------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 UNAME_r=6.5 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- QT_SELECT=qt5 QMAKEMODULES="/construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/mkspecs/modules:/usr/local/lib/qt5/mkspecs/modules" XDG_DATA_HOME=/construction/science/massxpert XDG_CONFIG_HOME=/construction/science/massxpert XDG_CACHE_HOME=/construction/science/massxpert/.cache HOME=/construction/science/massxpert TMPDIR="/tmp" PATH=/construction/science/massxpert/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/science/massxpert/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- QT_SELECT=qt5 QMAKEMODULES="/construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/mkspecs/modules:/usr/local/lib/qt5/mkspecs/modules" XDG_DATA_HOME=/construction/science/massxpert XDG_CONFIG_HOME=/construction/science/massxpert XDG_CACHE_HOME=/construction/science/massxpert/.cache HOME=/construction/science/massxpert TMPDIR="/tmp" PATH=/construction/science/massxpert/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/science/massxpert/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/science/massxpert/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- CMAKE_BUILD_TYPE="release" GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" GTK4_VERSION="4.0.0" QT_BINDIR="lib/qt5/bin" QT_INCDIR="include/qt5" QT_LIBDIR="lib/qt5" QT_ARCHDIR="lib/qt5" QT_PLUGINDIR="lib/qt5/plugins" QT_LIBEXECDIR="libexec/qt5" QT_IMPORTDIR="lib/qt5/imports" QT_QMLDIR="lib/qt5/qml" QT_DATADIR="share/qt5" QT_DOCDIR="share/doc/qt5" QT_L10NDIR="share/qt5/translations" QT_EXAMPLEDIR="share/examples/qt5" QT_TESTDIR="share/qt5/tests" QT_MKSPECDIR="lib/qt5/mkspecs" QT_TOOLDIR="lib/qt5/bin" OSREL=6.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/massxpert" EXAMPLESDIR="share/examples/massxpert" DATADIR="share/massxpert" WWWDIR="www/massxpert" ETCDIR="etc/massxpert" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/massxpert DOCSDIR=/usr/local/share/doc/massxpert EXAMPLESDIR=/usr/local/share/examples/massxpert WWWDIR=/usr/local/www/massxpert ETCDIR=/usr/local/etc/massxpert SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes DFLY_STING_XFAIL=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_COMPRESSION_FORMAT=.tgz DEVELOPER=1 WITH_CCACHE_BUILD=yes CCACHE_DIR=/ccache UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600503 OSVERSION=9999999 OSREL=6.5 _OSRELEASE=6.5-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=13 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/expat-2.5.0.pkg Installing /packages/All/libuv-1.46.0.pkg Installing /packages/All/indexinfo-0.3.1.pkg Installing /packages/All/gettext-runtime-0.21.1.pkg Installing /packages/All/openssl-1.1.1u,1.pkg Installing /packages/All/rhash-1.4.3.pkg Installing /packages/All/pkg-1.19.2.pkg Installing /packages/All/liblz4-1.9.4,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/zstd-1.5.5.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libarchive-3.6.2,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/ncurses-6.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from ncurses-6.4: -- To get the terminfo database please install the terminfo-db package: pkg install terminfo-db Installing /packages/All/cmake-core-3.26.1_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/qt5-buildtools-5.15.8p157.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required touch: /usr/local/include/qt5/QtCore/qconfig-modules.h: No such file or directory sed: /usr/local/include/qt5/QtCore/qconfig-modules.h: No such file or directory pkg: POST-INSTALL script failed Installing /packages/All/perl5-5.32.1_3.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/qt5-qmake-5.15.8p157_2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libICE-1.1.0_1,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libSM-1.2.3,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libXau-1.0.9.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/xorgproto-2022.1_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libXdmcp-1.1.3.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libxcb-1.15_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libX11-1.8.6,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libXext-1.3.4,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libXrender-0.9.10_2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/ccache-3.7.12_4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc create symlink for gcc (world) create symlink for g++ create symlink for g++ (world) ===== Message from ccache-3.7.12_4: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. Installing /packages/All/brotli-1.0.9,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/png-1.6.39.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/freetype2-2.12.1_2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from freetype2-2.12.1_2: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). Installing /packages/All/fontconfig-2.14.2,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Running fc-cache to build fontconfig cache... Installing /packages/All/libffi-3.4.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/pcre2-10.42.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/readline-8.2.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libxml2-2.10.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libiconv-1.17.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/mpdecimal-2.5.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/python39-3.9.17.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from python39-3.9.17: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 Installing /packages/All/glib-2.76.4,2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Generating GIO modules cache Compiling glib schemas No schema files found: doing nothing. Installing /packages/All/double-conversion-3.3.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/icu-73.2,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/qt5-core-5.15.8p157_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/dbus-1.14.6,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===> Creating groups. Creating group 'messagebus' with gid '556'. ===> Creating users Creating user 'messagebus' with uid '556'. Installing /packages/All/libevdev-1.5.9.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/graphite2-1.3.14.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/harfbuzz-7.3.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libepoll-shim-0.0.20230411.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libudev-devd-0.5.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libmtdev-1.1.6_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libgudev-234.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libwacom-1.5.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/py39-setuptools-63.1.0_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/py39-evdev-1.6.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/py39-six-1.16.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/py39-pyudev-0.22.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libinput-1.23.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/xcb-util-0.4.1,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/xcb-util-wm-0.4.2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/xcb-util-image-0.4.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/xcb-util-keysyms-0.4.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/xcb-util-renderutil-0.3.10.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/wayland-1.22.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from wayland-1.22.0: -- Wayland requires XDG_RUNTIME_DIR to be defined to a path that will contain "wayland-%d" unix(4) sockets. This is usually handled by consolekit2 (via ck-launch-session) or pam_xdg (via login). Installing /packages/All/xkeyboard-config-2.34_2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libxkbcommon-1.5.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from libxkbcommon-1.5.0: -- If arrow keys don't work under X11 switch to legacy rules e.g., For sh/bash/ksh/zsh run and (optionally) add into ~/.profile: export XKB_DEFAULT_RULES=xorg For csh/tcsh run and (optionally) add into ~/.login: setenv XKB_DEFAULT_RULES xorg Installing /packages/All/libglvnd-1.6.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/jpeg-turbo-2.1.5.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/qt5-dbus-5.15.8p157.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/ca_root_nss-3.89.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from ca_root_nss-3.89.1: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem Installing /packages/All/qt5-network-5.15.8p157.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/vulkan-headers-1.3.257.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/hicolor-icon-theme-0.17.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/xprop-1.2.6.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libXt-1.2.1,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libXmu-1.1.3,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/xset-1.2.5.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/xdg-utils-1.1.3_2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/encodings-1.0.5,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libfontenc-1.1.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/mkfontscale-1.2.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/font-bh-ttf-1.0.3_4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Running fc-cache to build fontconfig cache... Installing /packages/All/font-misc-meltho-1.0.3_4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/font-misc-ethiopic-1.0.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/dejavu-2.37_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Running fc-cache to build fontconfig cache... ===== Message from dejavu-2.37_1: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Installing /packages/All/xorg-fonts-truetype-7.7_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libXfixes-6.0.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libXi-1.8,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/qt5-gui-5.15.8p157_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libdaemon-0.14_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/dbus-glib-0.112.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/gdbm-1.23.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libevent-2.1.12.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/gnome_subr-1.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/avahi-app-0.8_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===> Creating groups. Creating group 'avahi' with gid '558'. ===> Creating users Creating user 'avahi' with uid '558'. Installing /packages/All/gmp-6.2.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/nettle-3.9.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libtasn1-4.19.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libunistring-1.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libidn2-2.3.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/p11-kit-0.24.1_2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/gnutls-3.7.9.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libpaper-1.1.28.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/cups-2.4.6.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===> Creating groups. Creating group 'cups' with gid '193'. ===> Creating users Creating user 'cups' with uid '193'. Installing /packages/All/qt5-widgets-5.15.8p157.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/qt5-printsupport-5.15.8p157.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/qt5-svg-5.15.8p8.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/qt5-xml-5.15.8p157.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required SUCCEEDED 00:00:29 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> massxpert-6.0.3 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> massxpert-6.0.3 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by massxpert-6.0.3 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> massxpert-6.0.3 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by massxpert-6.0.3 for building => SHA256 Checksum OK for debichem-team-massxpert-a21ad33eee0314df202146392023dfb3868b7d84_GL0.tar.gz. SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> massxpert-6.0.3 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by massxpert-6.0.3 for building ===> Extracting for massxpert-6.0.3 ===> massxpert-6.0.3 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by massxpert-6.0.3 for building => SHA256 Checksum OK for debichem-team-massxpert-a21ad33eee0314df202146392023dfb3868b7d84_GL0.tar.gz. Extracted Memory Use: 68.16M SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for massxpert-6.0.3 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> massxpert-6.0.3 depends on file: /usr/local/bin/cmake - found ===> massxpert-6.0.3 depends on package: qt5-buildtools>=5.15 - found ===> massxpert-6.0.3 depends on package: qt5-qmake>=5.15 - found ===> massxpert-6.0.3 depends on file: /usr/local/libdata/pkgconfig/ice.pc - found ===> massxpert-6.0.3 depends on file: /usr/local/libdata/pkgconfig/sm.pc - found ===> massxpert-6.0.3 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> massxpert-6.0.3 depends on file: /usr/local/libdata/pkgconfig/xau.pc - found ===> massxpert-6.0.3 depends on file: /usr/local/libdata/pkgconfig/xcb.pc - found ===> massxpert-6.0.3 depends on file: /usr/local/libdata/pkgconfig/xdmcp.pc - found ===> massxpert-6.0.3 depends on file: /usr/local/libdata/pkgconfig/xext.pc - found ===> massxpert-6.0.3 depends on file: /usr/local/libdata/pkgconfig/xrender.pc - found ===> massxpert-6.0.3 depends on file: /usr/local/bin/ccache - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> massxpert-6.0.3 depends on shared library: libexpat.so - found (/usr/local/lib/libexpat.so) ===> massxpert-6.0.3 depends on shared library: libfontconfig.so - found (/usr/local/lib/libfontconfig.so) ===> massxpert-6.0.3 depends on shared library: libfreetype.so - found (/usr/local/lib/libfreetype.so) ===> massxpert-6.0.3 depends on shared library: libpng.so - found (/usr/local/lib/libpng.so) ===> massxpert-6.0.3 depends on shared library: libglib-2.0.so - found (/usr/local/lib/libglib-2.0.so) ===> massxpert-6.0.3 depends on shared library: libintl.so - found (/usr/local/lib/libintl.so) ===> massxpert-6.0.3 depends on shared library: libQt5Core.so - found (/usr/local/lib/qt5/libQt5Core.so) ===> massxpert-6.0.3 depends on shared library: libQt5Gui.so - found (/usr/local/lib/qt5/libQt5Gui.so) ===> massxpert-6.0.3 depends on shared library: libQt5PrintSupport.so - found (/usr/local/lib/qt5/libQt5PrintSupport.so) ===> massxpert-6.0.3 depends on shared library: libQt5Svg.so - found (/usr/local/lib/qt5/libQt5Svg.so) ===> massxpert-6.0.3 depends on shared library: libQt5Widgets.so - found (/usr/local/lib/qt5/libQt5Widgets.so) ===> massxpert-6.0.3 depends on shared library: libQt5Xml.so - found (/usr/local/lib/qt5/libQt5Xml.so) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> massxpert-6.0.3 depends on file: /usr/local/bin/cmake - found ===> massxpert-6.0.3 depends on package: qt5-buildtools>=5.15 - found ===> massxpert-6.0.3 depends on package: qt5-qmake>=5.15 - found ===> massxpert-6.0.3 depends on file: /usr/local/libdata/pkgconfig/ice.pc - found ===> massxpert-6.0.3 depends on file: /usr/local/libdata/pkgconfig/sm.pc - found ===> massxpert-6.0.3 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> massxpert-6.0.3 depends on file: /usr/local/libdata/pkgconfig/xau.pc - found ===> massxpert-6.0.3 depends on file: /usr/local/libdata/pkgconfig/xcb.pc - found ===> massxpert-6.0.3 depends on file: /usr/local/libdata/pkgconfig/xdmcp.pc - found ===> massxpert-6.0.3 depends on file: /usr/local/libdata/pkgconfig/xext.pc - found ===> massxpert-6.0.3 depends on file: /usr/local/libdata/pkgconfig/xrender.pc - found ===> massxpert-6.0.3 depends on file: /usr/local/bin/ccache - found ===> massxpert-6.0.3 depends on shared library: libexpat.so - found (/usr/local/lib/libexpat.so) ===> massxpert-6.0.3 depends on shared library: libfontconfig.so - found (/usr/local/lib/libfontconfig.so) ===> massxpert-6.0.3 depends on shared library: libfreetype.so - found (/usr/local/lib/libfreetype.so) ===> massxpert-6.0.3 depends on shared library: libpng.so - found (/usr/local/lib/libpng.so) ===> massxpert-6.0.3 depends on shared library: libglib-2.0.so - found (/usr/local/lib/libglib-2.0.so) ===> massxpert-6.0.3 depends on shared library: libintl.so - found (/usr/local/lib/libintl.so) ===> massxpert-6.0.3 depends on shared library: libQt5Core.so - found (/usr/local/lib/qt5/libQt5Core.so) ===> massxpert-6.0.3 depends on shared library: libQt5Gui.so - found (/usr/local/lib/qt5/libQt5Gui.so) ===> massxpert-6.0.3 depends on shared library: libQt5PrintSupport.so - found (/usr/local/lib/qt5/libQt5PrintSupport.so) ===> massxpert-6.0.3 depends on shared library: libQt5Svg.so - found (/usr/local/lib/qt5/libQt5Svg.so) ===> massxpert-6.0.3 depends on shared library: libQt5Widgets.so - found (/usr/local/lib/qt5/libQt5Widgets.so) ===> massxpert-6.0.3 depends on shared library: libQt5Xml.so - found (/usr/local/lib/qt5/libQt5Xml.so) ===> Configuring for massxpert-6.0.3 ===> Performing out-of-source build /bin/mkdir -p /construction/science/massxpert/.build -- The C compiler identification is GNU 8.3.0 -- The CXX compiler identification is GNU 8.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/libexec/ccache/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done The devel directory where all the development projects should reside: /construction/science/massxpert/devel. Configuring build for project massXpert -- CMAKE_CXX_COMPILER: /usr/local/libexec/ccache/c++ -- Setting definition -Wno-unknown-pragmas. -- Setting definition -Wall -pedantic. -- Setting definition -Wextra. CMAKE_SOURCE_DIR: /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84 UNIX non APPLE environment Please run the configuration like this: cmake -G "Unix Makefiles" -DCMAKE_BUILD_TYPE=Debug -DBUILD_USER_MANUAL=1 ../development TARGET_LOWERCASE: massxpert -- Starting configuration of massXpert -- The build toolchain is: DragonFly  -- CMAKE_CURRENT_BINARY_DIR: /construction/science/massxpert/.build -- Compiling in release mode. -- CMAKE_BUILD_TYPE: Release. -- Main CMAKE_BINARY_DIR: /construction/science/massxpert/.build -- CMAKE_CXX_COMPILER: /usr/local/libexec/ccache/c++ -- Adding subdirectory src for TARGET: massxpert "Now configuring src/ for massxpert" -- required_target_link_libraries: -- Now printing all the include directories -I... -- included dir='/construction/science/massxpert/.build' -- included dir='/construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84' -- included dir='/construction/science/massxpert/.build/src' -- included dir='/construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84' -- included dir='/construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src' -- included dir='/usr/local/include/qt5' -- included dir='/usr/local/include/qt5/QtWidgets' -- included dir='/usr/local/include/qt5/QtGui' -- included dir='/usr/local/include/qt5/QtCore' -- included dir='/usr/local/lib/qt5/mkspecs/freebsd-g++' -- included dir='/usr/local/include' -- included dir='/usr/local/include/qt5' -- included dir='/usr/local/include/qt5/QtXml' -- included dir='/usr/local/include/qt5/QtCore' -- included dir='/usr/local/lib/qt5/mkspecs/freebsd-g++' -- included dir='/usr/local/include/qt5' -- included dir='/usr/local/include/qt5/QtSvg' -- included dir='/usr/local/include/qt5/QtWidgets' -- included dir='/usr/local/include/qt5/QtGui' -- included dir='/usr/local/include/qt5/QtCore' -- included dir='/usr/local/lib/qt5/mkspecs/freebsd-g++' -- included dir='/usr/local/include' -- included dir='/usr/local/include/qt5' -- included dir='/usr/local/include/qt5/QtPrintSupport' -- included dir='/usr/local/include/qt5/QtWidgets' -- included dir='/usr/local/include/qt5/QtGui' -- included dir='/usr/local/include/qt5/QtCore' -- included dir='/usr/local/lib/qt5/mkspecs/freebsd-g++' -- included dir='/usr/local/include' -- Now printing all the linking directories -L... -- Finished configuring of massxpert. -- CMAKE_INSTALL_PREFIX: /usr/local -- BIN_DIR: /usr/local/bin -- DATA_DIR: /usr/local/share/massxpert/data -- DOC_DIR: /usr/local/share/doc/massxpert -- Adding subdirectory data for project: massXpert -- Adding subdirectory doc for project: massXpert -- Starting configuration for the doc material for TARGET massxpert  -- Going to generate the man pages. Installing the doc files in /usr/local/share/doc/massxpert -- Finished configuration of the doc material. -- ~~~~~~~~~~~~~~~~~~~~~~~~ SUMMARY ~~~~~~~~~~~~~~~~~~~~~~~~ --  General configuration of the msXpertSuite project  -- System is detected by CMake as DragonFly  -- CMAKE_CXX_COMPILER: /usr/local/libexec/ccache/c++ -- CMAKE_CXX_STANDARD: 17 -- CMAKE_INSTALL_PREFIX: /usr/local -- TARGET: massxpert -- BIN_DIR: /usr/local/bin -- DOC_DIR: /usr/local/share/doc/massxpert -- Profiling is NOT requested (-DPROFILE=0) -- Warnings NOT treated as errors (-DWARNASERR=0) -- Debug support NOT requested. -- The typical cmake invocation on Debian GNU/Linux would be: cmake -DCMAKE_BUILD_TYPE=Debug -DBUILD_USER_MANUAL=1 ../../development -- The typical cmake invocation on win10-mingw64 would be: cmake -DCMAKE_BUILD_TYPE=Release ../../development -- The typical cmake invocation on MXE would be: x86_64-w64-mingw32.shared-cmake -DCMAKE_BUILD_TYPE=Release -DMXE=1 ../../development -- ~~~~~~~~~~~~~~~~~~~~~~~~ SUMMARY ~~~~~~~~~~~~~~~~~~~~~~~~ -- Configuring done (1.6s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_MODULE_LINKER_FLAGS CMAKE_SHARED_LINKER_FLAGS FETCHCONTENT_FULLY_DISCONNECTED THREADS_HAVE_PTHREAD_ARG -- Build files have been written to: /construction/science/massxpert/.build SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for massxpert-6.0.3 /usr/local/bin/cmake -S/construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84 -B/construction/science/massxpert/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/science/massxpert/.build/CMakeFiles /construction/science/massxpert/.build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/CMakeFiles/massxpert_autogen.dir/build.make src/CMakeFiles/massxpert_autogen.dir/depend cd /construction/science/massxpert/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84 /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src /construction/science/massxpert/.build /construction/science/massxpert/.build/src /construction/science/massxpert/.build/src/CMakeFiles/massxpert_autogen.dir/DependInfo.cmake --color= /usr/bin/make -f src/CMakeFiles/massxpert_autogen.dir/build.make src/CMakeFiles/massxpert_autogen.dir/build [ 1%] Automatic MOC for target massxpert cd /construction/science/massxpert/.build/src && /usr/local/bin/cmake -E cmake_autogen /construction/science/massxpert/.build/src/CMakeFiles/massxpert_autogen.dir/AutogenInfo.json Release [ 1%] Built target massxpert_autogen /usr/bin/make -f src/CMakeFiles/massxpert.dir/build.make src/CMakeFiles/massxpert.dir/depend [ 2%] Generating qrc_massxpert.cpp cd /construction/science/massxpert/.build/src && /usr/local/lib/qt5/bin/rcc --name massxpert --output /construction/science/massxpert/.build/src/qrc_massxpert.cpp /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/massxpert.qrc [ 2%] Generating ui_AboutDlg.h cd /construction/science/massxpert/.build/src && /usr/local/lib/qt5/bin/uic -o /construction/science/massxpert/.build/src/ui_AboutDlg.h /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/AboutDlg.ui [ 3%] Generating ui_AbstractPolChemDefDependentDlg.h cd /construction/science/massxpert/.build/src && /usr/local/lib/qt5/bin/uic -o /construction/science/massxpert/.build/src/ui_AbstractPolChemDefDependentDlg.h /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/AbstractPolChemDefDependentDlg.ui [ 3%] Generating ui_AtomDefDlg.h cd /construction/science/massxpert/.build/src && /usr/local/lib/qt5/bin/uic -o /construction/science/massxpert/.build/src/ui_AtomDefDlg.h /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/AtomDefDlg.ui [ 4%] Generating ui_CalculatorChemPadDlg.h cd /construction/science/massxpert/.build/src && /usr/local/lib/qt5/bin/uic -o /construction/science/massxpert/.build/src/ui_CalculatorChemPadDlg.h /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/CalculatorChemPadDlg.ui [ 5%] Generating ui_CalculatorRecorderDlg.h cd /construction/science/massxpert/.build/src && /usr/local/lib/qt5/bin/uic -o /construction/science/massxpert/.build/src/ui_CalculatorRecorderDlg.h /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/CalculatorRecorderDlg.ui [ 5%] Generating ui_CalculatorWnd.h cd /construction/science/massxpert/.build/src && /usr/local/lib/qt5/bin/uic -o /construction/science/massxpert/.build/src/ui_CalculatorWnd.h /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/CalculatorWnd.ui [ 6%] Generating ui_CleavageDlg.h cd /construction/science/massxpert/.build/src && /usr/local/lib/qt5/bin/uic -o /construction/science/massxpert/.build/src/ui_CleavageDlg.h /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/CleavageDlg.ui [ 6%] Generating ui_CleaveSpecDefDlg.h cd /construction/science/massxpert/.build/src && /usr/local/lib/qt5/bin/uic -o /construction/science/massxpert/.build/src/ui_CleaveSpecDefDlg.h /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/CleaveSpecDefDlg.ui [ 7%] Generating ui_CompositionsDlg.h cd /construction/science/massxpert/.build/src && /usr/local/lib/qt5/bin/uic -o /construction/science/massxpert/.build/src/ui_CompositionsDlg.h /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/CompositionsDlg.ui [ 8%] Generating ui_ConfigSettingsDlg.h cd /construction/science/massxpert/.build/src && /usr/local/lib/qt5/bin/uic -o /construction/science/massxpert/.build/src/ui_ConfigSettingsDlg.h /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/ConfigSettingsDlg.ui [ 8%] Generating ui_CrossLinkerDefDlg.h cd /construction/science/massxpert/.build/src && /usr/local/lib/qt5/bin/uic -o /construction/science/massxpert/.build/src/ui_CrossLinkerDefDlg.h /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/CrossLinkerDefDlg.ui [ 9%] Generating ui_DecimalPlacesOptionsDlg.h cd /construction/science/massxpert/.build/src && /usr/local/lib/qt5/bin/uic -o /construction/science/massxpert/.build/src/ui_DecimalPlacesOptionsDlg.h /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/DecimalPlacesOptionsDlg.ui [ 9%] Generating ui_FragSpecDefDlg.h cd /construction/science/massxpert/.build/src && /usr/local/lib/qt5/bin/uic -o /construction/science/massxpert/.build/src/ui_FragSpecDefDlg.h /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/FragSpecDefDlg.ui /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/FragSpecDefDlg.ui: Warning: The name 'gridLayout' (QGridLayout) is already in use, defaulting to 'gridLayout2'. [ 10%] Generating ui_FragmentationDlg.h cd /construction/science/massxpert/.build/src && /usr/local/lib/qt5/bin/uic -o /construction/science/massxpert/.build/src/ui_FragmentationDlg.h /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/FragmentationDlg.ui [ 11%] Generating ui_MassSearchDlg.h cd /construction/science/massxpert/.build/src && /usr/local/lib/qt5/bin/uic -o /construction/science/massxpert/.build/src/ui_MassSearchDlg.h /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/MassSearchDlg.ui /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/MassSearchDlg.ui: Warning: The name 'gridLayout' (QGridLayout) is already in use, defaulting to 'gridLayout3'. [ 11%] Generating ui_ModifDefDlg.h cd /construction/science/massxpert/.build/src && /usr/local/lib/qt5/bin/uic -o /construction/science/massxpert/.build/src/ui_ModifDefDlg.h /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/ModifDefDlg.ui [ 12%] Generating ui_MonomerCrossLinkDlg.h cd /construction/science/massxpert/.build/src && /usr/local/lib/qt5/bin/uic -o /construction/science/massxpert/.build/src/ui_MonomerCrossLinkDlg.h /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/MonomerCrossLinkDlg.ui [ 12%] Generating ui_MonomerDefDlg.h cd /construction/science/massxpert/.build/src && /usr/local/lib/qt5/bin/uic -o /construction/science/massxpert/.build/src/ui_MonomerDefDlg.h /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/MonomerDefDlg.ui [ 13%] Generating ui_MonomerModificationDlg.h cd /construction/science/massxpert/.build/src && /usr/local/lib/qt5/bin/uic -o /construction/science/massxpert/.build/src/ui_MonomerModificationDlg.h /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/MonomerModificationDlg.ui [ 14%] Generating ui_MzCalculationDlg.h cd /construction/science/massxpert/.build/src && /usr/local/lib/qt5/bin/uic -o /construction/science/massxpert/.build/src/ui_MzCalculationDlg.h /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/MzCalculationDlg.ui [ 14%] Generating ui_MzLabFormulaBasedActionsDlg.h cd /construction/science/massxpert/.build/src && /usr/local/lib/qt5/bin/uic -o /construction/science/massxpert/.build/src/ui_MzLabFormulaBasedActionsDlg.h /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/MzLabFormulaBasedActionsDlg.ui [ 15%] Generating ui_MzLabInputOligomerTableViewDlg.h cd /construction/science/massxpert/.build/src && /usr/local/lib/qt5/bin/uic -o /construction/science/massxpert/.build/src/ui_MzLabInputOligomerTableViewDlg.h /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/MzLabInputOligomerTableViewDlg.ui [ 15%] Generating ui_MzLabMassBasedActionsDlg.h cd /construction/science/massxpert/.build/src && /usr/local/lib/qt5/bin/uic -o /construction/science/massxpert/.build/src/ui_MzLabMassBasedActionsDlg.h /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/MzLabMassBasedActionsDlg.ui [ 16%] Generating ui_MzLabMatchBasedActionsDlg.h cd /construction/science/massxpert/.build/src && /usr/local/lib/qt5/bin/uic -o /construction/science/massxpert/.build/src/ui_MzLabMatchBasedActionsDlg.h /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/MzLabMatchBasedActionsDlg.ui [ 17%] Generating ui_MzLabOutputOligomerTableViewDlg.h cd /construction/science/massxpert/.build/src && /usr/local/lib/qt5/bin/uic -o /construction/science/massxpert/.build/src/ui_MzLabOutputOligomerTableViewDlg.h /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/MzLabOutputOligomerTableViewDlg.ui [ 17%] Generating ui_MzLabWnd.h cd /construction/science/massxpert/.build/src && /usr/local/lib/qt5/bin/uic -o /construction/science/massxpert/.build/src/ui_MzLabWnd.h /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/MzLabWnd.ui [ 18%] Generating ui_NumeralsLocaleConverterDlg.h cd /construction/science/massxpert/.build/src && /usr/local/lib/qt5/bin/uic -o /construction/science/massxpert/.build/src/ui_NumeralsLocaleConverterDlg.h /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/NumeralsLocaleConverterDlg.ui [ 18%] Generating ui_PkaPhPiDlg.h cd /construction/science/massxpert/.build/src && /usr/local/lib/qt5/bin/uic -o /construction/science/massxpert/.build/src/ui_PkaPhPiDlg.h /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/PkaPhPiDlg.ui [ 19%] Generating ui_PolChemDefWnd.h cd /construction/science/massxpert/.build/src && /usr/local/lib/qt5/bin/uic -o /construction/science/massxpert/.build/src/ui_PolChemDefWnd.h /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/PolChemDefWnd.ui [ 20%] Generating ui_PolymerModificationDlg.h cd /construction/science/massxpert/.build/src && /usr/local/lib/qt5/bin/uic -o /construction/science/massxpert/.build/src/ui_PolymerModificationDlg.h /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/PolymerModificationDlg.ui [ 20%] Generating ui_SequenceEditorFindDlg.h cd /construction/science/massxpert/.build/src && /usr/local/lib/qt5/bin/uic -o /construction/science/massxpert/.build/src/ui_SequenceEditorFindDlg.h /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/SequenceEditorFindDlg.ui [ 21%] Generating ui_SequenceEditorWnd.h cd /construction/science/massxpert/.build/src && /usr/local/lib/qt5/bin/uic -o /construction/science/massxpert/.build/src/ui_SequenceEditorWnd.h /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/SequenceEditorWnd.ui [ 21%] Generating ui_SequenceImportDlg.h cd /construction/science/massxpert/.build/src && /usr/local/lib/qt5/bin/uic -o /construction/science/massxpert/.build/src/ui_SequenceImportDlg.h /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/SequenceImportDlg.ui /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/SequenceImportDlg.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget1'. [ 22%] Generating ui_SequencePurificationDlg.h cd /construction/science/massxpert/.build/src && /usr/local/lib/qt5/bin/uic -o /construction/science/massxpert/.build/src/ui_SequencePurificationDlg.h /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/gui/ui/SequencePurificationDlg.ui cd /construction/science/massxpert/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84 /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src /construction/science/massxpert/.build /construction/science/massxpert/.build/src /construction/science/massxpert/.build/src/CMakeFiles/massxpert.dir/DependInfo.cmake --color= /usr/bin/make -f src/CMakeFiles/massxpert.dir/build.make src/CMakeFiles/massxpert.dir/build [ 22%] Building CXX object src/CMakeFiles/massxpert.dir/massxpert_autogen/mocs_compilation.cpp.o cd /construction/science/massxpert/.build/src && /usr/local/libexec/ccache/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_NO_DEBUG_OUTPUT -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/construction/science/massxpert/.build/src -I/construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src -I/construction/science/massxpert/.build/src/massxpert_autogen/include -I/construction/science/massxpert/.build -I/construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84 -I/usr/local/include/qt5/QtPrintSupport -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-g++ -isystem /usr/local/include -isystem /usr/local/include/qt5/QtXml -isystem /usr/local/include/qt5/QtSvg -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -pedantic -Wextra -fPIC -MD -MT src/CMakeFiles/massxpert.dir/massxpert_autogen/mocs_compilation.cpp.o -MF CMakeFiles/massxpert.dir/massxpert_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/massxpert.dir/massxpert_autogen/mocs_compilation.cpp.o -c /construction/science/massxpert/.build/src/massxpert_autogen/mocs_compilation.cpp [ 23%] Building CXX object src/CMakeFiles/massxpert.dir/nongui/globals.cpp.o cd /construction/science/massxpert/.build/src && /usr/local/libexec/ccache/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_NO_DEBUG_OUTPUT -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/construction/science/massxpert/.build/src -I/construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src -I/construction/science/massxpert/.build/src/massxpert_autogen/include -I/construction/science/massxpert/.build -I/construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84 -I/usr/local/include/qt5/QtPrintSupport -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-g++ -isystem /usr/local/include -isystem /usr/local/include/qt5/QtXml -isystem /usr/local/include/qt5/QtSvg -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -pedantic -Wextra -fPIC -MD -MT src/CMakeFiles/massxpert.dir/nongui/globals.cpp.o -MF CMakeFiles/massxpert.dir/nongui/globals.cpp.o.d -o CMakeFiles/massxpert.dir/nongui/globals.cpp.o -c /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/nongui/globals.cpp /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/nongui/globals.cpp: In function 'void msxps::massxpert::doubleListStatistics(QList, double*, double*, double*, double*, double*, double*, double*, double*)': /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/nongui/globals.cpp:186:24: error: 'sqrt' is not a member of 'std' *stdDeviation = std::sqrt(*variance); ^~~~ /construction/science/massxpert/massxpert-a21ad33eee0314df202146392023dfb3868b7d84/src/nongui/globals.cpp:186:24: note: suggested alternative: 'sort' *stdDeviation = std::sqrt(*variance); ^~~~ sort *** Error code 1 Stop. make[4]: stopped in /construction/science/massxpert/.build *** Error code 1 Stop. make[3]: stopped in /construction/science/massxpert/.build *** Error code 1 Stop. make[2]: stopped in /construction/science/massxpert/.build *** Error code 1 Stop. make[1]: stopped in /xports/science/massxpert *** Error code 1 Stop. make: stopped in /xports/science/massxpert FAILED 00:00:11