------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 FLAVOR=py39 UNAME_r=6.5 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/construction/math/py-fsph XDG_CONFIG_HOME=/construction/math/py-fsph XDG_CACHE_HOME=/construction/math/py-fsph/.cache HOME=/construction/math/py-fsph TMPDIR="/tmp" PATH=/construction/math/py-fsph/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/math/py-fsph/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 CMAKE_PREFIX_PATH="/usr/local" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/math/py-fsph XDG_CONFIG_HOME=/construction/math/py-fsph XDG_CACHE_HOME=/construction/math/py-fsph/.cache HOME=/construction/math/py-fsph TMPDIR="/tmp" PATH=/construction/math/py-fsph/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/math/py-fsph/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS=" -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/math/py-fsph/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=6.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/fsph" EXAMPLESDIR="share/examples/fsph" DATADIR="share/fsph" WWWDIR="www/fsph" ETCDIR="etc/fsph" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/fsph DOCSDIR=/usr/local/share/doc/fsph EXAMPLESDIR=/usr/local/share/examples/fsph WWWDIR=/usr/local/www/fsph ETCDIR=/usr/local/etc/fsph SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes DFLY_STING_XFAIL=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_COMPRESSION_FORMAT=.tgz DEVELOPER=1 WITH_CCACHE_BUILD=yes CCACHE_DIR=/ccache UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600503 OSVERSION=9999999 OSREL=6.5 _OSRELEASE=6.5-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=13 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.pkg Installing /packages/All/libffi-3.4.4.pkg Installing /packages/All/expat-2.5.0.pkg Installing /packages/All/mpdecimal-2.5.1.pkg Installing /packages/All/ncurses-6.4.pkg ===== Message from ncurses-6.4: -- To get the terminfo database please install the terminfo-db package: pkg install terminfo-db Installing /packages/All/readline-8.2.1.pkg Installing /packages/All/gettext-runtime-0.21.1.pkg Installing /packages/All/openssl-1.1.1u,1.pkg Installing /packages/All/python39-3.9.17.pkg ===== Message from python39-3.9.17: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 Installing /packages/All/py39-setuptools-63.1.0_1.pkg Installing /packages/All/py39-wheel-0.40.0_1.pkg Installing /packages/All/metis-5.1.0_9.pkg ===== Message from metis-5.1.0_9: -- ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing Installing /packages/All/gmp-6.2.1.pkg Installing /packages/All/mpfr-4.2.0_1,1.pkg Installing /packages/All/mpc-1.3.1_1.pkg UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/liblz4-1.9.4,1.pkg Installing /packages/All/zstd-1.5.5.pkg Installing /packages/All/binutils-2.40_4,1.pkg Installing /packages/All/gcc12-12.2.0_6.pkg ===== Message from gcc12-12.2.0_6: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc12 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.20_1,1.pkg Installing /packages/All/suitesparse-config-7.0.1_1.pkg Installing /packages/All/suitesparse-amd-3.0.3_1.pkg Installing /packages/All/suitesparse-camd-3.0.3_1.pkg Installing /packages/All/suitesparse-colamd-3.0.3_1.pkg Installing /packages/All/suitesparse-ccolamd-3.0.3_1.pkg Installing /packages/All/suitesparse-cholmod-4.0.3_1.pkg Installing /packages/All/suitesparse-umfpack-6.1.0_1.pkg Installing /packages/All/py39-numpy-1.24.1_4,1.pkg Installing /packages/All/py39-packaging-23.1.pkg Installing /packages/All/py39-tomli-2.0.1_2.pkg Installing /packages/All/py39-pyproject_hooks-1.0.0_2.pkg Installing /packages/All/py39-build-0.10.0_2.pkg Installing /packages/All/py39-installer-0.7.0.pkg Installing /packages/All/ccache-3.7.12_4.pkg Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc create symlink for gcc (world) create symlink for g++ create symlink for g++ (world) create symlink for gcc12 create symlink for gcc12 (world) create symlink for g++12 create symlink for g++12 (world) create symlink for cpp12 create symlink for cpp12 (world) ===== Message from ccache-3.7.12_4: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:10 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py39-fsph-0.3.0 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py39-fsph-0.3.0 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-fsph-0.3.0 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py39-fsph-0.3.0 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-fsph-0.3.0 for building => SHA256 Checksum OK for glotzerlab-fsph-v0.3.0_GH0.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py39-fsph-0.3.0 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-fsph-0.3.0 for building ===> Extracting for py39-fsph-0.3.0 => SHA256 Checksum OK for glotzerlab-fsph-v0.3.0_GH0.tar.gz. Extracted Memory Use: 1.14M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py39-fsph-0.3.0 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py39-fsph-0.3.0 depends on package: py39-setuptools>0 - found ===> py39-fsph-0.3.0 depends on package: py39-wheel>0 - found ===> py39-fsph-0.3.0 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> py39-fsph-0.3.0 depends on file: /usr/local/bin/python3.9 - found ===> py39-fsph-0.3.0 depends on package: py39-build>=0 - found ===> py39-fsph-0.3.0 depends on package: py39-installer>=0 - found ===> py39-fsph-0.3.0 depends on file: /usr/local/bin/ccache - found SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py39-fsph-0.3.0 depends on package: py39-setuptools>0 - found ===> py39-fsph-0.3.0 depends on package: py39-wheel>0 - found ===> py39-fsph-0.3.0 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> py39-fsph-0.3.0 depends on file: /usr/local/bin/python3.9 - found ===> py39-fsph-0.3.0 depends on package: py39-build>=0 - found ===> py39-fsph-0.3.0 depends on package: py39-installer>=0 - found ===> py39-fsph-0.3.0 depends on file: /usr/local/bin/ccache - found ===> Configuring for py39-fsph-0.3.0 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py39-fsph-0.3.0 * Getting build dependencies for wheel... running egg_info creating fsph.egg-info writing fsph.egg-info/PKG-INFO writing dependency_links to fsph.egg-info/dependency_links.txt writing requirements to fsph.egg-info/requires.txt writing top-level names to fsph.egg-info/top_level.txt writing manifest file 'fsph.egg-info/SOURCES.txt' reading manifest file 'fsph.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.cuh' under directory 'src' adding license file 'LICENSE' writing manifest file 'fsph.egg-info/SOURCES.txt' * Building wheel... running bdist_wheel running build running build_py creating build creating build/lib.dragonfly-6.5-x86_64-cpython-39 creating build/lib.dragonfly-6.5-x86_64-cpython-39/fsph copying fsph/__init__.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/fsph copying fsph/tf_ops.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/fsph copying fsph/version.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/fsph running build_ext NVCC: None building 'fsph._fsph' extension creating build/temp.dragonfly-6.5-x86_64-cpython-39 creating build/temp.dragonfly-6.5-x86_64-cpython-39/fsph cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c fsph/_fsph.cpp -o build/temp.dragonfly-6.5-x86_64-cpython-39/fsph/_fsph.o -std=c++14 -std=c++14 In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940, from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5, from fsph/_fsph.cpp:779: /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from fsph/_fsph.cpp:788: fsph/../src/spherical_harmonics.hpp: In instantiation of 'std::complex<_Tp> fsph::PointSPHEvaluator::iterator::grad_phi() const [with Real = float]': fsph/../src/spherical_harmonics.hpp:329:37: required from 'void fsph::evaluate_SPH_with_grads(std::complex<_Tp>*, std::complex<_Tp>*, unsigned int, const Real*, const Real*, unsigned int, bool) [with Real = float]' fsph/_fsph.cpp:4616:412: required from here fsph/../src/spherical_harmonics.hpp:120:29: error: 'isfinite' was not declared in this scope if(!isfinite(result.real())) ~~~~~~~~^~~~~~~~~~~~~~~ fsph/../src/spherical_harmonics.hpp:120:29: note: suggested alternative: In file included from /usr/include/c++/8.0/complex:44, from fsph/../src/spherical_harmonics.hpp:2, from fsph/_fsph.cpp:788: /usr/include/c++/8.0/cmath:578:5: note: 'std::isfinite' isfinite(_Tp __x) ^~~~~~~~ In file included from fsph/_fsph.cpp:788: fsph/../src/spherical_harmonics.hpp: In instantiation of 'std::complex<_Tp> fsph::PointSPHEvaluator::iterator::grad_phi() const [with Real = double]': fsph/../src/spherical_harmonics.hpp:329:37: required from 'void fsph::evaluate_SPH_with_grads(std::complex<_Tp>*, std::complex<_Tp>*, unsigned int, const Real*, const Real*, unsigned int, bool) [with Real = double]' fsph/_fsph.cpp:4862:416: required from here fsph/../src/spherical_harmonics.hpp:120:29: error: 'isfinite' was not declared in this scope if(!isfinite(result.real())) ~~~~~~~~^~~~~~~~~~~~~~~ fsph/../src/spherical_harmonics.hpp:120:29: note: suggested alternative: In file included from /usr/include/c++/8.0/complex:44, from fsph/../src/spherical_harmonics.hpp:2, from fsph/_fsph.cpp:788: /usr/include/c++/8.0/cmath:578:5: note: 'std::isfinite' isfinite(_Tp __x) ^~~~~~~~ error: command '/usr/local/libexec/ccache/cc' failed with exit code 1 ERROR Backend subprocess exited when trying to invoke build_wheel *** Error code 1 Stop. make: stopped in /xports/math/py-fsph FAILED 00:00:07