc2/.libs/volprops.o libsrc2/.libs/volume.o -L/usr/local/lib -lhdf5 -lz -lnetcdf -lm -O2 -Wl,-soname -Wl,libminc2.so.3 -o .libs/libminc2.so.3.0.0 libtool: link: (cd ".libs" && rm -f "libminc2.so.3" && ln -s "libminc2.so.3.0.0" "libminc2.so.3") libtool: link: (cd ".libs" && rm -f "libminc2.so" && ln -s "libminc2.so.3.0.0" "libminc2.so") libtool: link: ar cr .libs/libminc2.a libsrc/ParseArgv.o libsrc/read_file_names.o libsrc/dim_conversion.o libsrc/image_conversion.o libsrc/minc_convenience.o libsrc/minc_error.o libsrc/nd_loop.o libsrc/netcdf_convenience.o libsrc/time_stamp.o libsrc/value_conversion.o libsrc/voxel_loop.o libsrc/hdf_convenience.o libsrc/minc_compat.o libsrc/minc_simple.o libsrc2/convert.o libsrc2/datatype.o libsrc2/dimension.o libsrc2/free.o libsrc2/grpattr.o libsrc2/hyper.o libsrc2/label.o libsrc2/m2util.o libsrc2/record.o libsrc2/slice.o libsrc2/valid.o libsrc2/volprops.o libsrc2/volume.o libtool: link: ranlib .libs/libminc2.a libtool: link: ( cd ".libs" && rm -f "libminc2.la" && ln -s "../libminc2.la" "libminc2.la" ) /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o voxeltoworld progs/coordinates/voxeltoworld.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/voxeltoworld progs/coordinates/voxeltoworld.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo progs/coordinates/worldtovoxel.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/coordinates/worldtovoxel.o -MD -MP -MF $depbase.Tpo -c -o progs/coordinates/worldtovoxel.o progs/coordinates/worldtovoxel.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o worldtovoxel progs/coordinates/worldtovoxel.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/worldtovoxel progs/coordinates/worldtovoxel.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo progs/minc_modify_header/minc_modify_header.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/minc_modify_header/minc_modify_header.o -MD -MP -MF $depbase.Tpo -c -o progs/minc_modify_header/minc_modify_header.o progs/minc_modify_header/minc_modify_header.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o minc_modify_header progs/minc_modify_header/minc_modify_header.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/minc_modify_header progs/minc_modify_header/minc_modify_header.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo progs/mincaverage/mincaverage.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/mincaverage/mincaverage.o -MD -MP -MF $depbase.Tpo -c -o progs/mincaverage/mincaverage.o progs/mincaverage/mincaverage.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o mincaverage progs/mincaverage/mincaverage.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/mincaverage progs/mincaverage/mincaverage.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo progs/mincblob/mincblob.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/mincblob/mincblob.o -MD -MP -MF $depbase.Tpo -c -o progs/mincblob/mincblob.o progs/mincblob/mincblob.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o mincblob progs/mincblob/mincblob.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/mincblob progs/mincblob/mincblob.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -Iprogs/minccalc -I./progs/minccalc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/minccalc/minccalc-minccalc.o -MD -MP -MF progs/minccalc/.deps/minccalc-minccalc.Tpo -c -o progs/minccalc/minccalc-minccalc.o `test -f 'progs/minccalc/minccalc.c' || echo './'`progs/minccalc/minccalc.c mv -f progs/minccalc/.deps/minccalc-minccalc.Tpo progs/minccalc/.deps/minccalc-minccalc.Po /bin/sh ./ac_config_aux/ylwrap progs/minccalc/gram.y y.tab.c progs/minccalc/gram.c y.tab.h `echo progs/minccalc/gram.c | sed -e s/cc$/hh/ -e s/cpp$/hpp/ -e s/cxx$/hxx/ -e s/c++$/h++/ -e s/c$/h/` y.output progs/minccalc/gram.output -- bison -y -d --debug /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:28.16-20: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000000;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 28 | %type IDENT | ^~~~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:29.16-19: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000001;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 29 | %type REAL | ^~~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:30.16-17: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000002;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 30 | %type IN TO AVG SUM PROD LET NEG LEN IF ELSE FOR | ^~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:30.19-20: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000003;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 30 | %type IN TO AVG SUM PROD LET NEG LEN IF ELSE FOR | ^~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:30.22-24: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000004;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 30 | %type IN TO AVG SUM PROD LET NEG LEN IF ELSE FOR | ^~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:30.26-28: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000005;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 30 | %type IN TO AVG SUM PROD LET NEG LEN IF ELSE FOR | ^~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:30.30-33: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000006;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 30 | %type IN TO AVG SUM PROD LET NEG LEN IF ELSE FOR | ^~~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:30.35-37: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000007;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 30 | %type IN TO AVG SUM PROD LET NEG LEN IF ELSE FOR | ^~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:30.39-41: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000008;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 30 | %type IN TO AVG SUM PROD LET NEG LEN IF ELSE FOR | ^~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:30.43-45: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000009;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 30 | %type IN TO AVG SUM PROD LET NEG LEN IF ELSE FOR | ^~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:30.47-48: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae0000000a;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 30 | %type IN TO AVG SUM PROD LET NEG LEN IF ELSE FOR | ^~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:30.50-53: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae0000000b;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 30 | %type IN TO AVG SUM PROD LET NEG LEN IF ELSE FOR | ^~~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:30.55-57: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae0000000c;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 30 | %type IN TO AVG SUM PROD LET NEG LEN IF ELSE FOR | ^~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:31.16-20: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae0000000d;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 31 | %type ISNAN SQRT ABS MAX MIN IMAX IMIN EXP LOG SIN COS TAN A... | ^~~~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:31.22-25: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae0000000e;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 31 | %type ISNAN SQRT ABS MAX MIN IMAX IMIN EXP LOG SIN COS TAN A... | ^~~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:31.27-29: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae0000000f;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 31 | %type ISNAN SQRT ABS MAX MIN IMAX IMIN EXP LOG SIN COS TAN A... | ^~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:31.31-33: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000010;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 31 | %type ISNAN SQRT ABS MAX MIN IMAX IMIN EXP LOG SIN COS TAN A... | ^~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:31.35-37: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000011;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 31 | %type ISNAN SQRT ABS MAX MIN IMAX IMIN EXP LOG SIN COS TAN A... | ^~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:31.39-42: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000012;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 31 | %type ISNAN SQRT ABS MAX MIN IMAX IMIN EXP LOG SIN COS TAN A... | ^~~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:31.44-47: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000013;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 31 | %type ISNAN SQRT ABS MAX MIN IMAX IMIN EXP LOG SIN COS TAN A... | ^~~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:31.49-51: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000014;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 31 | %type ISNAN SQRT ABS MAX MIN IMAX IMIN EXP LOG SIN COS TAN A... | ^~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:31.53-55: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000015;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 31 | %type ISNAN SQRT ABS MAX MIN IMAX IMIN EXP LOG SIN COS TAN A... | ^~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:31.57-59: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000016;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 31 | %type ISNAN SQRT ABS MAX MIN IMAX IMIN EXP LOG SIN COS TAN A... | ^~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:31.61-63: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000017;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 31 | %type ISNAN SQRT ABS MAX MIN IMAX IMIN EXP LOG SIN COS TAN A... | ^~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:31.65-67: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000018;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 31 | %type ISNAN SQRT ABS MAX MIN IMAX IMIN EXP LOG SIN COS TAN A... | ^~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:31.69-72: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000019;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 31 | %type ISNAN SQRT ABS MAX MIN IMAX IMIN EXP LOG SIN COS TAN A... | ^ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:31.74-77: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae0000001a;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 31 | ...TAN ASIN ACOS ATAN | ^~~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:31.79-82: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae0000001b;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 31 | ...SIN ACOS ATAN | ^~~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:32.16-20: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae0000001c;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 32 | %type CLAMP SEGMENT | ^~~~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:32.22-28: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae0000001d;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 32 | %type CLAMP SEGMENT | ^~~~~~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:33.16-18: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae0000001e;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 33 | %type NOT LT LE GT GE EQ NE AND OR | ^~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:33.20-21: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae0000001f;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 33 | %type NOT LT LE GT GE EQ NE AND OR | ^~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:33.23-24: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000020;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 33 | %type NOT LT LE GT GE EQ NE AND OR | ^~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:33.26-27: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000021;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 33 | %type NOT LT LE GT GE EQ NE AND OR | ^~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:33.29-30: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000022;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 33 | %type NOT LT LE GT GE EQ NE AND OR | ^~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:33.32-33: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000023;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 33 | %type NOT LT LE GT GE EQ NE AND OR | ^~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:33.35-36: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000024;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 33 | %type NOT LT LE GT GE EQ NE AND OR | ^~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:33.38-40: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000025;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 33 | %type NOT LT LE GT GE EQ NE AND OR | ^~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:33.42-43: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000026;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 33 | %type NOT LT LE GT GE EQ NE AND OR | ^~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:34.16-18: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000027;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 34 | %type '+' '-' '*' '/' '(' ')' '[' ']' '.' '=' '^' '{' '}' ',... | ^~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:34.20-22: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000028;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 34 | %type '+' '-' '*' '/' '(' ')' '[' ']' '.' '=' '^' '{' '}' ',... | ^~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:34.24-26: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000029;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 34 | %type '+' '-' '*' '/' '(' ')' '[' ']' '.' '=' '^' '{' '}' ',... | ^~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:34.28-30: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae0000002a;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 34 | %type '+' '-' '*' '/' '(' ')' '[' ']' '.' '=' '^' '{' '}' ',... | ^~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:34.32-34: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae0000002b;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 34 | %type '+' '-' '*' '/' '(' ')' '[' ']' '.' '=' '^' '{' '}' ',... | ^~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:34.36-38: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae0000002c;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 34 | %type '+' '-' '*' '/' '(' ')' '[' ']' '.' '=' '^' '{' '}' ',... | ^~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:34.40-42: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae0000002d;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 34 | %type '+' '-' '*' '/' '(' ')' '[' ']' '.' '=' '^' '{' '}' ',... | ^~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:34.44-46: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae0000002e;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 34 | %type '+' '-' '*' '/' '(' ')' '[' ']' '.' '=' '^' '{' '}' ',... | ^~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:34.48-50: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae0000002f;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 34 | %type '+' '-' '*' '/' '(' ')' '[' ']' '.' '=' '^' '{' '}' ',... | ^~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:34.52-54: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000030;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 34 | %type '+' '-' '*' '/' '(' ')' '[' ']' '.' '=' '^' '{' '}' ',... | ^~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:34.56-58: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000031;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 34 | %type '+' '-' '*' '/' '(' ')' '[' ']' '.' '=' '^' '{' '}' ',... | ^~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:34.60-62: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000032;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 34 | %type '+' '-' '*' '/' '(' ')' '[' ']' '.' '=' '^' '{' '}' ',... | ^~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:34.64-66: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000033;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 34 | %type '+' '-' '*' '/' '(' ')' '[' ']' '.' '=' '^' '{' '}' ',... | ^~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:34.68-70: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000034;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 34 | %type '+' '-' '*' '/' '(' ')' '[' ']' '.' '=' '^' '{' '}' ',... | ^~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:34.72-74: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000035;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 34 | %type '+' '-' '*' '/' '(' ')' '[' ']' '.' '=' '^' '{' '}' ',... | ^ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:34.76-78: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000036;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 34 | ... ',' '|' ';' | ^~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:35.16-18: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000037;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 35 | %type ':' '?' | ^~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y:35.20-22: warning: POSIX yacc reserves %type to nonterminals []8;id=afa642000601ac1fc9c9ae00000038;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wyacc\-Wyacc]8;;\] 35 | %type ':' '?' | ^~~ /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y: warning: 111 shift/reduce conflicts []8;id=afa642000601ac1fc9c9ae00000039;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wconflicts-sr\-Wconflicts-sr]8;;\] /construction/science/minc2/minc-release-2.2.00/progs/minccalc/gram.y: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples updating progs/minccalc/gram.h cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -Iprogs/minccalc -I./progs/minccalc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/minccalc/minccalc-gram.o -MD -MP -MF progs/minccalc/.deps/minccalc-gram.Tpo -c -o progs/minccalc/minccalc-gram.o `test -f 'progs/minccalc/gram.c' || echo './'`progs/minccalc/gram.c mv -f progs/minccalc/.deps/minccalc-gram.Tpo progs/minccalc/.deps/minccalc-gram.Po cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -Iprogs/minccalc -I./progs/minccalc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/minccalc/minccalc-eval.o -MD -MP -MF progs/minccalc/.deps/minccalc-eval.Tpo -c -o progs/minccalc/minccalc-eval.o `test -f 'progs/minccalc/eval.c' || echo './'`progs/minccalc/eval.c mv -f progs/minccalc/.deps/minccalc-eval.Tpo progs/minccalc/.deps/minccalc-eval.Po cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -Iprogs/minccalc -I./progs/minccalc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/minccalc/minccalc-ident.o -MD -MP -MF progs/minccalc/.deps/minccalc-ident.Tpo -c -o progs/minccalc/minccalc-ident.o `test -f 'progs/minccalc/ident.c' || echo './'`progs/minccalc/ident.c mv -f progs/minccalc/.deps/minccalc-ident.Tpo progs/minccalc/.deps/minccalc-ident.Po cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -Iprogs/minccalc -I./progs/minccalc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/minccalc/minccalc-lex.o -MD -MP -MF progs/minccalc/.deps/minccalc-lex.Tpo -c -o progs/minccalc/minccalc-lex.o `test -f 'progs/minccalc/lex.c' || echo './'`progs/minccalc/lex.c mv -f progs/minccalc/.deps/minccalc-lex.Tpo progs/minccalc/.deps/minccalc-lex.Po cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -Iprogs/minccalc -I./progs/minccalc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/minccalc/minccalc-node.o -MD -MP -MF progs/minccalc/.deps/minccalc-node.Tpo -c -o progs/minccalc/minccalc-node.o `test -f 'progs/minccalc/node.c' || echo './'`progs/minccalc/node.c mv -f progs/minccalc/.deps/minccalc-node.Tpo progs/minccalc/.deps/minccalc-node.Po cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -Iprogs/minccalc -I./progs/minccalc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/minccalc/minccalc-optim.o -MD -MP -MF progs/minccalc/.deps/minccalc-optim.Tpo -c -o progs/minccalc/minccalc-optim.o `test -f 'progs/minccalc/optim.c' || echo './'`progs/minccalc/optim.c mv -f progs/minccalc/.deps/minccalc-optim.Tpo progs/minccalc/.deps/minccalc-optim.Po cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -Iprogs/minccalc -I./progs/minccalc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/minccalc/minccalc-scalar.o -MD -MP -MF progs/minccalc/.deps/minccalc-scalar.Tpo -c -o progs/minccalc/minccalc-scalar.o `test -f 'progs/minccalc/scalar.c' || echo './'`progs/minccalc/scalar.c mv -f progs/minccalc/.deps/minccalc-scalar.Tpo progs/minccalc/.deps/minccalc-scalar.Po cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -Iprogs/minccalc -I./progs/minccalc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/minccalc/minccalc-sym.o -MD -MP -MF progs/minccalc/.deps/minccalc-sym.Tpo -c -o progs/minccalc/minccalc-sym.o `test -f 'progs/minccalc/sym.c' || echo './'`progs/minccalc/sym.c mv -f progs/minccalc/.deps/minccalc-sym.Tpo progs/minccalc/.deps/minccalc-sym.Po cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -Iprogs/minccalc -I./progs/minccalc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/minccalc/minccalc-vector.o -MD -MP -MF progs/minccalc/.deps/minccalc-vector.Tpo -c -o progs/minccalc/minccalc-vector.o `test -f 'progs/minccalc/vector.c' || echo './'`progs/minccalc/vector.c mv -f progs/minccalc/.deps/minccalc-vector.Tpo progs/minccalc/.deps/minccalc-vector.Po /bin/sh ./libtool --tag=CC --mode=link cc -Iprogs/minccalc -I./progs/minccalc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o minccalc progs/minccalc/minccalc-minccalc.o progs/minccalc/minccalc-gram.o progs/minccalc/minccalc-eval.o progs/minccalc/minccalc-ident.o progs/minccalc/minccalc-lex.o progs/minccalc/minccalc-node.o progs/minccalc/minccalc-optim.o progs/minccalc/minccalc-scalar.o progs/minccalc/minccalc-sym.o progs/minccalc/minccalc-vector.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -Iprogs/minccalc -I./progs/minccalc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/minccalc progs/minccalc/minccalc-minccalc.o progs/minccalc/minccalc-gram.o progs/minccalc/minccalc-eval.o progs/minccalc/minccalc-ident.o progs/minccalc/minccalc-lex.o progs/minccalc/minccalc-node.o progs/minccalc/minccalc-optim.o progs/minccalc/minccalc-scalar.o progs/minccalc/minccalc-sym.o progs/minccalc/minccalc-vector.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo progs/minccmp/minccmp.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/minccmp/minccmp.o -MD -MP -MF $depbase.Tpo -c -o progs/minccmp/minccmp.o progs/minccmp/minccmp.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o minccmp progs/minccmp/minccmp.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/minccmp progs/minccmp/minccmp.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo progs/mincconcat/mincconcat.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/mincconcat/mincconcat.o -MD -MP -MF $depbase.Tpo -c -o progs/mincconcat/mincconcat.o progs/mincconcat/mincconcat.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o mincconcat progs/mincconcat/mincconcat.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/mincconcat progs/mincconcat/mincconcat.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo progs/minccopy/minccopy.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/minccopy/minccopy.o -MD -MP -MF $depbase.Tpo -c -o progs/minccopy/minccopy.o progs/minccopy/minccopy.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o minccopy progs/minccopy/minccopy.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/minccopy progs/minccopy/minccopy.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo progs/mincexpand/mincexpand.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/mincexpand/mincexpand.o -MD -MP -MF $depbase.Tpo -c -o progs/mincexpand/mincexpand.o progs/mincexpand/mincexpand.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o mincexpand progs/mincexpand/mincexpand.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/mincexpand progs/mincexpand/mincexpand.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo progs/mincextract/mincextract.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/mincextract/mincextract.o -MD -MP -MF $depbase.Tpo -c -o progs/mincextract/mincextract.o progs/mincextract/mincextract.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o mincextract progs/mincextract/mincextract.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/mincextract progs/mincextract/mincextract.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo progs/mincgen/escapes.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/mincgen/escapes.o -MD -MP -MF $depbase.Tpo -c -o progs/mincgen/escapes.o progs/mincgen/escapes.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo progs/mincgen/genlib.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/mincgen/genlib.o -MD -MP -MF $depbase.Tpo -c -o progs/mincgen/genlib.o progs/mincgen/genlib.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo progs/mincgen/getfill.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/mincgen/getfill.o -MD -MP -MF $depbase.Tpo -c -o progs/mincgen/getfill.o progs/mincgen/getfill.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo progs/mincgen/init.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/mincgen/init.o -MD -MP -MF $depbase.Tpo -c -o progs/mincgen/init.o progs/mincgen/init.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo progs/mincgen/load.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/mincgen/load.o -MD -MP -MF $depbase.Tpo -c -o progs/mincgen/load.o progs/mincgen/load.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo progs/mincgen/main.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/mincgen/main.o -MD -MP -MF $depbase.Tpo -c -o progs/mincgen/main.o progs/mincgen/main.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./ac_config_aux/ylwrap progs/mincgen/ncgentab.y y.tab.c progs/mincgen/ncgentab.c y.tab.h `echo progs/mincgen/ncgentab.c | sed -e s/cc$/hh/ -e s/cpp$/hpp/ -e s/cxx$/hxx/ -e s/c++$/h++/ -e s/c$/h/` y.output progs/mincgen/ncgentab.output -- bison -y -d --debug /construction/science/minc2/minc-release-2.2.00/progs/mincgen/ncgentab.y: warning: 1 shift/reduce conflict []8;id=afa642000601ac203ea7cc00000000;https://www.gnu.org/software/bison/manual/html_node/Diagnostics.html#Wconflicts-sr\-Wconflicts-sr]8;;\] /construction/science/minc2/minc-release-2.2.00/progs/mincgen/ncgentab.y: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples updating progs/mincgen/ncgentab.h depbase=`echo progs/mincgen/ncgentab.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/mincgen/ncgentab.o -MD -MP -MF $depbase.Tpo -c -o progs/mincgen/ncgentab.o progs/mincgen/ncgentab.c &&\ mv -f $depbase.Tpo $depbase.Po progs/mincgen/ncgentab.c: In function 'yyparse': progs/mincgen/ncgentab.c:1254:16: warning: implicit declaration of function 'yylex' [-Wimplicit-function-declaration] yychar = yylex (); ^~~~~ progs/mincgen/ncgentab.c:2158:7: warning: implicit declaration of function 'yyerror'; did you mean 'yyerrok'? [-Wimplicit-function-declaration] yyerror (YY_("syntax error")); ^~~~~~~ yyerrok /bin/sh ./ac_config_aux/ylwrap progs/mincgen/ncgenyy.l lex.yy.c progs/mincgen/ncgenyy.c -- flex depbase=`echo progs/mincgen/ncgenyy.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/mincgen/ncgenyy.o -MD -MP -MF $depbase.Tpo -c -o progs/mincgen/ncgenyy.o progs/mincgen/ncgenyy.c &&\ mv -f $depbase.Tpo $depbase.Po progs/mincgen/ncgenyy.l: In function 'yylex': progs/mincgen/ncgenyy.l:59:5: warning: implicit declaration of function 'yyerror'; did you mean 'derror'? [-Wimplicit-function-declaration] yyerror("string too long, truncated\n"); ^~~~~~~ derror progs/mincgen/ncgenyy.l:131:17: warning: implicit declaration of function 'lookup'; did you mean 'lockf'? [-Wimplicit-function-declaration] if ((yylval = lookup((char *)yytext)) == YYLVAL_NULL) { ^~~~~~ lockf progs/mincgen/ncgenyy.l:31:22: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] #define YYLVAL_NULL ((YYSTYPE) NULL) ^ progs/mincgen/ncgenyy.l:131:44: note: in expansion of macro 'YYLVAL_NULL' if ((yylval = lookup((char *)yytext)) == YYLVAL_NULL) { ^~~~~~~~~~~ progs/mincgen/ncgenyy.l:132:13: warning: implicit declaration of function 'install'; did you mean 'syscall'? [-Wimplicit-function-declaration] yylval = install((char *)yytext); ^~~~~~~ syscall /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o mincgen progs/mincgen/escapes.o progs/mincgen/genlib.o progs/mincgen/getfill.o progs/mincgen/init.o progs/mincgen/load.o progs/mincgen/main.o progs/mincgen/ncgentab.o progs/mincgen/ncgenyy.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/mincgen progs/mincgen/escapes.o progs/mincgen/genlib.o progs/mincgen/getfill.o progs/mincgen/init.o progs/mincgen/load.o progs/mincgen/main.o progs/mincgen/ncgentab.o progs/mincgen/ncgenyy.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo progs/mincinfo/mincinfo.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/mincinfo/mincinfo.o -MD -MP -MF $depbase.Tpo -c -o progs/mincinfo/mincinfo.o progs/mincinfo/mincinfo.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o mincinfo progs/mincinfo/mincinfo.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/mincinfo progs/mincinfo/mincinfo.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo progs/minclookup/minclookup.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/minclookup/minclookup.o -MD -MP -MF $depbase.Tpo -c -o progs/minclookup/minclookup.o progs/minclookup/minclookup.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o minclookup progs/minclookup/minclookup.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/minclookup progs/minclookup/minclookup.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo progs/mincmakescalar/mincmakescalar.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/mincmakescalar/mincmakescalar.o -MD -MP -MF $depbase.Tpo -c -o progs/mincmakescalar/mincmakescalar.o progs/mincmakescalar/mincmakescalar.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o mincmakescalar progs/mincmakescalar/mincmakescalar.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/mincmakescalar progs/mincmakescalar/mincmakescalar.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo progs/mincmakevector/mincmakevector.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/mincmakevector/mincmakevector.o -MD -MP -MF $depbase.Tpo -c -o progs/mincmakevector/mincmakevector.o progs/mincmakevector/mincmakevector.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o mincmakevector progs/mincmakevector/mincmakevector.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/mincmakevector progs/mincmakevector/mincmakevector.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo progs/mincmath/mincmath.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/mincmath/mincmath.o -MD -MP -MF $depbase.Tpo -c -o progs/mincmath/mincmath.o progs/mincmath/mincmath.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o mincmath progs/mincmath/mincmath.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/mincmath progs/mincmath/mincmath.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -Iprogs/mincmorph -I./progs/mincmorph -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/mincmorph/mincmorph-mincmorph.o -MD -MP -MF progs/mincmorph/.deps/mincmorph-mincmorph.Tpo -c -o progs/mincmorph/mincmorph-mincmorph.o `test -f 'progs/mincmorph/mincmorph.c' || echo './'`progs/mincmorph/mincmorph.c mv -f progs/mincmorph/.deps/mincmorph-mincmorph.Tpo progs/mincmorph/.deps/mincmorph-mincmorph.Po cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -Iprogs/mincmorph -I./progs/mincmorph -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/mincmorph/mincmorph-kernel_io.o -MD -MP -MF progs/mincmorph/.deps/mincmorph-kernel_io.Tpo -c -o progs/mincmorph/mincmorph-kernel_io.o `test -f 'progs/mincmorph/kernel_io.c' || echo './'`progs/mincmorph/kernel_io.c mv -f progs/mincmorph/.deps/mincmorph-kernel_io.Tpo progs/mincmorph/.deps/mincmorph-kernel_io.Po cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -Iprogs/mincmorph -I./progs/mincmorph -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/mincmorph/mincmorph-kernel_ops.o -MD -MP -MF progs/mincmorph/.deps/mincmorph-kernel_ops.Tpo -c -o progs/mincmorph/mincmorph-kernel_ops.o `test -f 'progs/mincmorph/kernel_ops.c' || echo './'`progs/mincmorph/kernel_ops.c mv -f progs/mincmorph/.deps/mincmorph-kernel_ops.Tpo progs/mincmorph/.deps/mincmorph-kernel_ops.Po /bin/sh ./libtool --tag=CC --mode=link cc -Iprogs/mincmorph -I./progs/mincmorph -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o mincmorph progs/mincmorph/mincmorph-mincmorph.o progs/mincmorph/mincmorph-kernel_io.o progs/mincmorph/mincmorph-kernel_ops.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -Iprogs/mincmorph -I./progs/mincmorph -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/mincmorph progs/mincmorph/mincmorph-mincmorph.o progs/mincmorph/mincmorph-kernel_io.o progs/mincmorph/mincmorph-kernel_ops.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo progs/mincresample/mincresample.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/mincresample/mincresample.o -MD -MP -MF $depbase.Tpo -c -o progs/mincresample/mincresample.o progs/mincresample/mincresample.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo progs/mincresample/resample_volumes.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/mincresample/resample_volumes.o -MD -MP -MF $depbase.Tpo -c -o progs/mincresample/resample_volumes.o progs/mincresample/resample_volumes.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo progs/Proglib/convert_origin_to_start.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/Proglib/convert_origin_to_start.o -MD -MP -MF $depbase.Tpo -c -o progs/Proglib/convert_origin_to_start.o progs/Proglib/convert_origin_to_start.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o mincresample progs/mincresample/mincresample.o progs/mincresample/resample_volumes.o progs/Proglib/convert_origin_to_start.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/mincresample progs/mincresample/mincresample.o progs/mincresample/resample_volumes.o progs/Proglib/convert_origin_to_start.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo progs/mincreshape/mincreshape.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/mincreshape/mincreshape.o -MD -MP -MF $depbase.Tpo -c -o progs/mincreshape/mincreshape.o progs/mincreshape/mincreshape.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo progs/mincreshape/copy_data.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/mincreshape/copy_data.o -MD -MP -MF $depbase.Tpo -c -o progs/mincreshape/copy_data.o progs/mincreshape/copy_data.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o mincreshape progs/mincreshape/mincreshape.o progs/mincreshape/copy_data.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/mincreshape progs/mincreshape/mincreshape.o progs/mincreshape/copy_data.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -Iprogs/mincsample -I./progs/mincsample -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/mincsample/mincsample-mincsample.o -MD -MP -MF progs/mincsample/.deps/mincsample-mincsample.Tpo -c -o progs/mincsample/mincsample-mincsample.o `test -f 'progs/mincsample/mincsample.c' || echo './'`progs/mincsample/mincsample.c mv -f progs/mincsample/.deps/mincsample-mincsample.Tpo progs/mincsample/.deps/mincsample-mincsample.Po cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -Iprogs/mincsample -I./progs/mincsample -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/mincsample/mincsample-mt19937ar.o -MD -MP -MF progs/mincsample/.deps/mincsample-mt19937ar.Tpo -c -o progs/mincsample/mincsample-mt19937ar.o `test -f 'progs/mincsample/mt19937ar.c' || echo './'`progs/mincsample/mt19937ar.c mv -f progs/mincsample/.deps/mincsample-mt19937ar.Tpo progs/mincsample/.deps/mincsample-mt19937ar.Po /bin/sh ./libtool --tag=CC --mode=link cc -Iprogs/mincsample -I./progs/mincsample -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o mincsample progs/mincsample/mincsample-mincsample.o progs/mincsample/mincsample-mt19937ar.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -Iprogs/mincsample -I./progs/mincsample -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/mincsample progs/mincsample/mincsample-mincsample.o progs/mincsample/mincsample-mt19937ar.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo progs/mincstats/mincstats.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/mincstats/mincstats.o -MD -MP -MF $depbase.Tpo -c -o progs/mincstats/mincstats.o progs/mincstats/mincstats.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o mincstats progs/mincstats/mincstats.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/mincstats progs/mincstats/mincstats.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo progs/minctoraw/minctoraw.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/minctoraw/minctoraw.o -MD -MP -MF $depbase.Tpo -c -o progs/minctoraw/minctoraw.o progs/minctoraw/minctoraw.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o minctoraw progs/minctoraw/minctoraw.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/minctoraw progs/minctoraw/minctoraw.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo progs/mincview/invert_raw_image.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/mincview/invert_raw_image.o -MD -MP -MF $depbase.Tpo -c -o progs/mincview/invert_raw_image.o progs/mincview/invert_raw_image.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o invert_raw_image progs/mincview/invert_raw_image.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/invert_raw_image progs/mincview/invert_raw_image.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo progs/mincwindow/mincwindow.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/mincwindow/mincwindow.o -MD -MP -MF $depbase.Tpo -c -o progs/mincwindow/mincwindow.o progs/mincwindow/mincwindow.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o mincwindow progs/mincwindow/mincwindow.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/mincwindow progs/mincwindow/mincwindow.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo progs/rawtominc/rawtominc.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/rawtominc/rawtominc.o -MD -MP -MF $depbase.Tpo -c -o progs/rawtominc/rawtominc.o progs/rawtominc/rawtominc.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o rawtominc progs/rawtominc/rawtominc.o progs/Proglib/convert_origin_to_start.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/rawtominc progs/rawtominc/rawtominc.o progs/Proglib/convert_origin_to_start.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo progs/xfm/transformtags.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/xfm/transformtags.o -MD -MP -MF $depbase.Tpo -c -o progs/xfm/transformtags.o progs/xfm/transformtags.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o transformtags progs/xfm/transformtags.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/transformtags progs/xfm/transformtags.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo progs/xfm/xfm2def.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/xfm/xfm2def.o -MD -MP -MF $depbase.Tpo -c -o progs/xfm/xfm2def.o progs/xfm/xfm2def.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o xfm2def progs/xfm/xfm2def.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/xfm2def progs/xfm/xfm2def.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo progs/xfm/xfmconcat.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/xfm/xfmconcat.o -MD -MP -MF $depbase.Tpo -c -o progs/xfm/xfmconcat.o progs/xfm/xfmconcat.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o xfmconcat progs/xfm/xfmconcat.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/xfmconcat progs/xfm/xfmconcat.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo progs/xfm/xfminvert.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/xfm/xfminvert.o -MD -MP -MF $depbase.Tpo -c -o progs/xfm/xfminvert.o progs/xfm/xfminvert.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o xfminvert progs/xfm/xfminvert.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/xfminvert progs/xfm/xfminvert.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo progs/mincconvert/mincconvert.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/mincconvert/mincconvert.o -MD -MP -MF $depbase.Tpo -c -o progs/mincconvert/mincconvert.o progs/mincconvert/mincconvert.c &&\ mv -f $depbase.Tpo $depbase.Po progs/mincconvert/mincconvert.c: In function 'main': progs/mincconvert/mincconvert.c:214:14: warning: implicit declaration of function 'micreatex'; did you mean 'micreate'? [-Wimplicit-function-declaration] new_fd = micreatex(new_fname, flags, &opts); ^~~~~~~~~ micreate /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o mincconvert progs/mincconvert/mincconvert.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/mincconvert progs/mincconvert/mincconvert.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo progs/mincdump/mincdump.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/mincdump/mincdump.o -MD -MP -MF $depbase.Tpo -c -o progs/mincdump/mincdump.o progs/mincdump/mincdump.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo progs/mincdump/vardata.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/mincdump/vardata.o -MD -MP -MF $depbase.Tpo -c -o progs/mincdump/vardata.o progs/mincdump/vardata.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo progs/mincdump/dumplib.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/mincdump/dumplib.o -MD -MP -MF $depbase.Tpo -c -o progs/mincdump/dumplib.o progs/mincdump/dumplib.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o mincdump progs/mincdump/mincdump.o progs/mincdump/vardata.o progs/mincdump/dumplib.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/mincdump progs/mincdump/mincdump.o progs/mincdump/vardata.o progs/mincdump/dumplib.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo conversion/ecattominc/ecattominc.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/ecattominc/ecattominc.o -MD -MP -MF $depbase.Tpo -c -o conversion/ecattominc/ecattominc.o conversion/ecattominc/ecattominc.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo conversion/ecattominc/insertblood.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/ecattominc/insertblood.o -MD -MP -MF $depbase.Tpo -c -o conversion/ecattominc/insertblood.o conversion/ecattominc/insertblood.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo conversion/ecattominc/ecat_file.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/ecattominc/ecat_file.o -MD -MP -MF $depbase.Tpo -c -o conversion/ecattominc/ecat_file.o conversion/ecattominc/ecat_file.c &&\ mv -f $depbase.Tpo $depbase.Po conversion/ecattominc/ecat_file.c: In function 'get_dirblock': conversion/ecattominc/ecat_file.c:1025:7: warning: implicit declaration of function 'get_int32_value'; did you mean 'get_long_value'? [-Wimplicit-function-declaration] get_int32_value(&dirblock[offset], &value); ^~~~~~~~~~~~~~~ get_long_value depbase=`echo conversion/ecattominc/machine_indep.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/ecattominc/machine_indep.o -MD -MP -MF $depbase.Tpo -c -o conversion/ecattominc/machine_indep.o conversion/ecattominc/machine_indep.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o ecattominc conversion/ecattominc/ecattominc.o conversion/ecattominc/insertblood.o conversion/ecattominc/ecat_file.o conversion/ecattominc/machine_indep.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/ecattominc conversion/ecattominc/ecattominc.o conversion/ecattominc/insertblood.o conversion/ecattominc/ecat_file.o conversion/ecattominc/machine_indep.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo conversion/minctoecat/minctoecat.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/minctoecat/minctoecat.o -MD -MP -MF $depbase.Tpo -c -o conversion/minctoecat/minctoecat.o conversion/minctoecat/minctoecat.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo conversion/minctoecat/ecat_write.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/minctoecat/ecat_write.o -MD -MP -MF $depbase.Tpo -c -o conversion/minctoecat/ecat_write.o conversion/minctoecat/ecat_write.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo conversion/minctoecat/machine_indep.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/minctoecat/machine_indep.o -MD -MP -MF $depbase.Tpo -c -o conversion/minctoecat/machine_indep.o conversion/minctoecat/machine_indep.c &&\ mv -f $depbase.Tpo $depbase.Po conversion/minctoecat/machine_indep.c:188:1: warning: return type defaults to 'int' [-Wimplicit-int] read_matrix_data( fptr, strtblk, nblks, dptr, dtype) ^~~~~~~~~~~~~~~~ conversion/minctoecat/machine_indep.c: In function 'read_matrix_data': conversion/minctoecat/machine_indep.c:195:8: warning: implicit declaration of function 'mat_rblk' [-Wimplicit-function-declaration] err = mat_rblk( fptr, strtblk, dptr, nblks); ^~~~~~~~ conversion/minctoecat/machine_indep.c: At top level: conversion/minctoecat/machine_indep.c:200:1: warning: return type defaults to 'int' [-Wimplicit-int] write_matrix_data( fptr, strtblk, nblks, dptr, dtype) ^~~~~~~~~~~~~~~~~ conversion/minctoecat/machine_indep.c: In function 'write_matrix_data': conversion/minctoecat/machine_indep.c:219:8: warning: implicit declaration of function 'mat_wblk' [-Wimplicit-function-declaration] if ( mat_wblk( fptr, strtblk, dptr, nblks) < 0) error_flag++; ^~~~~~~~ /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o minctoecat conversion/minctoecat/minctoecat.o conversion/minctoecat/ecat_write.o conversion/minctoecat/machine_indep.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/minctoecat conversion/minctoecat/minctoecat.o conversion/minctoecat/ecat_write.o conversion/minctoecat/machine_indep.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo conversion/nifti1/mnc2nii.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/nifti1/mnc2nii.o -MD -MP -MF $depbase.Tpo -c -o conversion/nifti1/mnc2nii.o conversion/nifti1/mnc2nii.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo conversion/nifti1/nifti1_io.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/nifti1/nifti1_io.o -MD -MP -MF $depbase.Tpo -c -o conversion/nifti1/nifti1_io.o conversion/nifti1/nifti1_io.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo conversion/nifti1/znzlib.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/nifti1/znzlib.o -MD -MP -MF $depbase.Tpo -c -o conversion/nifti1/znzlib.o conversion/nifti1/znzlib.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o mnc2nii conversion/nifti1/mnc2nii.o conversion/nifti1/nifti1_io.o conversion/nifti1/znzlib.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/mnc2nii conversion/nifti1/mnc2nii.o conversion/nifti1/nifti1_io.o conversion/nifti1/znzlib.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo conversion/nifti1/nii2mnc.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/nifti1/nii2mnc.o -MD -MP -MF $depbase.Tpo -c -o conversion/nifti1/nii2mnc.o conversion/nifti1/nii2mnc.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o nii2mnc conversion/nifti1/nii2mnc.o conversion/nifti1/nifti1_io.o conversion/nifti1/znzlib.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/nii2mnc conversion/nifti1/nii2mnc.o conversion/nifti1/nifti1_io.o conversion/nifti1/znzlib.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo conversion/micropet/upet2mnc.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/micropet/upet2mnc.o -MD -MP -MF $depbase.Tpo -c -o conversion/micropet/upet2mnc.o conversion/micropet/upet2mnc.c &&\ mv -f $depbase.Tpo $depbase.Po conversion/micropet/upet2mnc.c: In function 'upet_to_minc': conversion/micropet/upet2mnc.c:566:17: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] while (!isspace(*line_ptr)) { ^~~~~~~ conversion/micropet/upet2mnc.c: In function 'parse_time': conversion/micropet/upet2mnc.c:1077:12: warning: implicit declaration of function 'isdigit' [-Wimplicit-function-declaration] while (isdigit(*str_ptr)) { ^~~~~~~ /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o upet2mnc conversion/micropet/upet2mnc.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/upet2mnc conversion/micropet/upet2mnc.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo conversion/dcm2mnc/dcm2mnc.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/dcm2mnc/dcm2mnc.o -MD -MP -MF $depbase.Tpo -c -o conversion/dcm2mnc/dcm2mnc.o conversion/dcm2mnc/dcm2mnc.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo conversion/dcm2mnc/dicom_to_minc.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/dcm2mnc/dicom_to_minc.o -MD -MP -MF $depbase.Tpo -c -o conversion/dcm2mnc/dicom_to_minc.o conversion/dcm2mnc/dicom_to_minc.c &&\ mv -f $depbase.Tpo $depbase.Po conversion/dcm2mnc/dicom_to_minc.c: In function 'add_siemens_info': conversion/dcm2mnc/dicom_to_minc.c:1414:9: warning: implicit declaration of function 'is_numaris3' [-Wimplicit-function-declaration] if (is_numaris3(group_list)) { ^~~~~~~~~~~ depbase=`echo conversion/dcm2mnc/siemens_to_dicom.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/dcm2mnc/siemens_to_dicom.o -MD -MP -MF $depbase.Tpo -c -o conversion/dcm2mnc/siemens_to_dicom.o conversion/dcm2mnc/siemens_to_dicom.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo conversion/dcm2mnc/dicom_read.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/dcm2mnc/dicom_read.o -MD -MP -MF $depbase.Tpo -c -o conversion/dcm2mnc/dicom_read.o conversion/dcm2mnc/dicom_read.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo conversion/dcm2mnc/minc_file.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/dcm2mnc/minc_file.o -MD -MP -MF $depbase.Tpo -c -o conversion/dcm2mnc/minc_file.o conversion/dcm2mnc/minc_file.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo conversion/dcm2mnc/progress.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/dcm2mnc/progress.o -MD -MP -MF $depbase.Tpo -c -o conversion/dcm2mnc/progress.o conversion/dcm2mnc/progress.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo conversion/dcm2mnc/string_to_filename.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/dcm2mnc/string_to_filename.o -MD -MP -MF $depbase.Tpo -c -o conversion/dcm2mnc/string_to_filename.o conversion/dcm2mnc/string_to_filename.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo conversion/Acr_nema/acr_io.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/Acr_nema/acr_io.lo -MD -MP -MF $depbase.Tpo -c -o conversion/Acr_nema/acr_io.lo conversion/Acr_nema/acr_io.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/Acr_nema/acr_io.lo -MD -MP -MF conversion/Acr_nema/.deps/acr_io.Tpo -c conversion/Acr_nema/acr_io.c -fPIC -DPIC -o conversion/Acr_nema/.libs/acr_io.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/Acr_nema/acr_io.lo -MD -MP -MF conversion/Acr_nema/.deps/acr_io.Tpo -c conversion/Acr_nema/acr_io.c -o conversion/Acr_nema/acr_io.o >/dev/null 2>&1 depbase=`echo conversion/Acr_nema/dicom_client_routines.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/Acr_nema/dicom_client_routines.lo -MD -MP -MF $depbase.Tpo -c -o conversion/Acr_nema/dicom_client_routines.lo conversion/Acr_nema/dicom_client_routines.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/Acr_nema/dicom_client_routines.lo -MD -MP -MF conversion/Acr_nema/.deps/dicom_client_routines.Tpo -c conversion/Acr_nema/dicom_client_routines.c -fPIC -DPIC -o conversion/Acr_nema/.libs/dicom_client_routines.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/Acr_nema/dicom_client_routines.lo -MD -MP -MF conversion/Acr_nema/.deps/dicom_client_routines.Tpo -c conversion/Acr_nema/dicom_client_routines.c -o conversion/Acr_nema/dicom_client_routines.o >/dev/null 2>&1 depbase=`echo conversion/Acr_nema/dicom_network.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/Acr_nema/dicom_network.lo -MD -MP -MF $depbase.Tpo -c -o conversion/Acr_nema/dicom_network.lo conversion/Acr_nema/dicom_network.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/Acr_nema/dicom_network.lo -MD -MP -MF conversion/Acr_nema/.deps/dicom_network.Tpo -c conversion/Acr_nema/dicom_network.c -fPIC -DPIC -o conversion/Acr_nema/.libs/dicom_network.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/Acr_nema/dicom_network.lo -MD -MP -MF conversion/Acr_nema/.deps/dicom_network.Tpo -c conversion/Acr_nema/dicom_network.c -o conversion/Acr_nema/dicom_network.o >/dev/null 2>&1 depbase=`echo conversion/Acr_nema/element.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/Acr_nema/element.lo -MD -MP -MF $depbase.Tpo -c -o conversion/Acr_nema/element.lo conversion/Acr_nema/element.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/Acr_nema/element.lo -MD -MP -MF conversion/Acr_nema/.deps/element.Tpo -c conversion/Acr_nema/element.c -fPIC -DPIC -o conversion/Acr_nema/.libs/element.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/Acr_nema/element.lo -MD -MP -MF conversion/Acr_nema/.deps/element.Tpo -c conversion/Acr_nema/element.c -o conversion/Acr_nema/element.o >/dev/null 2>&1 depbase=`echo conversion/Acr_nema/file_io.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/Acr_nema/file_io.lo -MD -MP -MF $depbase.Tpo -c -o conversion/Acr_nema/file_io.lo conversion/Acr_nema/file_io.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/Acr_nema/file_io.lo -MD -MP -MF conversion/Acr_nema/.deps/file_io.Tpo -c conversion/Acr_nema/file_io.c -fPIC -DPIC -o conversion/Acr_nema/.libs/file_io.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/Acr_nema/file_io.lo -MD -MP -MF conversion/Acr_nema/.deps/file_io.Tpo -c conversion/Acr_nema/file_io.c -o conversion/Acr_nema/file_io.o >/dev/null 2>&1 depbase=`echo conversion/Acr_nema/globals.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/Acr_nema/globals.lo -MD -MP -MF $depbase.Tpo -c -o conversion/Acr_nema/globals.lo conversion/Acr_nema/globals.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/Acr_nema/globals.lo -MD -MP -MF conversion/Acr_nema/.deps/globals.Tpo -c conversion/Acr_nema/globals.c -fPIC -DPIC -o conversion/Acr_nema/.libs/globals.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/Acr_nema/globals.lo -MD -MP -MF conversion/Acr_nema/.deps/globals.Tpo -c conversion/Acr_nema/globals.c -o conversion/Acr_nema/globals.o >/dev/null 2>&1 depbase=`echo conversion/Acr_nema/group.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/Acr_nema/group.lo -MD -MP -MF $depbase.Tpo -c -o conversion/Acr_nema/group.lo conversion/Acr_nema/group.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/Acr_nema/group.lo -MD -MP -MF conversion/Acr_nema/.deps/group.Tpo -c conversion/Acr_nema/group.c -fPIC -DPIC -o conversion/Acr_nema/.libs/group.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/Acr_nema/group.lo -MD -MP -MF conversion/Acr_nema/.deps/group.Tpo -c conversion/Acr_nema/group.c -o conversion/Acr_nema/group.o >/dev/null 2>&1 depbase=`echo conversion/Acr_nema/message.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/Acr_nema/message.lo -MD -MP -MF $depbase.Tpo -c -o conversion/Acr_nema/message.lo conversion/Acr_nema/message.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/Acr_nema/message.lo -MD -MP -MF conversion/Acr_nema/.deps/message.Tpo -c conversion/Acr_nema/message.c -fPIC -DPIC -o conversion/Acr_nema/.libs/message.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/Acr_nema/message.lo -MD -MP -MF conversion/Acr_nema/.deps/message.Tpo -c conversion/Acr_nema/message.c -o conversion/Acr_nema/message.o >/dev/null 2>&1 depbase=`echo conversion/Acr_nema/value_repr.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ./libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/Acr_nema/value_repr.lo -MD -MP -MF $depbase.Tpo -c -o conversion/Acr_nema/value_repr.lo conversion/Acr_nema/value_repr.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/Acr_nema/value_repr.lo -MD -MP -MF conversion/Acr_nema/.deps/value_repr.Tpo -c conversion/Acr_nema/value_repr.c -fPIC -DPIC -o conversion/Acr_nema/.libs/value_repr.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/Acr_nema/value_repr.lo -MD -MP -MF conversion/Acr_nema/.deps/value_repr.Tpo -c conversion/Acr_nema/value_repr.c -o conversion/Acr_nema/value_repr.o >/dev/null 2>&1 /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o libacr_nema.la conversion/Acr_nema/acr_io.lo conversion/Acr_nema/dicom_client_routines.lo conversion/Acr_nema/dicom_network.lo conversion/Acr_nema/element.lo conversion/Acr_nema/file_io.lo conversion/Acr_nema/globals.lo conversion/Acr_nema/group.lo conversion/Acr_nema/message.lo conversion/Acr_nema/value_repr.lo -lhdf5 -lz -lnetcdf -lm libtool: link: ar cr .libs/libacr_nema.a conversion/Acr_nema/.libs/acr_io.o conversion/Acr_nema/.libs/dicom_client_routines.o conversion/Acr_nema/.libs/dicom_network.o conversion/Acr_nema/.libs/element.o conversion/Acr_nema/.libs/file_io.o conversion/Acr_nema/.libs/globals.o conversion/Acr_nema/.libs/group.o conversion/Acr_nema/.libs/message.o conversion/Acr_nema/.libs/value_repr.o libtool: link: ranlib .libs/libacr_nema.a libtool: link: ( cd ".libs" && rm -f "libacr_nema.la" && ln -s "../libacr_nema.la" "libacr_nema.la" ) /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o dcm2mnc conversion/dcm2mnc/dcm2mnc.o conversion/dcm2mnc/dicom_to_minc.o conversion/dcm2mnc/siemens_to_dicom.o conversion/dcm2mnc/dicom_read.o conversion/dcm2mnc/minc_file.o conversion/dcm2mnc/progress.o conversion/dcm2mnc/string_to_filename.o libacr_nema.la libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/dcm2mnc conversion/dcm2mnc/dcm2mnc.o conversion/dcm2mnc/dicom_to_minc.o conversion/dcm2mnc/siemens_to_dicom.o conversion/dcm2mnc/dicom_read.o conversion/dcm2mnc/minc_file.o conversion/dcm2mnc/progress.o conversion/dcm2mnc/string_to_filename.o -L/usr/local/lib ./.libs/libacr_nema.a ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo conversion/vff2mnc/vff2mnc.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT conversion/vff2mnc/vff2mnc.o -MD -MP -MF $depbase.Tpo -c -o conversion/vff2mnc/vff2mnc.o conversion/vff2mnc/vff2mnc.c &&\ mv -f $depbase.Tpo $depbase.Po conversion/vff2mnc/vff2mnc.c: In function 'read_2Dvff_files_image': conversion/vff2mnc/vff2mnc.c:689:7: warning: implicit declaration of function 'swab'; did you mean 'stat'? [-Wimplicit-function-declaration] swab(buffer, buffer, counts * number_of_bits); ^~~~ stat /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o vff2mnc conversion/vff2mnc/vff2mnc.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/vff2mnc conversion/vff2mnc/vff2mnc.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo progs/mincexample/mincexample1.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/mincexample/mincexample1.o -MD -MP -MF $depbase.Tpo -c -o progs/mincexample/mincexample1.o progs/mincexample/mincexample1.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o mincexample1 progs/mincexample/mincexample1.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/mincexample1 progs/mincexample/mincexample1.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib depbase=`echo progs/mincexample/mincexample2.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -DHAVE_CONFIG_H -I. -I./libsrc -I./volume_io/Include -I./volume_io/Include -I./progs/Proglib -I./conversion/Acr_nema -I./libsrc2 -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT progs/mincexample/mincexample2.o -MD -MP -MF $depbase.Tpo -c -o progs/mincexample/mincexample2.o progs/mincexample/mincexample2.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o mincexample2 progs/mincexample/mincexample2.o libvolume_io2.la libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/mincexample2 progs/mincexample/mincexample2.o -L/usr/local/lib ./.libs/libvolume_io2.so ./.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib /usr/local/bin/pod2man --section=1 progs/minccomplete/minccomplete > progs/minccomplete/minccomplete.man1 /usr/local/bin/pod2man --section=1 progs/minchistory/minchistory > progs/minchistory/minchistory.man1 /usr/local/bin/pod2man --section=1 progs/mincpik/mincpik > progs/mincpik/mincpik.man1 gmake[3]: Leaving directory '/construction/science/minc2/minc-release-2.2.00' Making all in volume_io gmake[3]: Entering directory '/construction/science/minc2/minc-release-2.2.00/volume_io' Making all in Documentation gmake[4]: Entering directory '/construction/science/minc2/minc-release-2.2.00/volume_io/Documentation' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/construction/science/minc2/minc-release-2.2.00/volume_io/Documentation' Making all in Testing gmake[4]: Entering directory '/construction/science/minc2/minc-release-2.2.00/volume_io/Testing' cc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc -I../../volume_io/Include -I../../volume_io/Include -I../../progs/Proglib -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT example_modify.o -MD -MP -MF .deps/example_modify.Tpo -c -o example_modify.o example_modify.c mv -f .deps/example_modify.Tpo .deps/example_modify.Po /bin/sh ../../libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o example_modify example_modify.o ../../libvolume_io2.la ../../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/example_modify example_modify.o -L/usr/local/lib ../../.libs/libvolume_io2.so ../../.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib cc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc -I../../volume_io/Include -I../../volume_io/Include -I../../progs/Proglib -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT example_tags.o -MD -MP -MF .deps/example_tags.Tpo -c -o example_tags.o example_tags.c mv -f .deps/example_tags.Tpo .deps/example_tags.Po /bin/sh ../../libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o example_tags example_tags.o ../../libvolume_io2.la ../../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/example_tags example_tags.o -L/usr/local/lib ../../.libs/libvolume_io2.so ../../.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib cc -DHAVE_CONFIG_H -I. -I../.. -I../../libsrc -I../../volume_io/Include -I../../volume_io/Include -I../../progs/Proglib -I/usr/local/include -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -MT example_volume_io.o -MD -MP -MF .deps/example_volume_io.Tpo -c -o example_volume_io.o example_volume_io.c mv -f .deps/example_volume_io.Tpo .deps/example_volume_io.Po /bin/sh ../../libtool --tag=CC --mode=link cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -L/usr/local/lib -o example_volume_io example_volume_io.o ../../libvolume_io2.la ../../libminc2.la -lhdf5 -lz -lnetcdf -lm libtool: link: cc -pipe -Wno-error=return-type -O2 -fno-strict-aliasing -o .libs/example_volume_io example_volume_io.o -L/usr/local/lib ../../.libs/libvolume_io2.so ../../.libs/libminc2.so -lhdf5 -lz -lnetcdf -lm -Wl,-rpath -Wl,/usr/local/lib gmake[4]: Leaving directory '/construction/science/minc2/minc-release-2.2.00/volume_io/Testing' gmake[4]: Entering directory '/construction/science/minc2/minc-release-2.2.00/volume_io' gmake[4]: Nothing to be done for 'all-am'. gmake[4]: Leaving directory '/construction/science/minc2/minc-release-2.2.00/volume_io' gmake[3]: Leaving directory '/construction/science/minc2/minc-release-2.2.00/volume_io' Making all in testdir gmake[3]: Entering directory '/construction/science/minc2/minc-release-2.2.00/testdir' cd . && chmod +x run_test_arg_parse.sh run_tests.sh run_test2.sh xfmconcat_01.sh xfmconcat_02.sh run_test_progs.sh gmake[3]: Leaving directory '/construction/science/minc2/minc-release-2.2.00/testdir' Making all in doc gmake[3]: Entering directory '/construction/science/minc2/minc-release-2.2.00/doc' gmake[3]: Nothing to be done for 'all'. gmake[3]: Leaving directory '/construction/science/minc2/minc-release-2.2.00/doc' Making all in libsrc2/test gmake[3]: Entering directory '/construction/science/minc2/minc-release-2.2.00/libsrc2/test' cd . && chmod +x testminctools.sh gmake[3]: Leaving directory '/construction/science/minc2/minc-release-2.2.00/libsrc2/test' gmake[2]: Leaving directory '/construction/science/minc2/minc-release-2.2.00' gmake[1]: Leaving directory '/construction/science/minc2/minc-release-2.2.00' SUCCEEDED 00:02:43 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> minc2-2.2.00_14,1 depends on executable: bash - found ===> minc2-2.2.00_14,1 depends on package: perl5>=5.32.r0<5.33 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for minc2-2.2.00_14,1 ===> minc2-2.2.00_14,1 depends on executable: bash - found ===> minc2-2.2.00_14,1 depends on package: perl5>=5.32.r0<5.33 - found ===> Generating temporary packing list gmake[1]: Entering directory '/construction/science/minc2/minc-release-2.2.00' if test -z 'strip'; then \ gmake INSTALL_PROGRAM="/bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s" \ install_sh_PROGRAM="/bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s" INSTALL_STRIP_FLAG=-s \ install; \ else \ gmake INSTALL_PROGRAM="/bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s" \ install_sh_PROGRAM="/bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s" INSTALL_STRIP_FLAG=-s \ "INSTALL_PROGRAM_ENV=STRIPPROG='strip'" install; \ fi gmake[2]: Entering directory '/construction/science/minc2/minc-release-2.2.00' Making install in . gmake[3]: Entering directory '/construction/science/minc2/minc-release-2.2.00' gmake[4]: Entering directory '/construction/science/minc2/minc-release-2.2.00' /bin/mkdir -p '/construction/science/minc2/stage/usr/local/lib' /bin/sh ./libtool --mode=install /usr/bin/install -c -s libminc2.la libvolume_io2.la '/construction/science/minc2/stage/usr/local/lib' libtool: install: /usr/bin/install -c .libs/libminc2.so.3.0.0 /construction/science/minc2/stage/usr/local/lib/libminc2.so.3.0.0 libtool: install: strip --strip-unneeded /construction/science/minc2/stage/usr/local/lib/libminc2.so.3.0.0 libtool: install: (cd /construction/science/minc2/stage/usr/local/lib && { ln -s -f libminc2.so.3.0.0 libminc2.so.3 || { rm -f libminc2.so.3 && ln -s libminc2.so.3.0.0 libminc2.so.3; }; }) libtool: install: (cd /construction/science/minc2/stage/usr/local/lib && { ln -s -f libminc2.so.3.0.0 libminc2.so || { rm -f libminc2.so && ln -s libminc2.so.3.0.0 libminc2.so; }; }) libtool: install: /usr/bin/install -c .libs/libminc2.lai /construction/science/minc2/stage/usr/local/lib/libminc2.la libtool: install: /usr/bin/install -c .libs/libvolume_io2.so.3.0.0 /construction/science/minc2/stage/usr/local/lib/libvolume_io2.so.3.0.0 libtool: install: strip --strip-unneeded /construction/science/minc2/stage/usr/local/lib/libvolume_io2.so.3.0.0 libtool: install: (cd /construction/science/minc2/stage/usr/local/lib && { ln -s -f libvolume_io2.so.3.0.0 libvolume_io2.so.3 || { rm -f libvolume_io2.so.3 && ln -s libvolume_io2.so.3.0.0 libvolume_io2.so.3; }; }) libtool: install: (cd /construction/science/minc2/stage/usr/local/lib && { ln -s -f libvolume_io2.so.3.0.0 libvolume_io2.so || { rm -f libvolume_io2.so && ln -s libvolume_io2.so.3.0.0 libvolume_io2.so; }; }) libtool: install: /usr/bin/install -c .libs/libvolume_io2.lai /construction/science/minc2/stage/usr/local/lib/libvolume_io2.la libtool: install: /usr/bin/install -c .libs/libminc2.a /construction/science/minc2/stage/usr/local/lib/libminc2.a libtool: install: strip --strip-debug /construction/science/minc2/stage/usr/local/lib/libminc2.a libtool: install: chmod 644 /construction/science/minc2/stage/usr/local/lib/libminc2.a libtool: install: ranlib /construction/science/minc2/stage/usr/local/lib/libminc2.a libtool: install: /usr/bin/install -c .libs/libvolume_io2.a /construction/science/minc2/stage/usr/local/lib/libvolume_io2.a libtool: install: strip --strip-debug /construction/science/minc2/stage/usr/local/lib/libvolume_io2.a libtool: install: chmod 644 /construction/science/minc2/stage/usr/local/lib/libvolume_io2.a libtool: install: ranlib /construction/science/minc2/stage/usr/local/lib/libvolume_io2.a libtool: warning: remember to run 'libtool --finish /usr/local/lib' /bin/mkdir -p '/construction/science/minc2/stage/usr/local/bin' STRIPPROG='strip' /bin/sh ./libtool --mode=install /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s voxeltoworld worldtovoxel minc_modify_header mincaverage mincblob minccalc minccmp mincconcat minccopy mincexpand mincextract mincgen mincinfo minclookup mincmakescalar mincmakevector mincmath mincmorph mincresample mincreshape mincsample mincstats minctoraw invert_raw_image mincwindow rawtominc transformtags xfm2def xfmconcat xfminvert mincconvert mincdump ecattominc minctoecat mnc2nii nii2mnc upet2mnc dcm2mnc vff2mnc '/construction/science/minc2/stage/usr/local/bin' libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/voxeltoworld /construction/science/minc2/stage/usr/local/bin/voxeltoworld libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/worldtovoxel /construction/science/minc2/stage/usr/local/bin/worldtovoxel libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/minc_modify_header /construction/science/minc2/stage/usr/local/bin/minc_modify_header libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/mincaverage /construction/science/minc2/stage/usr/local/bin/mincaverage libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/mincblob /construction/science/minc2/stage/usr/local/bin/mincblob libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/minccalc /construction/science/minc2/stage/usr/local/bin/minccalc libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/minccmp /construction/science/minc2/stage/usr/local/bin/minccmp libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/mincconcat /construction/science/minc2/stage/usr/local/bin/mincconcat libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/minccopy /construction/science/minc2/stage/usr/local/bin/minccopy libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/mincexpand /construction/science/minc2/stage/usr/local/bin/mincexpand libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/mincextract /construction/science/minc2/stage/usr/local/bin/mincextract libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/mincgen /construction/science/minc2/stage/usr/local/bin/mincgen libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/mincinfo /construction/science/minc2/stage/usr/local/bin/mincinfo libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/minclookup /construction/science/minc2/stage/usr/local/bin/minclookup libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/mincmakescalar /construction/science/minc2/stage/usr/local/bin/mincmakescalar libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/mincmakevector /construction/science/minc2/stage/usr/local/bin/mincmakevector libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/mincmath /construction/science/minc2/stage/usr/local/bin/mincmath libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/mincmorph /construction/science/minc2/stage/usr/local/bin/mincmorph libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/mincresample /construction/science/minc2/stage/usr/local/bin/mincresample libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/mincreshape /construction/science/minc2/stage/usr/local/bin/mincreshape libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/mincsample /construction/science/minc2/stage/usr/local/bin/mincsample libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/mincstats /construction/science/minc2/stage/usr/local/bin/mincstats libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/minctoraw /construction/science/minc2/stage/usr/local/bin/minctoraw libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/invert_raw_image /construction/science/minc2/stage/usr/local/bin/invert_raw_image libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/mincwindow /construction/science/minc2/stage/usr/local/bin/mincwindow libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/rawtominc /construction/science/minc2/stage/usr/local/bin/rawtominc libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/transformtags /construction/science/minc2/stage/usr/local/bin/transformtags libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/xfm2def /construction/science/minc2/stage/usr/local/bin/xfm2def libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/xfmconcat /construction/science/minc2/stage/usr/local/bin/xfmconcat libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/xfminvert /construction/science/minc2/stage/usr/local/bin/xfminvert libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/mincconvert /construction/science/minc2/stage/usr/local/bin/mincconvert libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/mincdump /construction/science/minc2/stage/usr/local/bin/mincdump libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/ecattominc /construction/science/minc2/stage/usr/local/bin/ecattominc libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/minctoecat /construction/science/minc2/stage/usr/local/bin/minctoecat libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/mnc2nii /construction/science/minc2/stage/usr/local/bin/mnc2nii libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/nii2mnc /construction/science/minc2/stage/usr/local/bin/nii2mnc libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/upet2mnc /construction/science/minc2/stage/usr/local/bin/upet2mnc libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/dcm2mnc /construction/science/minc2/stage/usr/local/bin/dcm2mnc libtool: warning: 'libvolume_io2.la' has not been installed in '/usr/local/lib' libtool: warning: 'libminc2.la' has not been installed in '/usr/local/lib' libtool: install: /bin/sh /construction/science/minc2/minc-release-2.2.00/ac_config_aux/install-sh -c -s .libs/vff2mnc /construction/science/minc2/stage/usr/local/bin/vff2mnc /bin/mkdir -p '/construction/science/minc2/stage/usr/local/bin' install -m 555 progs/minccomplete/minccomplete progs/minchistory/minchistory progs/mincpik/mincpik progs/xfm/xfmflip '/construction/science/minc2/stage/usr/local/bin' /bin/mkdir -p '/construction/science/minc2/stage/usr/local/bin' install -m 555 progs/mincdiff/mincdiff progs/mincedit/mincedit progs/mincheader/mincheader progs/mincview/mincview '/construction/science/minc2/stage/usr/local/bin' /bin/mkdir -p '/construction/science/minc2/stage/usr/local/include' install -m 0644 libsrc/minc.h libsrc/ParseArgv.h libsrc/voxel_loop.h libsrc/nd_loop.h libsrc/time_stamp.h libsrc/minc_compat.h volume_io/Include/volume_io.h libsrc2/minc2.h libsrc/minc_simple.h '/construction/science/minc2/stage/usr/local/include' /bin/mkdir -p '/construction/science/minc2/stage/usr/local/include/volume_io' install -m 0644 volume_io/Include/volume_io/alloc.h volume_io/Include/volume_io/arrays.h volume_io/Include/volume_io/basic.h volume_io/Include/volume_io/def_math.h volume_io/Include/volume_io/files.h volume_io/Include/volume_io/geom_structs.h volume_io/Include/volume_io/geometry.h volume_io/Include/internal_volume_io.h volume_io/Include/volume_io/multidim.h volume_io/Include/volume_io/progress.h volume_io/Include/volume_io/string_funcs.h volume_io/Include/volume_io/system_dependent.h volume_io/Include/volume_io/transforms.h volume_io/Include/volume_io/vol_io_prototypes.h volume_io/Include/volume_io/volume.h volume_io/Include/volume_io/volume_cache.h '/construction/science/minc2/stage/usr/local/include/volume_io' /bin/mkdir -p '/construction/science/minc2/stage/usr/local/man/man1' install -m 0644 'progs/coordinates/voxeltoworld.man1' '/construction/science/minc2/stage/usr/local/man/man1/voxeltoworld.1' install -m 0644 'progs/minc_modify_header/minc_modify_header.man1' '/construction/science/minc2/stage/usr/local/man/man1/minc_modify_header.1' install -m 0644 'progs/mincaverage/mincaverage.man1' '/construction/science/minc2/stage/usr/local/man/man1/mincaverage.1' install -m 0644 'progs/mincblob/mincblob.man1' '/construction/science/minc2/stage/usr/local/man/man1/mincblob.1' install -m 0644 'progs/minccalc/minccalc.man1' '/construction/science/minc2/stage/usr/local/man/man1/minccalc.1' install -m 0644 'progs/minccomplete/minccomplete.man1' '/construction/science/minc2/stage/usr/local/man/man1/minccomplete.1' install -m 0644 'progs/mincconcat/mincconcat.man1' '/construction/science/minc2/stage/usr/local/man/man1/mincconcat.1' install -m 0644 'progs/minccmp/minccmp.man1' '/construction/science/minc2/stage/usr/local/man/man1/minccmp.1' install -m 0644 'progs/minccopy/minccopy.man1' '/construction/science/minc2/stage/usr/local/man/man1/minccopy.1' install -m 0644 'progs/mincdiff/mincdiff.man1' '/construction/science/minc2/stage/usr/local/man/man1/mincdiff.1' install -m 0644 'progs/mincedit/mincedit.man1' '/construction/science/minc2/stage/usr/local/man/man1/mincedit.1' install -m 0644 'progs/mincexpand/mincexpand.man1' '/construction/science/minc2/stage/usr/local/man/man1/mincexpand.1' install -m 0644 'progs/mincextract/mincextract.man1' '/construction/science/minc2/stage/usr/local/man/man1/mincextract.1' install -m 0644 'progs/mincgen/mincgen.man1' '/construction/science/minc2/stage/usr/local/man/man1/mincgen.1' install -m 0644 'progs/mincheader/mincheader.man1' '/construction/science/minc2/stage/usr/local/man/man1/mincheader.1' install -m 0644 'progs/minchistory/minchistory.man1' '/construction/science/minc2/stage/usr/local/man/man1/minchistory.1' install -m 0644 'progs/mincinfo/mincinfo.man1' '/construction/science/minc2/stage/usr/local/man/man1/mincinfo.1' install -m 0644 'progs/minclookup/minclookup.man1' '/construction/science/minc2/stage/usr/local/man/man1/minclookup.1' install -m 0644 'progs/mincmakescalar/mincmakescalar.man1' '/construction/science/minc2/stage/usr/local/man/man1/mincmakescalar.1' install -m 0644 'progs/mincmakevector/mincmakevector.man1' '/construction/science/minc2/stage/usr/local/man/man1/mincmakevector.1' install -m 0644 'progs/mincmath/mincmath.man1' '/construction/science/minc2/stage/usr/local/man/man1/mincmath.1' install -m 0644 'progs/mincpik/mincpik.man1' '/construction/science/minc2/stage/usr/local/man/man1/mincpik.1' install -m 0644 'progs/mincresample/mincresample.man1' '/construction/science/minc2/stage/usr/local/man/man1/mincresample.1' install -m 0644 'progs/mincreshape/mincreshape.man1' '/construction/science/minc2/stage/usr/local/man/man1/mincreshape.1' install -m 0644 'progs/mincstats/mincstats.man1' '/construction/science/minc2/stage/usr/local/man/man1/mincstats.1' install -m 0644 'progs/minctoraw/minctoraw.man1' '/construction/science/minc2/stage/usr/local/man/man1/minctoraw.1' install -m 0644 'progs/mincview/invert_raw_image.man1' '/construction/science/minc2/stage/usr/local/man/man1/invert_raw_image.1' install -m 0644 'progs/mincview/mincview.man1' '/construction/science/minc2/stage/usr/local/man/man1/mincview.1' install -m 0644 'progs/mincwindow/mincwindow.man1' '/construction/science/minc2/stage/usr/local/man/man1/mincwindow.1' install -m 0644 'progs/rawtominc/rawtominc.man1' '/construction/science/minc2/stage/usr/local/man/man1/rawtominc.1' install -m 0644 'progs/xfm/transformtags.man1' '/construction/science/minc2/stage/usr/local/man/man1/transformtags.1' install -m 0644 'progs/xfm/xfm2def.man1' '/construction/science/minc2/stage/usr/local/man/man1/xfm2def.1' install -m 0644 'progs/xfm/xfmconcat.man1' '/construction/science/minc2/stage/usr/local/man/man1/xfmconcat.1' install -m 0644 'progs/xfm/xfminvert.man1' '/construction/science/minc2/stage/usr/local/man/man1/xfminvert.1' install -m 0644 'progs/xfm/xfmflip.man1' '/construction/science/minc2/stage/usr/local/man/man1/xfmflip.1' install -m 0644 'progs/mincconvert/mincconvert.man1' '/construction/science/minc2/stage/usr/local/man/man1/mincconvert.1' install -m 0644 'conversion/ecattominc/ecattominc.man1' '/construction/science/minc2/stage/usr/local/man/man1/ecattominc.1' install -m 0644 'conversion/minctoecat/minctoecat.man1' '/construction/science/minc2/stage/usr/local/man/man1/minctoecat.1' install -m 0644 'conversion/nifti1/nii2mnc.man1' '/construction/science/minc2/stage/usr/local/man/man1/nii2mnc.1' install -m 0644 'conversion/nifti1/mnc2nii.man1' '/construction/science/minc2/stage/usr/local/man/man1/mnc2nii.1' install -m 0644 'conversion/micropet/upet2mnc.man1' '/construction/science/minc2/stage/usr/local/man/man1/upet2mnc.1' install -m 0644 'conversion/dcm2mnc/dcm2mnc.man1' '/construction/science/minc2/stage/usr/local/man/man1/dcm2mnc.1' install -m 0644 'conversion/vff2mnc/vff2mnc.man1' '/construction/science/minc2/stage/usr/local/man/man1/vff2mnc.1' /bin/mkdir -p '/construction/science/minc2/stage/usr/local/man/man3' install -m 0644 'libsrc/ParseArgv.man3' '/construction/science/minc2/stage/usr/local/man/man3/ParseArgv.3' gmake[4]: Leaving directory '/construction/science/minc2/minc-release-2.2.00' gmake[3]: Leaving directory '/construction/science/minc2/minc-release-2.2.00' Making install in volume_io gmake[3]: Entering directory '/construction/science/minc2/minc-release-2.2.00/volume_io' Making install in Documentation gmake[4]: Entering directory '/construction/science/minc2/minc-release-2.2.00/volume_io/Documentation' gmake[5]: Entering directory '/construction/science/minc2/minc-release-2.2.00/volume_io/Documentation' gmake[5]: Nothing to be done for 'install-exec-am'. gmake[5]: Nothing to be done for 'install-data-am'. gmake[5]: Leaving directory '/construction/science/minc2/minc-release-2.2.00/volume_io/Documentation' gmake[4]: Leaving directory '/construction/science/minc2/minc-release-2.2.00/volume_io/Documentation' Making install in Testing gmake[4]: Entering directory '/construction/science/minc2/minc-release-2.2.00/volume_io/Testing' gmake[5]: Entering directory '/construction/science/minc2/minc-release-2.2.00/volume_io/Testing' gmake[5]: Nothing to be done for 'install-exec-am'. gmake[5]: Nothing to be done for 'install-data-am'. gmake[5]: Leaving directory '/construction/science/minc2/minc-release-2.2.00/volume_io/Testing' gmake[4]: Leaving directory '/construction/science/minc2/minc-release-2.2.00/volume_io/Testing' gmake[4]: Entering directory '/construction/science/minc2/minc-release-2.2.00/volume_io' gmake[5]: Entering directory '/construction/science/minc2/minc-release-2.2.00/volume_io' gmake[5]: Nothing to be done for 'install-exec-am'. gmake[5]: Nothing to be done for 'install-data-am'. gmake[5]: Leaving directory '/construction/science/minc2/minc-release-2.2.00/volume_io' gmake[4]: Leaving directory '/construction/science/minc2/minc-release-2.2.00/volume_io' gmake[3]: Leaving directory '/construction/science/minc2/minc-release-2.2.00/volume_io' Making install in testdir gmake[3]: Entering directory '/construction/science/minc2/minc-release-2.2.00/testdir' cd . && chmod +x run_test_arg_parse.sh run_tests.sh run_test2.sh xfmconcat_01.sh xfmconcat_02.sh run_test_progs.sh gmake[4]: Entering directory '/construction/science/minc2/minc-release-2.2.00/testdir' gmake[4]: Nothing to be done for 'install-exec-am'. gmake[4]: Nothing to be done for 'install-data-am'. gmake[4]: Leaving directory '/construction/science/minc2/minc-release-2.2.00/testdir' gmake[3]: Leaving directory '/construction/science/minc2/minc-release-2.2.00/testdir' Making install in doc gmake[3]: Entering directory '/construction/science/minc2/minc-release-2.2.00/doc' gmake[4]: Entering directory '/construction/science/minc2/minc-release-2.2.00/doc' gmake[4]: Nothing to be done for 'install-exec-am'. gmake[4]: Nothing to be done for 'install-data-am'. gmake[4]: Leaving directory '/construction/science/minc2/minc-release-2.2.00/doc' gmake[3]: Leaving directory '/construction/science/minc2/minc-release-2.2.00/doc' Making install in libsrc2/test gmake[3]: Entering directory '/construction/science/minc2/minc-release-2.2.00/libsrc2/test' cd . && chmod +x testminctools.sh gmake[4]: Entering directory '/construction/science/minc2/minc-release-2.2.00/libsrc2/test' gmake[4]: Nothing to be done for 'install-exec-am'. gmake[4]: Nothing to be done for 'install-data-am'. gmake[4]: Leaving directory '/construction/science/minc2/minc-release-2.2.00/libsrc2/test' gmake[3]: Leaving directory '/construction/science/minc2/minc-release-2.2.00/libsrc2/test' gmake[2]: Leaving directory '/construction/science/minc2/minc-release-2.2.00' gmake[1]: Leaving directory '/construction/science/minc2/minc-release-2.2.00' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/libminc2.so.3.0.0 is linked to /usr/local/lib/../lib/libsz.so.2 from science/libaec but it is not declared as a dependency Error: /usr/local/lib/libminc2.so.3.0.0 is linked to /usr/local/lib/libzstd.so.1 from archivers/zstd but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libzstd.so:archivers/zstd Error: /usr/local/lib/libminc2.so.3.0.0 is linked to /usr/local/lib/libcurl.so.4 from ftp/curl but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libcurl.so:ftp/curl Error: /usr/local/lib/libminc2.so.3.0.0 is linked to /usr/local/lib/libaec.so.0 from science/libaec but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libaec.so:science/libaec Error: /usr/local/lib/libminc2.so.3.0.0 is linked to /usr/local/lib/libnghttp2.so.14 from www/libnghttp2 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libnghttp2.so:www/libnghttp2 Error: /usr/local/lib/libminc2.so.3.0.0 is linked to /usr/local/lib/libssh2.so.1 from security/libssh2 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libssh2.so:security/libssh2 Error: /usr/local/lib/libminc2.so.3.0.0 is linked to /usr/local/lib/libpsl.so.5 from dns/libpsl but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libpsl.so:dns/libpsl Error: /usr/local/lib/libminc2.so.3.0.0 is linked to /usr/local/lib/libssl.so.11 from security/openssl but it is not declared as a dependency Warning: you need USES=ssl Error: /usr/local/lib/libminc2.so.3.0.0 is linked to /usr/local/lib/libcrypto.so.11 from security/openssl but it is not declared as a dependency Warning: you need USES=ssl Error: /usr/local/lib/libminc2.so.3.0.0 is linked to /usr/local/lib/libidn2.so.0 from dns/libidn2 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libidn2.so:dns/libidn2 Error: /usr/local/lib/libminc2.so.3.0.0 is linked to /usr/local/lib/libunistring.so.5 from devel/libunistring but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libunistring.so:devel/libunistring Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:09 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for minc2-2.2.00_14,1 file sizes/checksums [124]: 0% file sizes/checksums [124]: 80% file sizes/checksums [124]: 100% Service unavailablepacking files [124]: 0% packing files [124]: 80% packing files [124]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:04 TOTAL TIME 00:03:32