------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 UNAME_r=6.5 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/science/bout++-merging-filaments XDG_CONFIG_HOME=/construction/science/bout++-merging-filaments XDG_CACHE_HOME=/construction/science/bout++-merging-filaments/.cache HOME=/construction/science/bout++-merging-filaments TMPDIR="/tmp" PATH=/construction/science/bout++-merging-filaments/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/science/bout++-merging-filaments/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/science/bout++-merging-filaments XDG_CONFIG_HOME=/construction/science/bout++-merging-filaments XDG_CACHE_HOME=/construction/science/bout++-merging-filaments/.cache HOME=/construction/science/bout++-merging-filaments TMPDIR="/tmp" PATH=/construction/science/bout++-merging-filaments/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/science/bout++-merging-filaments/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/science/bout++-merging-filaments/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- CMAKE_BUILD_TYPE="release" OSREL=6.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/bout++-merging-filaments" EXAMPLESDIR="share/examples/bout++-merging-filaments" DATADIR="share/bout++-merging-filaments" WWWDIR="www/bout++-merging-filaments" ETCDIR="etc/bout++-merging-filaments" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/bout++-merging-filaments DOCSDIR=/usr/local/share/doc/bout++-merging-filaments EXAMPLESDIR=/usr/local/share/examples/bout++-merging-filaments WWWDIR=/usr/local/www/bout++-merging-filaments ETCDIR=/usr/local/etc/bout++-merging-filaments SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes DFLY_STING_XFAIL=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_COMPRESSION_FORMAT=.tgz DEVELOPER=1 WITH_CCACHE_BUILD=yes CCACHE_DIR=/ccache UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600503 OSVERSION=9999999 OSREL=6.5 _OSRELEASE=6.5-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=13 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.pkg Installing /packages/All/gettext-runtime-0.21.1.pkg Installing /packages/All/gmake-4.3_2.pkg Installing /packages/All/expat-2.5.0.pkg Installing /packages/All/libuv-1.46.0.pkg Installing /packages/All/openssl-1.1.1u,1.pkg Installing /packages/All/rhash-1.4.3.pkg Installing /packages/All/pkg-1.19.2.pkg Installing /packages/All/liblz4-1.9.4,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/zstd-1.5.5.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libarchive-3.6.2,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/ncurses-6.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from ncurses-6.4: -- To get the terminfo database please install the terminfo-db package: pkg install terminfo-db Installing /packages/All/cmake-core-3.26.1_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libtextstyle-0.21.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/gettext-tools-0.21.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/ccache-3.7.12_4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc create symlink for gcc (world) create symlink for g++ create symlink for g++ (world) ===== Message from ccache-3.7.12_4: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. Installing /packages/All/fftw3-3.3.10_3.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/gmp-6.2.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/mpfr-4.2.0_1,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/mpc-1.3.1_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/binutils-2.40_4,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/gcc12-12.2.0_6.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required create symlink for gcc12 create symlink for gcc12 (world) create symlink for g++12 create symlink for g++12 (world) create symlink for cpp12 create symlink for cpp12 (world) ===== Message from gcc12-12.2.0_6: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc12 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.20_1,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libelf-0.8.13_3.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/e2fsprogs-libuuid-1.47.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libnghttp2-1.53.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libssh2-1.11.0,3.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libunistring-1.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libidn2-2.3.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libpsl-0.21.2_3.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/ca_root_nss-3.89.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from ca_root_nss-3.89.1: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem Installing /packages/All/curl-8.1.2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libaec-1.0.6.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/hdf5-1.12.2_2,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/pkgconf-1.8.1,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/netcdf-4.9.2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/netcdf-cxx-4.3.1_3.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libpciaccess-0.17.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/level-zero-1.12.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/readline-8.2.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libxml2-2.10.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/hwloc2-2.8.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/json-c-0.16.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libsysinfo-0.0.3_2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libgpg-error-1.47.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libgcrypt-1.10.2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/munge-0.5.15.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libedit-3.1.20221030,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/lua54-5.4.6.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/slurm-wlm-20.02.7_3.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===> Creating groups. Creating group 'slurm' with gid '468'. ===> Creating users Creating user 'slurm' with uid '468'. ===== Message from slurm-wlm-20.02.7_3: -- ===> NOTICE: The slurm-wlm port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing Installing /packages/All/libepoll-shim-0.0.20230411.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/bash-5.2.15.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/perl5-5.32.1_3.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/mpich-3.4.3_2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from mpich-3.4.3_2: -- ===> NOTICE: The mpich port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing Installing /packages/All/libffi-3.4.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/mpdecimal-2.5.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/python39-3.9.17.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from python39-3.9.17: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 Installing /packages/All/bout++-4.4.2_3.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from bout++-4.4.2_3: -- You installed BOUT++, plasma fluid finite-difference simulation code. BOUT++ is a framework that allows to solve a variety of partial differential equations, with or without physical meaning. You can use BOUT++ in one of these ways: 1. Build with included examples: make WITH_EXAMPLES=yes These examples showcase what BOUT++ can do on simple PDE systems, 2. Build and run any of the dependent ports: science/bout++-* 3. Write your own BOUT++ applications solving your equations. UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:27 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> bout++-merging-filaments-g20200812_1 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> bout++-merging-filaments-g20200812_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by bout++-merging-filaments-g20200812_1 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> bout++-merging-filaments-g20200812_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by bout++-merging-filaments-g20200812_1 for building => SHA256 Checksum OK for boutproject-merging-filaments-g20200812-ee5a7b9_GH0.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> bout++-merging-filaments-g20200812_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by bout++-merging-filaments-g20200812_1 for building ===> Extracting for bout++-merging-filaments-g20200812_1 => SHA256 Checksum OK for boutproject-merging-filaments-g20200812-ee5a7b9_GH0.tar.gz. Extracted Memory Use: 2.16M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for bout++-merging-filaments-g20200812_1 SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> bout++-merging-filaments-g20200812_1 depends on executable: gmake - found ===> bout++-merging-filaments-g20200812_1 depends on file: /usr/local/bin/cmake - found ===> bout++-merging-filaments-g20200812_1 depends on executable: msgfmt - found ===> bout++-merging-filaments-g20200812_1 depends on file: /usr/local/bin/ccache - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> bout++-merging-filaments-g20200812_1 depends on shared library: libbout++.so - found (/usr/local/lib/libbout++.so) ===> bout++-merging-filaments-g20200812_1 depends on shared library: libintl.so - found (/usr/local/lib/libintl.so) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> bout++-merging-filaments-g20200812_1 depends on executable: gmake - found ===> bout++-merging-filaments-g20200812_1 depends on file: /usr/local/bin/cmake - found ===> bout++-merging-filaments-g20200812_1 depends on executable: msgfmt - found ===> bout++-merging-filaments-g20200812_1 depends on file: /usr/local/bin/ccache - found ===> bout++-merging-filaments-g20200812_1 depends on shared library: libbout++.so - found (/usr/local/lib/libbout++.so) ===> bout++-merging-filaments-g20200812_1 depends on shared library: libintl.so - found (/usr/local/lib/libintl.so) ===> Configuring for bout++-merging-filaments-g20200812_1 ===> Performing out-of-source build /bin/mkdir -p /construction/science/bout++-merging-filaments/.build -- The CXX compiler identification is GNU 8.3.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_CXX: /usr/local/lib/libmpicxx.so (found suitable exact version "3.1") -- Found MPI: TRUE (found suitable exact version "3.1") -- Found netCDF: /usr/local/lib/libnetcdf.so (found version "4.9.2") -- Found netCDFCxx version 4.3.1 -- Found netCDFCxx: /usr/local/lib/libnetcdf_c++4.so (found version "4.3.1") -- Found FFTW: /usr/local/lib/libfftw3.so -- Looking for sgemm_ -- Looking for sgemm_ - not found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/local/lib/libopenblas.so -- Looking for cheev_ -- Looking for cheev_ - found -- Found LAPACK: /usr/local/lib/libopenblas.so;-lpthread;-lm;-ldl -- Found Gettext: /usr/local/bin/msgmerge (found version "0.21.1") -- Found Intl: /usr/local/lib/libintl.so (found version "0.21.1") -- Found Libuuid: /usr/local/lib/libuuid.so -- Configuring done (3.3s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_COMPILER CMAKE_C_FLAGS CMAKE_C_FLAGS_DEBUG CMAKE_C_FLAGS_RELEASE CMAKE_MODULE_LINKER_FLAGS CMAKE_SHARED_LINKER_FLAGS FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /construction/science/bout++-merging-filaments/.build SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for bout++-merging-filaments-g20200812_1 /usr/local/bin/cmake -S/construction/science/bout++-merging-filaments/merging-filaments-ee5a7b9 -B/construction/science/bout++-merging-filaments/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/science/bout++-merging-filaments/.build/CMakeFiles /construction/science/bout++-merging-filaments/.build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all --- CMakeFiles/merging-flux.dir/all --- /usr/bin/make -f CMakeFiles/merging-flux.dir/build.make CMakeFiles/merging-flux.dir/depend --- CMakeFiles/merging-flux.dir/depend --- cd /construction/science/bout++-merging-filaments/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/bout++-merging-filaments/merging-filaments-ee5a7b9 /construction/science/bout++-merging-filaments/merging-filaments-ee5a7b9 /construction/science/bout++-merging-filaments/.build /construction/science/bout++-merging-filaments/.build /construction/science/bout++-merging-filaments/.build/CMakeFiles/merging-flux.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/merging-flux.dir/build.make CMakeFiles/merging-flux.dir/build --- CMakeFiles/merging-flux.dir/merging-flux.cxx.o --- --- CMakeFiles/merging-flux.dir/cephes/ellpe.cxx.o --- --- CMakeFiles/merging-flux.dir/cephes/ellpk.cxx.o --- --- CMakeFiles/merging-flux.dir/cephes/ellpe.cxx.o --- [ 40%] Building CXX object CMakeFiles/merging-flux.dir/cephes/ellpe.cxx.o /usr/local/libexec/ccache/c++ -DBACKTRACE -DBOUT_BACKTRACE -DBOUT_CHECK=2 -DBOUT_HAS_FFTW -DBOUT_HAS_LAPACK 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