------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 UNAME_r=6.5 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/science/cdk XDG_CONFIG_HOME=/construction/science/cdk XDG_CACHE_HOME=/construction/science/cdk/.cache HOME=/construction/science/cdk TMPDIR="/tmp" PATH=/construction/science/cdk/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/science/cdk/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/science/cdk XDG_CONFIG_HOME=/construction/science/cdk XDG_CACHE_HOME=/construction/science/cdk/.cache HOME=/construction/science/cdk TMPDIR="/tmp" PATH=/construction/science/cdk/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/science/cdk/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/science/cdk/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- JAVASHAREDIR="share/java" JAVAJARDIR="share/java/classes" OSREL=6.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/cdk" EXAMPLESDIR="share/examples/cdk" DATADIR="share/cdk" WWWDIR="www/cdk" ETCDIR="etc/cdk" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" JAVA_VERSION="17" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/cdk DOCSDIR=/usr/local/share/doc/cdk EXAMPLESDIR=/usr/local/share/examples/cdk WWWDIR=/usr/local/www/cdk ETCDIR=/usr/local/etc/cdk SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes DFLY_STING_XFAIL=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_COMPRESSION_FORMAT=.tgz DEVELOPER=1 WITH_CCACHE_BUILD=yes CCACHE_DIR=/ccache UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600503 OSVERSION=9999999 OSREL=6.5 _OSRELEASE=6.5-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=13 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/maven-wrapper-2.pkg Installing /packages/All/brotli-1.0.9,1.pkg Installing /packages/All/png-1.6.39.pkg Installing /packages/All/freetype2-2.12.1_2.pkg ===== Message from freetype2-2.12.1_2: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). Installing /packages/All/expat-2.5.0.pkg Installing /packages/All/fontconfig-2.14.2,1.pkg Running fc-cache to build fontconfig cache... Installing /packages/All/libinotify-20211018.pkg ===== Message from libinotify-20211018: -- You might want to consider increasing the kern.maxfiles tunable if you plan to use this library for applications that need to monitor activity of a lot of files. Installing /packages/All/alsa-lib-1.2.2_1.pkg ===== Message from alsa-lib-1.2.2_1: -- ===> NOTICE: The alsa-lib port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing Installing /packages/All/giflib-5.2.1.pkg Installing /packages/All/javavmwrapper-2.7.9.pkg Installing /packages/All/libfontenc-1.1.4.pkg Installing /packages/All/mkfontscale-1.2.1.pkg Installing /packages/All/dejavu-2.37_1.pkg Running fc-cache to build fontconfig cache... ===== Message from dejavu-2.37_1: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Installing /packages/All/java-zoneinfo-2021.e.pkg Installing /packages/All/libXau-1.0.9.pkg Installing /packages/All/xorgproto-2022.1_1.pkg Installing /packages/All/libXdmcp-1.1.3.pkg Installing /packages/All/libxcb-1.15_1.pkg Installing /packages/All/libX11-1.8.6,1.pkg Installing /packages/All/libXext-1.3.4,1.pkg Installing /packages/All/libXfixes-6.0.0.pkg Installing /packages/All/libXi-1.8,1.pkg Installing /packages/All/libXrender-0.9.10_2.pkg Installing /packages/All/libICE-1.1.0_1,1.pkg Installing /packages/All/libSM-1.2.3,1.pkg Installing /packages/All/libXt-1.2.1,1.pkg Installing /packages/All/libXtst-1.2.3_2.pkg Installing /packages/All/openjdk8-8.372.07.1_1.pkg ===== Message from openjdk8-8.372.07.1_1: -- This OpenJDK implementation requires procfs(5) mounted on /proc. If you have not done it yet, please do the following: mount -t procfs proc /proc To make it permanent, you need the following lines in /etc/fstab: proc /proc procfs rw 0 0 Installing /packages/All/maven-3.8.8.pkg Installing /packages/All/graphite2-1.3.14.pkg Installing /packages/All/indexinfo-0.3.1.pkg Installing /packages/All/libffi-3.4.4.pkg Installing /packages/All/pcre2-10.42.pkg Installing /packages/All/gettext-runtime-0.21.1.pkg Installing /packages/All/ncurses-6.4.pkg ===== Message from ncurses-6.4: -- To get the terminfo database please install the terminfo-db package: pkg install terminfo-db Installing /packages/All/readline-8.2.1.pkg Installing /packages/All/libxml2-2.10.4.pkg Installing /packages/All/libiconv-1.17.pkg Installing /packages/All/mpdecimal-2.5.1.pkg Installing /packages/All/openssl-1.1.1u,1.pkg Installing /packages/All/python39-3.9.17.pkg ===== Message from python39-3.9.17: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 Installing /packages/All/glib-2.76.4,2.pkg Generating GIO modules cache Compiling glib schemas No schema files found: doing nothing. Installing /packages/All/harfbuzz-7.3.0.pkg Installing /packages/All/libdeflate-1.18.pkg Installing /packages/All/jbigkit-2.1_1.pkg Installing /packages/All/liblz4-1.9.4,1.pkg Installing /packages/All/zstd-1.5.5.pkg Installing /packages/All/jpeg-turbo-2.1.5.1.pkg Installing /packages/All/tiff-4.4.0_1.pkg Installing /packages/All/lcms2-2.15_1.pkg Installing /packages/All/font-bh-ttf-1.0.3_4.pkg Running fc-cache to build fontconfig cache... Installing /packages/All/font-misc-meltho-1.0.3_4.pkg Installing /packages/All/font-misc-ethiopic-1.0.4.pkg Installing /packages/All/encodings-1.0.5,1.pkg Installing /packages/All/xorg-fonts-truetype-7.7_1.pkg Installing /packages/All/libXrandr-1.5.2.pkg Installing /packages/All/openjdk17-17.0.7+7.1.pkg ===== Message from openjdk17-17.0.7+7.1: -- This OpenJDK implementation requires procfs(5) mounted on /proc. mount -t procfs proc /proc Installing /packages/All/ccache-3.7.12_4.pkg Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc create symlink for gcc (world) create symlink for g++ create symlink for g++ (world) ===== Message from ccache-3.7.12_4: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. SUCCEEDED 00:00:20 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> cdk-chemistry-2.7.1 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> cdk-chemistry-2.7.1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by cdk-chemistry-2.7.1 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> cdk-chemistry-2.7.1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by cdk-chemistry-2.7.1 for building => SHA256 Checksum OK for cdk-2.7.1-deps.tar.gz. => SHA256 Checksum OK for cdk-cdk-cdk-2.7.1_GH0.tar.gz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> cdk-chemistry-2.7.1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by cdk-chemistry-2.7.1 for building ===> Extracting for cdk-chemistry-2.7.1 => SHA256 Checksum OK for cdk-2.7.1-deps.tar.gz. => SHA256 Checksum OK for cdk-cdk-cdk-2.7.1_GH0.tar.gz. Extracted Memory Use: 133.64M SUCCEEDED 00:00:04 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for cdk-chemistry-2.7.1 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> cdk-chemistry-2.7.1 depends on executable: mvn - found ===> cdk-chemistry-2.7.1 depends on file: /usr/local/openjdk17/bin/java - found ===> cdk-chemistry-2.7.1 depends on file: /usr/local/bin/ccache - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> cdk-chemistry-2.7.1 depends on executable: mvn - found ===> cdk-chemistry-2.7.1 depends on file: /usr/local/openjdk17/bin/java - found ===> cdk-chemistry-2.7.1 depends on file: /usr/local/bin/ccache - found ===> Configuring for cdk-chemistry-2.7.1 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for cdk-chemistry-2.7.1 [INFO] Scanning for projects... [INFO] ------------------------------------------------------------------------ [INFO] Reactor Build Order: [INFO] [INFO] cdk [pom] [INFO] cdk-base [pom] [INFO] cdk-interfaces [jar] [INFO] cdk-core [jar] [INFO] cdk-standard [jar] [INFO] cdk-atomtype [jar] [INFO] cdk-valencycheck [jar] [INFO] cdk-misc [pom] [INFO] cdk-diff [jar] [INFO] cdk-test [jar] [INFO] cdk-data [jar] [INFO] cdk-storage [pom] [INFO] cdk-ioformats [jar] [INFO] cdk-silent [jar] [INFO] cdk-isomorphism [jar] [INFO] cdk-datadebug [jar] [INFO] cdk-ctab [jar] [INFO] cdk-io [jar] [INFO] cdk-tool [pom] [INFO] cdk-formula [jar] [INFO] cdk-dict [jar] [INFO] cdk-pdb [jar] [INFO] cdk-libiocml [jar] [INFO] cdk-smiles [jar] [INFO] cdk-extra [jar] [INFO] cdk-smarts [jar] [INFO] cdk-reaction [jar] [INFO] cdk-descriptor [pom] [INFO] cdk-fingerprint [jar] [INFO] cdk-cip [jar] [INFO] cdk-signature [jar] [INFO] cdk-charges [jar] [INFO] cdk-forcefield [jar] [INFO] cdk-sdg [jar] [INFO] cdk-builder3dtools [jar] [INFO] cdk-builder3d [jar] [INFO] cdk-qsar [jar] [INFO] cdk-ionpot [jar] [INFO] cdk-qsaratomic [jar] [INFO] cdk-qsarbond [jar] [INFO] cdk-hash [jar] [INFO] cdk-fragment [jar] [INFO] cdk-model [jar] [INFO] cdk-qsarmolecular [jar] [INFO] cdk-qsarcml [jar] [INFO] cdk-qsarionpot [jar] [INFO] cdk-qsarprotein [jar] [INFO] cdk-display [pom] [INFO] cdk-render [jar] [INFO] cdk-renderbasic [jar] [INFO] cdk-renderawt [jar] [INFO] cdk-renderextra [jar] [INFO] cdk-control [jar] [INFO] cdk-qm [jar] [INFO] cdk-iordf [jar] [INFO] cdk-libiomd [jar] [INFO] cdk-pdbcml [jar] [INFO] cdk-jniinchi-support [jar] [INFO] cdk-inchi [jar] [INFO] cdk-group [jar] [INFO] cdk-pcore [jar] [INFO] cdk-structgen [jar] [INFO] cdk-tautomer [jar] [INFO] cdk-legacy [jar] [INFO] cdk-app [pom] [INFO] cdk-depict [jar] [INFO] cdk-bundle [jar] [INFO] cdk-annotation [jar] [INFO] cdk-test-atomtype [jar] [INFO] cdk-log4j [jar] [INFO] cdk-test-core [jar] [INFO] cdk-test-standard [jar] [INFO] cdk-test-valencycheck [jar] [INFO] cdk-qsarsubstance [jar] [INFO] cdk-test-extra [jar] [INFO] [INFO] ----------------------< org.openscience.cdk:cdk >----------------------- [INFO] Building cdk 2.7.1 [1/75] [INFO] from pom.xml [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk/2.7.1/cdk-2.7.1.pom [INFO] [INFO] --------------------< org.openscience.cdk:cdk-base >-------------------- [INFO] Building cdk-base 2.7.1 [2/75] [INFO] from base/pom.xml [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-base --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/base/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-base/2.7.1/cdk-base-2.7.1.pom [INFO] [INFO] -----------------< org.openscience.cdk:cdk-interfaces >----------------- [INFO] Building cdk-interfaces 2.7.1 [3/75] [INFO] from base/interfaces/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-interfaces --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/base/interfaces/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-interfaces --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 86 source files to /construction/science/cdk/cdk-cdk-2.7.1/base/interfaces/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-interfaces --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-interfaces --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.16:test (default-test) @ cdk-interfaces --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-interfaces --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/base/interfaces/target/cdk-interfaces-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-interfaces --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/base/interfaces/target/cdk-interfaces-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-interfaces/2.7.1/cdk-interfaces-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/base/interfaces/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-interfaces/2.7.1/cdk-interfaces-2.7.1.pom [INFO] [INFO] --------------------< org.openscience.cdk:cdk-core >-------------------- [INFO] Building cdk-core 2.7.1 [4/75] [INFO] from base/core/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-core --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] Copying 7 resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-core --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 81 source files to /construction/science/cdk/cdk-cdk-2.7.1/base/core/target/classes [INFO] /construction/science/cdk/cdk-cdk-2.7.1/base/core/src/main/java/org/openscience/cdk/graph/AllPairsShortestPaths.java: Some input files use or override a deprecated API. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/base/core/src/main/java/org/openscience/cdk/graph/AllPairsShortestPaths.java: Recompile with -Xlint:deprecation for details. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/base/core/src/main/java/org/openscience/cdk/io/ChemObjectIO.java: Some input files use unchecked or unsafe operations. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/base/core/src/main/java/org/openscience/cdk/io/ChemObjectIO.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-core --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-core --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.16:test (default-test) @ cdk-core --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-core --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/base/core/target/cdk-core-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-core --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/base/core/target/cdk-core-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-core/2.7.1/cdk-core-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/base/core/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-core/2.7.1/cdk-core-2.7.1.pom [INFO] [INFO] ------------------< org.openscience.cdk:cdk-standard >------------------ [INFO] Building cdk-standard 2.7.1 [5/75] [INFO] from base/standard/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-standard --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-standard --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 89 source files to /construction/science/cdk/cdk-cdk-2.7.1/base/standard/target/classes [INFO] /construction/science/cdk/cdk-cdk-2.7.1/base/standard/src/main/java/org/openscience/cdk/tools/HOSECodeGenerator.java: Some input files use or override a deprecated API. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/base/standard/src/main/java/org/openscience/cdk/tools/HOSECodeGenerator.java: Recompile with -Xlint:deprecation for details. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/base/standard/src/main/java/org/openscience/cdk/tools/HOSECodeGenerator.java: Some input files use unchecked or unsafe operations. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/base/standard/src/main/java/org/openscience/cdk/tools/HOSECodeGenerator.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-standard --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-standard --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.16:test (default-test) @ cdk-standard --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-standard --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/base/standard/target/cdk-standard-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-standard --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/base/standard/target/cdk-standard-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-standard/2.7.1/cdk-standard-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/base/standard/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-standard/2.7.1/cdk-standard-2.7.1.pom [INFO] [INFO] ------------------< org.openscience.cdk:cdk-atomtype >------------------ [INFO] Building cdk-atomtype 2.7.1 [6/75] [INFO] from base/atomtype/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-atomtype --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 7 resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-atomtype --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 5 source files to /construction/science/cdk/cdk-cdk-2.7.1/base/atomtype/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-atomtype --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-atomtype --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.16:test (default-test) @ cdk-atomtype --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-atomtype --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/base/atomtype/target/cdk-atomtype-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-atomtype --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/base/atomtype/target/cdk-atomtype-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-atomtype/2.7.1/cdk-atomtype-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/base/atomtype/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-atomtype/2.7.1/cdk-atomtype-2.7.1.pom [INFO] [INFO] ----------------< org.openscience.cdk:cdk-valencycheck >---------------- [INFO] Building cdk-valencycheck 2.7.1 [7/75] [INFO] from base/valencycheck/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-valencycheck --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/base/valencycheck/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-valencycheck --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 7 source files to /construction/science/cdk/cdk-cdk-2.7.1/base/valencycheck/target/classes [INFO] /construction/science/cdk/cdk-cdk-2.7.1/base/valencycheck/src/main/java/org/openscience/cdk/tools/AtomTypeAwareSaturationChecker.java: /construction/science/cdk/cdk-cdk-2.7.1/base/valencycheck/src/main/java/org/openscience/cdk/tools/AtomTypeAwareSaturationChecker.java uses or overrides a deprecated API. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/base/valencycheck/src/main/java/org/openscience/cdk/tools/AtomTypeAwareSaturationChecker.java: Recompile with -Xlint:deprecation for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-valencycheck --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-valencycheck --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.16:test (default-test) @ cdk-valencycheck --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-valencycheck --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/base/valencycheck/target/cdk-valencycheck-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-valencycheck --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/base/valencycheck/target/cdk-valencycheck-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-valencycheck/2.7.1/cdk-valencycheck-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/base/valencycheck/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-valencycheck/2.7.1/cdk-valencycheck-2.7.1.pom [INFO] [INFO] --------------------< org.openscience.cdk:cdk-misc >-------------------- [INFO] Building cdk-misc 2.7.1 [8/75] [INFO] from misc/pom.xml [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-misc --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/misc/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-misc/2.7.1/cdk-misc-2.7.1.pom [INFO] [INFO] --------------------< org.openscience.cdk:cdk-diff >-------------------- [INFO] Building cdk-diff 2.7.1 [9/75] [INFO] from misc/diff/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-diff --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/misc/diff/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-diff --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 24 source files to /construction/science/cdk/cdk-cdk-2.7.1/misc/diff/target/classes [INFO] /construction/science/cdk/cdk-cdk-2.7.1/misc/diff/src/main/java/org/openscience/cdk/tools/diff/AtomDiff.java: /construction/science/cdk/cdk-cdk-2.7.1/misc/diff/src/main/java/org/openscience/cdk/tools/diff/AtomDiff.java uses or overrides a deprecated API. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/misc/diff/src/main/java/org/openscience/cdk/tools/diff/AtomDiff.java: Recompile with -Xlint:deprecation for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-diff --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-diff --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-diff --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-diff --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/misc/diff/target/cdk-diff-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-diff --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/misc/diff/target/cdk-diff-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-diff/2.7.1/cdk-diff-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/misc/diff/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-diff/2.7.1/cdk-diff-2.7.1.pom [INFO] [INFO] --------------------< org.openscience.cdk:cdk-test >-------------------- [INFO] Building cdk-test 2.7.1 [10/75] [INFO] from base/test/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-test --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/base/test/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-test --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 51 source files to /construction/science/cdk/cdk-cdk-2.7.1/base/test/target/classes [INFO] /construction/science/cdk/cdk-cdk-2.7.1/base/test/src/main/java/org/openscience/cdk/test/interfaces/AbstractAtomContainerTest.java: Some input files use or override a deprecated API. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/base/test/src/main/java/org/openscience/cdk/test/interfaces/AbstractAtomContainerTest.java: Recompile with -Xlint:deprecation for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-test --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-test --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-test --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-test --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/base/test/target/cdk-test-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-test --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/base/test/target/cdk-test-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-test/2.7.1/cdk-test-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/base/test/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-test/2.7.1/cdk-test-2.7.1.pom [INFO] [INFO] --------------------< org.openscience.cdk:cdk-data >-------------------- [INFO] Building cdk-data 2.7.1 [11/75] [INFO] from base/data/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-data --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/base/data/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-data --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 41 source files to /construction/science/cdk/cdk-cdk-2.7.1/base/data/target/classes [INFO] /construction/science/cdk/cdk-cdk-2.7.1/base/data/src/main/java/org/openscience/cdk/AtomContainer.java: Some input files use or override a deprecated API. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/base/data/src/main/java/org/openscience/cdk/AtomContainer.java: Recompile with -Xlint:deprecation for details. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/base/data/src/main/java/org/openscience/cdk/AtomContainer.java: Some input files use unchecked or unsafe operations. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/base/data/src/main/java/org/openscience/cdk/AtomContainer.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-data --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-data --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-data --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-data --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/base/data/target/cdk-data-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-data --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/base/data/target/cdk-data-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-data/2.7.1/cdk-data-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/base/data/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-data/2.7.1/cdk-data-2.7.1.pom [INFO] [INFO] ------------------< org.openscience.cdk:cdk-storage >------------------- [INFO] Building cdk-storage 2.7.1 [12/75] [INFO] from storage/pom.xml [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-storage --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/storage/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-storage/2.7.1/cdk-storage-2.7.1.pom [INFO] [INFO] -----------------< org.openscience.cdk:cdk-ioformats >------------------ [INFO] Building cdk-ioformats 2.7.1 [13/75] [INFO] from storage/ioformats/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-ioformats --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-ioformats --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 102 source files to /construction/science/cdk/cdk-cdk-2.7.1/storage/ioformats/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-ioformats --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-ioformats --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-ioformats --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-ioformats --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/storage/ioformats/target/cdk-ioformats-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-ioformats --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/storage/ioformats/target/cdk-ioformats-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-ioformats/2.7.1/cdk-ioformats-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/storage/ioformats/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-ioformats/2.7.1/cdk-ioformats-2.7.1.pom [INFO] [INFO] -------------------< org.openscience.cdk:cdk-silent >------------------- [INFO] Building cdk-silent 2.7.1 [14/75] [INFO] from base/silent/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-silent --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/base/silent/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-silent --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 38 source files to /construction/science/cdk/cdk-cdk-2.7.1/base/silent/target/classes [INFO] /construction/science/cdk/cdk-cdk-2.7.1/base/silent/src/main/java/org/openscience/cdk/silent/AtomContainer.java: Some input files use or override a deprecated API. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/base/silent/src/main/java/org/openscience/cdk/silent/AtomContainer.java: Recompile with -Xlint:deprecation for details. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/base/silent/src/main/java/org/openscience/cdk/silent/AtomContainer.java: Some input files use unchecked or unsafe operations. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/base/silent/src/main/java/org/openscience/cdk/silent/AtomContainer.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-silent --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-silent --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-silent --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-silent --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/base/silent/target/cdk-silent-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-silent --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/base/silent/target/cdk-silent-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-silent/2.7.1/cdk-silent-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/base/silent/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-silent/2.7.1/cdk-silent-2.7.1.pom [INFO] [INFO] ----------------< org.openscience.cdk:cdk-isomorphism >----------------- [INFO] Building cdk-isomorphism 2.7.1 [15/75] [INFO] from base/isomorphism/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-isomorphism --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/base/isomorphism/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-isomorphism --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 31 source files to /construction/science/cdk/cdk-cdk-2.7.1/base/isomorphism/target/classes [INFO] /construction/science/cdk/cdk-cdk-2.7.1/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/matchers/QueryBond.java: Some input files use or override a deprecated API. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/matchers/QueryBond.java: Recompile with -Xlint:deprecation for details. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/matchers/QueryAtomContainerCreator.java: Some input files use unchecked or unsafe operations. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/matchers/QueryAtomContainerCreator.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-isomorphism --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-isomorphism --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-isomorphism --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-isomorphism --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/base/isomorphism/target/cdk-isomorphism-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-isomorphism --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/base/isomorphism/target/cdk-isomorphism-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-isomorphism/2.7.1/cdk-isomorphism-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/base/isomorphism/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-isomorphism/2.7.1/cdk-isomorphism-2.7.1.pom [INFO] [INFO] -----------------< org.openscience.cdk:cdk-datadebug >------------------ [INFO] Building cdk-datadebug 2.7.1 [16/75] [INFO] from base/datadebug/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-datadebug --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/base/datadebug/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-datadebug --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 37 source files to /construction/science/cdk/cdk-cdk-2.7.1/base/datadebug/target/classes [INFO] /construction/science/cdk/cdk-cdk-2.7.1/base/datadebug/src/main/java/org/openscience/cdk/debug/DebugBond.java: Some input files use or override a deprecated API. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/base/datadebug/src/main/java/org/openscience/cdk/debug/DebugBond.java: Recompile with -Xlint:deprecation for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-datadebug --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-datadebug --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-datadebug --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-datadebug --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/base/datadebug/target/cdk-datadebug-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-datadebug --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/base/datadebug/target/cdk-datadebug-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-datadebug/2.7.1/cdk-datadebug-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/base/datadebug/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-datadebug/2.7.1/cdk-datadebug-2.7.1.pom [INFO] [INFO] --------------------< org.openscience.cdk:cdk-ctab >-------------------- [INFO] Building cdk-ctab 2.7.1 [17/75] [INFO] from storage/ctab/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-ctab --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 5 resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-ctab --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 15 source files to /construction/science/cdk/cdk-cdk-2.7.1/storage/ctab/target/classes [INFO] /construction/science/cdk/cdk-cdk-2.7.1/storage/ctab/src/main/java/org/openscience/cdk/io/iterator/IteratingSDFReader.java: Some input files use or override a deprecated API. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/storage/ctab/src/main/java/org/openscience/cdk/io/iterator/IteratingSDFReader.java: Recompile with -Xlint:deprecation for details. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/storage/ctab/src/main/java/org/openscience/cdk/io/MDLRXNWriter.java: Some input files use unchecked or unsafe operations. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/storage/ctab/src/main/java/org/openscience/cdk/io/MDLRXNWriter.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-ctab --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-ctab --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-ctab --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-ctab --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/storage/ctab/target/cdk-ctab-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-ctab --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/storage/ctab/target/cdk-ctab-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-ctab/2.7.1/cdk-ctab-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/storage/ctab/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-ctab/2.7.1/cdk-ctab-2.7.1.pom [INFO] [INFO] ---------------------< org.openscience.cdk:cdk-io >--------------------- [INFO] Building cdk-io 2.7.1 [18/75] [INFO] from storage/io/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-io --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 7 resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-io --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 51 source files to /construction/science/cdk/cdk-cdk-2.7.1/storage/io/target/classes [INFO] /construction/science/cdk/cdk-cdk-2.7.1/storage/io/src/main/java/org/openscience/cdk/io/Gaussian98Reader.java: Some input files use unchecked or unsafe operations. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/storage/io/src/main/java/org/openscience/cdk/io/Gaussian98Reader.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-io --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-io --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-io --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-io --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/storage/io/target/cdk-io-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-io --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/storage/io/target/cdk-io-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-io/2.7.1/cdk-io-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/storage/io/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-io/2.7.1/cdk-io-2.7.1.pom [INFO] [INFO] --------------------< org.openscience.cdk:cdk-tool >-------------------- [INFO] Building cdk-tool 2.7.1 [19/75] [INFO] from tool/pom.xml [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-tool --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/tool/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-tool/2.7.1/cdk-tool-2.7.1.pom [INFO] [INFO] ------------------< org.openscience.cdk:cdk-formula >------------------- [INFO] Building cdk-formula 2.7.1 [20/75] [INFO] from tool/formula/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-formula --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/tool/formula/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-formula --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 22 source files to /construction/science/cdk/cdk-cdk-2.7.1/tool/formula/target/classes [INFO] /construction/science/cdk/cdk-cdk-2.7.1/tool/formula/src/main/java/org/openscience/cdk/formula/IsotopeContainer.java: Some input files use or override a deprecated API. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/tool/formula/src/main/java/org/openscience/cdk/formula/IsotopeContainer.java: Recompile with -Xlint:deprecation for details. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/tool/formula/src/main/java/org/openscience/cdk/formula/rules/IsotopePatternRule.java: /construction/science/cdk/cdk-cdk-2.7.1/tool/formula/src/main/java/org/openscience/cdk/formula/rules/IsotopePatternRule.java uses unchecked or unsafe operations. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/tool/formula/src/main/java/org/openscience/cdk/formula/rules/IsotopePatternRule.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-formula --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-formula --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-formula --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-formula --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/tool/formula/target/cdk-formula-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-formula --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/tool/formula/target/cdk-formula-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-formula/2.7.1/cdk-formula-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/tool/formula/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-formula/2.7.1/cdk-formula-2.7.1.pom [INFO] [INFO] --------------------< org.openscience.cdk:cdk-dict >-------------------- [INFO] Building cdk-dict 2.7.1 [21/75] [INFO] from base/dict/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-dict --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-dict --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 8 source files to /construction/science/cdk/cdk-cdk-2.7.1/base/dict/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-dict --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-dict --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-dict --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-dict --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/base/dict/target/cdk-dict-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-dict --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/base/dict/target/cdk-dict-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-dict/2.7.1/cdk-dict-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/base/dict/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-dict/2.7.1/cdk-dict-2.7.1.pom [INFO] [INFO] --------------------< org.openscience.cdk:cdk-pdb >--------------------- [INFO] Building cdk-pdb 2.7.1 [22/75] [INFO] from storage/pdb/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-pdb --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-pdb --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 6 source files to /construction/science/cdk/cdk-cdk-2.7.1/storage/pdb/target/classes [INFO] /construction/science/cdk/cdk-cdk-2.7.1/storage/pdb/src/main/java/org/openscience/cdk/io/PDBWriter.java: Some input files use unchecked or unsafe operations. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/storage/pdb/src/main/java/org/openscience/cdk/io/PDBWriter.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-pdb --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-pdb --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-pdb --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-pdb --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/storage/pdb/target/cdk-pdb-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-pdb --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/storage/pdb/target/cdk-pdb-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-pdb/2.7.1/cdk-pdb-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/storage/pdb/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-pdb/2.7.1/cdk-pdb-2.7.1.pom [INFO] [INFO] ------------------< org.openscience.cdk:cdk-libiocml >------------------ [INFO] Building cdk-libiocml 2.7.1 [23/75] [INFO] from storage/libiocml/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-libiocml --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-libiocml --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 4 source files to /construction/science/cdk/cdk-cdk-2.7.1/storage/libiocml/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-libiocml --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-libiocml --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-libiocml --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-libiocml --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/storage/libiocml/target/cdk-libiocml-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-libiocml --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/storage/libiocml/target/cdk-libiocml-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-libiocml/2.7.1/cdk-libiocml-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/storage/libiocml/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-libiocml/2.7.1/cdk-libiocml-2.7.1.pom [INFO] [INFO] -------------------< org.openscience.cdk:cdk-smiles >------------------- [INFO] Building cdk-smiles 2.7.1 [24/75] [INFO] from storage/smiles/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-smiles --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/storage/smiles/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-smiles --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 13 source files to /construction/science/cdk/cdk-cdk-2.7.1/storage/smiles/target/classes [INFO] /construction/science/cdk/cdk-cdk-2.7.1/storage/smiles/src/main/java/org/openscience/cdk/fingerprint/LingoFingerprinter.java: Some input files use or override a deprecated API. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/storage/smiles/src/main/java/org/openscience/cdk/fingerprint/LingoFingerprinter.java: Recompile with -Xlint:deprecation for details. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/storage/smiles/src/main/java/org/openscience/cdk/io/SMILESReader.java: Some input files use unchecked or unsafe operations. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/storage/smiles/src/main/java/org/openscience/cdk/io/SMILESReader.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-smiles --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-smiles --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-smiles --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-smiles --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/storage/smiles/target/cdk-smiles-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-smiles --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/storage/smiles/target/cdk-smiles-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-smiles/2.7.1/cdk-smiles-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/storage/smiles/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-smiles/2.7.1/cdk-smiles-2.7.1.pom [INFO] [INFO] -------------------< org.openscience.cdk:cdk-extra >-------------------- [INFO] Building cdk-extra 2.7.1 [25/75] [INFO] from misc/extra/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-extra --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 8 resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-extra --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 47 source files to /construction/science/cdk/cdk-cdk-2.7.1/misc/extra/target/classes [INFO] /construction/science/cdk/cdk-cdk-2.7.1/misc/extra/src/main/java/org/openscience/cdk/tools/AtomTypeTools.java: /construction/science/cdk/cdk-cdk-2.7.1/misc/extra/src/main/java/org/openscience/cdk/tools/AtomTypeTools.java uses or overrides a deprecated API. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/misc/extra/src/main/java/org/openscience/cdk/tools/AtomTypeTools.java: Recompile with -Xlint:deprecation for details. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/misc/extra/src/main/java/org/openscience/cdk/io/GamessReader.java: Some input files use unchecked or unsafe operations. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/misc/extra/src/main/java/org/openscience/cdk/io/GamessReader.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-extra --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-extra --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-extra --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-extra --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/misc/extra/target/cdk-extra-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-extra --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/misc/extra/target/cdk-extra-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-extra/2.7.1/cdk-extra-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/misc/extra/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-extra/2.7.1/cdk-extra-2.7.1.pom [INFO] [INFO] -------------------< org.openscience.cdk:cdk-smarts >------------------- [INFO] Building cdk-smarts 2.7.1 [26/75] [INFO] from tool/smarts/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-smarts --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/tool/smarts/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-smarts --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 3 source files to /construction/science/cdk/cdk-cdk-2.7.1/tool/smarts/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-smarts --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-smarts --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-smarts --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-smarts --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/tool/smarts/target/cdk-smarts-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-smarts --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/tool/smarts/target/cdk-smarts-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-smarts/2.7.1/cdk-smarts-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/tool/smarts/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-smarts/2.7.1/cdk-smarts-2.7.1.pom [INFO] [INFO] ------------------< org.openscience.cdk:cdk-reaction >------------------ [INFO] Building cdk-reaction 2.7.1 [27/75] [INFO] from base/reaction/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-reaction --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-reaction --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 53 source files to /construction/science/cdk/cdk-cdk-2.7.1/base/reaction/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-reaction --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-reaction --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-reaction --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-reaction --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/base/reaction/target/cdk-reaction-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-reaction --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/base/reaction/target/cdk-reaction-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-reaction/2.7.1/cdk-reaction-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/base/reaction/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-reaction/2.7.1/cdk-reaction-2.7.1.pom [INFO] [INFO] -----------------< org.openscience.cdk:cdk-descriptor >----------------- [INFO] Building cdk-descriptor 2.7.1 [28/75] [INFO] from descriptor/pom.xml [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-descriptor --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/descriptor/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-descriptor/2.7.1/cdk-descriptor-2.7.1.pom [INFO] [INFO] ----------------< org.openscience.cdk:cdk-fingerprint >----------------- [INFO] Building cdk-fingerprint 2.7.1 [29/75] [INFO] from descriptor/fingerprint/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-fingerprint --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-fingerprint --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 17 source files to /construction/science/cdk/cdk-cdk-2.7.1/descriptor/fingerprint/target/classes [INFO] /construction/science/cdk/cdk-cdk-2.7.1/descriptor/fingerprint/src/main/java/org/openscience/cdk/fingerprint/ShortestPathFingerprinter.java: /construction/science/cdk/cdk-cdk-2.7.1/descriptor/fingerprint/src/main/java/org/openscience/cdk/fingerprint/ShortestPathFingerprinter.java uses or overrides a deprecated API. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/descriptor/fingerprint/src/main/java/org/openscience/cdk/fingerprint/ShortestPathFingerprinter.java: Recompile with -Xlint:deprecation for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-fingerprint --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-fingerprint --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-fingerprint --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-fingerprint --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/descriptor/fingerprint/target/cdk-fingerprint-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-fingerprint --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/descriptor/fingerprint/target/cdk-fingerprint-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-fingerprint/2.7.1/cdk-fingerprint-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/descriptor/fingerprint/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-fingerprint/2.7.1/cdk-fingerprint-2.7.1.pom [INFO] [INFO] --------------------< org.openscience.cdk:cdk-cip >--------------------- [INFO] Building cdk-cip 2.7.1 [30/75] [INFO] from descriptor/cip/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-cip --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/descriptor/cip/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-cip --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 13 source files to /construction/science/cdk/cdk-cdk-2.7.1/descriptor/cip/target/classes [INFO] /construction/science/cdk/cdk-cdk-2.7.1/descriptor/cip/src/main/java/org/openscience/cdk/geometry/cip/ImmutableHydrogen.java: /construction/science/cdk/cdk-cdk-2.7.1/descriptor/cip/src/main/java/org/openscience/cdk/geometry/cip/ImmutableHydrogen.java uses or overrides a deprecated API. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/descriptor/cip/src/main/java/org/openscience/cdk/geometry/cip/ImmutableHydrogen.java: Recompile with -Xlint:deprecation for details. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/descriptor/cip/src/main/java/org/openscience/cdk/geometry/cip/ImmutableHydrogen.java: /construction/science/cdk/cdk-cdk-2.7.1/descriptor/cip/src/main/java/org/openscience/cdk/geometry/cip/ImmutableHydrogen.java uses unchecked or unsafe operations. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/descriptor/cip/src/main/java/org/openscience/cdk/geometry/cip/ImmutableHydrogen.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-cip --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-cip --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-cip --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-cip --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/descriptor/cip/target/cdk-cip-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-cip --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/descriptor/cip/target/cdk-cip-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-cip/2.7.1/cdk-cip-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/descriptor/cip/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-cip/2.7.1/cdk-cip-2.7.1.pom [INFO] [INFO] -----------------< org.openscience.cdk:cdk-signature >------------------ [INFO] Building cdk-signature 2.7.1 [31/75] [INFO] from descriptor/signature/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-signature --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/descriptor/signature/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-signature --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 6 source files to /construction/science/cdk/cdk-cdk-2.7.1/descriptor/signature/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-signature --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-signature --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-signature --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-signature --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/descriptor/signature/target/cdk-signature-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-signature --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/descriptor/signature/target/cdk-signature-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-signature/2.7.1/cdk-signature-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/descriptor/signature/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-signature/2.7.1/cdk-signature-2.7.1.pom [INFO] [INFO] ------------------< org.openscience.cdk:cdk-charges >------------------- [INFO] Building cdk-charges 2.7.1 [32/75] [INFO] from tool/charges/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-charges --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/tool/charges/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-charges --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 10 source files to /construction/science/cdk/cdk-cdk-2.7.1/tool/charges/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-charges --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-charges --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-charges --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-charges --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/tool/charges/target/cdk-charges-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-charges --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/tool/charges/target/cdk-charges-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-charges/2.7.1/cdk-charges-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/tool/charges/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-charges/2.7.1/cdk-charges-2.7.1.pom [INFO] [INFO] -----------------< org.openscience.cdk:cdk-forcefield >----------------- [INFO] Building cdk-forcefield 2.7.1 [33/75] [INFO] from tool/forcefield/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-forcefield --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 11 resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-forcefield --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 11 source files to /construction/science/cdk/cdk-cdk-2.7.1/tool/forcefield/target/classes [INFO] /construction/science/cdk/cdk-cdk-2.7.1/tool/forcefield/src/main/java/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java: Some input files use unchecked or unsafe operations. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/tool/forcefield/src/main/java/org/openscience/cdk/modeling/builder3d/MM2BasedParameterSetReader.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-forcefield --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-forcefield --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-forcefield --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-forcefield --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/tool/forcefield/target/cdk-forcefield-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-forcefield --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/tool/forcefield/target/cdk-forcefield-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-forcefield/2.7.1/cdk-forcefield-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/tool/forcefield/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-forcefield/2.7.1/cdk-forcefield-2.7.1.pom [INFO] [INFO] --------------------< org.openscience.cdk:cdk-sdg >--------------------- [INFO] Building cdk-sdg 2.7.1 [34/75] [INFO] from tool/sdg/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-sdg --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 9 resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-sdg --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 12 source files to /construction/science/cdk/cdk-cdk-2.7.1/tool/sdg/target/classes [INFO] /construction/science/cdk/cdk-cdk-2.7.1/tool/sdg/src/main/java/org/openscience/cdk/layout/RingPlacer.java: Some input files use unchecked or unsafe operations. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/tool/sdg/src/main/java/org/openscience/cdk/layout/RingPlacer.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-sdg --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-sdg --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-sdg --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-sdg --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/tool/sdg/target/cdk-sdg-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-sdg --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/tool/sdg/target/cdk-sdg-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-sdg/2.7.1/cdk-sdg-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/tool/sdg/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-sdg/2.7.1/cdk-sdg-2.7.1.pom [INFO] [INFO] ---------------< org.openscience.cdk:cdk-builder3dtools >--------------- [INFO] Building cdk-builder3dtools 2.7.1 [35/75] [INFO] from tool/builder3dtools/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-builder3dtools --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/tool/builder3dtools/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-builder3dtools --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1 source file to /construction/science/cdk/cdk-cdk-2.7.1/tool/builder3dtools/target/classes [INFO] /construction/science/cdk/cdk-cdk-2.7.1/tool/builder3dtools/src/main/java/org/openscience/cdk/modeling/builder3d/TemplateExtractor.java: /construction/science/cdk/cdk-cdk-2.7.1/tool/builder3dtools/src/main/java/org/openscience/cdk/modeling/builder3d/TemplateExtractor.java uses or overrides a deprecated API. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/tool/builder3dtools/src/main/java/org/openscience/cdk/modeling/builder3d/TemplateExtractor.java: Recompile with -Xlint:deprecation for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-builder3dtools --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-builder3dtools --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-builder3dtools --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-builder3dtools --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/tool/builder3dtools/target/cdk-builder3dtools-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-builder3dtools --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/tool/builder3dtools/target/cdk-builder3dtools-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-builder3dtools/2.7.1/cdk-builder3dtools-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/tool/builder3dtools/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-builder3dtools/2.7.1/cdk-builder3dtools-2.7.1.pom [INFO] [INFO] -----------------< org.openscience.cdk:cdk-builder3d >------------------ [INFO] Building cdk-builder3d 2.7.1 [36/75] [INFO] from tool/builder3d/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-builder3d --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-builder3d --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 4 source files to /construction/science/cdk/cdk-cdk-2.7.1/tool/builder3d/target/classes [INFO] /construction/science/cdk/cdk-cdk-2.7.1/tool/builder3d/src/main/java/org/openscience/cdk/modeling/builder3d/ModelBuilder3D.java: /construction/science/cdk/cdk-cdk-2.7.1/tool/builder3d/src/main/java/org/openscience/cdk/modeling/builder3d/ModelBuilder3D.java uses or overrides a deprecated API. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/tool/builder3d/src/main/java/org/openscience/cdk/modeling/builder3d/ModelBuilder3D.java: Recompile with -Xlint:deprecation for details. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/tool/builder3d/src/main/java/org/openscience/cdk/modeling/builder3d/AtomPlacer3D.java: Some input files use unchecked or unsafe operations. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/tool/builder3d/src/main/java/org/openscience/cdk/modeling/builder3d/AtomPlacer3D.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-builder3d --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-builder3d --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-builder3d --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-builder3d --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/tool/builder3d/target/cdk-builder3d-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-builder3d --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/tool/builder3d/target/cdk-builder3d-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-builder3d/2.7.1/cdk-builder3d-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/tool/builder3d/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-builder3d/2.7.1/cdk-builder3d-2.7.1.pom [INFO] [INFO] --------------------< org.openscience.cdk:cdk-qsar >-------------------- [INFO] Building cdk-qsar 2.7.1 [37/75] [INFO] from descriptor/qsar/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-qsar --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-qsar --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 11 source files to /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsar/target/classes [INFO] /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsar/src/main/java/org/openscience/cdk/qsar/AbstractAtomicDescriptor.java: Some input files use unchecked or unsafe operations. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsar/src/main/java/org/openscience/cdk/qsar/AbstractAtomicDescriptor.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-qsar --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-qsar --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-qsar --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-qsar --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsar/target/cdk-qsar-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-qsar --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsar/target/cdk-qsar-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-qsar/2.7.1/cdk-qsar-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsar/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-qsar/2.7.1/cdk-qsar-2.7.1.pom [INFO] [INFO] -------------------< org.openscience.cdk:cdk-ionpot >------------------- [INFO] Building cdk-ionpot 2.7.1 [38/75] [INFO] from descriptor/ionpot/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-ionpot --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/descriptor/ionpot/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-ionpot --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-ionpot --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-ionpot --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-ionpot --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-ionpot --- [WARNING] JAR will be empty - no content was marked for inclusion! [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/descriptor/ionpot/target/cdk-ionpot-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-ionpot --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/descriptor/ionpot/target/cdk-ionpot-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-ionpot/2.7.1/cdk-ionpot-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/descriptor/ionpot/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-ionpot/2.7.1/cdk-ionpot-2.7.1.pom [INFO] [INFO] -----------------< org.openscience.cdk:cdk-qsaratomic >----------------- [INFO] Building cdk-qsaratomic 2.7.1 [39/75] [INFO] from descriptor/qsaratomic/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-qsaratomic --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 5 resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-qsaratomic --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 29 source files to /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsaratomic/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-qsaratomic --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-qsaratomic --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-qsaratomic --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-qsaratomic --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsaratomic/target/cdk-qsaratomic-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-qsaratomic --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsaratomic/target/cdk-qsaratomic-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-qsaratomic/2.7.1/cdk-qsaratomic-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsaratomic/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-qsaratomic/2.7.1/cdk-qsaratomic-2.7.1.pom [INFO] [INFO] ------------------< org.openscience.cdk:cdk-qsarbond >------------------ [INFO] Building cdk-qsarbond 2.7.1 [40/75] [INFO] from descriptor/qsarbond/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-qsarbond --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-qsarbond --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 5 source files to /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsarbond/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-qsarbond --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-qsarbond --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-qsarbond --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-qsarbond --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsarbond/target/cdk-qsarbond-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-qsarbond --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsarbond/target/cdk-qsarbond-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-qsarbond/2.7.1/cdk-qsarbond-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsarbond/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-qsarbond/2.7.1/cdk-qsarbond-2.7.1.pom [INFO] [INFO] --------------------< org.openscience.cdk:cdk-hash >-------------------- [INFO] Building cdk-hash 2.7.1 [41/75] [INFO] from tool/hash/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-hash --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/tool/hash/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-hash --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 35 source files to /construction/science/cdk/cdk-cdk-2.7.1/tool/hash/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-hash --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-hash --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-hash --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-hash --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/tool/hash/target/cdk-hash-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-hash --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/tool/hash/target/cdk-hash-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-hash/2.7.1/cdk-hash-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/tool/hash/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-hash/2.7.1/cdk-hash-2.7.1.pom [INFO] [INFO] ------------------< org.openscience.cdk:cdk-fragment >------------------ [INFO] Building cdk-fragment 2.7.1 [42/75] [INFO] from tool/fragment/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-fragment --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/tool/fragment/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-fragment --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 4 source files to /construction/science/cdk/cdk-cdk-2.7.1/tool/fragment/target/classes [INFO] /construction/science/cdk/cdk-cdk-2.7.1/tool/fragment/src/main/java/org/openscience/cdk/fragment/MurckoFragmenter.java: Some input files use or override a deprecated API. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/tool/fragment/src/main/java/org/openscience/cdk/fragment/MurckoFragmenter.java: Recompile with -Xlint:deprecation for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-fragment --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-fragment --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-fragment --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-fragment --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/tool/fragment/target/cdk-fragment-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-fragment --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/tool/fragment/target/cdk-fragment-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-fragment/2.7.1/cdk-fragment-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/tool/fragment/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-fragment/2.7.1/cdk-fragment-2.7.1.pom [INFO] [INFO] -------------------< org.openscience.cdk:cdk-model >-------------------- [INFO] Building cdk-model 2.7.1 [43/75] [INFO] from tool/model/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-model --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/tool/model/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-model --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1 source file to /construction/science/cdk/cdk-cdk-2.7.1/tool/model/target/classes [INFO] /construction/science/cdk/cdk-cdk-2.7.1/tool/model/src/main/java/org/openscience/cdk/fingerprint/model/Bayesian.java: /construction/science/cdk/cdk-cdk-2.7.1/tool/model/src/main/java/org/openscience/cdk/fingerprint/model/Bayesian.java uses unchecked or unsafe operations. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/tool/model/src/main/java/org/openscience/cdk/fingerprint/model/Bayesian.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-model --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-model --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-model --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-model --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/tool/model/target/cdk-model-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-model --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/tool/model/target/cdk-model-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-model/2.7.1/cdk-model-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/tool/model/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-model/2.7.1/cdk-model-2.7.1.pom [INFO] [INFO] ---------------< org.openscience.cdk:cdk-qsarmolecular >---------------- [INFO] Building cdk-qsarmolecular 2.7.1 [44/75] [INFO] from descriptor/qsarmolecular/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-qsarmolecular --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-qsarmolecular --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 61 source files to /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsarmolecular/target/classes [INFO] /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsarmolecular/src/main/java/org/openscience/cdk/qsar/descriptors/molecular/MomentOfInertiaDescriptor.java: Some input files use or override a deprecated API. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsarmolecular/src/main/java/org/openscience/cdk/qsar/descriptors/molecular/MomentOfInertiaDescriptor.java: Recompile with -Xlint:deprecation for details. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsarmolecular/src/main/java/org/openscience/cdk/qsar/descriptors/molecular/ChiChainDescriptor.java: Some input files use unchecked or unsafe operations. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsarmolecular/src/main/java/org/openscience/cdk/qsar/descriptors/molecular/ChiChainDescriptor.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-qsarmolecular --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-qsarmolecular --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-qsarmolecular --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-qsarmolecular --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsarmolecular/target/cdk-qsarmolecular-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-qsarmolecular --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsarmolecular/target/cdk-qsarmolecular-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-qsarmolecular/2.7.1/cdk-qsarmolecular-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsarmolecular/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-qsarmolecular/2.7.1/cdk-qsarmolecular-2.7.1.pom [INFO] [INFO] ------------------< org.openscience.cdk:cdk-qsarcml >------------------- [INFO] Building cdk-qsarcml 2.7.1 [45/75] [INFO] from descriptor/qsarcml/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-qsarcml --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsarcml/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-qsarcml --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1 source file to /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsarcml/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-qsarcml --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-qsarcml --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-qsarcml --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-qsarcml --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsarcml/target/cdk-qsarcml-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-qsarcml --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsarcml/target/cdk-qsarcml-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-qsarcml/2.7.1/cdk-qsarcml-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsarcml/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-qsarcml/2.7.1/cdk-qsarcml-2.7.1.pom [INFO] [INFO] -----------------< org.openscience.cdk:cdk-qsarionpot >----------------- [INFO] Building cdk-qsarionpot 2.7.1 [46/75] [INFO] from descriptor/qsarionpot/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-qsarionpot --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsarionpot/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-qsarionpot --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-qsarionpot --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-qsarionpot --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-qsarionpot --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-qsarionpot --- [WARNING] JAR will be empty - no content was marked for inclusion! [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsarionpot/target/cdk-qsarionpot-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-qsarionpot --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsarionpot/target/cdk-qsarionpot-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-qsarionpot/2.7.1/cdk-qsarionpot-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsarionpot/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-qsarionpot/2.7.1/cdk-qsarionpot-2.7.1.pom [INFO] [INFO] ----------------< org.openscience.cdk:cdk-qsarprotein >----------------- [INFO] Building cdk-qsarprotein 2.7.1 [47/75] [INFO] from descriptor/qsarprotein/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-qsarprotein --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-qsarprotein --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 2 source files to /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsarprotein/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-qsarprotein --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-qsarprotein --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-qsarprotein --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-qsarprotein --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsarprotein/target/cdk-qsarprotein-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-qsarprotein --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsarprotein/target/cdk-qsarprotein-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-qsarprotein/2.7.1/cdk-qsarprotein-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsarprotein/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-qsarprotein/2.7.1/cdk-qsarprotein-2.7.1.pom [INFO] [INFO] ------------------< org.openscience.cdk:cdk-display >------------------- [INFO] Building cdk-display 2.7.1 [48/75] [INFO] from display/pom.xml [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-display --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/display/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-display/2.7.1/cdk-display-2.7.1.pom [INFO] [INFO] -------------------< org.openscience.cdk:cdk-render >------------------- [INFO] Building cdk-render 2.7.1 [49/75] [INFO] from display/render/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-render --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/display/render/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-render --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 20 source files to /construction/science/cdk/cdk-cdk-2.7.1/display/render/target/classes [INFO] /construction/science/cdk/cdk-cdk-2.7.1/display/render/src/main/java/org/openscience/cdk/renderer/RendererModel.java: /construction/science/cdk/cdk-cdk-2.7.1/display/render/src/main/java/org/openscience/cdk/renderer/RendererModel.java uses unchecked or unsafe operations. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/display/render/src/main/java/org/openscience/cdk/renderer/RendererModel.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-render --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-render --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-render --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-render --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/display/render/target/cdk-render-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-render --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/display/render/target/cdk-render-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-render/2.7.1/cdk-render-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/display/render/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-render/2.7.1/cdk-render-2.7.1.pom [INFO] [INFO] ----------------< org.openscience.cdk:cdk-renderbasic >----------------- [INFO] Building cdk-renderbasic 2.7.1 [50/75] [INFO] from display/renderbasic/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-renderbasic --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/display/renderbasic/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-renderbasic --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 45 source files to /construction/science/cdk/cdk-cdk-2.7.1/display/renderbasic/target/classes [INFO] /construction/science/cdk/cdk-cdk-2.7.1/display/renderbasic/src/main/java/org/openscience/cdk/renderer/elements/path/QuadTo.java: Some input files use or override a deprecated API. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/display/renderbasic/src/main/java/org/openscience/cdk/renderer/elements/path/QuadTo.java: Recompile with -Xlint:deprecation for details. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/display/renderbasic/src/main/java/org/openscience/cdk/renderer/generators/standard/StandardSgroupGenerator.java: /construction/science/cdk/cdk-cdk-2.7.1/display/renderbasic/src/main/java/org/openscience/cdk/renderer/generators/standard/StandardSgroupGenerator.java uses unchecked or unsafe operations. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/display/renderbasic/src/main/java/org/openscience/cdk/renderer/generators/standard/StandardSgroupGenerator.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-renderbasic --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-renderbasic --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-renderbasic --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-renderbasic --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/display/renderbasic/target/cdk-renderbasic-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-renderbasic --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/display/renderbasic/target/cdk-renderbasic-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-renderbasic/2.7.1/cdk-renderbasic-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/display/renderbasic/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-renderbasic/2.7.1/cdk-renderbasic-2.7.1.pom [INFO] [INFO] -----------------< org.openscience.cdk:cdk-renderawt >------------------ [INFO] Building cdk-renderawt 2.7.1 [51/75] [INFO] from display/renderawt/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-renderawt --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/display/renderawt/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-renderawt --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 2 source files to /construction/science/cdk/cdk-cdk-2.7.1/display/renderawt/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-renderawt --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-renderawt --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-renderawt --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-renderawt --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/display/renderawt/target/cdk-renderawt-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-renderawt --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/display/renderawt/target/cdk-renderawt-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-renderawt/2.7.1/cdk-renderawt-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/display/renderawt/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-renderawt/2.7.1/cdk-renderawt-2.7.1.pom [INFO] [INFO] ----------------< org.openscience.cdk:cdk-renderextra >----------------- [INFO] Building cdk-renderextra 2.7.1 [52/75] [INFO] from display/renderextra/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-renderextra --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/display/renderextra/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-renderextra --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 20 source files to /construction/science/cdk/cdk-cdk-2.7.1/display/renderextra/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-renderextra --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-renderextra --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-renderextra --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-renderextra --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/display/renderextra/target/cdk-renderextra-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-renderextra --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/display/renderextra/target/cdk-renderextra-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-renderextra/2.7.1/cdk-renderextra-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/display/renderextra/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-renderextra/2.7.1/cdk-renderextra-2.7.1.pom [INFO] [INFO] ------------------< org.openscience.cdk:cdk-control >------------------- [INFO] Building cdk-control 2.7.1 [53/75] [INFO] from misc/control/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-control --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/misc/control/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-control --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 5 source files to /construction/science/cdk/cdk-cdk-2.7.1/misc/control/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-control --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-control --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-control --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-control --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/misc/control/target/cdk-control-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-control --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/misc/control/target/cdk-control-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-control/2.7.1/cdk-control-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/misc/control/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-control/2.7.1/cdk-control-2.7.1.pom [INFO] [INFO] ---------------------< org.openscience.cdk:cdk-qm >--------------------- [INFO] Building cdk-qm 2.7.1 [54/75] [INFO] from misc/qm/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-qm --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/misc/qm/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-qm --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-qm --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-qm --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-qm --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-qm --- [WARNING] JAR will be empty - no content was marked for inclusion! [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/misc/qm/target/cdk-qm-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-qm --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/misc/qm/target/cdk-qm-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-qm/2.7.1/cdk-qm-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/misc/qm/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-qm/2.7.1/cdk-qm-2.7.1.pom [INFO] [INFO] -------------------< org.openscience.cdk:cdk-iordf >-------------------- [INFO] Building cdk-iordf 2.7.1 [55/75] [INFO] from storage/iordf/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-iordf --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/storage/iordf/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-iordf --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 4 source files to /construction/science/cdk/cdk-cdk-2.7.1/storage/iordf/target/classes [INFO] /construction/science/cdk/cdk-cdk-2.7.1/storage/iordf/src/main/java/org/openscience/cdk/libio/jena/Convertor.java: /construction/science/cdk/cdk-cdk-2.7.1/storage/iordf/src/main/java/org/openscience/cdk/libio/jena/Convertor.java uses or overrides a deprecated API. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/storage/iordf/src/main/java/org/openscience/cdk/libio/jena/Convertor.java: Recompile with -Xlint:deprecation for details. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/storage/iordf/src/main/java/org/openscience/cdk/io/rdf/CDKOWLWriter.java: Some input files use unchecked or unsafe operations. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/storage/iordf/src/main/java/org/openscience/cdk/io/rdf/CDKOWLWriter.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-iordf --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-iordf --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-iordf --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-iordf --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/storage/iordf/target/cdk-iordf-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-iordf --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/storage/iordf/target/cdk-iordf-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-iordf/2.7.1/cdk-iordf-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/storage/iordf/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-iordf/2.7.1/cdk-iordf-2.7.1.pom [INFO] [INFO] ------------------< org.openscience.cdk:cdk-libiomd >------------------- [INFO] Building cdk-libiomd 2.7.1 [56/75] [INFO] from storage/libiomd/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-libiomd --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/storage/libiomd/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-libiomd --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 5 source files to /construction/science/cdk/cdk-cdk-2.7.1/storage/libiomd/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-libiomd --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-libiomd --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-libiomd --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-libiomd --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/storage/libiomd/target/cdk-libiomd-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-libiomd --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/storage/libiomd/target/cdk-libiomd-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-libiomd/2.7.1/cdk-libiomd-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/storage/libiomd/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-libiomd/2.7.1/cdk-libiomd-2.7.1.pom [INFO] [INFO] -------------------< org.openscience.cdk:cdk-pdbcml >------------------- [INFO] Building cdk-pdbcml 2.7.1 [57/75] [INFO] from storage/pdbcml/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-pdbcml --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/storage/pdbcml/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-pdbcml --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1 source file to /construction/science/cdk/cdk-cdk-2.7.1/storage/pdbcml/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-pdbcml --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-pdbcml --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-pdbcml --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-pdbcml --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/storage/pdbcml/target/cdk-pdbcml-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-pdbcml --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/storage/pdbcml/target/cdk-pdbcml-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-pdbcml/2.7.1/cdk-pdbcml-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/storage/pdbcml/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-pdbcml/2.7.1/cdk-pdbcml-2.7.1.pom [INFO] [INFO] --------------< org.openscience.cdk:cdk-jniinchi-support >-------------- [INFO] Building cdk-jniinchi-support 2.7.1 [58/75] [INFO] from storage/jniinchi-support/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-jniinchi-support --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/storage/jniinchi-support/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-jniinchi-support --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 2 source files to /construction/science/cdk/cdk-cdk-2.7.1/storage/jniinchi-support/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-jniinchi-support --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-jniinchi-support --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-jniinchi-support --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-jniinchi-support --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/storage/jniinchi-support/target/cdk-jniinchi-support-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-jniinchi-support --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/storage/jniinchi-support/target/cdk-jniinchi-support-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-jniinchi-support/2.7.1/cdk-jniinchi-support-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/storage/jniinchi-support/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-jniinchi-support/2.7.1/cdk-jniinchi-support-2.7.1.pom [INFO] [INFO] -------------------< org.openscience.cdk:cdk-inchi >-------------------- [INFO] Building cdk-inchi 2.7.1 [59/75] [INFO] from storage/inchi/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-inchi --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/storage/inchi/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-inchi --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 6 source files to /construction/science/cdk/cdk-cdk-2.7.1/storage/inchi/target/classes [INFO] /construction/science/cdk/cdk-cdk-2.7.1/storage/inchi/src/main/java/org/openscience/cdk/graph/invariant/InChINumbersTools.java: /construction/science/cdk/cdk-cdk-2.7.1/storage/inchi/src/main/java/org/openscience/cdk/graph/invariant/InChINumbersTools.java uses or overrides a deprecated API. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/storage/inchi/src/main/java/org/openscience/cdk/graph/invariant/InChINumbersTools.java: Recompile with -Xlint:deprecation for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-inchi --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-inchi --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-inchi --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-inchi --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/storage/inchi/target/cdk-inchi-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-inchi --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/storage/inchi/target/cdk-inchi-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-inchi/2.7.1/cdk-inchi-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/storage/inchi/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-inchi/2.7.1/cdk-inchi-2.7.1.pom [INFO] [INFO] -------------------< org.openscience.cdk:cdk-group >-------------------- [INFO] Building cdk-group 2.7.1 [60/75] [INFO] from tool/group/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-group --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/tool/group/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-group --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 17 source files to /construction/science/cdk/cdk-cdk-2.7.1/tool/group/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-group --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-group --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-group --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-group --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/tool/group/target/cdk-group-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-group --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/tool/group/target/cdk-group-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-group/2.7.1/cdk-group-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/tool/group/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-group/2.7.1/cdk-group-2.7.1.pom [INFO] [INFO] -------------------< org.openscience.cdk:cdk-pcore >-------------------- [INFO] Building cdk-pcore 2.7.1 [61/75] [INFO] from tool/pcore/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-pcore --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/tool/pcore/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-pcore --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 9 source files to /construction/science/cdk/cdk-cdk-2.7.1/tool/pcore/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-pcore --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-pcore --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-pcore --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-pcore --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/tool/pcore/target/cdk-pcore-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-pcore --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/tool/pcore/target/cdk-pcore-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-pcore/2.7.1/cdk-pcore-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/tool/pcore/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-pcore/2.7.1/cdk-pcore-2.7.1.pom [INFO] [INFO] -----------------< org.openscience.cdk:cdk-structgen >------------------ [INFO] Building cdk-structgen 2.7.1 [62/75] [INFO] from tool/structgen/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-structgen --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/tool/structgen/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-structgen --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 10 source files to /construction/science/cdk/cdk-cdk-2.7.1/tool/structgen/target/classes [INFO] /construction/science/cdk/cdk-cdk-2.7.1/tool/structgen/src/main/java/org/openscience/cdk/structgen/RandomGenerator.java: Some input files use or override a deprecated API. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/tool/structgen/src/main/java/org/openscience/cdk/structgen/RandomGenerator.java: Recompile with -Xlint:deprecation for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-structgen --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-structgen --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-structgen --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-structgen --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/tool/structgen/target/cdk-structgen-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-structgen --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/tool/structgen/target/cdk-structgen-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-structgen/2.7.1/cdk-structgen-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/tool/structgen/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-structgen/2.7.1/cdk-structgen-2.7.1.pom [INFO] [INFO] ------------------< org.openscience.cdk:cdk-tautomer >------------------ [INFO] Building cdk-tautomer 2.7.1 [63/75] [INFO] from tool/tautomer/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-tautomer --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/tool/tautomer/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-tautomer --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1 source file to /construction/science/cdk/cdk-cdk-2.7.1/tool/tautomer/target/classes [INFO] /construction/science/cdk/cdk-cdk-2.7.1/tool/tautomer/src/main/java/org/openscience/cdk/tautomers/InChITautomerGenerator.java: /construction/science/cdk/cdk-cdk-2.7.1/tool/tautomer/src/main/java/org/openscience/cdk/tautomers/InChITautomerGenerator.java uses unchecked or unsafe operations. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/tool/tautomer/src/main/java/org/openscience/cdk/tautomers/InChITautomerGenerator.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-tautomer --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-tautomer --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-tautomer --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-tautomer --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/tool/tautomer/target/cdk-tautomer-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-tautomer --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/tool/tautomer/target/cdk-tautomer-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-tautomer/2.7.1/cdk-tautomer-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/tool/tautomer/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-tautomer/2.7.1/cdk-tautomer-2.7.1.pom [INFO] [INFO] -------------------< org.openscience.cdk:cdk-legacy >------------------- [INFO] Building cdk-legacy 2.7.1 [64/75] [INFO] from legacy/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- javacc-maven-plugin:2.6:javacc (javacc) @ cdk-legacy --- Java Compiler Compiler Version 5.0 (Parser Generator) (type "javacc" with no arguments for help) Reading from file /construction/science/cdk/cdk-cdk-2.7.1/legacy/src/main/javacc/org/openscience/cdk/iupac/parser/NomParser.jj . . . File "TokenMgrError.java" does not exist. Will create one. File "ParseException.java" does not exist. Will create one. File "Token.java" does not exist. Will create one. File "SimpleCharStream.java" does not exist. Will create one. Parser generated successfully. [INFO] Processed 1 grammar [INFO] [INFO] --- javacc-maven-plugin:2.6:jjtree-javacc (javacc) @ cdk-legacy --- Java Compiler Compiler Version 5.0 (Tree Builder) (type "jjtree" with no arguments for help) Reading from file /construction/science/cdk/cdk-cdk-2.7.1/legacy/src/main/jjtree/org/openscience/cdk/smiles/smarts/parser/SMARTSParser.jjt . . . File "Node.java" does not exist. Will create one. File "SimpleNode.java" does not exist. Will create one. File "ASTStart.java" does not exist. Will create one. File "ASTReaction.java" does not exist. Will create one. File "ASTGroup.java" does not exist. Will create one. File "ASTSmarts.java" does not exist. Will create one. File "ASTAtom.java" does not exist. Will create one. File "ASTLowAndBond.java" does not exist. Will create one. File "ASTOrBond.java" does not exist. Will create one. File "ASTExplicitHighAndBond.java" does not exist. Will create one. File "ASTImplicitHighAndBond.java" does not exist. Will create one. File "ASTNotBond.java" does not exist. Will create one. File "ASTSimpleBond.java" does not exist. Will create one. File "ASTExplicitAtom.java" does not exist. Will create one. File "ASTLowAndExpression.java" does not exist. Will create one. File "ASTOrExpression.java" does not exist. Will create one. File "ASTExplicitHighAndExpression.java" does not exist. Will create one. File "ASTImplicitHighAndExpression.java" does not exist. Will create one. File "ASTNotExpression.java" does not exist. Will create one. File "ASTRecursiveSmartsExpression.java" does not exist. Will create one. File "ASTTotalHCount.java" does not exist. Will create one. File "ASTImplicitHCount.java" does not exist. Will create one. File "ASTExplicitConnectivity.java" does not exist. Will create one. File "ASTAtomicNumber.java" does not exist. Will create one. File "ASTHybrdizationNumber.java" does not exist. Will create one. File "ASTCharge.java" does not exist. Will create one. File "ASTRingConnectivity.java" does not exist. Will create one. File "ASTPeriodicGroupNumber.java" does not exist. Will create one. File "ASTTotalConnectivity.java" does not exist. Will create one. File "ASTValence.java" does not exist. Will create one. File "ASTRingMembership.java" does not exist. Will create one. File "ASTSmallestRingSize.java" does not exist. Will create one. File "ASTAliphatic.java" does not exist. Will create one. File "ASTNonCHHeavyAtom.java" does not exist. Will create one. File "ASTAromatic.java" does not exist. Will create one. File "ASTAnyAtom.java" does not exist. Will create one. File "ASTAtomicMass.java" does not exist. Will create one. File "ASTRingIdentifier.java" does not exist. Will create one. File "ASTChirality.java" does not exist. Will create one. File "ASTElement.java" does not exist. Will create one. File "SMARTSParserTreeConstants.java" does not exist. Will create one. File "SMARTSParserVisitor.java" does not exist. Will create one. File "JJTSMARTSParserState.java" does not exist. Will create one. Annotated grammar generated successfully in /construction/science/cdk/cdk-cdk-2.7.1/legacy/target/javacc-1690830428339/node/SMARTSParser.jj Java Compiler Compiler Version 5.0 (Parser Generator) (type "javacc" with no arguments for help) Reading from file /construction/science/cdk/cdk-cdk-2.7.1/legacy/target/javacc-1690830428339/node/SMARTSParser.jj . . . File "TokenMgrError.java" does not exist. Will create one. File "ParseException.java" does not exist. Will create one. File "Token.java" does not exist. Will create one. File "SimpleCharStream.java" does not exist. Will create one. Parser generated successfully. [INFO] Processed 1 grammar [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-legacy --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 6 resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-legacy --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 238 source files to /construction/science/cdk/cdk-cdk-2.7.1/legacy/target/classes [INFO] /construction/science/cdk/cdk-cdk-2.7.1/legacy/src/main/java/org/openscience/cdk/smsd/algorithm/mcsplus/MCSPlusHandler.java: Some input files use or override a deprecated API. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/legacy/src/main/java/org/openscience/cdk/smsd/algorithm/mcsplus/MCSPlusHandler.java: Recompile with -Xlint:deprecation for details. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/legacy/src/main/java/org/openscience/cdk/ringsearch/cyclebasis/CycleBasis.java: Some input files use unchecked or unsafe operations. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/legacy/src/main/java/org/openscience/cdk/ringsearch/cyclebasis/CycleBasis.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-legacy --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-legacy --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-legacy --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-legacy --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/legacy/target/cdk-legacy-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-legacy --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/legacy/target/cdk-legacy-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-legacy/2.7.1/cdk-legacy-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/legacy/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-legacy/2.7.1/cdk-legacy-2.7.1.pom [INFO] [INFO] --------------------< org.openscience.cdk:cdk-app >--------------------- [INFO] Building cdk-app 2.7.1 [65/75] [INFO] from app/pom.xml [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-app --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/app/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-app/2.7.1/cdk-app-2.7.1.pom [INFO] [INFO] -------------------< org.openscience.cdk:cdk-depict >------------------- [INFO] Building cdk-depict 2.7.1 [66/75] [INFO] from app/depict/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-depict --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-depict --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 8 source files to /construction/science/cdk/cdk-cdk-2.7.1/app/depict/target/classes [INFO] /construction/science/cdk/cdk-cdk-2.7.1/app/depict/src/main/java/org/openscience/cdk/depict/DepictionGenerator.java: /construction/science/cdk/cdk-cdk-2.7.1/app/depict/src/main/java/org/openscience/cdk/depict/DepictionGenerator.java uses unchecked or unsafe operations. [INFO] /construction/science/cdk/cdk-cdk-2.7.1/app/depict/src/main/java/org/openscience/cdk/depict/DepictionGenerator.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-depict --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-depict --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-depict --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-depict --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/app/depict/target/cdk-depict-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-depict --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/app/depict/target/cdk-depict-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-depict/2.7.1/cdk-depict-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/app/depict/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-depict/2.7.1/cdk-depict-2.7.1.pom [INFO] [INFO] -------------------< org.openscience.cdk:cdk-bundle >------------------- [INFO] Building cdk-bundle 2.7.1 [67/75] [INFO] from bundle/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-bundle --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/bundle/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:2.3.2:compile (default-compile) @ cdk-bundle --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-bundle --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:2.3.2:testCompile (default-testCompile) @ cdk-bundle --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-bundle --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-bundle --- [WARNING] JAR will be empty - no content was marked for inclusion! [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/bundle/target/cdk-bundle-2.7.1.jar [INFO] [INFO] --- maven-shade-plugin:2.2:shade (default) @ cdk-bundle --- [INFO] Including org.openscience.cdk:cdk-interfaces:jar:2.7.1 in the shaded jar. [INFO] Including javax.vecmath:vecmath:jar:1.5.2 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-core:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-standard:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-atomtype:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-valencycheck:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-diff:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-data:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-ioformats:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-silent:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-isomorphism:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-datadebug:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-io:jar:2.7.1 in the shaded jar. [INFO] Including xerces:xercesImpl:jar:2.8.0 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-formula:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-dict:jar:2.7.1 in the shaded jar. [INFO] Including xom:xom:jar:1.3.7 in the shaded jar. [INFO] Including xalan:xalan:jar:2.7.2 in the shaded jar. [INFO] Including xalan:serializer:jar:2.7.2 in the shaded jar. [INFO] Including xml-apis:xml-apis:jar:1.3.03 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-pdb:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-ctab:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-libiocml:jar:2.7.1 in the shaded jar. [INFO] Including org.blueobelisk:cmlxom:jar:4.0 in the shaded jar. [INFO] Including org.blueobelisk:euclid:jar:2.0 in the shaded jar. [INFO] Including commons-io:commons-io:jar:2.11.0 in the shaded jar. [INFO] Including org.apache.logging.log4j:log4j-1.2-api:jar:2.17.1 in the shaded jar. [INFO] Including org.apache.logging.log4j:log4j-api:jar:2.17.1 in the shaded jar. [INFO] Including org.apache.commons:commons-lang3:jar:3.0 in the shaded jar. [INFO] Including org.apache.commons:commons-math:jar:2.2 in the shaded jar. [INFO] Including joda-time:joda-time:jar:1.6.2 in the shaded jar. [INFO] Including org.ccil.cowan.tagsoup:tagsoup:jar:1.2 in the shaded jar. [INFO] Including junit:junit:jar:4.13.2 in the shaded jar. [INFO] Including org.hamcrest:hamcrest-core:jar:2.2 in the shaded jar. [INFO] Including org.hamcrest:hamcrest:jar:2.2 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-smiles:jar:2.7.1 in the shaded jar. [INFO] Including uk.ac.ebi.beam:beam-core:jar:1.3.4 in the shaded jar. [INFO] Including uk.ac.ebi.beam:beam-func:jar:1.3.4 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-extra:jar:2.7.1 in the shaded jar. [INFO] Including gov.nist.math:jama:jar:1.0.3 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-smarts:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-reaction:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-fingerprint:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-cip:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-signature:jar:2.7.1 in the shaded jar. [INFO] Including com.github.gilleain.signatures:signatures:jar:1.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-charges:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-forcefield:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-sdg:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-builder3dtools:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-builder3d:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-qsar:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-ionpot:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-qsaratomic:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-qsarbond:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-hash:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-fragment:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-model:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-qsarmolecular:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-qsarcml:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-qsarionpot:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-qsarprotein:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-render:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-renderbasic:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-renderawt:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-renderextra:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-control:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-qm:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-iordf:jar:2.7.1 in the shaded jar. [INFO] Including org.apache.jena:jena-core:jar:2.7.4 in the shaded jar. [INFO] Including org.apache.jena:jena-iri:jar:0.9.4 in the shaded jar. [INFO] Including org.slf4j:slf4j-api:jar:1.6.4 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-libiomd:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-pdbcml:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-inchi:jar:2.7.1 in the shaded jar. [INFO] Including io.github.dan2097:jna-inchi-api:jar:1.0.1 in the shaded jar. [INFO] Including net.java.dev.jna:jna:jar:5.10.0 in the shaded jar. [INFO] Including io.github.dan2097:jna-inchi-core:jar:1.0.1 in the shaded jar. [INFO] Including io.github.dan2097:jna-inchi-darwin-aarch64:jar:1.0.1 in the shaded jar. [INFO] Including io.github.dan2097:jna-inchi-darwin-x86-64:jar:1.0.1 in the shaded jar. [INFO] Including io.github.dan2097:jna-inchi-linux-arm:jar:1.0.1 in the shaded jar. [INFO] Including io.github.dan2097:jna-inchi-linux-x86:jar:1.0.1 in the shaded jar. [INFO] Including io.github.dan2097:jna-inchi-linux-x86-64:jar:1.0.1 in the shaded jar. [INFO] Including io.github.dan2097:jna-inchi-win32-x86:jar:1.0.1 in the shaded jar. [INFO] Including io.github.dan2097:jna-inchi-win32-x86-64:jar:1.0.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-jniinchi-support:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-group:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-pcore:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-structgen:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-tautomer:jar:2.7.1 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-legacy:jar:2.7.1 in the shaded jar. [INFO] Including jgrapht:jgrapht:jar:0.6.0 in the shaded jar. [INFO] Including org.openscience.cdk:cdk-depict:jar:2.7.1 in the shaded jar. [INFO] Including org.freehep:freehep-graphicsio-pdf:jar:2.4 in the shaded jar. [INFO] Including org.freehep:freehep-graphics2d:jar:2.4 in the shaded jar. [INFO] Including org.freehep:freehep-graphicsio:jar:2.4 in the shaded jar. [INFO] Including org.freehep:freehep-io:jar:2.2.2 in the shaded jar. [INFO] Including org.freehep:freehep-graphicsio-tests:jar:2.4 in the shaded jar. [INFO] Including org.freehep:freehep-graphicsbase:jar:2.4 in the shaded jar. [INFO] Including org.freehep:freehep-graphicsio-ps:jar:2.4 in the shaded jar. [INFO] Replacing /construction/science/cdk/cdk-cdk-2.7.1/bundle/target/cdk-2.7.1.jar with /construction/science/cdk/cdk-cdk-2.7.1/bundle/target/cdk-bundle-2.7.1-shaded.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-bundle --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/bundle/target/cdk-bundle-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-bundle/2.7.1/cdk-bundle-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/bundle/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-bundle/2.7.1/cdk-bundle-2.7.1.pom [INFO] [INFO] -----------------< org.openscience.cdk:cdk-annotation >----------------- [INFO] Building cdk-annotation 2.7.1 [68/75] [INFO] from base/annotation/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-annotation --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/base/annotation/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-annotation --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-annotation --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-annotation --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.16:test (default-test) @ cdk-annotation --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-annotation --- [WARNING] JAR will be empty - no content was marked for inclusion! [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/base/annotation/target/cdk-annotation-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-annotation --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/base/annotation/target/cdk-annotation-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-annotation/2.7.1/cdk-annotation-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/base/annotation/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-annotation/2.7.1/cdk-annotation-2.7.1.pom [INFO] [INFO] ---------------< org.openscience.cdk:cdk-test-atomtype >---------------- [INFO] Building cdk-test-atomtype 2.7.1 [69/75] [INFO] from base/test-atomtype/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-test-atomtype --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/base/test-atomtype/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-test-atomtype --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-test-atomtype --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-test-atomtype --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-test-atomtype --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-test-atomtype --- [WARNING] JAR will be empty - no content was marked for inclusion! [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/base/test-atomtype/target/cdk-test-atomtype-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-test-atomtype --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/base/test-atomtype/target/cdk-test-atomtype-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-test-atomtype/2.7.1/cdk-test-atomtype-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/base/test-atomtype/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-test-atomtype/2.7.1/cdk-test-atomtype-2.7.1.pom [INFO] [INFO] -------------------< org.openscience.cdk:cdk-log4j >-------------------- [INFO] Building cdk-log4j 2.7.1 [70/75] [INFO] from misc/log4j/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-log4j --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-log4j --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1 source file to /construction/science/cdk/cdk-cdk-2.7.1/misc/log4j/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-log4j --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-log4j --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-log4j --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-log4j --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/misc/log4j/target/cdk-log4j-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-log4j --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/misc/log4j/target/cdk-log4j-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-log4j/2.7.1/cdk-log4j-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/misc/log4j/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-log4j/2.7.1/cdk-log4j-2.7.1.pom [INFO] [INFO] -----------------< org.openscience.cdk:cdk-test-core >------------------ [INFO] Building cdk-test-core 2.7.1 [71/75] [INFO] from base/test-core/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-test-core --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/base/test-core/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-test-core --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-test-core --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-test-core --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-test-core --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-test-core --- [WARNING] JAR will be empty - no content was marked for inclusion! [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/base/test-core/target/cdk-test-core-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-test-core --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/base/test-core/target/cdk-test-core-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-test-core/2.7.1/cdk-test-core-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/base/test-core/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-test-core/2.7.1/cdk-test-core-2.7.1.pom [INFO] [INFO] ---------------< org.openscience.cdk:cdk-test-standard >---------------- [INFO] Building cdk-test-standard 2.7.1 [72/75] [INFO] from base/test-standard/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-test-standard --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/base/test-standard/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-test-standard --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-test-standard --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-test-standard --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-test-standard --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-test-standard --- [WARNING] JAR will be empty - no content was marked for inclusion! [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/base/test-standard/target/cdk-test-standard-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-test-standard --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/base/test-standard/target/cdk-test-standard-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-test-standard/2.7.1/cdk-test-standard-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/base/test-standard/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-test-standard/2.7.1/cdk-test-standard-2.7.1.pom [INFO] [INFO] -------------< org.openscience.cdk:cdk-test-valencycheck >-------------- [INFO] Building cdk-test-valencycheck 2.7.1 [73/75] [INFO] from base/test-valencycheck/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-test-valencycheck --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/base/test-valencycheck/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-test-valencycheck --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-test-valencycheck --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-test-valencycheck --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-test-valencycheck --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-test-valencycheck --- [WARNING] JAR will be empty - no content was marked for inclusion! [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/base/test-valencycheck/target/cdk-test-valencycheck-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-test-valencycheck --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/base/test-valencycheck/target/cdk-test-valencycheck-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-test-valencycheck/2.7.1/cdk-test-valencycheck-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/base/test-valencycheck/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-test-valencycheck/2.7.1/cdk-test-valencycheck-2.7.1.pom [INFO] [INFO] ---------------< org.openscience.cdk:cdk-qsarsubstance >---------------- [INFO] Building cdk-qsarsubstance 2.7.1 [74/75] [INFO] from descriptor/qsarsubstance/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-qsarsubstance --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsarsubstance/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-qsarsubstance --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 2 source files to /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsarsubstance/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-qsarsubstance --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-qsarsubstance --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-qsarsubstance --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-qsarsubstance --- [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsarsubstance/target/cdk-qsarsubstance-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-qsarsubstance --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsarsubstance/target/cdk-qsarsubstance-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-qsarsubstance/2.7.1/cdk-qsarsubstance-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/descriptor/qsarsubstance/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-qsarsubstance/2.7.1/cdk-qsarsubstance-2.7.1.pom [INFO] [INFO] -----------------< org.openscience.cdk:cdk-test-extra >----------------- [INFO] Building cdk-test-extra 2.7.1 [75/75] [INFO] from misc/test-extra/pom.xml [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cdk-test-extra --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /construction/science/cdk/cdk-cdk-2.7.1/misc/test-extra/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ cdk-test-extra --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cdk-test-extra --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ cdk-test-extra --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ cdk-test-extra --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ cdk-test-extra --- [WARNING] JAR will be empty - no content was marked for inclusion! [INFO] Building jar: /construction/science/cdk/cdk-cdk-2.7.1/misc/test-extra/target/cdk-test-extra-2.7.1.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cdk-test-extra --- [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/misc/test-extra/target/cdk-test-extra-2.7.1.jar to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-test-extra/2.7.1/cdk-test-extra-2.7.1.jar [INFO] Installing /construction/science/cdk/cdk-cdk-2.7.1/misc/test-extra/pom.xml to /construction/science/cdk/.m2/repository/org/openscience/cdk/cdk-test-extra/2.7.1/cdk-test-extra-2.7.1.pom [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for cdk 2.7.1: [INFO] [INFO] cdk ................................................ SUCCESS [ 0.448 s] [INFO] cdk-base ........................................... SUCCESS [ 0.011 s] [INFO] cdk-interfaces ..................................... SUCCESS [ 6.219 s] [INFO] cdk-core ........................................... SUCCESS [ 5.991 s] [INFO] cdk-standard ....................................... SUCCESS [ 3.766 s] [INFO] cdk-atomtype ....................................... SUCCESS [ 0.494 s] [INFO] cdk-valencycheck ................................... SUCCESS [ 0.377 s] [INFO] cdk-misc ........................................... SUCCESS [ 0.004 s] [INFO] cdk-diff ........................................... SUCCESS [ 1.333 s] [INFO] cdk-test ........................................... SUCCESS [ 3.384 s] [INFO] cdk-data ........................................... SUCCESS [ 1.742 s] [INFO] cdk-storage ........................................ SUCCESS [ 0.015 s] [INFO] cdk-ioformats ...................................... SUCCESS [ 0.904 s] [INFO] cdk-silent ......................................... SUCCESS [ 1.282 s] [INFO] cdk-isomorphism .................................... SUCCESS [ 1.066 s] [INFO] cdk-datadebug ...................................... SUCCESS [ 1.971 s] [INFO] cdk-ctab ........................................... SUCCESS [ 1.163 s] [INFO] cdk-io ............................................. SUCCESS [ 1.231 s] [INFO] cdk-tool ........................................... SUCCESS [ 0.005 s] [INFO] cdk-formula ........................................ SUCCESS [ 0.640 s] [INFO] cdk-dict ........................................... SUCCESS [ 0.314 s] [INFO] cdk-pdb ............................................ SUCCESS [ 0.522 s] [INFO] cdk-libiocml ....................................... SUCCESS [ 0.492 s] [INFO] cdk-smiles ......................................... SUCCESS [ 1.269 s] [INFO] cdk-extra .......................................... SUCCESS [ 1.108 s] [INFO] cdk-smarts ......................................... SUCCESS [ 0.417 s] [INFO] cdk-reaction ....................................... SUCCESS [ 0.880 s] [INFO] cdk-descriptor ..................................... SUCCESS [ 0.005 s] [INFO] cdk-fingerprint .................................... SUCCESS [ 1.248 s] [INFO] cdk-cip ............................................ SUCCESS [ 0.361 s] [INFO] cdk-signature ...................................... SUCCESS [ 0.294 s] [INFO] cdk-charges ........................................ SUCCESS [ 0.439 s] [INFO] cdk-forcefield ..................................... SUCCESS [ 1.005 s] [INFO] cdk-sdg ............................................ SUCCESS [ 0.943 s] [INFO] cdk-builder3dtools ................................. SUCCESS [ 0.109 s] [INFO] cdk-builder3d ...................................... SUCCESS [ 0.535 s] [INFO] cdk-qsar ........................................... SUCCESS [ 0.185 s] [INFO] cdk-ionpot ......................................... SUCCESS [ 0.038 s] [INFO] cdk-qsaratomic ..................................... SUCCESS [ 0.411 s] [INFO] cdk-qsarbond ....................................... SUCCESS [ 0.137 s] [INFO] cdk-hash ........................................... SUCCESS [ 0.234 s] [INFO] cdk-fragment ....................................... SUCCESS [ 0.097 s] [INFO] cdk-model .......................................... SUCCESS [ 0.079 s] [INFO] cdk-qsarmolecular .................................. SUCCESS [ 0.865 s] [INFO] cdk-qsarcml ........................................ SUCCESS [ 0.124 s] [INFO] cdk-qsarionpot ..................................... SUCCESS [ 0.075 s] [INFO] cdk-qsarprotein .................................... SUCCESS [ 0.150 s] [INFO] cdk-display ........................................ SUCCESS [ 0.030 s] [INFO] cdk-render ......................................... SUCCESS [ 0.441 s] [INFO] cdk-renderbasic .................................... SUCCESS [ 0.987 s] [INFO] cdk-renderawt ...................................... SUCCESS [ 0.095 s] [INFO] cdk-renderextra .................................... SUCCESS [ 0.238 s] [INFO] cdk-control ........................................ SUCCESS [ 0.098 s] [INFO] cdk-qm ............................................. SUCCESS [ 0.033 s] [INFO] cdk-iordf .......................................... SUCCESS [ 0.117 s] [INFO] cdk-libiomd ........................................ SUCCESS [ 0.173 s] [INFO] cdk-pdbcml ......................................... SUCCESS [ 0.196 s] [INFO] cdk-jniinchi-support ............................... SUCCESS [ 0.079 s] [INFO] cdk-inchi .......................................... SUCCESS [ 0.244 s] [INFO] cdk-group .......................................... SUCCESS [ 0.371 s] [INFO] cdk-pcore .......................................... SUCCESS [ 0.273 s] [INFO] cdk-structgen ...................................... SUCCESS [ 0.332 s] [INFO] cdk-tautomer ....................................... SUCCESS [ 0.240 s] [INFO] cdk-legacy ......................................... SUCCESS [ 3.399 s] [INFO] cdk-app ............................................ SUCCESS [ 0.003 s] [INFO] cdk-depict ......................................... SUCCESS [ 0.521 s] [INFO] cdk-bundle ......................................... SUCCESS [ 8.012 s] [INFO] cdk-annotation ..................................... SUCCESS [ 0.038 s] [INFO] cdk-test-atomtype .................................. SUCCESS [ 0.105 s] [INFO] cdk-log4j .......................................... SUCCESS [ 0.338 s] [INFO] cdk-test-core ...................................... SUCCESS [ 0.030 s] [INFO] cdk-test-standard .................................. SUCCESS [ 0.085 s] [INFO] cdk-test-valencycheck .............................. SUCCESS [ 0.102 s] [INFO] cdk-qsarsubstance .................................. SUCCESS [ 0.099 s] [INFO] cdk-test-extra ..................................... SUCCESS [ 0.066 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 01:02 min [INFO] Finished at: 2023-07-31T19:07:20Z [INFO] ------------------------------------------------------------------------ SUCCEEDED 00:01:06 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> cdk-chemistry-2.7.1 depends on file: /usr/local/openjdk17/bin/java - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for cdk-chemistry-2.7.1 ===> cdk-chemistry-2.7.1 depends on file: /usr/local/openjdk17/bin/java - found ===> Generating temporary packing list install -m 0644 /construction/science/cdk/cdk-cdk-2.7.1/bundle/target/cdk-2.7.1.jar /construction/science/cdk/stage/usr/local/share/java/classes/cdk-2.7.1.jar ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for cdk-chemistry-2.7.1 file sizes/checksums [1]: 0% file sizes/checksums [1]: 100% Service unavailablepacking files [1]: 0% packing files [1]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:02 TOTAL TIME 00:01:35