------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 UNAME_r=6.5 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- ===> The following configuration options are available for cardioid-g20211026_1: MFEM=off: Build with MFEM mesh library OPENMP=on: Parallel processing support via OpenMP ====> MPI (Message Passing Interface) support: you have to select exactly one of them NOMPI=off: Build without parallel processing support MPICH=on: Parallel processing support via MPICH 3 OPENMPI=off: Parallel processing support via Open MPI ===> Use 'make config' to modify these settings SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/science/cardioid XDG_CONFIG_HOME=/construction/science/cardioid XDG_CACHE_HOME=/construction/science/cardioid/.cache HOME=/construction/science/cardioid TMPDIR="/tmp" PATH=/construction/science/cardioid/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/science/cardioid/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/science/cardioid XDG_CONFIG_HOME=/construction/science/cardioid XDG_CACHE_HOME=/construction/science/cardioid/.cache HOME=/construction/science/cardioid TMPDIR="/tmp" PATH=/construction/science/cardioid/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/science/cardioid/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/science/cardioid/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- MFEM="@comment " NO_MFEM="" MPICH="" NO_MPICH="@comment " NOMPI="@comment " NO_NOMPI="" OPENMP="" NO_OPENMP="@comment " OPENMPI="@comment " NO_OPENMPI="" CMAKE_BUILD_TYPE="release" OSREL=6.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/cardioid" EXAMPLESDIR="share/examples/cardioid" DATADIR="share/cardioid" WWWDIR="www/cardioid" ETCDIR="etc/cardioid" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- MFEM="@comment " NO_MFEM="" MPICH="" NO_MPICH="@comment " NOMPI="@comment " NO_NOMPI="" OPENMP="" NO_OPENMP="@comment " OPENMPI="@comment " NO_OPENMPI="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/cardioid DOCSDIR=/usr/local/share/doc/cardioid EXAMPLESDIR=/usr/local/share/examples/cardioid WWWDIR=/usr/local/www/cardioid ETCDIR=/usr/local/etc/cardioid SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes DFLY_STING_XFAIL=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_COMPRESSION_FORMAT=.tgz DEVELOPER=1 WITH_CCACHE_BUILD=yes CCACHE_DIR=/ccache UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600503 OSVERSION=9999999 OSREL=6.5 _OSRELEASE=6.5-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=13 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/expat-2.5.0.pkg Installing /packages/All/libuv-1.46.0.pkg Installing /packages/All/indexinfo-0.3.1.pkg Installing /packages/All/gettext-runtime-0.21.1.pkg Installing /packages/All/openssl-1.1.1u,1.pkg Installing /packages/All/rhash-1.4.3.pkg Installing /packages/All/pkg-1.19.2.pkg Installing /packages/All/liblz4-1.9.4,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/zstd-1.5.5.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libarchive-3.6.2,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/ncurses-6.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from ncurses-6.4: -- To get the terminfo database please install the terminfo-db package: pkg install terminfo-db Installing /packages/All/cmake-core-3.26.1_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/ccache-3.7.12_4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc create symlink for gcc (world) create symlink for g++ create symlink for g++ (world) ===== Message from ccache-3.7.12_4: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. Installing /packages/All/gmp-6.2.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/mpfr-4.2.0_1,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/mpc-1.3.1_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/binutils-2.40_4,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/gcc12-12.2.0_6.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required create symlink for gcc12 create symlink for gcc12 (world) create symlink for g++12 create symlink for g++12 (world) create symlink for cpp12 create symlink for cpp12 (world) ===== Message from gcc12-12.2.0_6: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc12 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/blas-3.11.0_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/lapack-3.11.0_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libpciaccess-0.17.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/level-zero-1.12.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/readline-8.2.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libxml2-2.10.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/hwloc2-2.8.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/json-c-0.16.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libsysinfo-0.0.3_2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libgpg-error-1.47.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libgcrypt-1.10.2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/munge-0.5.15.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libaec-1.0.6.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/hdf5-1.12.2_2,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libedit-3.1.20221030,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/lua54-5.4.6.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/slurm-wlm-20.02.7_3.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===> Creating groups. Creating group 'slurm' with gid '468'. ===> Creating users Creating user 'slurm' with uid '468'. ===== Message from slurm-wlm-20.02.7_3: -- ===> NOTICE: The slurm-wlm port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing Installing /packages/All/libepoll-shim-0.0.20230411.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/bash-5.2.15.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/perl5-5.32.1_3.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/mpich-3.4.3_2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from mpich-3.4.3_2: -- ===> NOTICE: The mpich port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:49 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> cardioid-g20211026_1 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> cardioid-g20211026_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by cardioid-g20211026_1 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> cardioid-g20211026_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by cardioid-g20211026_1 for building => SHA256 Checksum OK for LLNL-cardioid-g20211026-2f66d9f_GH0.tar.gz. => SHA256 Checksum OK for mfem-mfem-v4.4_GH0.tar.gz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> cardioid-g20211026_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by cardioid-g20211026_1 for building ===> Extracting for cardioid-g20211026_1 => SHA256 Checksum OK for LLNL-cardioid-g20211026-2f66d9f_GH0.tar.gz. => SHA256 Checksum OK for mfem-mfem-v4.4_GH0.tar.gz. Extracted Memory Use: 43.68M SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for cardioid-g20211026_1 ===> Applying ports patches for cardioid-g20211026_1 from /xports/science/cardioid/files SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> cardioid-g20211026_1 depends on file: /usr/local/bin/cmake - found ===> cardioid-g20211026_1 depends on file: /usr/local/bin/ccache - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> cardioid-g20211026_1 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so) ===> cardioid-g20211026_1 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so) ===> cardioid-g20211026_1 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> cardioid-g20211026_1 depends on file: /usr/local/bin/cmake - found ===> cardioid-g20211026_1 depends on file: /usr/local/bin/ccache - found ===> cardioid-g20211026_1 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so) ===> cardioid-g20211026_1 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so) ===> cardioid-g20211026_1 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so) ===> Configuring for cardioid-g20211026_1 ===> Performing out-of-source build /bin/mkdir -p /construction/science/cardioid/.build CMake Warning (dev) at CMakeLists.txt:32 (project): cmake_minimum_required() should be called prior to this top-level project() call. Please see the cmake-commands(7) manual for usage documentation of both commands. This warning is for project developers. Use -Wno-dev to suppress it. -- The C compiler identification is GNU 8.3.0 -- The CXX compiler identification is GNU 8.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/libexec/ccache/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Git (missing: GIT_EXECUTABLE) -- Git Support is OFF -- MPI Support is ON -- Found MPI_C: /usr/local/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/local/lib/libmpicxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- MPI C Compile Flags: -- MPI C Include Path: /usr/local/include/json-c;/usr/local/include -- MPI C Link Flags: -Wl,-rpath=/usr/local/lib/gcc12 -Wl,-rpath -Wl,/usr/local/lib -L/usr/local/lib/gcc12 -- MPI C Libraries: /usr/local/lib/libmpi.so -- MPI CXX Compile Flags: -- MPI CXX Include Path: /usr/local/include -- MPI CXX Link Flags: -Wl,-rpath=/usr/local/lib/gcc12 -Wl,-rpath -Wl,/usr/local/lib -L/usr/local/lib/gcc12 -- MPI CXX Libraries: /usr/local/lib/libmpicxx.so;/usr/local/lib/libmpi.so -- MPI Executable: /usr/local/bin/mpiexec -- MPI Num Proc Flag: -n -- MPI Command Append: CMake Warning (dev) at blt/cmake/BLTMacros.cmake:314 (set): implicitly converting 'LIST' to 'STRING' type. Call Stack (most recent call first): blt/cmake/thirdparty/SetupMPI.cmake:93 (blt_register_library) blt/cmake/thirdparty/SetupThirdParty.cmake:69 (include) blt/SetupBLT.cmake:107 (include) CMakeLists.txt:48 (include) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at blt/cmake/BLTMacros.cmake:331 (set): implicitly converting 'LIST' to 'STRING' type. Call Stack (most recent call first): blt/cmake/thirdparty/SetupMPI.cmake:93 (blt_register_library) blt/cmake/thirdparty/SetupThirdParty.cmake:69 (include) blt/SetupBLT.cmake:107 (include) CMakeLists.txt:48 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- CUDA Support is OFF -- ROCM Support is OFF -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Sphinx support is ON -- Failed to locate Sphinx executable (missing: SPHINX_EXECUTABLE) -- Valgrind support is ON -- Failed to locate Valgrind executable (missing: VALGRIND_EXECUTABLE) -- Uncrustify support is ON -- Failed to locate Uncrustify executable (missing: UNCRUSTIFY_EXECUTABLE) -- Cppcheck support is ON -- Failed to locate Cppcheck executable (missing: CPPCHECK_EXECUTABLE) CMake Warning (dev) at blt/SetupBLT.cmake:170 (set): implicitly converting 'LIST' to 'STRING' type. Call Stack (most recent call first): CMakeLists.txt:48 (include) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at blt/SetupBLT.cmake:172 (set): implicitly converting 'LIST' to 'STRING' type. Call Stack (most recent call first): CMakeLists.txt:48 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- OpenMP Support is true -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- OpenMP CXX Flags: -fopenmp -- C Compiler family is GNU -- Adding optional BLT definitions and compiler flags -- Standard C++11 selected -- Fortran support disabled. -- CMAKE_C_FLAGS flags are: -pipe -O2 -fno-strict-aliasing -- CMAKE_CXX_FLAGS flags are: -pipe -O2 -fno-strict-aliasing -- CMAKE_EXE_LINKER_FLAGS flags are: CMake Warning (dev) at blt/cmake/BLTMacros.cmake:483 (target_sources): Policy CMP0076 is not set: target_sources() command converts relative paths to absolute. Run "cmake --help-policy CMP0076" for policy details. Use the cmake_policy command to set the policy and suppress this warning. An interface source of target "simdops" has a relative path. Call Stack (most recent call first): simdops/CMakeLists.txt:2 (blt_add_library) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at blt/cmake/BLTMacros.cmake:314 (set): implicitly converting 'LIST' to 'STRING' type. Call Stack (most recent call first): CMakeLists.txt:104 (blt_register_library) This warning is for project developers. Use -Wno-dev to suppress it. -- Configuring done (6.7s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_DEBUG CMAKE_MODULE_LINKER_FLAGS CMAKE_SHARED_LINKER_FLAGS FETCHCONTENT_FULLY_DISCONNECTED THREADS_HAVE_PTHREAD_ARG -- Build files have been written to: /construction/science/cardioid/.build SUCCEEDED 00:00:08 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for cardioid-g20211026_1 /usr/local/bin/cmake -S/construction/science/cardioid/cardioid-2f66d9f -B/construction/science/cardioid/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/science/cardioid/.build/CMakeFiles /construction/science/cardioid/.build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all --- simUtil/src/CMakeFiles/simUtil.dir/all --- --- elec/CMakeFiles/heart_transport.dir/all --- --- elec/CMakeFiles/threading.dir/all --- --- elec/CMakeFiles/ode_cpu_only.dir/all --- --- elec/CMakeFiles/threading.dir/all --- /usr/bin/make -f elec/CMakeFiles/threading.dir/build.make elec/CMakeFiles/threading.dir/depend --- elec/CMakeFiles/ode_cpu_only.dir/all --- /usr/bin/make -f elec/CMakeFiles/ode_cpu_only.dir/build.make elec/CMakeFiles/ode_cpu_only.dir/depend --- elec/CMakeFiles/threading.dir/all --- --- elec/CMakeFiles/threading.dir/depend --- --- elec/CMakeFiles/heart_transport.dir/all --- /usr/bin/make -f elec/CMakeFiles/heart_transport.dir/build.make elec/CMakeFiles/heart_transport.dir/depend --- simUtil/src/CMakeFiles/simUtil.dir/all --- /usr/bin/make -f simUtil/src/CMakeFiles/simUtil.dir/build.make simUtil/src/CMakeFiles/simUtil.dir/depend --- elec/CMakeFiles/threading.dir/all --- cd /construction/science/cardioid/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/cardioid/cardioid-2f66d9f /construction/science/cardioid/cardioid-2f66d9f/elec /construction/science/cardioid/.build /construction/science/cardioid/.build/elec /construction/science/cardioid/.build/elec/CMakeFiles/threading.dir/DependInfo.cmake --- elec/CMakeFiles/heart_transport.dir/all --- --- elec/CMakeFiles/heart_transport.dir/depend --- --- elec/CMakeFiles/threading.dir/all --- /usr/bin/make -f elec/CMakeFiles/threading.dir/build.make elec/CMakeFiles/threading.dir/build --- elec/CMakeFiles/ode_cpu_only.dir/all --- --- elec/CMakeFiles/ode_cpu_only.dir/depend --- cd /construction/science/cardioid/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/cardioid/cardioid-2f66d9f /construction/science/cardioid/cardioid-2f66d9f/elec /construction/science/cardioid/.build /construction/science/cardioid/.build/elec /construction/science/cardioid/.build/elec/CMakeFiles/ode_cpu_only.dir/DependInfo.cmake --- elec/CMakeFiles/heart_transport.dir/all --- cd /construction/science/cardioid/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/cardioid/cardioid-2f66d9f /construction/science/cardioid/cardioid-2f66d9f/elec /construction/science/cardioid/.build /construction/science/cardioid/.build/elec /construction/science/cardioid/.build/elec/CMakeFiles/heart_transport.dir/DependInfo.cmake --- elec/CMakeFiles/threading.dir/all --- --- elec/CMakeFiles/threading.dir/ThreadServer.cc.o --- --- elec/CMakeFiles/threading.dir/ThreadUtils.cc.o --- [ 1%] Building CXX object elec/CMakeFiles/threading.dir/ThreadUtils.cc.o cd /construction/science/cardioid/.build/elec && /usr/local/libexec/ccache/c++ -DHAVE_LAPACK -I/construction/science/cardioid/cardioid-2f66d9f/elec -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=c++11 -fPIC -fopenmp -MD -MT elec/CMakeFiles/threading.dir/ThreadUtils.cc.o -MF CMakeFiles/threading.dir/ThreadUtils.cc.o.d -o CMakeFiles/threading.dir/ThreadUtils.cc.o -c /construction/science/cardioid/cardioid-2f66d9f/elec/ThreadUtils.cc --- elec/CMakeFiles/ode_cpu_only.dir/all --- /usr/bin/make -f elec/CMakeFiles/ode_cpu_only.dir/build.make elec/CMakeFiles/ode_cpu_only.dir/build --- simUtil/src/CMakeFiles/simUtil.dir/all --- --- simUtil/src/CMakeFiles/simUtil.dir/depend --- cd /construction/science/cardioid/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/cardioid/cardioid-2f66d9f /construction/science/cardioid/cardioid-2f66d9f/simUtil/src /construction/science/cardioid/.build /construction/science/cardioid/.build/simUtil/src /construction/science/cardioid/.build/simUtil/src/CMakeFiles/simUtil.dir/DependInfo.cmake --- elec/CMakeFiles/threading.dir/all --- --- elec/CMakeFiles/threading.dir/ThreadServer.cc.o --- [ 2%] Building CXX object elec/CMakeFiles/threading.dir/ThreadServer.cc.o cd /construction/science/cardioid/.build/elec && /usr/local/libexec/ccache/c++ -DHAVE_LAPACK -I/construction/science/cardioid/cardioid-2f66d9f/elec -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=c++11 -fPIC -fopenmp -MD -MT elec/CMakeFiles/threading.dir/ThreadServer.cc.o -MF CMakeFiles/threading.dir/ThreadServer.cc.o.d -o CMakeFiles/threading.dir/ThreadServer.cc.o -c /construction/science/cardioid/cardioid-2f66d9f/elec/ThreadServer.cc --- simUtil/src/CMakeFiles/simUtil.dir/all --- /usr/bin/make -f simUtil/src/CMakeFiles/simUtil.dir/build.make simUtil/src/CMakeFiles/simUtil.dir/build --- elec/CMakeFiles/threading.dir/all --- --- lib/libthreading.a --- [ 3%] Linking CXX static library ../lib/libthreading.a --- elec/CMakeFiles/heart_transport.dir/all --- /usr/bin/make -f elec/CMakeFiles/heart_transport.dir/build.make elec/CMakeFiles/heart_transport.dir/build --- elec/CMakeFiles/threading.dir/all --- cd /construction/science/cardioid/.build/elec && /usr/local/bin/cmake -P CMakeFiles/threading.dir/cmake_clean_target.cmake cd /construction/science/cardioid/.build/elec && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/threading.dir/link.txt --verbose=1 /usr/bin/ar qc ../lib/libthreading.a CMakeFiles/threading.dir/ThreadServer.cc.o CMakeFiles/threading.dir/ThreadUtils.cc.o --- elec/CMakeFiles/ode_cpu_only.dir/all --- --- elec/CMakeFiles/ode_cpu_only.dir/TT06GatesSimd2.c.o --- --- elec/CMakeFiles/ode_cpu_only.dir/TT06GatesSimd.c.o --- --- elec/CMakeFiles/ode_cpu_only.dir/TT06Gates.c.o --- --- elec/CMakeFiles/ode_cpu_only.dir/TT06NonGates.c.o --- --- elec/CMakeFiles/ode_cpu_only.dir/TT06GatesSimd.c.o --- [ 5%] Building C object elec/CMakeFiles/ode_cpu_only.dir/TT06GatesSimd.c.o cd /construction/science/cardioid/.build/elec && /usr/local/libexec/ccache/cc -DHAVE_LAPACK -I/construction/science/cardioid/cardioid-2f66d9f/elec -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu99 -fPIC -fopenmp -MD -MT elec/CMakeFiles/ode_cpu_only.dir/TT06GatesSimd.c.o -MF CMakeFiles/ode_cpu_only.dir/TT06GatesSimd.c.o.d -o CMakeFiles/ode_cpu_only.dir/TT06GatesSimd.c.o -c /construction/science/cardioid/cardioid-2f66d9f/elec/TT06GatesSimd.c --- elec/CMakeFiles/ode_cpu_only.dir/TT06GatesSimd2.c.o --- [ 4%] Building C object elec/CMakeFiles/ode_cpu_only.dir/TT06GatesSimd2.c.o cd /construction/science/cardioid/.build/elec && /usr/local/libexec/ccache/cc -DHAVE_LAPACK -I/construction/science/cardioid/cardioid-2f66d9f/elec -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu99 -fPIC -fopenmp -MD -MT elec/CMakeFiles/ode_cpu_only.dir/TT06GatesSimd2.c.o -MF CMakeFiles/ode_cpu_only.dir/TT06GatesSimd2.c.o.d -o CMakeFiles/ode_cpu_only.dir/TT06GatesSimd2.c.o -c /construction/science/cardioid/cardioid-2f66d9f/elec/TT06GatesSimd2.c --- elec/CMakeFiles/ode_cpu_only.dir/TT06NonGatesSimd.c.o --- --- simUtil/src/CMakeFiles/simUtil.dir/all --- --- simUtil/src/CMakeFiles/simUtil.dir/ddcMalloc.c.o --- --- simUtil/src/CMakeFiles/simUtil.dir/error.c.o --- --- simUtil/src/CMakeFiles/simUtil.dir/GridAssignmentObject.c.o --- --- simUtil/src/CMakeFiles/simUtil.dir/hardwareInfo.c.o --- --- simUtil/src/CMakeFiles/simUtil.dir/heap.c.o --- --- simUtil/src/CMakeFiles/simUtil.dir/ioUtils.c.o --- --- simUtil/src/CMakeFiles/simUtil.dir/intQueue.c.o --- --- simUtil/src/CMakeFiles/simUtil.dir/ddcMalloc.c.o --- [ 5%] Building C object simUtil/src/CMakeFiles/simUtil.dir/ddcMalloc.c.o cd /construction/science/cardioid/.build/simUtil/src && /usr/local/libexec/ccache/cc -DDiff_Weight_Type_Single -DHAVE_LAPACK -DWITH_MPI -DWITH_PIO -I/construction/science/cardioid/cardioid-2f66d9f/simUtil/src/../include -isystem /usr/local/include/json-c -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu99 -fPIC -MD -MT simUtil/src/CMakeFiles/simUtil.dir/ddcMalloc.c.o -MF CMakeFiles/simUtil.dir/ddcMalloc.c.o.d -o CMakeFiles/simUtil.dir/ddcMalloc.c.o -c /construction/science/cardioid/cardioid-2f66d9f/simUtil/src/ddcMalloc.c --- simUtil/src/CMakeFiles/simUtil.dir/heap.c.o --- [ 6%] Building C object simUtil/src/CMakeFiles/simUtil.dir/heap.c.o cd /construction/science/cardioid/.build/simUtil/src && /usr/local/libexec/ccache/cc -DDiff_Weight_Type_Single -DHAVE_LAPACK -DWITH_MPI -DWITH_PIO -I/construction/science/cardioid/cardioid-2f66d9f/simUtil/src/../include -isystem /usr/local/include/json-c -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu99 -fPIC -MD -MT simUtil/src/CMakeFiles/simUtil.dir/heap.c.o -MF CMakeFiles/simUtil.dir/heap.c.o.d -o CMakeFiles/simUtil.dir/heap.c.o -c /construction/science/cardioid/cardioid-2f66d9f/simUtil/src/heap.c --- simUtil/src/CMakeFiles/simUtil.dir/ioUtils.c.o --- [ 7%] Building C object simUtil/src/CMakeFiles/simUtil.dir/ioUtils.c.o cd /construction/science/cardioid/.build/simUtil/src && /usr/local/libexec/ccache/cc -DDiff_Weight_Type_Single -DHAVE_LAPACK -DWITH_MPI -DWITH_PIO -I/construction/science/cardioid/cardioid-2f66d9f/simUtil/src/../include -isystem /usr/local/include/json-c -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu99 -fPIC -MD -MT simUtil/src/CMakeFiles/simUtil.dir/ioUtils.c.o -MF CMakeFiles/simUtil.dir/ioUtils.c.o.d -o CMakeFiles/simUtil.dir/ioUtils.c.o -c /construction/science/cardioid/cardioid-2f66d9f/simUtil/src/ioUtils.c --- elec/CMakeFiles/ode_cpu_only.dir/all --- --- elec/CMakeFiles/ode_cpu_only.dir/TT06NonGates.c.o --- [ 9%] Building C object elec/CMakeFiles/ode_cpu_only.dir/TT06NonGates.c.o --- elec/CMakeFiles/ode_cpu_only.dir/TT06NonGatesSimd.c.o --- [ 9%] Building C object elec/CMakeFiles/ode_cpu_only.dir/TT06NonGatesSimd.c.o --- elec/CMakeFiles/ode_cpu_only.dir/TT06NonGates.c.o --- cd /construction/science/cardioid/.build/elec && /usr/local/libexec/ccache/cc -DHAVE_LAPACK -I/construction/science/cardioid/cardioid-2f66d9f/elec -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu99 -fPIC -fopenmp -MD -MT elec/CMakeFiles/ode_cpu_only.dir/TT06NonGates.c.o -MF CMakeFiles/ode_cpu_only.dir/TT06NonGates.c.o.d -o CMakeFiles/ode_cpu_only.dir/TT06NonGates.c.o -c /construction/science/cardioid/cardioid-2f66d9f/elec/TT06NonGates.c --- elec/CMakeFiles/ode_cpu_only.dir/TT06NonGatesSimd.c.o --- cd /construction/science/cardioid/.build/elec && /usr/local/libexec/ccache/cc -DHAVE_LAPACK -I/construction/science/cardioid/cardioid-2f66d9f/elec -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu99 -fPIC -fopenmp -MD -MT elec/CMakeFiles/ode_cpu_only.dir/TT06NonGatesSimd.c.o -MF CMakeFiles/ode_cpu_only.dir/TT06NonGatesSimd.c.o.d -o CMakeFiles/ode_cpu_only.dir/TT06NonGatesSimd.c.o -c /construction/science/cardioid/cardioid-2f66d9f/elec/TT06NonGatesSimd.c --- simUtil/src/CMakeFiles/simUtil.dir/all --- --- simUtil/src/CMakeFiles/simUtil.dir/intQueue.c.o --- [ 10%] Building C object simUtil/src/CMakeFiles/simUtil.dir/intQueue.c.o --- elec/CMakeFiles/ode_cpu_only.dir/all --- --- elec/CMakeFiles/ode_cpu_only.dir/svd.c.o --- --- simUtil/src/CMakeFiles/simUtil.dir/all --- cd /construction/science/cardioid/.build/simUtil/src && /usr/local/libexec/ccache/cc -DDiff_Weight_Type_Single -DHAVE_LAPACK -DWITH_MPI -DWITH_PIO -I/construction/science/cardioid/cardioid-2f66d9f/simUtil/src/../include -isystem /usr/local/include/json-c -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu99 -fPIC -MD -MT simUtil/src/CMakeFiles/simUtil.dir/intQueue.c.o -MF CMakeFiles/simUtil.dir/intQueue.c.o.d -o CMakeFiles/simUtil.dir/intQueue.c.o -c /construction/science/cardioid/cardioid-2f66d9f/simUtil/src/intQueue.c --- elec/CMakeFiles/threading.dir/all --- /usr/bin/ranlib ../lib/libthreading.a --- simUtil/src/CMakeFiles/simUtil.dir/all --- --- simUtil/src/CMakeFiles/simUtil.dir/lessThan.c.o --- --- elec/CMakeFiles/ode_cpu_only.dir/all --- [ 11%] Building C object elec/CMakeFiles/ode_cpu_only.dir/svd.c.o cd /construction/science/cardioid/.build/elec && /usr/local/libexec/ccache/cc -DHAVE_LAPACK -I/construction/science/cardioid/cardioid-2f66d9f/elec -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu99 -fPIC -fopenmp -MD -MT elec/CMakeFiles/ode_cpu_only.dir/svd.c.o -MF CMakeFiles/ode_cpu_only.dir/svd.c.o.d -o CMakeFiles/ode_cpu_only.dir/svd.c.o -c /construction/science/cardioid/cardioid-2f66d9f/elec/svd.c --- simUtil/src/CMakeFiles/simUtil.dir/all --- --- simUtil/src/CMakeFiles/simUtil.dir/match.c.o --- --- simUtil/src/CMakeFiles/simUtil.dir/mpiUtils.c.o --- --- simUtil/src/CMakeFiles/simUtil.dir/object.c.o --- --- simUtil/src/CMakeFiles/simUtil.dir/lessThan.c.o --- [ 12%] Building C object simUtil/src/CMakeFiles/simUtil.dir/lessThan.c.o cd /construction/science/cardioid/.build/simUtil/src && /usr/local/libexec/ccache/cc -DDiff_Weight_Type_Single -DHAVE_LAPACK -DWITH_MPI -DWITH_PIO -I/construction/science/cardioid/cardioid-2f66d9f/simUtil/src/../include -isystem /usr/local/include/json-c -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu99 -fPIC -MD -MT simUtil/src/CMakeFiles/simUtil.dir/lessThan.c.o -MF CMakeFiles/simUtil.dir/lessThan.c.o.d -o CMakeFiles/simUtil.dir/lessThan.c.o -c /construction/science/cardioid/cardioid-2f66d9f/simUtil/src/lessThan.c --- simUtil/src/CMakeFiles/simUtil.dir/pio.c.o --- --- simUtil/src/CMakeFiles/simUtil.dir/pioFixedRecordHelper.c.o --- --- simUtil/src/CMakeFiles/simUtil.dir/match.c.o --- [ 12%] Building C object simUtil/src/CMakeFiles/simUtil.dir/match.c.o cd /construction/science/cardioid/.build/simUtil/src && /usr/local/libexec/ccache/cc -DDiff_Weight_Type_Single -DHAVE_LAPACK -DWITH_MPI -DWITH_PIO -I/construction/science/cardioid/cardioid-2f66d9f/simUtil/src/../include -isystem /usr/local/include/json-c -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu99 -fPIC -MD -MT simUtil/src/CMakeFiles/simUtil.dir/match.c.o -MF CMakeFiles/simUtil.dir/match.c.o.d -o CMakeFiles/simUtil.dir/match.c.o -c /construction/science/cardioid/cardioid-2f66d9f/simUtil/src/match.c --- simUtil/src/CMakeFiles/simUtil.dir/pioHelper.c.o --- --- simUtil/src/CMakeFiles/simUtil.dir/mpiUtils.c.o --- [ 14%] Building C object simUtil/src/CMakeFiles/simUtil.dir/mpiUtils.c.o --- simUtil/src/CMakeFiles/simUtil.dir/pio.c.o --- [ 13%] Building C object simUtil/src/CMakeFiles/simUtil.dir/pio.c.o --- simUtil/src/CMakeFiles/simUtil.dir/mpiUtils.c.o --- cd /construction/science/cardioid/.build/simUtil/src && /usr/local/libexec/ccache/cc -DDiff_Weight_Type_Single -DHAVE_LAPACK -DWITH_MPI -DWITH_PIO -I/construction/science/cardioid/cardioid-2f66d9f/simUtil/src/../include -isystem /usr/local/include/json-c -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu99 -fPIC -MD -MT simUtil/src/CMakeFiles/simUtil.dir/mpiUtils.c.o -MF CMakeFiles/simUtil.dir/mpiUtils.c.o.d -o CMakeFiles/simUtil.dir/mpiUtils.c.o -c /construction/science/cardioid/cardioid-2f66d9f/simUtil/src/mpiUtils.c --- simUtil/src/CMakeFiles/simUtil.dir/error.c.o --- [ 14%] Building C object simUtil/src/CMakeFiles/simUtil.dir/error.c.o --- simUtil/src/CMakeFiles/simUtil.dir/pio.c.o --- cd /construction/science/cardioid/.build/simUtil/src && /usr/local/libexec/ccache/cc -DDiff_Weight_Type_Single -DHAVE_LAPACK -DWITH_MPI -DWITH_PIO -I/construction/science/cardioid/cardioid-2f66d9f/simUtil/src/../include -isystem /usr/local/include/json-c -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu99 -fPIC -MD -MT simUtil/src/CMakeFiles/simUtil.dir/pio.c.o -MF CMakeFiles/simUtil.dir/pio.c.o.d -o CMakeFiles/simUtil.dir/pio.c.o -c /construction/science/cardioid/cardioid-2f66d9f/simUtil/src/pio.c --- simUtil/src/CMakeFiles/simUtil.dir/error.c.o --- cd /construction/science/cardioid/.build/simUtil/src && /usr/local/libexec/ccache/cc -DDiff_Weight_Type_Single -DHAVE_LAPACK -DWITH_MPI -DWITH_PIO -I/construction/science/cardioid/cardioid-2f66d9f/simUtil/src/../include -isystem /usr/local/include/json-c -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu99 -fPIC -MD -MT simUtil/src/CMakeFiles/simUtil.dir/error.c.o -MF CMakeFiles/simUtil.dir/error.c.o.d -o CMakeFiles/simUtil.dir/error.c.o -c /construction/science/cardioid/cardioid-2f66d9f/simUtil/src/error.c --- simUtil/src/CMakeFiles/simUtil.dir/pioFixedRecordHelper.c.o --- [ 15%] Building C object simUtil/src/CMakeFiles/simUtil.dir/pioFixedRecordHelper.c.o cd /construction/science/cardioid/.build/simUtil/src && /usr/local/libexec/ccache/cc -DDiff_Weight_Type_Single -DHAVE_LAPACK -DWITH_MPI -DWITH_PIO -I/construction/science/cardioid/cardioid-2f66d9f/simUtil/src/../include -isystem /usr/local/include/json-c -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu99 -fPIC -MD -MT simUtil/src/CMakeFiles/simUtil.dir/pioFixedRecordHelper.c.o -MF CMakeFiles/simUtil.dir/pioFixedRecordHelper.c.o.d -o CMakeFiles/simUtil.dir/pioFixedRecordHelper.c.o -c /construction/science/cardioid/cardioid-2f66d9f/simUtil/src/pioFixedRecordHelper.c --- simUtil/src/CMakeFiles/simUtil.dir/pioVariableRecordHelper.c.o --- --- simUtil/src/CMakeFiles/simUtil.dir/tagServer.c.o --- --- simUtil/src/CMakeFiles/simUtil.dir/three_algebra.c.o --- --- simUtil/src/CMakeFiles/simUtil.dir/pioVariableRecordHelper.c.o --- [ 15%] Building C object simUtil/src/CMakeFiles/simUtil.dir/pioVariableRecordHelper.c.o --- simUtil/src/CMakeFiles/simUtil.dir/three_algebra.c.o --- [ 16%] Building C object simUtil/src/CMakeFiles/simUtil.dir/three_algebra.c.o --- simUtil/src/CMakeFiles/simUtil.dir/pioVariableRecordHelper.c.o --- cd /construction/science/cardioid/.build/simUtil/src && /usr/local/libexec/ccache/cc -DDiff_Weight_Type_Single -DHAVE_LAPACK -DWITH_MPI -DWITH_PIO -I/construction/science/cardioid/cardioid-2f66d9f/simUtil/src/../include -isystem /usr/local/include/json-c -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu99 -fPIC -MD -MT simUtil/src/CMakeFiles/simUtil.dir/pioVariableRecordHelper.c.o -MF CMakeFiles/simUtil.dir/pioVariableRecordHelper.c.o.d -o CMakeFiles/simUtil.dir/pioVariableRecordHelper.c.o -c /construction/science/cardioid/cardioid-2f66d9f/simUtil/src/pioVariableRecordHelper.c --- simUtil/src/CMakeFiles/simUtil.dir/three_algebra.c.o --- cd /construction/science/cardioid/.build/simUtil/src && /usr/local/libexec/ccache/cc -DDiff_Weight_Type_Single -DHAVE_LAPACK -DWITH_MPI -DWITH_PIO -I/construction/science/cardioid/cardioid-2f66d9f/simUtil/src/../include -isystem /usr/local/include/json-c -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu99 -fPIC -MD -MT simUtil/src/CMakeFiles/simUtil.dir/three_algebra.c.o -MF CMakeFiles/simUtil.dir/three_algebra.c.o.d -o CMakeFiles/simUtil.dir/three_algebra.c.o -c /construction/science/cardioid/cardioid-2f66d9f/simUtil/src/three_algebra.c --- simUtil/src/CMakeFiles/simUtil.dir/units.c.o --- --- simUtil/src/CMakeFiles/simUtil.dir/tagServer.c.o --- [ 17%] Building C object simUtil/src/CMakeFiles/simUtil.dir/tagServer.c.o cd /construction/science/cardioid/.build/simUtil/src && /usr/local/libexec/ccache/cc -DDiff_Weight_Type_Single -DHAVE_LAPACK -DWITH_MPI -DWITH_PIO -I/construction/science/cardioid/cardioid-2f66d9f/simUtil/src/../include -isystem /usr/local/include/json-c -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu99 -fPIC -MD -MT simUtil/src/CMakeFiles/simUtil.dir/tagServer.c.o -MF CMakeFiles/simUtil.dir/tagServer.c.o.d -o CMakeFiles/simUtil.dir/tagServer.c.o -c /construction/science/cardioid/cardioid-2f66d9f/simUtil/src/tagServer.c --- simUtil/src/CMakeFiles/simUtil.dir/utilities.c.o --- --- simUtil/src/CMakeFiles/simUtil.dir/object_cc.cc.o --- --- simUtil/src/CMakeFiles/simUtil.dir/object.c.o --- [ 19%] Building C object simUtil/src/CMakeFiles/simUtil.dir/object.c.o --- simUtil/src/CMakeFiles/simUtil.dir/GridAssignmentObject.c.o --- [ 20%] Building C object simUtil/src/CMakeFiles/simUtil.dir/GridAssignmentObject.c.o --- simUtil/src/CMakeFiles/simUtil.dir/pioHelper.c.o --- [ 21%] Building C object simUtil/src/CMakeFiles/simUtil.dir/pioHelper.c.o --- simUtil/src/CMakeFiles/simUtil.dir/object.c.o --- cd /construction/science/cardioid/.build/simUtil/src && /usr/local/libexec/ccache/cc -DDiff_Weight_Type_Single -DHAVE_LAPACK -DWITH_MPI -DWITH_PIO -I/construction/science/cardioid/cardioid-2f66d9f/simUtil/src/../include -isystem /usr/local/include/json-c -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu99 -fPIC -MD -MT simUtil/src/CMakeFiles/simUtil.dir/object.c.o -MF CMakeFiles/simUtil.dir/object.c.o.d -o CMakeFiles/simUtil.dir/object.c.o -c /construction/science/cardioid/cardioid-2f66d9f/simUtil/src/object.c --- simUtil/src/CMakeFiles/simUtil.dir/GridAssignmentObject.c.o --- cd /construction/science/cardioid/.build/simUtil/src && /usr/local/libexec/ccache/cc -DDiff_Weight_Type_Single -DHAVE_LAPACK -DWITH_MPI -DWITH_PIO -I/construction/science/cardioid/cardioid-2f66d9f/simUtil/src/../include -isystem /usr/local/include/json-c -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu99 -fPIC -MD -MT simUtil/src/CMakeFiles/simUtil.dir/GridAssignmentObject.c.o -MF CMakeFiles/simUtil.dir/GridAssignmentObject.c.o.d -o CMakeFiles/simUtil.dir/GridAssignmentObject.c.o -c /construction/science/cardioid/cardioid-2f66d9f/simUtil/src/GridAssignmentObject.c --- simUtil/src/CMakeFiles/simUtil.dir/pioHelper.c.o --- cd /construction/science/cardioid/.build/simUtil/src && /usr/local/libexec/ccache/cc -DDiff_Weight_Type_Single -DHAVE_LAPACK -DWITH_MPI -DWITH_PIO -I/construction/science/cardioid/cardioid-2f66d9f/simUtil/src/../include -isystem /usr/local/include/json-c -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu99 -fPIC -MD -MT simUtil/src/CMakeFiles/simUtil.dir/pioHelper.c.o -MF CMakeFiles/simUtil.dir/pioHelper.c.o.d -o CMakeFiles/simUtil.dir/pioHelper.c.o -c /construction/science/cardioid/cardioid-2f66d9f/simUtil/src/pioHelper.c --- elec/CMakeFiles/ode_cpu_only.dir/all --- --- elec/CMakeFiles/ode_cpu_only.dir/TT06Gates.c.o --- [ 22%] Building C object elec/CMakeFiles/ode_cpu_only.dir/TT06Gates.c.o cd /construction/science/cardioid/.build/elec && /usr/local/libexec/ccache/cc -DHAVE_LAPACK -I/construction/science/cardioid/cardioid-2f66d9f/elec -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu99 -fPIC -fopenmp -MD -MT elec/CMakeFiles/ode_cpu_only.dir/TT06Gates.c.o -MF CMakeFiles/ode_cpu_only.dir/TT06Gates.c.o.d -o CMakeFiles/ode_cpu_only.dir/TT06Gates.c.o -c /construction/science/cardioid/cardioid-2f66d9f/elec/TT06Gates.c --- elec/CMakeFiles/threading.dir/all --- [ 22%] Built target threading --- simUtil/src/CMakeFiles/simUtil.dir/all --- --- simUtil/src/CMakeFiles/simUtil.dir/hardwareInfo.c.o --- [ 24%] Building C object simUtil/src/CMakeFiles/simUtil.dir/hardwareInfo.c.o cd /construction/science/cardioid/.build/simUtil/src && /usr/local/libexec/ccache/cc -DDiff_Weight_Type_Single -DHAVE_LAPACK -DWITH_MPI -DWITH_PIO -I/construction/science/cardioid/cardioid-2f66d9f/simUtil/src/../include -isystem /usr/local/include/json-c -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu99 -fPIC -MD -MT simUtil/src/CMakeFiles/simUtil.dir/hardwareInfo.c.o -MF CMakeFiles/simUtil.dir/hardwareInfo.c.o.d -o CMakeFiles/simUtil.dir/hardwareInfo.c.o -c /construction/science/cardioid/cardioid-2f66d9f/simUtil/src/hardwareInfo.c --- simUtil/src/CMakeFiles/simUtil.dir/object_cc.cc.o --- [ 25%] Building CXX object simUtil/src/CMakeFiles/simUtil.dir/object_cc.cc.o --- simUtil/src/CMakeFiles/simUtil.dir/units.c.o --- [ 18%] Building C object simUtil/src/CMakeFiles/simUtil.dir/units.c.o --- simUtil/src/CMakeFiles/simUtil.dir/object_cc.cc.o --- cd /construction/science/cardioid/.build/simUtil/src && /usr/local/libexec/ccache/c++ -DDiff_Weight_Type_Single -DHAVE_LAPACK -DWITH_MPI -DWITH_PIO -I/construction/science/cardioid/cardioid-2f66d9f/simUtil/src/../include -isystem /usr/local/include/json-c -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=c++11 -fPIC -MD -MT simUtil/src/CMakeFiles/simUtil.dir/object_cc.cc.o -MF CMakeFiles/simUtil.dir/object_cc.cc.o.d -o CMakeFiles/simUtil.dir/object_cc.cc.o -c /construction/science/cardioid/cardioid-2f66d9f/simUtil/src/object_cc.cc --- simUtil/src/CMakeFiles/simUtil.dir/units.c.o --- cd /construction/science/cardioid/.build/simUtil/src && /usr/local/libexec/ccache/cc -DDiff_Weight_Type_Single -DHAVE_LAPACK -DWITH_MPI -DWITH_PIO -I/construction/science/cardioid/cardioid-2f66d9f/simUtil/src/../include -isystem /usr/local/include/json-c -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu99 -fPIC -MD -MT simUtil/src/CMakeFiles/simUtil.dir/units.c.o -MF CMakeFiles/simUtil.dir/units.c.o.d -o CMakeFiles/simUtil.dir/units.c.o -c /construction/science/cardioid/cardioid-2f66d9f/simUtil/src/units.c --- simUtil/src/CMakeFiles/simUtil.dir/utilities.c.o --- [ 23%] Building C object simUtil/src/CMakeFiles/simUtil.dir/utilities.c.o cd /construction/science/cardioid/.build/simUtil/src && /usr/local/libexec/ccache/cc -DDiff_Weight_Type_Single -DHAVE_LAPACK -DWITH_MPI -DWITH_PIO -I/construction/science/cardioid/cardioid-2f66d9f/simUtil/src/../include -isystem /usr/local/include/json-c -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu99 -fPIC -MD -MT simUtil/src/CMakeFiles/simUtil.dir/utilities.c.o -MF CMakeFiles/simUtil.dir/utilities.c.o.d -o CMakeFiles/simUtil.dir/utilities.c.o -c /construction/science/cardioid/cardioid-2f66d9f/simUtil/src/utilities.c --- elec/CMakeFiles/ode_cpu_only.dir/all --- --- lib/libode_cpu_only.a --- [ 26%] Linking C static library ../lib/libode_cpu_only.a cd /construction/science/cardioid/.build/elec && /usr/local/bin/cmake -P CMakeFiles/ode_cpu_only.dir/cmake_clean_target.cmake --- simUtil/src/CMakeFiles/simUtil.dir/all --- --- simUtil/src/CMakeFiles/simUtil.dir/ddcMalloc.c.o --- /construction/science/cardioid/cardioid-2f66d9f/simUtil/src/ddcMalloc.c:12:10: fatal error: malloc.h: No such file or directory #include ^~~~~~~~~~ compilation terminated. *** [simUtil/src/CMakeFiles/simUtil.dir/ddcMalloc.c.o] Error code 1 make[3]: stopped in /construction/science/cardioid/.build --- elec/CMakeFiles/heart_transport.dir/all --- --- elec/CMakeFiles/heart_transport.dir/SpaceAllocator.cc.o --- --- elec/CMakeFiles/ode_cpu_only.dir/all --- cd /construction/science/cardioid/.build/elec && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ode_cpu_only.dir/link.txt --verbose=1 --- elec/CMakeFiles/heart_transport.dir/all --- [ 27%] Building CXX object elec/CMakeFiles/heart_transport.dir/SpaceAllocator.cc.o cd /construction/science/cardioid/.build/elec && /usr/local/libexec/ccache/c++ -DHAVE_LAPACK -I/construction/science/cardioid/cardioid-2f66d9f/elec -pipe -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=c++11 -fPIC -fopenmp -MD -MT elec/CMakeFiles/heart_transport.dir/SpaceAllocator.cc.o -MF CMakeFiles/heart_transport.dir/SpaceAllocator.cc.o.d -o CMakeFiles/heart_transport.dir/SpaceAllocator.cc.o -c /construction/science/cardioid/cardioid-2f66d9f/elec/SpaceAllocator.cc --- elec/CMakeFiles/ode_cpu_only.dir/all --- /usr/bin/ar qc ../lib/libode_cpu_only.a CMakeFiles/ode_cpu_only.dir/TT06GatesSimd2.c.o CMakeFiles/ode_cpu_only.dir/TT06GatesSimd.c.o CMakeFiles/ode_cpu_only.dir/TT06Gates.c.o CMakeFiles/ode_cpu_only.dir/TT06NonGates.c.o CMakeFiles/ode_cpu_only.dir/TT06NonGatesSimd.c.o CMakeFiles/ode_cpu_only.dir/svd.c.o --- simUtil/src/CMakeFiles/simUtil.dir/all --- --- simUtil/src/CMakeFiles/simUtil.dir/utilities.c.o --- /construction/science/cardioid/cardioid-2f66d9f/simUtil/src/utilities.c:16:10: fatal error: malloc.h: No such file or directory #include ^~~~~~~~~~ compilation terminated. --- elec/CMakeFiles/ode_cpu_only.dir/all --- /usr/bin/ranlib ../lib/libode_cpu_only.a --- simUtil/src/CMakeFiles/simUtil.dir/all --- *** [simUtil/src/CMakeFiles/simUtil.dir/utilities.c.o] Error code 1 make[3]: stopped in /construction/science/cardioid/.build 2 errors make[3]: stopped in /construction/science/cardioid/.build --- elec/CMakeFiles/heart_transport.dir/all --- *** [elec/CMakeFiles/heart_transport.dir/all] Error code 6 make[2]: stopped in /construction/science/cardioid/.build --- simUtil/src/CMakeFiles/simUtil.dir/all --- *** [simUtil/src/CMakeFiles/simUtil.dir/all] Error code 2 make[2]: stopped in /construction/science/cardioid/.build --- elec/CMakeFiles/ode_cpu_only.dir/all --- *** [elec/CMakeFiles/ode_cpu_only.dir/all] Error code 6 make[2]: stopped in /construction/science/cardioid/.build 3 errors make[2]: stopped in /construction/science/cardioid/.build *** [all] Error code 2 make[1]: stopped in /construction/science/cardioid/.build 1 error make[1]: stopped in /construction/science/cardioid/.build ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /xports/science/cardioid FAILED 00:00:01