------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 FLAVOR=py39 UNAME_r=6.5 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/construction/math/py-openTSNE XDG_CONFIG_HOME=/construction/math/py-openTSNE XDG_CACHE_HOME=/construction/math/py-openTSNE/.cache HOME=/construction/math/py-openTSNE TMPDIR="/tmp" PATH=/construction/math/py-openTSNE/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/math/py-openTSNE/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 CMAKE_PREFIX_PATH="/usr/local" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/math/py-openTSNE XDG_CONFIG_HOME=/construction/math/py-openTSNE XDG_CACHE_HOME=/construction/math/py-openTSNE/.cache HOME=/construction/math/py-openTSNE TMPDIR="/tmp" PATH=/construction/math/py-openTSNE/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/math/py-openTSNE/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/math/py-openTSNE/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=6.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/openTSNE" EXAMPLESDIR="share/examples/openTSNE" DATADIR="share/openTSNE" WWWDIR="www/openTSNE" ETCDIR="etc/openTSNE" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/openTSNE DOCSDIR=/usr/local/share/doc/openTSNE EXAMPLESDIR=/usr/local/share/examples/openTSNE WWWDIR=/usr/local/www/openTSNE ETCDIR=/usr/local/etc/openTSNE SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes DFLY_STING_XFAIL=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_COMPRESSION_FORMAT=.tgz DEVELOPER=1 WITH_CCACHE_BUILD=yes CCACHE_DIR=/ccache UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600503 OSVERSION=9999999 OSREL=6.5 _OSRELEASE=6.5-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=13 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/metis-5.1.0_9.pkg ===== Message from metis-5.1.0_9: -- ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing Installing /packages/All/indexinfo-0.3.1.pkg Installing /packages/All/gmp-6.2.1.pkg Installing /packages/All/mpfr-4.2.0,1.pkg Installing /packages/All/mpc-1.2.1.pkg UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/liblz4-1.9.4,1.pkg Installing /packages/All/zstd-1.5.4.pkg Installing /packages/All/gettext-runtime-0.21.1.pkg Installing /packages/All/binutils-2.40_4,1.pkg Installing /packages/All/gcc12-12.2.0_5.pkg ===== Message from gcc12-12.2.0_5: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc12 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.20,1.pkg Installing /packages/All/suitesparse-config-7.0.1.pkg Installing /packages/All/suitesparse-amd-3.0.3.pkg Installing /packages/All/suitesparse-camd-3.0.3.pkg Installing /packages/All/suitesparse-colamd-3.0.3.pkg Installing /packages/All/suitesparse-ccolamd-3.0.3.pkg Installing /packages/All/suitesparse-cholmod-4.0.3.pkg Installing /packages/All/suitesparse-umfpack-6.1.0.pkg Installing /packages/All/libffi-3.4.4.pkg Installing /packages/All/expat-2.5.0.pkg Installing /packages/All/mpdecimal-2.5.1.pkg Installing /packages/All/ncurses-6.3.pkg ===== Message from ncurses-6.3: -- To get the terminfo database please install the terminfo-db package: pkg install terminfo-db Installing /packages/All/readline-8.2.1.pkg Installing /packages/All/openssl-1.1.1u,1.pkg Installing /packages/All/python39-3.9.17.pkg ===== Message from python39-3.9.17: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 Installing /packages/All/py39-setuptools-63.1.0.pkg Installing /packages/All/py39-numpy-1.24.1,1.pkg Installing /packages/All/py39-wheel-0.40.0.pkg Installing /packages/All/py39-cython-0.29.33.pkg Installing /packages/All/py39-packaging-23.0_1.pkg Installing /packages/All/py39-tomli-2.0.1_1.pkg Installing /packages/All/py39-pyproject_hooks-1.0.0_1.pkg Installing /packages/All/py39-build-0.10.0_1.pkg Installing /packages/All/py39-installer-0.6.0_1.pkg Installing /packages/All/ccache-3.7.12_4.pkg Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc create symlink for gcc (world) create symlink for g++ create symlink for g++ (world) create symlink for gcc12 create symlink for gcc12 (world) create symlink for g++12 create symlink for g++12 (world) create symlink for cpp12 create symlink for cpp12 (world) ===== Message from ccache-3.7.12_4: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. Installing /packages/All/fftw3-3.3.10_2.pkg Installing /packages/All/blas-3.11.0.pkg Installing /packages/All/py39-scipy-1.10.0.pkg Installing /packages/All/py39-joblib-1.1.0.pkg Installing /packages/All/py39-threadpoolctl-3.1.0.pkg Installing /packages/All/py39-scikit-learn-1.2.2.pkg UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:36 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py39-openTSNE-0.7.1 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py39-openTSNE-0.7.1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-openTSNE-0.7.1 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py39-openTSNE-0.7.1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-openTSNE-0.7.1 for building => SHA256 Checksum OK for openTSNE-0.7.1.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py39-openTSNE-0.7.1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-openTSNE-0.7.1 for building ===> Extracting for py39-openTSNE-0.7.1 => SHA256 Checksum OK for openTSNE-0.7.1.tar.gz. Extracted Memory Use: 5.04M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py39-openTSNE-0.7.1 ===> Applying ports patches for py39-openTSNE-0.7.1 from /xports/math/py-openTSNE/files ===> Applying dragonfly patches for py39-openTSNE-0.7.1 from /xports/math/py-openTSNE/dragonfly SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py39-openTSNE-0.7.1 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> py39-openTSNE-0.7.1 depends on package: py39-wheel>0 - found ===> py39-openTSNE-0.7.1 depends on executable: cython-3.9 - found ===> py39-openTSNE-0.7.1 depends on file: /usr/local/bin/python3.9 - found ===> py39-openTSNE-0.7.1 depends on package: py39-build>=0 - found ===> py39-openTSNE-0.7.1 depends on package: py39-installer>=0 - found ===> py39-openTSNE-0.7.1 depends on file: /usr/local/bin/ccache - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> py39-openTSNE-0.7.1 depends on shared library: libfftw3.so - found (/usr/local/lib/libfftw3.so) SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py39-openTSNE-0.7.1 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> py39-openTSNE-0.7.1 depends on package: py39-wheel>0 - found ===> py39-openTSNE-0.7.1 depends on executable: cython-3.9 - found ===> py39-openTSNE-0.7.1 depends on file: /usr/local/bin/python3.9 - found ===> py39-openTSNE-0.7.1 depends on package: py39-build>=0 - found ===> py39-openTSNE-0.7.1 depends on package: py39-installer>=0 - found ===> py39-openTSNE-0.7.1 depends on file: /usr/local/bin/ccache - found ===> py39-openTSNE-0.7.1 depends on shared library: libfftw3.so - found (/usr/local/lib/libfftw3.so) ===> Configuring for py39-openTSNE-0.7.1 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py39-openTSNE-0.7.1 * Getting build dependencies for wheel... FFTW3 header files found. Using FFTW implementation of FFT. * Building wheel... FFTW3 header files found. Using FFTW implementation of FFT. running bdist_wheel running build running build_py creating build creating build/lib.dragonfly-6.5-x86_64-cpython-39 creating build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE copying openTSNE/__init__.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE copying openTSNE/affinity.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE copying openTSNE/callbacks.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE copying openTSNE/initialization.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE copying openTSNE/metrics.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE copying openTSNE/nearest_neighbors.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE copying openTSNE/sklearn.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE copying openTSNE/tsne.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE copying openTSNE/utils.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE copying openTSNE/version.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE creating build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE/_matrix_mul copying openTSNE/_matrix_mul/__init__.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE/_matrix_mul creating build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE/dependencies copying openTSNE/dependencies/__init__.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE/dependencies creating build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE/dependencies/annoy copying openTSNE/dependencies/annoy/__init__.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE/dependencies/annoy running build_ext Compiling openTSNE/_matrix_mul/matrix_mul_fftw3.pyx because it changed. [1/1] Cythonizing openTSNE/_matrix_mul/matrix_mul_fftw3.pyx cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/include -I/usr/local/Library/include -c ./tmp1h4_56nr/omp.c -o ./tmp1h4_56nr/omp.o cc ./tmp1h4_56nr/omp.o -o ./tmp1h4_56nr/omp.c Found openmp. Compiling with openmp flags... building 'openTSNE.quad_tree' extension creating build/temp.dragonfly-6.5-x86_64-cpython-39 creating build/temp.dragonfly-6.5-x86_64-cpython-39/openTSNE cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/include -I/usr/local/Library/include -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c openTSNE/quad_tree.cpp -o build/temp.dragonfly-6.5-x86_64-cpython-39/openTSNE/quad_tree.o -O3 -ffast-math -fno-finite-math-only -fno-associative-math -march=native -fopenmp c++ -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -L/usr/local/lib -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-6.5-x86_64-cpython-39/openTSNE/quad_tree.o -L/usr/local/lib -L/usr/local/Library/lib -L/usr/local/lib -o build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE/quad_tree.cpython-39.so -fopenmp building 'openTSNE._tsne' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/include -I/usr/local/Library/include -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c openTSNE/_tsne.cpp -o build/temp.dragonfly-6.5-x86_64-cpython-39/openTSNE/_tsne.o -O3 -ffast-math -fno-finite-math-only -fno-associative-math -march=native -fopenmp In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940, from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5, from openTSNE/_tsne.cpp:774: /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ c++ -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -L/usr/local/lib -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-6.5-x86_64-cpython-39/openTSNE/_tsne.o -L/usr/local/lib -L/usr/local/Library/lib -L/usr/local/lib -o build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE/_tsne.cpython-39.so -fopenmp building 'openTSNE.kl_divergence' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/include -I/usr/local/Library/include -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c openTSNE/kl_divergence.cpp -o build/temp.dragonfly-6.5-x86_64-cpython-39/openTSNE/kl_divergence.o -O3 -ffast-math -fno-finite-math-only -fno-associative-math -march=native -fopenmp In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940, from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5, from openTSNE/kl_divergence.cpp:774: /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ c++ -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -L/usr/local/lib -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-6.5-x86_64-cpython-39/openTSNE/kl_divergence.o -L/usr/local/lib -L/usr/local/Library/lib -L/usr/local/lib -o build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE/kl_divergence.cpython-39.so -fopenmp building 'openTSNE.dependencies.annoy.annoylib' extension creating build/temp.dragonfly-6.5-x86_64-cpython-39/openTSNE/dependencies creating build/temp.dragonfly-6.5-x86_64-cpython-39/openTSNE/dependencies/annoy cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/include -I/usr/local/Library/include -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c openTSNE/dependencies/annoy/annoymodule.cc -o build/temp.dragonfly-6.5-x86_64-cpython-39/openTSNE/dependencies/annoy/annoymodule.o -std=c++14 -DANNOYLIB_MULTITHREADED_BUILD -O3 -ffast-math -fno-finite-math-only -fno-associative-math -march=native -fopenmp c++ -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -L/usr/local/lib -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-6.5-x86_64-cpython-39/openTSNE/dependencies/annoy/annoymodule.o -L/usr/local/lib -L/usr/local/Library/lib -L/usr/local/lib -o build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE/dependencies/annoy/annoylib.cpython-39.so -fopenmp building 'openTSNE._matrix_mul.matrix_mul' extension creating build/temp.dragonfly-6.5-x86_64-cpython-39/openTSNE/_matrix_mul cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/include -I/usr/local/Library/include -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c openTSNE/_matrix_mul/matrix_mul_fftw3.cpp -o build/temp.dragonfly-6.5-x86_64-cpython-39/openTSNE/_matrix_mul/matrix_mul_fftw3.o -O3 -ffast-math -fno-finite-math-only -fno-associative-math -march=native -fopenmp In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940, from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5, from openTSNE/_matrix_mul/matrix_mul_fftw3.cpp:777: /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ c++ -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -L/usr/local/lib -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-6.5-x86_64-cpython-39/openTSNE/_matrix_mul/matrix_mul_fftw3.o -L/usr/local/lib -L/usr/local/Library/lib -L/usr/local/lib -lfftw3 -o build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE/_matrix_mul/matrix_mul.cpython-39.so -fopenmp installing to build/bdist.dragonfly-6.5-x86_64/wheel running install running install_lib creating build/bdist.dragonfly-6.5-x86_64 creating build/bdist.dragonfly-6.5-x86_64/wheel creating build/bdist.dragonfly-6.5-x86_64/wheel/openTSNE copying build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE/__init__.py -> build/bdist.dragonfly-6.5-x86_64/wheel/openTSNE copying build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE/affinity.py -> build/bdist.dragonfly-6.5-x86_64/wheel/openTSNE copying build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE/callbacks.py -> build/bdist.dragonfly-6.5-x86_64/wheel/openTSNE copying build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE/initialization.py -> build/bdist.dragonfly-6.5-x86_64/wheel/openTSNE copying build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE/metrics.py -> build/bdist.dragonfly-6.5-x86_64/wheel/openTSNE copying build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE/nearest_neighbors.py -> build/bdist.dragonfly-6.5-x86_64/wheel/openTSNE copying build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE/sklearn.py -> build/bdist.dragonfly-6.5-x86_64/wheel/openTSNE copying build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE/tsne.py -> build/bdist.dragonfly-6.5-x86_64/wheel/openTSNE copying build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE/utils.py -> build/bdist.dragonfly-6.5-x86_64/wheel/openTSNE copying build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE/version.py -> build/bdist.dragonfly-6.5-x86_64/wheel/openTSNE creating build/bdist.dragonfly-6.5-x86_64/wheel/openTSNE/_matrix_mul copying build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE/_matrix_mul/matrix_mul.cpython-39.so -> build/bdist.dragonfly-6.5-x86_64/wheel/openTSNE/_matrix_mul copying build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE/_matrix_mul/__init__.py -> build/bdist.dragonfly-6.5-x86_64/wheel/openTSNE/_matrix_mul creating build/bdist.dragonfly-6.5-x86_64/wheel/openTSNE/dependencies copying build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE/dependencies/__init__.py -> build/bdist.dragonfly-6.5-x86_64/wheel/openTSNE/dependencies creating build/bdist.dragonfly-6.5-x86_64/wheel/openTSNE/dependencies/annoy copying build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE/dependencies/annoy/__init__.py -> build/bdist.dragonfly-6.5-x86_64/wheel/openTSNE/dependencies/annoy copying build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE/dependencies/annoy/annoylib.cpython-39.so -> build/bdist.dragonfly-6.5-x86_64/wheel/openTSNE/dependencies/annoy copying build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE/quad_tree.cpython-39.so -> build/bdist.dragonfly-6.5-x86_64/wheel/openTSNE copying build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE/_tsne.cpython-39.so -> build/bdist.dragonfly-6.5-x86_64/wheel/openTSNE copying build/lib.dragonfly-6.5-x86_64-cpython-39/openTSNE/kl_divergence.cpython-39.so -> build/bdist.dragonfly-6.5-x86_64/wheel/openTSNE running install_egg_info running egg_info writing openTSNE.egg-info/PKG-INFO writing dependency_links to openTSNE.egg-info/dependency_links.txt writing requirements to openTSNE.egg-info/requires.txt writing top-level names to openTSNE.egg-info/top_level.txt reading manifest file 'openTSNE.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'openTSNE/' adding license file 'LICENSE' writing manifest file 'openTSNE.egg-info/SOURCES.txt' Copying openTSNE.egg-info to build/bdist.dragonfly-6.5-x86_64/wheel/openTSNE-0.7.1-py3.9.egg-info running install_scripts creating build/bdist.dragonfly-6.5-x86_64/wheel/openTSNE-0.7.1.dist-info/WHEEL creating '/construction/math/py-openTSNE/openTSNE-0.7.1/dist/tmpbzx7hv29/openTSNE-0.7.1-cp39-cp39-dragonfly_6_5_x86_64.whl' and adding 'build/bdist.dragonfly-6.5-x86_64/wheel' to it adding 'openTSNE/__init__.py' adding 'openTSNE/_tsne.cpython-39.so' adding 'openTSNE/affinity.py' adding 'openTSNE/callbacks.py' adding 'openTSNE/initialization.py' adding 'openTSNE/kl_divergence.cpython-39.so' adding 'openTSNE/metrics.py' adding 'openTSNE/nearest_neighbors.py' adding 'openTSNE/quad_tree.cpython-39.so' adding 'openTSNE/sklearn.py' adding 'openTSNE/tsne.py' adding 'openTSNE/utils.py' adding 'openTSNE/version.py' adding 'openTSNE/_matrix_mul/__init__.py' adding 'openTSNE/_matrix_mul/matrix_mul.cpython-39.so' adding 'openTSNE/dependencies/__init__.py' adding 'openTSNE/dependencies/annoy/__init__.py' adding 'openTSNE/dependencies/annoy/annoylib.cpython-39.so' adding 'openTSNE-0.7.1.dist-info/LICENSE' adding 'openTSNE-0.7.1.dist-info/METADATA' adding 'openTSNE-0.7.1.dist-info/WHEEL' adding 'openTSNE-0.7.1.dist-info/top_level.txt' adding 'openTSNE-0.7.1.dist-info/RECORD' removing build/bdist.dragonfly-6.5-x86_64/wheel Successfully built openTSNE-0.7.1-cp39-cp39-dragonfly_6_5_x86_64.whl SUCCEEDED 00:02:23 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py39-openTSNE-0.7.1 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> py39-openTSNE-0.7.1 depends on package: py39-scipy>0 - found ===> py39-openTSNE-0.7.1 depends on package: py39-scikit-learn>=0.20 - found ===> py39-openTSNE-0.7.1 depends on file: /usr/local/bin/python3.9 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py39-openTSNE-0.7.1 ===> py39-openTSNE-0.7.1 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> py39-openTSNE-0.7.1 depends on package: py39-scipy>0 - found ===> py39-openTSNE-0.7.1 depends on package: py39-scikit-learn>=0.20 - found ===> py39-openTSNE-0.7.1 depends on file: /usr/local/bin/python3.9 - found ===> Generating temporary packing list ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py39-openTSNE-0.7.1 file sizes/checksums [23]: 0% file sizes/checksums [23]: 100% Service unavailablepacking files [23]: 0% packing files [23]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:01 TOTAL TIME 00:03:07