------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 UNAME_r=6.5 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- MAKE=gmake XDG_DATA_HOME=/construction/science/antioch XDG_CONFIG_HOME=/construction/science/antioch XDG_CACHE_HOME=/construction/science/antioch/.cache HOME=/construction/science/antioch TMPDIR="/tmp" PATH=/construction/science/antioch/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/science/antioch/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 DEFAULT_AUTOCONF=2.71 CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/xports/Templates/config.site lt_cv_sys_max_cmd_len=262144 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- --disable-static --enable-eigen --with-eigen-include=/usr/local/include/eigen3 --enable-opencl --with-metaphysicl=/usr/local --with-viennacl=/usr/local/include --with-gsl=/usr/local --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/science/antioch XDG_CONFIG_HOME=/construction/science/antioch XDG_CACHE_HOME=/construction/science/antioch/.cache HOME=/construction/science/antioch TMPDIR="/tmp" PATH=/construction/science/antioch/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/science/antioch/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 DEFAULT_AUTOCONF=2.71 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS=" -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/science/antioch/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- OSREL=6.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/antioch" EXAMPLESDIR="share/examples/antioch" DATADIR="share/antioch" WWWDIR="www/antioch" ETCDIR="etc/antioch" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/antioch DOCSDIR=/usr/local/share/doc/antioch EXAMPLESDIR=/usr/local/share/examples/antioch WWWDIR=/usr/local/www/antioch ETCDIR=/usr/local/etc/antioch SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes DFLY_STING_XFAIL=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_COMPRESSION_FORMAT=.tgz DEVELOPER=1 WITH_CCACHE_BUILD=yes CCACHE_DIR=/ccache UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600503 OSVERSION=9999999 OSREL=6.5 _OSRELEASE=6.5-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=13 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/MetaPhysicL-1.3.3_1.pkg Installing /packages/All/ocl-icd-2.3.1_1.pkg Installing /packages/All/opencl-3.0.14.pkg ===== Message from opencl-3.0.14: -- OpenCL is the first open, royalty-free standard for cross-platform, parallel programming of modern processors. Installing /packages/All/viennacl-1.7.1_6.pkg ===== Message from viennacl-1.7.1_6: -- ===> NOTICE: The viennacl port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing Installing /packages/All/indexinfo-0.3.1.pkg Installing /packages/All/gmp-6.2.1.pkg Installing /packages/All/mpfr-4.2.0_1,1.pkg Installing /packages/All/mpc-1.3.1_1.pkg UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/liblz4-1.9.4,1.pkg Installing /packages/All/zstd-1.5.5.pkg Installing /packages/All/gettext-runtime-0.21.1.pkg Installing /packages/All/binutils-2.40_4,1.pkg Installing /packages/All/gcc12-12.2.0_6.pkg ===== Message from gcc12-12.2.0_6: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc12 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/blas-3.11.0_1.pkg Installing /packages/All/lapack-3.11.0_1.pkg Installing /packages/All/eigen-3.4.0_2.pkg Installing /packages/All/gmake-4.3_2.pkg Installing /packages/All/autoconf-switch-20220527.pkg Installing /packages/All/m4-1.4.19,1.pkg Installing /packages/All/perl5-5.32.1_3.pkg Installing /packages/All/autoconf-2.71.pkg Installing /packages/All/automake-1.16.5.pkg Installing /packages/All/libtool-2.4.7_1.pkg Installing /packages/All/ccache-3.7.12_4.pkg Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc create symlink for gcc (world) create symlink for g++ create symlink for g++ (world) create symlink for gcc12 create symlink for gcc12 (world) create symlink for g++12 create symlink for g++12 (world) create symlink for cpp12 create symlink for cpp12 (world) ===== Message from ccache-3.7.12_4: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. Installing /packages/All/gsl-2.7.1.pkg UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:28 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> antioch-0.4.0.156_14 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> antioch-0.4.0.156_14 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by antioch-0.4.0.156_14 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> antioch-0.4.0.156_14 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by antioch-0.4.0.156_14 for building => SHA256 Checksum OK for libantioch-antioch-v0.4.0-156-g90ffa43_GH0.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> antioch-0.4.0.156_14 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by antioch-0.4.0.156_14 for building ===> Extracting for antioch-0.4.0.156_14 => SHA256 Checksum OK for libantioch-antioch-v0.4.0-156-g90ffa43_GH0.tar.gz. Extracted Memory Use: 4.11M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for antioch-0.4.0.156_14 ===> Applying ports patches for antioch-0.4.0.156_14 from /xports/science/antioch/files SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> antioch-0.4.0.156_14 depends on file: /usr/local/include/metaphysicl/metaphysicl_version.h - found ===> antioch-0.4.0.156_14 depends on file: /usr/local/include/viennacl/vector.hpp - found ===> antioch-0.4.0.156_14 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found ===> antioch-0.4.0.156_14 depends on package: gmake>=4.3 - found ===> antioch-0.4.0.156_14 depends on package: autoconf>=2.71 - found ===> antioch-0.4.0.156_14 depends on package: automake>=1.16.5 - found ===> antioch-0.4.0.156_14 depends on executable: libtoolize - found ===> antioch-0.4.0.156_14 depends on file: /usr/local/bin/ccache - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> antioch-0.4.0.156_14 depends on shared library: libgsl.so - found (/usr/local/lib/libgsl.so) ===> antioch-0.4.0.156_14 depends on shared library: libOpenCL.so - found (/usr/local/lib/libOpenCL.so) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> antioch-0.4.0.156_14 depends on file: /usr/local/include/metaphysicl/metaphysicl_version.h - found ===> antioch-0.4.0.156_14 depends on file: /usr/local/include/viennacl/vector.hpp - found ===> antioch-0.4.0.156_14 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found ===> antioch-0.4.0.156_14 depends on package: gmake>=4.3 - found ===> antioch-0.4.0.156_14 depends on package: autoconf>=2.71 - found ===> antioch-0.4.0.156_14 depends on package: automake>=1.16.5 - found ===> antioch-0.4.0.156_14 depends on executable: libtoolize - found ===> antioch-0.4.0.156_14 depends on file: /usr/local/bin/ccache - found ===> antioch-0.4.0.156_14 depends on shared library: libgsl.so - found (/usr/local/lib/libgsl.so) ===> antioch-0.4.0.156_14 depends on shared library: libOpenCL.so - found (/usr/local/lib/libOpenCL.so) ===> Configuring for antioch-0.4.0.156_14 libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'build-aux'. libtoolize: copying file 'build-aux/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:12: warning: The macro `AC_CONFIG_HEADER' is obsolete. configure.ac:12: You should run autoupdate. ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from... configure.ac:12: the top level configure.ac:66: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:66: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... configure.ac:66: the top level configure.ac:74: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:74: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... configure.ac:74: the top level configure.ac:90: warning: The macro `AC_LANG_C' is obsolete. configure.ac:90: You should run autoupdate. ./lib/autoconf/c.m4:72: AC_LANG_C is expanded from... m4/common/acx_pthread.m4:48: ACX_PTHREAD is expanded from... m4/common/ax_check_cl.m4:39: AX_CHECK_CL is expanded from... m4/common/vexcl.m4:35: AX_PATH_VEXCL is expanded from... configure.ac:90: the top level configure.ac:90: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:90: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... m4/common/acx_pthread.m4:48: ACX_PTHREAD is expanded from... m4/common/ax_check_cl.m4:39: AX_CHECK_CL is expanded from... m4/common/vexcl.m4:35: AX_PATH_VEXCL is expanded from... configure.ac:90: the top level configure.ac:90: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:90: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ./lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from... m4/common/ax_check_cl.m4:39: AX_CHECK_CL is expanded from... m4/common/vexcl.m4:35: AX_PATH_VEXCL is expanded from... configure.ac:90: the top level configure.ac:90: warning: The macro `BOOST_THREADS' is obsolete. configure.ac:90: You should run autoupdate. m4/common/boost.m4:1206: BOOST_THREADS is expanded from... m4/common/vexcl.m4:35: AX_PATH_VEXCL is expanded from... configure.ac:90: the top level configure.ac:108: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:108: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... m4/common/eigen.m4:22: CONFIGURE_EIGEN is expanded from... configure.ac:108: the top level configure.ac:108: warning: The macro `AC_LANG_CPLUSPLUS' is obsolete. configure.ac:108: You should run autoupdate. ./lib/autoconf/c.m4:262: AC_LANG_CPLUSPLUS is expanded from... m4/common/eigen.m4:22: CONFIGURE_EIGEN is expanded from... configure.ac:108: the top level configure.ac:108: warning: AC_CHECK_HEADERS($EIGEN_INC/Eigen/Eigen): you should use literals ./lib/autoconf/headers.m4:217: AC_CHECK_HEADERS is expanded from... m4/common/eigen.m4:22: CONFIGURE_EIGEN is expanded from... configure.ac:108: the top level configure.ac:172: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:172: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... m4/common/coverage.m4:25: AX_CODE_COVERAGE is expanded from... configure.ac:172: the top level configure.ac:21: installing 'build-aux/compile' configure.ac:17: installing 'build-aux/config.guess' configure.ac:17: installing 'build-aux/config.sub' configure.ac:18: installing 'build-aux/install-sh' configure.ac:18: installing 'build-aux/missing' examples/Makefile.am: installing 'build-aux/depcomp' parallel-tests: installing 'build-aux/test-driver' configure: loading site script /xports/Templates/config.site checking build system type... x86_64-portbld-dragonfly6.5 checking host system type... x86_64-portbld-dragonfly6.5 checking target system type... x86_64-portbld-dragonfly6.5 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether gmake sets $(MAKE)... yes checking whether gmake supports nested variables... yes checking whether UID '0' is supported by ustar format... yes checking whether GID '0' is supported by ustar format... yes checking how to create a ustar tar archive... (cached) /usr/bin/tar checking whether gmake supports nested variables... (cached) yes checking how to print strings... printf checking whether gmake supports the include directive... yes (GNU style) checking for gcc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether cc accepts -g... yes checking for cc option to enable C11 features... none needed checking whether cc understands -c and -o together... yes checking dependency style of cc... gcc3 checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for fgrep... (cached) /usr/bin/fgrep checking for ld used by cc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 262144 checking how to convert x86_64-portbld-dragonfly6.5 file names to x86_64-portbld-dragonfly6.5 format... func_convert_file_noop checking how to convert x86_64-portbld-dragonfly6.5 file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from cc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for stdio.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for strings.h... (cached) yes checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking for unistd.h... (cached) yes checking for dlfcn.h... (cached) yes checking for objdir... .libs checking if cc supports -fno-rtti -fno-exceptions... no checking for cc option to produce PIC... -fPIC -DPIC checking if cc PIC flag -fPIC -DPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking if cc supports -c -o file.o... (cached) yes checking whether the cc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... dragonfly6.5 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking Major version... 0 checking Minor version... 5 checking Point version... 0 checking for gcc... (cached) cc checking whether the compiler supports GNU C... (cached) yes checking whether cc accepts -g... (cached) yes checking for cc option to enable C11 features... (cached) none needed checking whether cc understands -c and -o together... (cached) yes checking dependency style of cc... (cached) gcc3 checking whether the compiler supports GNU C++... yes checking whether c++ accepts -g... yes checking for c++ option to enable C++11 features... none needed checking dependency style of c++... gcc3 checking how to run the C++ preprocessor... c++ -E checking for ld used by c++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes checking for c++ option to produce PIC... -fPIC -DPIC checking if c++ PIC flag -fPIC -DPIC works... yes checking if c++ static flag -static works... yes checking if c++ supports -c -o file.o... yes checking if c++ supports -c -o file.o... (cached) yes checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... dragonfly6.5 ld.so checking how to hardcode library paths into programs... immediate checking for gfortran... no checking for g95... no checking for xlf95... no checking for f95... no checking for fort... no checking for ifort... no checking for ifc... no checking for efc... no checking for pgfortran... no checking for pgf95... no checking for lf95... no checking for ftn... no checking for nagfor... no checking for xlf90... no checking for f90... no checking for pgf90... no checking for pghpf... no checking for epcf90... no checking for g77... no checking for xlf... no checking for f77... no checking for frt... no checking for pgf77... no checking for cf77... no checking for fort77... no checking for fl32... no checking for af77... no checking whether the compiler supports GNU Fortran... no checking whether accepts -g... no checking CXXFLAGS for maximum warnings... -Wall checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... no checking whether pthreads work with -Kthread... no checking whether pthreads work with -kthread... no checking for the pthreads library -llthread... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for Boost headers version >= 1.47.0... no configure: cannot find Boost headers version >= 1.47.0 checking for the toolset name used by Boost for c++... unknown checking for the flags needed to use pthreads... -pthread configure: /vexcl/vexcl.hpp not found configure: /include/vexcl/vexcl.hpp not found checking whether we are using the Microsoft C++ compiler... no checking for CL/cl.h... yes checking for OpenCL/cl.h... no checking for windows.h... no checking for OpenCL library... -lOpenCL test: -ge: unexpected operator configure: Boost not available, not searching for the Boost chrono library configure: Boost not available, not searching for the Boost date_time library test: -ge: unexpected operator configure: Boost not available, not searching for the Boost filesystem library configure: Boost not available, not searching for the Boost system library test: -ge: unexpected operator test: -lt: unexpected operator configure: Boost not available, not searching for the Boost thread library checking whether we are using the Microsoft C++ compiler... (cached) no checking for CL/cl.h... (cached) yes checking for OpenCL/cl.h... (cached) no checking for windows.h... (cached) no checking for OpenCL library... (cached) -lOpenCL checking for vexcl/vexcl.hpp... no configure: optional VEXCL library not found checking whether c++ supports C++11 features by default... yes checking for viennacl/vector.hpp... yes checking whether we are using the Microsoft C++ compiler... (cached) no checking for CL/cl.h... (cached) yes checking for OpenCL/cl.h... (cached) no checking for windows.h... (cached) no checking for OpenCL library... (cached) -lOpenCL configure: Boost not available, not searching for boost/numeric/ublas/vector.hpp checking for /usr/local/include/eigen3/Eigen/Eigen... yes checking for Eigen/Dense... yes checking for eigen - version >= 3.1.2... yes <<< Configuring library with Eigen support >>> checking for metaphysicl/metaphysicl_version.h... yes checking for metaphysicl - version >= 0.0.0... yes checking for -lmetaphysicl linkage... yes checking for grvy.h... no configure: optional GRVY library not found checking for gsl-config... /usr/local/bin/gsl-config checking for gsl - version >= 1.10... yes checking for gsl/gsl_math.h... yes checking for -lgsl linkage... checking for gsl_sf_gamma in -lgsl... yes checking for cppunit-config... no checking for Cppunit - version >= 1.10.0... no checking whether c++ supports C++11 features by default... (cached) yes checking whether c++ supports C++11 -> decltype(this->f())... no configure: No compiler supporting trailing decltype(this->f()) was found checking for C++11 static_assert support... yes checking for git... no checking for doxygen... no configure: WARNING: doxygen not found - will not generate any doxygen documentation checking for perl... /usr/local/bin/perl find: /construction/science/antioch/antioch-0.4.0-156-g90ffa43/{src,test}: No such file or directory checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating doxygen/txt_common/about_vpath.page config.status: creating test/kinetics_unit_air_5sp.sh config.status: creating test/kinetics_unit_thrust_air_5sp.sh config.status: creating test/kinetics_vec_unit_air_5sp.sh config.status: creating test/kinetics_regression_air_5sp.sh config.status: creating test/kinetics_regression_vec_air_5sp.sh config.status: creating test/photochemical_rate_unit.sh config.status: creating test/parsing_xml.sh config.status: creating test/fail_parsing_xml_1.sh config.status: creating test/fail_parsing_xml_2.sh config.status: creating test/parsing_chemkin.sh config.status: creating test/kinetics_reactive_scheme_unit.sh config.status: creating test/nasa_evaluator_unit.sh config.status: creating test/ascii_parser_unit.sh config.status: creating test/kinetics_partial_order_unit.sh config.status: creating src/utilities/include/antioch/antioch_version.h config.status: creating antioch.pc config.status: creating doxygen/Makefile config.status: creating doxygen/antioch.dox config.status: creating Makefile config.status: creating share/Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating examples/Makefile config.status: creating antioch_config.h.tmp config.status: executing antioch_config.h commands config.status: creating antioch_config.h - prefix ANTIOCH for antioch_config.h.tmp defines config.status: executing depfiles commands config.status: executing libtool commands ----------------------------------- SUMMARY ----------------------------------- Package version............... : antioch-0.5.0 C++ compiler.................. : c++ C++ compiler flags............ : -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall Install dir................... : /usr/local Build user.................... : root Build host.................... : sting.dragonflybsd.org Configure date................ : 2023-07-30 05:41 Build architecture............ : x86_64-portbld-dragonfly6.5 Revision id................... : external Testing Options: Number of tuples............ : 2 CPPUnit..................... : no Optional Libraries: Eigen....................... : yes MetaPhysicL................. : yes METAPHYSICL_CPPFLAGS...... : -I/usr/local/include -I/usr/local/src METAPHYSICL_LDFLAGS....... : -L/usr/local/lib -Wl,-rpath,/usr/local/lib METAPHYSICL_LIBS.......... : -lmetaphysicl VexCL....................... : no ViennaCL.................... : yes VIENNACL_CPPFLAGS......... : -I/usr/local/include -pthread -pthread VIENNACL_LDFLAGS.......... : VIENNACL_LIBS............. : -lOpenCL -lm GRVY........................ : no GSL......................... : yes GSL_CPPFLAGS.............. : -I/usr/local/include GSL_LDFLAGS............... : -L/usr/local/lib -Wl,-rpath,/usr/local/lib GSL_LIBS.................. : -lgsl -lgslcblas ------------------------------------------------------------------------------- Configure complete, now type 'make' and then 'make install'. SUCCEEDED 00:00:50 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for antioch-0.4.0.156_14 gmake[1]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43' Makefile:1249: warning: ignoring prerequisites on suffix rule definition Usage: update_license.pl [OPTION] LICENSE-FILE SOURCE-FILES... OPTIONS: -S dir use dir as location of source-files -c2f_comment convert c++ comments in license header to F90 style -c2sh_comment convert c++ comments in license header to shell script style echo 'updated source license headers' >.license.stamp gmake all-recursive gmake[2]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43' Makefile:1249: warning: ignoring prerequisites on suffix rule definition Making all in src gmake[3]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/src' depbase=`echo core/src/chemical_mixture.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT core/src/chemical_mixture.lo -MD -MP -MF $depbase.Tpo -c -o core/src/chemical_mixture.lo core/src/chemical_mixture.C &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo parsing/src/ascii_parser.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT parsing/src/ascii_parser.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/ascii_parser.lo parsing/src/ascii_parser.C &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo parsing/src/blottner_parsing.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT parsing/src/blottner_parsing.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/blottner_parsing.lo parsing/src/blottner_parsing.C &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo parsing/src/cea_mixture_parsing.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT parsing/src/cea_mixture_parsing.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/cea_mixture_parsing.lo parsing/src/cea_mixture_parsing.C &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo parsing/src/cea_mixture_ascii_parsing.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ 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-I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT parsing/src/chemkin_parser.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/chemkin_parser.lo parsing/src/chemkin_parser.C &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo parsing/src/nasa_mixture_parsing.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT parsing/src/nasa_mixture_parsing.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/nasa_mixture_parsing.lo parsing/src/nasa_mixture_parsing.C &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo parsing/src/parser_base.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT parsing/src/parser_base.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/parser_base.lo parsing/src/parser_base.C &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo parsing/src/read_reaction_set_data.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT parsing/src/read_reaction_set_data.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/read_reaction_set_data.lo parsing/src/read_reaction_set_data.C &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo parsing/src/species_parsing.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT parsing/src/species_parsing.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/species_parsing.lo parsing/src/species_parsing.C &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo parsing/src/sutherland_parsing.lo | sed 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-I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT parsing/src/transport_species_parsing.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/transport_species_parsing.lo parsing/src/transport_species_parsing.C &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo parsing/src/xml_parser.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT parsing/src/xml_parser.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/xml_parser.lo parsing/src/xml_parser.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT parsing/src/cea_mixture_ascii_parsing.lo -MD -MP -MF parsing/src/.deps/cea_mixture_ascii_parsing.Tpo -c parsing/src/cea_mixture_ascii_parsing.C -fPIC -DPIC -o parsing/src/.libs/cea_mixture_ascii_parsing.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT parsing/src/transport_species_parsing.lo -MD -MP -MF parsing/src/.deps/transport_species_parsing.Tpo -c parsing/src/transport_species_parsing.C -fPIC -DPIC -o parsing/src/.libs/transport_species_parsing.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT core/src/chemical_mixture.lo -MD -MP -MF core/src/.deps/chemical_mixture.Tpo -c core/src/chemical_mixture.C -fPIC -DPIC -o core/src/.libs/chemical_mixture.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT parsing/src/cea_mixture_parsing.lo -MD -MP -MF parsing/src/.deps/cea_mixture_parsing.Tpo -c parsing/src/cea_mixture_parsing.C -fPIC -DPIC -o parsing/src/.libs/cea_mixture_parsing.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT parsing/src/blottner_parsing.lo -MD -MP -MF parsing/src/.deps/blottner_parsing.Tpo -c parsing/src/blottner_parsing.C -fPIC -DPIC -o parsing/src/.libs/blottner_parsing.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT parsing/src/ascii_parser.lo -MD -MP -MF parsing/src/.deps/ascii_parser.Tpo -c parsing/src/ascii_parser.C -fPIC -DPIC -o parsing/src/.libs/ascii_parser.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT parsing/src/read_reaction_set_data.lo -MD -MP -MF parsing/src/.deps/read_reaction_set_data.Tpo -c parsing/src/read_reaction_set_data.C -fPIC -DPIC -o parsing/src/.libs/read_reaction_set_data.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT parsing/src/species_parsing.lo -MD -MP -MF parsing/src/.deps/species_parsing.Tpo -c parsing/src/species_parsing.C -fPIC -DPIC -o parsing/src/.libs/species_parsing.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT parsing/src/nasa_mixture_parsing.lo -MD -MP -MF parsing/src/.deps/nasa_mixture_parsing.Tpo -c parsing/src/nasa_mixture_parsing.C -fPIC -DPIC -o parsing/src/.libs/nasa_mixture_parsing.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT parsing/src/chemkin_parser.lo -MD -MP -MF parsing/src/.deps/chemkin_parser.Tpo -c parsing/src/chemkin_parser.C -fPIC -DPIC -o parsing/src/.libs/chemkin_parser.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT parsing/src/parser_base.lo -MD -MP -MF parsing/src/.deps/parser_base.Tpo -c parsing/src/parser_base.C -fPIC -DPIC -o parsing/src/.libs/parser_base.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT parsing/src/sutherland_parsing.lo -MD -MP -MF parsing/src/.deps/sutherland_parsing.Tpo -c parsing/src/sutherland_parsing.C -fPIC -DPIC -o parsing/src/.libs/sutherland_parsing.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT parsing/src/xml_parser.lo -MD -MP -MF parsing/src/.deps/xml_parser.Tpo -c parsing/src/xml_parser.C -fPIC -DPIC -o parsing/src/.libs/xml_parser.o depbase=`echo transport/src/transport_mixture.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT transport/src/transport_mixture.lo -MD -MP -MF $depbase.Tpo -c -o transport/src/transport_mixture.lo transport/src/transport_mixture.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT transport/src/transport_mixture.lo -MD -MP -MF transport/src/.deps/transport_mixture.Tpo -c transport/src/transport_mixture.C -fPIC -DPIC -o transport/src/.libs/transport_mixture.o depbase=`echo utilities/src/antioch_version.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT utilities/src/antioch_version.lo -MD -MP -MF $depbase.Tpo -c -o utilities/src/antioch_version.lo utilities/src/antioch_version.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT utilities/src/antioch_version.lo -MD -MP -MF utilities/src/.deps/antioch_version.Tpo -c utilities/src/antioch_version.C -fPIC -DPIC -o utilities/src/.libs/antioch_version.o depbase=`echo utilities/src/gsl_spliner_impl.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT utilities/src/gsl_spliner_impl.lo -MD -MP -MF $depbase.Tpo -c -o utilities/src/gsl_spliner_impl.lo utilities/src/gsl_spliner_impl.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT utilities/src/gsl_spliner_impl.lo -MD -MP -MF utilities/src/.deps/gsl_spliner_impl.Tpo -c utilities/src/gsl_spliner_impl.C -fPIC -DPIC -o utilities/src/.libs/gsl_spliner_impl.o depbase=`echo utilities/src/gsl_spliner_shim.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT utilities/src/gsl_spliner_shim.lo -MD -MP -MF $depbase.Tpo -c -o utilities/src/gsl_spliner_shim.lo utilities/src/gsl_spliner_shim.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT utilities/src/gsl_spliner_shim.lo -MD -MP -MF utilities/src/.deps/gsl_spliner_shim.Tpo -c utilities/src/gsl_spliner_shim.C -fPIC -DPIC -o utilities/src/.libs/gsl_spliner_shim.o depbase=`echo utilities/src/string_utils.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT utilities/src/string_utils.lo -MD -MP -MF $depbase.Tpo -c -o utilities/src/string_utils.lo utilities/src/string_utils.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT utilities/src/string_utils.lo -MD -MP -MF utilities/src/.deps/string_utils.Tpo -c utilities/src/string_utils.C -fPIC -DPIC -o utilities/src/.libs/string_utils.o depbase=`echo apps/version.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -pthread -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -MT apps/version.o -MD -MP -MF $depbase.Tpo -c -o apps/version.o apps/version.C &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CXX --mode=link c++ -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -L/usr/local/lib -Wl,-rpath,/usr/local/lib -o libantioch.la -rpath /usr/local/lib core/src/chemical_mixture.lo parsing/src/ascii_parser.lo parsing/src/blottner_parsing.lo parsing/src/cea_mixture_parsing.lo parsing/src/cea_mixture_ascii_parsing.lo parsing/src/chemkin_parser.lo parsing/src/nasa_mixture_parsing.lo parsing/src/parser_base.lo parsing/src/read_reaction_set_data.lo parsing/src/species_parsing.lo parsing/src/sutherland_parsing.lo parsing/src/transport_species_parsing.lo parsing/src/xml_parser.lo transport/src/transport_mixture.lo utilities/src/antioch_version.lo utilities/src/gsl_spliner_impl.lo utilities/src/gsl_spliner_shim.lo utilities/src/string_utils.lo -lgsl -lgslcblas -lOpenCL -lm libtool: link: c++ -fPIC -DPIC -shared -nostdlib /usr/lib/crti.o /usr/lib/gcc80/crtbeginS.o core/src/.libs/chemical_mixture.o parsing/src/.libs/ascii_parser.o parsing/src/.libs/blottner_parsing.o parsing/src/.libs/cea_mixture_parsing.o parsing/src/.libs/cea_mixture_ascii_parsing.o parsing/src/.libs/chemkin_parser.o parsing/src/.libs/nasa_mixture_parsing.o parsing/src/.libs/parser_base.o parsing/src/.libs/read_reaction_set_data.o parsing/src/.libs/species_parsing.o parsing/src/.libs/sutherland_parsing.o parsing/src/.libs/transport_species_parsing.o parsing/src/.libs/xml_parser.o transport/src/.libs/transport_mixture.o utilities/src/.libs/antioch_version.o utilities/src/.libs/gsl_spliner_impl.o utilities/src/.libs/gsl_spliner_shim.o utilities/src/.libs/string_utils.o -L/usr/local/lib -lgsl -lgslcblas -lOpenCL -L/usr/lib/gcc80 -lstdc++ -lm -lc -lgcc -lgcc_pic /usr/lib/gcc80/crtendS.o /usr/lib/crtn.o -O2 -Wl,-rpath -Wl,/usr/local/lib -Wl,-soname -Wl,libantioch.so.0 -o .libs/libantioch.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libantioch.so.0" && ln -s "libantioch.so.0.0.0" "libantioch.so.0") libtool: link: (cd ".libs" && rm -f "libantioch.so" && ln -s "libantioch.so.0.0.0" "libantioch.so") libtool: link: ( cd ".libs" && rm -f "libantioch.la" && ln -s "../libantioch.la" "libantioch.la" ) /bin/sh ../libtool --tag=CXX --mode=link c++ -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -L/usr/local/lib -Wl,-rpath,/usr/local/lib -o antioch_version apps/version.o libantioch.la -lgsl -lgslcblas -lOpenCL -lm libtool: link: c++ -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wl,-rpath -Wl,/usr/local/lib -o .libs/antioch_version apps/version.o -L/usr/local/lib ./.libs/libantioch.so -lm -lgsl -lgslcblas -lOpenCL -Wl,-rpath -Wl,/usr/local/lib gmake[3]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/src' Making all in test gmake[3]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/test' gmake[3]: Nothing to be done for 'all'. gmake[3]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/test' Making all in doxygen gmake[3]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/doxygen' gmake[3]: Nothing to be done for 'all'. gmake[3]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/doxygen' Making all in share gmake[3]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/share' gmake[3]: Nothing to be done for 'all'. gmake[3]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/share' gmake[3]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43' Makefile:1249: warning: ignoring prerequisites on suffix rule definition gmake[3]: Nothing to be done for 'all-am'. gmake[3]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43' gmake[2]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43' gmake[1]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43' SUCCEEDED 00:00:58 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for antioch-0.4.0.156_14 ===> Generating temporary packing list gmake[1]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43' Makefile:1249: warning: ignoring prerequisites on suffix rule definition gmake install-recursive gmake[2]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43' Makefile:1249: warning: ignoring prerequisites on suffix rule definition Making install in src gmake[3]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/src' gmake[4]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/src' /bin/mkdir -p '/construction/science/antioch/stage/usr/local/lib' /bin/sh ../libtool --mode=install /usr/bin/install -c libantioch.la '/construction/science/antioch/stage/usr/local/lib' libtool: install: /usr/bin/install -c .libs/libantioch.so.0.0.0 /construction/science/antioch/stage/usr/local/lib/libantioch.so.0.0.0 libtool: install: (cd /construction/science/antioch/stage/usr/local/lib && { ln -s -f libantioch.so.0.0.0 libantioch.so.0 || { rm -f libantioch.so.0 && ln -s libantioch.so.0.0.0 libantioch.so.0; }; }) libtool: install: (cd /construction/science/antioch/stage/usr/local/lib && { ln -s -f libantioch.so.0.0.0 libantioch.so || { rm -f libantioch.so && ln -s libantioch.so.0.0.0 libantioch.so; }; }) libtool: install: /usr/bin/install -c .libs/libantioch.lai /construction/science/antioch/stage/usr/local/lib/libantioch.la libtool: warning: remember to run 'libtool --finish /usr/local/lib' /bin/mkdir -p '/construction/science/antioch/stage/usr/local/bin' /bin/sh ../libtool --mode=install install -s -m 555 antioch_version '/construction/science/antioch/stage/usr/local/bin' libtool: warning: 'libantioch.la' has not been installed in '/usr/local/lib' libtool: install: install -m 555 -s .libs/antioch_version /construction/science/antioch/stage/usr/local/bin/antioch_version /bin/mkdir -p '/construction/science/antioch/stage/usr/local/include/antioch' install -m 0644 core/include/antioch/chemical_species.h core/include/antioch/chemical_mixture.h core/include/antioch/kinetics_conditions.h units/include/antioch/converter.h units/include/antioch/insi.h units/include/antioch/siprefix.h units/include/antioch/unit_base.h units/include/antioch/unit_defs.h units/include/antioch/units.h units/include/antioch/unit_store.h particles_flux/include/antioch/sigma_bin_converter.h particles_flux/include/antioch/particle_flux.h kinetics/include/antioch/kinetics_enum.h kinetics/include/antioch/kinetics_type.h kinetics/include/antioch/constant_rate.h kinetics/include/antioch/hercourtessen_rate.h kinetics/include/antioch/berthelot_rate.h kinetics/include/antioch/arrhenius_rate.h kinetics/include/antioch/berthelothercourtessen_rate.h kinetics/include/antioch/kooij_rate.h kinetics/include/antioch/vanthoff_rate.h kinetics/include/antioch/photochemical_rate.h kinetics/include/antioch/reaction_enum.h kinetics/include/antioch/reaction.h kinetics/include/antioch/elementary_reaction.h kinetics/include/antioch/duplicate_reaction.h kinetics/include/antioch/threebody_reaction.h kinetics/include/antioch/falloff_reaction.h kinetics/include/antioch/falloff_threebody_reaction.h kinetics/include/antioch/lindemann_falloff.h kinetics/include/antioch/troe_falloff.h kinetics/include/antioch/reaction_set.h kinetics/include/antioch/reaction_parsing.h kinetics/include/antioch/kinetics_parsing.h kinetics/include/antioch/kinetics_evaluator.h parsing/include/antioch/tinyxml2.h parsing/include/antioch/tinyxml2_imp.h parsing/include/antioch/read_reaction_set_data.h parsing/include/antioch/read_reaction_set_data_xml.h parsing/include/antioch/blottner_parsing.h '/construction/science/antioch/stage/usr/local/include/antioch' install -m 0644 parsing/include/antioch/sutherland_parsing.h parsing/include/antioch/cea_mixture_parsing.h parsing/include/antioch/nasa_mixture_parsing.h parsing/include/antioch/cea_mixture_ascii_parsing.h parsing/include/antioch/species_parsing.h parsing/include/antioch/transport_species_parsing.h parsing/include/antioch/transport_species_ascii_parsing.h parsing/include/antioch/nasa_mixture_ascii_parsing.h parsing/include/antioch/parsing_enum.h parsing/include/antioch/xml_parser.h parsing/include/antioch/chemkin_definitions.h parsing/include/antioch/chemkin_parser.h parsing/include/antioch/ascii_parser.h parsing/include/antioch/parser_base.h parsing/include/antioch/constant_lewis_diffusivity_building.h parsing/include/antioch/eucken_thermal_conductivity_building.h parsing/include/antioch/kinetics_theory_viscosity_building.h parsing/include/antioch/kinetics_theory_thermal_conductivity_building.h parsing/include/antioch/ascii_parser_instantiation_macro.h parsing/include/antioch/blottner_parsing_instantiate_macro.h parsing/include/antioch/cea_mixture_ascii_parsing_instantiate_macro.h parsing/include/antioch/nasa_mixture_parsing_instantiate_macro.h parsing/include/antioch/read_reaction_set_data_instantiate_macro.h parsing/include/antioch/species_parsing_instantiation_macro.h parsing/include/antioch/sutherland_parsing_instantiate_macro.h parsing/include/antioch/xml_parser_instantiation_macro.h thermo/include/antioch/nasa_curve_fit_base.h thermo/include/antioch/nasa7_curve_fit.h thermo/include/antioch/nasa9_curve_fit.h thermo/include/antioch/cea_curve_fit.h thermo/include/antioch/temp_cache.h thermo/include/antioch/nasa_mixture.h thermo/include/antioch/nasa_evaluator.h thermo/include/antioch/cea_mixture.h thermo/include/antioch/cea_evaluator.h thermo/include/antioch/stat_mech_thermo.h thermo/include/antioch/ideal_gas_micro_thermo.h thermo/include/antioch/macro_micro_thermo_base.h transport/include/antioch/mixture_transport_base.h transport/include/antioch/mixture_viscosity.h '/construction/science/antioch/stage/usr/local/include/antioch' install -m 0644 transport/include/antioch/mixture_conductivity.h transport/include/antioch/mixture_diffusion.h transport/include/antioch/wilke_mixture.h transport/include/antioch/wilke_evaluator.h transport/include/antioch/mixture_averaged_transport_mixture.h transport/include/antioch/mixture_averaged_transport_evaluator.h transport/include/antioch/lennard_jones_potential.h transport/include/antioch/stockmayer_potential.h transport/include/antioch/transport_mixture.h transport/include/antioch/transport_species.h viscosity/include/antioch/species_viscosity_base.h viscosity/include/antioch/blottner_viscosity.h viscosity/include/antioch/sutherland_viscosity.h viscosity/include/antioch/kinetics_theory_viscosity.h diffusion/include/antioch/constant_lewis_diffusivity.h diffusion/include/antioch/molecular_binary_diffusion.h diffusion/include/antioch/binary_diffusion_base.h diffusion/include/antioch/species_diffusion_base.h diffusion/include/antioch/diffusion_traits.h thermal_conduction/include/antioch/eucken_thermal_conductivity.h thermal_conduction/include/antioch/kinetics_theory_thermal_conductivity.h thermal_conduction/include/antioch/rotational_relaxation.h thermal_conduction/include/antioch/species_conductivity_base.h thermal_conduction/include/antioch/conductivity_traits.h utilities/include/antioch/antioch_exceptions.h utilities/include/antioch/antioch_asserts.h utilities/include/antioch/cmath_shims.h utilities/include/antioch/default_filename.h utilities/include/antioch/eigen_utils.h utilities/include/antioch/eigen_utils_decl.h utilities/include/antioch/input_utils.h utilities/include/antioch/math_constants.h utilities/include/antioch/metaprogramming.h utilities/include/antioch/metaprogramming_decl.h utilities/include/antioch/metaphysicl_utils.h utilities/include/antioch/metaphysicl_utils_decl.h utilities/include/antioch/physical_constants.h utilities/include/antioch/string_utils.h utilities/include/antioch/valarray_utils.h utilities/include/antioch/valarray_utils_decl.h '/construction/science/antioch/stage/usr/local/include/antioch' install -m 0644 utilities/include/antioch/vector_utils.h utilities/include/antioch/vector_utils_decl.h utilities/include/antioch/vexcl_utils.h utilities/include/antioch/vexcl_utils_decl.h utilities/include/antioch/gsl_spliner.h utilities/include/antioch/gsl_spliner_impl.h utilities/include/antioch/gsl_spliner_shim.h utilities/include/antioch/gsl_spliner_policy.h utilities/include/antioch/antioch_numeric_type_instantiate_macro.h ../src/utilities/include/antioch/antioch_version.h '/construction/science/antioch/stage/usr/local/include/antioch' gmake[4]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/src' gmake[3]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/src' Making install in test gmake[3]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/test' gmake[4]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/test' gmake[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/construction/science/antioch/stage/usr/local/include/antioch' install -m 0644 common/testing_utils.h standard_unit/reaction_rate_test_base.h standard_unit/reaction_rate_vector_test_base.h standard_unit/arrhenius_rate_test_helper.h standard_unit/arrhenius_rate_vector_test_base.h standard_unit/nasa_test_helper.h standard_unit/nasa7_thermo_test_base.h standard_unit/nasa9_thermo_test_base.h standard_unit/thermo_vector_test_base.h standard_unit/nasa7_mixture_vector_test_base.h standard_unit/nasa9_mixture_vector_test_base.h gsl_unit/gsl_spliner_test_base.h '/construction/science/antioch/stage/usr/local/include/antioch' gmake[4]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/test' gmake[3]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/test' Making install in doxygen gmake[3]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/doxygen' gmake[4]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/doxygen' gmake[4]: Nothing to be done for 'install-exec-am'. gmake[4]: Nothing to be done for 'install-data-am'. gmake[4]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/doxygen' gmake[3]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/doxygen' Making install in share gmake[3]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/share' gmake[4]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/share' gmake[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/construction/science/antioch/stage/usr/local/share/aclocal' install -m 0644 ../share/aclocal/antioch.m4 '/construction/science/antioch/stage/usr/local/share/aclocal' /bin/mkdir -p '/construction/science/antioch/stage/usr/local/share/antioch/default_files' install -m 0644 ../share/antioch_default_files/antioch_default_blottner_coefficient.dat ../share/antioch_default_files/antioch_default_chemical_mixture.dat ../share/antioch_default_files/antioch_default_chemical_species.dat ../share/antioch_default_files/antioch_default_electronic_data.dat ../share/antioch_default_files/antioch_default_sutherland_coefficient.dat ../share/antioch_default_files/antioch_default_thermo_data.dat ../share/antioch_default_files/antioch_default_thermo_data_NASA7.dat ../share/antioch_default_files/antioch_default_transport_species_data.dat ../share/antioch_default_files/antioch_default_vibrational_data.dat '/construction/science/antioch/stage/usr/local/share/antioch/default_files' /bin/mkdir -p '/construction/science/antioch/stage/usr/local/share/antioch/xml_inputs' install -m 0644 ../share/xml_inputs/gri30.xml ../share/xml_inputs/nasa9_thermo.xml '/construction/science/antioch/stage/usr/local/share/antioch/xml_inputs' gmake[4]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/share' gmake[3]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43/share' gmake[3]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43' Makefile:1249: warning: ignoring prerequisites on suffix rule definition gmake[4]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43' Makefile:1249: warning: ignoring prerequisites on suffix rule definition gmake[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/construction/science/antioch/stage/usr/local/include' install -m 0644 antioch_config.h '/construction/science/antioch/stage/usr/local/include' /bin/mkdir -p '/construction/science/antioch/stage/usr/local/lib/pkgconfig' install -m 0644 antioch.pc '/construction/science/antioch/stage/usr/local/lib/pkgconfig' gmake install-data-hook gmake[5]: Entering directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43' Makefile:1249: warning: ignoring prerequisites on suffix rule definition cd /construction/science/antioch/stage/usr/local/include && cat antioch_config.h | /usr/bin/sed "s,\(define ANTIOCH_DEFAULT_FILES_PATH\).*$,\1 "\"/usr/local/share/antioch_default_files/\""," > config.replaced ; \ cd /construction/science/antioch/stage/usr/local/include && mv config.replaced antioch_config.h ; gmake[5]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43' gmake[4]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43' gmake[3]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43' gmake[2]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43' gmake[1]: Leaving directory '/construction/science/antioch/antioch-0.4.0-156-g90ffa43' ===> File(s) found in lib/pkgconfig while correct path is libdata/pkgconfig Applying fix but consider using USES= pathfix or adjust install path ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for antioch-0.4.0.156_14 file sizes/checksums [160]: 0% file sizes/checksums [160]: 62% file sizes/checksums [160]: 100% Service unavailablepacking files [160]: 0% packing files [160]: 62% packing files [160]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:01 TOTAL TIME 00:02:20