------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 UNAME_r=6.5 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- F77="gfortran12" F90="gfortran12" FC="gfortran12" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12" PKG_CONFIG=pkgconf XDG_DATA_HOME=/construction/math/R-cran-sf XDG_CONFIG_HOME=/construction/math/R-cran-sf XDG_CACHE_HOME=/construction/math/R-cran-sf/.cache HOME=/construction/math/R-cran-sf TMPDIR="/tmp" PATH=/construction/math/R-cran-sf/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/math/R-cran-sf/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- "--with-proj-api=yes" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- F77="gfortran12" F90="gfortran12" FC="gfortran12" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12" XDG_DATA_HOME=/construction/math/R-cran-sf XDG_CONFIG_HOME=/construction/math/R-cran-sf XDG_CACHE_HOME=/construction/math/R-cran-sf/.cache HOME=/construction/math/R-cran-sf TMPDIR="/tmp" PATH=/construction/math/R-cran-sf/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/math/R-cran-sf/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc12 -L/usr/local/lib/gcc12 -B/usr/local/bin " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/math/R-cran-sf/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- R_MOD_DIR=lib/R/library/sf OSREL=6.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/sf" EXAMPLESDIR="share/examples/sf" DATADIR="share/sf" WWWDIR="www/sf" ETCDIR="etc/sf" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/sf DOCSDIR=/usr/local/share/doc/sf EXAMPLESDIR=/usr/local/share/examples/sf WWWDIR=/usr/local/www/sf ETCDIR=/usr/local/etc/sf SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes DFLY_STING_XFAIL=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_COMPRESSION_FORMAT=.tgz DEVELOPER=1 WITH_CCACHE_BUILD=yes CCACHE_DIR=/ccache UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600503 OSVERSION=9999999 OSREL=6.5 _OSRELEASE=6.5-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=13 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/libnghttp2-1.52.0.pkg Installing /packages/All/openssl-1.1.1u,1.pkg Installing /packages/All/libssh2-1.10.0_1,3.pkg Installing /packages/All/indexinfo-0.3.1.pkg Installing /packages/All/libunistring-1.1.pkg Installing /packages/All/libidn2-2.3.4.pkg Installing /packages/All/libpsl-0.21.2_2.pkg Installing /packages/All/ca_root_nss-3.89.pkg ===== Message from ca_root_nss-3.89: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem Installing /packages/All/curl-8.1.1.pkg Installing /packages/All/pcre2-10.42.pkg Installing /packages/All/brotli-1.0.9,1.pkg Installing /packages/All/png-1.6.39.pkg Installing /packages/All/freetype2-2.12.1_2.pkg ===== Message from freetype2-2.12.1_2: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). Installing /packages/All/graphite2-1.3.14.pkg Installing /packages/All/libffi-3.4.4.pkg Installing /packages/All/gettext-runtime-0.21.1.pkg Installing /packages/All/ncurses-6.3.pkg ===== Message from ncurses-6.3: -- To get the terminfo database please install the terminfo-db package: pkg install terminfo-db Installing /packages/All/readline-8.2.1.pkg Installing /packages/All/libxml2-2.10.4.pkg Installing /packages/All/libiconv-1.17.pkg Installing /packages/All/expat-2.5.0.pkg Installing /packages/All/mpdecimal-2.5.1.pkg Installing /packages/All/python39-3.9.17.pkg ===== Message from python39-3.9.17: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 Installing /packages/All/glib-2.76.2,2.pkg Generating GIO modules cache Compiling glib schemas No schema files found: doing nothing. Installing /packages/All/harfbuzz-7.1.0.pkg Installing /packages/All/icu-72.1,1.pkg Installing /packages/All/libdeflate-1.18.pkg Installing /packages/All/jbigkit-2.1_1.pkg Installing /packages/All/liblz4-1.9.4,1.pkg Installing /packages/All/zstd-1.5.4.pkg Installing /packages/All/jpeg-turbo-2.1.5.1.pkg Installing /packages/All/tiff-4.4.0_1.pkg Installing /packages/All/fontconfig-2.14.2,1.pkg Running fc-cache to build fontconfig cache... Installing /packages/All/libXau-1.0.9.pkg Installing /packages/All/xorgproto-2022.1.pkg Installing /packages/All/libXdmcp-1.1.3.pkg Installing /packages/All/libxcb-1.15_1.pkg Installing /packages/All/libX11-1.8.6,1.pkg Installing /packages/All/libXext-1.3.4,1.pkg Installing /packages/All/libglvnd-1.6.0.pkg Installing /packages/All/pixman-0.42.2.pkg Installing /packages/All/libXrender-0.9.10_2.pkg Installing /packages/All/cairo-1.17.4_2,3.pkg Installing /packages/All/fribidi-1.0.12.pkg Installing /packages/All/libdatrie-0.2.13_1.pkg Installing /packages/All/libthai-0.1.29.pkg ===== Message from libthai-0.1.29: -- ===> NOTICE: The libthai port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing Installing /packages/All/libfontenc-1.1.4.pkg Installing /packages/All/mkfontscale-1.2.1.pkg Installing /packages/All/font-bh-ttf-1.0.3_4.pkg Running fc-cache to build fontconfig cache... Installing /packages/All/font-misc-meltho-1.0.3_4.pkg Installing /packages/All/font-misc-ethiopic-1.0.4.pkg Installing /packages/All/encodings-1.0.5,1.pkg Installing /packages/All/dejavu-2.37_1.pkg Running fc-cache to build fontconfig cache... ===== Message from dejavu-2.37_1: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Installing /packages/All/xorg-fonts-truetype-7.7_1.pkg Installing /packages/All/libXft-2.3.7.pkg Installing /packages/All/pango-1.50.9_1.pkg Installing /packages/All/tcl86-8.6.13.pkg Installing /packages/All/libXScrnSaver-1.2.4.pkg Installing /packages/All/tk86-8.6.13.pkg Installing /packages/All/libuv-1.44.2.pkg Installing /packages/All/rhash-1.4.3.pkg Installing /packages/All/pkg-1.19.1_1.pkg Installing /packages/All/libarchive-3.6.2,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/cmake-core-3.25.1_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/gmake-4.3_2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/gmp-6.2.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/mpfr-4.2.0,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/mpc-1.2.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/binutils-2.40_4,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/gcc12-12.2.0_5.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from gcc12-12.2.0_5: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc12 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/libidn-1.38.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/jbig2dec-0.19.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/lcms2-2.13.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/openjpeg-2.5.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libpaper-1.1.28.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libdaemon-0.14_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libICE-1.1.0_1,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libSM-1.2.3,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/dbus-1.14.6,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===> Creating groups. Creating group 'messagebus' with gid '556'. ===> Creating users Creating user 'messagebus' with uid '556'. Installing /packages/All/dbus-glib-0.112.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/gdbm-1.23.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libevent-2.1.12.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/gnome_subr-1.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/avahi-app-0.8_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===> Creating groups. Creating group 'avahi' with gid '558'. ===> Creating users Creating user 'avahi' with uid '558'. Installing /packages/All/nettle-3.8.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libtasn1-4.19.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/p11-kit-0.24.1_2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/gnutls-3.7.9.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/cups-2.4.2_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===> Creating groups. Creating group 'cups' with gid '193'. ===> Creating users Creating user 'cups' with uid '193'. Installing /packages/All/poppler-data-0.4.12.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/ghostscript9-agpl-base-9.56.1_10.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from ghostscript9-agpl-base-9.56.1_10: -- This package installs a script named dvipdf that depends on dvips. If you want to use this script you need to install print/tex-dvipsk. Installing /packages/All/libXt-1.2.1,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libXmu-1.1.3,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/R-4.2.3.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/R-cran-proxy-0.4.27.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/R-cran-e1071-1.7.11.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/R-cran-classInt-0.4.7.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/R-cran-DBI-1.1.3.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/R-cran-magrittr-2.0.3.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/R-cran-Rcpp-1.0.10.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/R-cran-wk-0.6.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/R-cran-s2-1.1.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/udunits-2.2.28.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/R-cran-units-0.8.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/pkgconf-1.8.1,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required UNFLAVORED databases/sqlite3 -> use databases/sqlite3@default Installing /packages/All/libedit-3.1.20221030,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/sqlite3-3.41.2,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/proj-9.2.0,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libgeotiff-1.7.1_3.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/giflib-5.2.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/json-c-0.16.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/qhull-8.0.2_1,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/shapelib-1.5.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/freexl-1.0.6.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/geos-3.11.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libaec-1.0.6.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/hdf5-1.12.2_1,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/boost-libs-1.81.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from boost-libs-1.81.0: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. Installing /packages/All/uriparser-0.9.6.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/minizip-1.2.11.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libkml-1.3.0_25.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/netcdf-4.9.0_2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/nspr-4.35.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required UNFLAVORED databases/sqlite3 -> use databases/sqlite3@default Installing /packages/All/nss-3.89.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/gcc9-9.5.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from gcc9-9.5.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc9 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Unsupported by upstream. Use GCC 10 or newer instead.. It is scheduled to be removed on or after 2024-06-30. Installing /packages/All/poppler-23.03.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/sfcgal-1.4.1_3.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/librttopo-1.1.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required UNFLAVORED databases/sqlite3 -> use databases/sqlite3@default Installing /packages/All/spatialite-5.0.1_5.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/webp-1.3.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/xerces-c3-3.2.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/postgresql13-client-13.10.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from postgresql13-client-13.10: -- The PostgreSQL port has a collection of "side orders": postgresql-docs For all of the html documentation p5-Pg A perl5 API for client access to PostgreSQL databases. postgresql-tcltk If you want tcl/tk client support. postgresql-jdbc For Java JDBC support. postgresql-odbc For client access from unix applications using ODBC as access method. Not needed to access unix PostgreSQL servers from Win32 using ODBC. See below. ruby-postgres, py-psycopg2 For client access to PostgreSQL databases using the ruby & python languages. postgresql-plperl, postgresql-pltcl & postgresql-plruby For using perl5, tcl & ruby as procedural languages. postgresql-contrib Lots of contributed utilities, postgresql functions and datatypes. There you find pg_standby, pgcrypto and many other cool things. etc... UNFLAVORED databases/sqlite3 -> use databases/sqlite3@default Installing /packages/All/gdal-3.6.2_3.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required UNFLAVORED devel/binutils -> use devel/binutils@native UNFLAVORED databases/sqlite3 -> use databases/sqlite3@default UNFLAVORED databases/sqlite3 -> use databases/sqlite3@default UNFLAVORED databases/sqlite3 -> use databases/sqlite3@default UNFLAVORED databases/sqlite3 -> use databases/sqlite3@default SUCCEEDED 00:00:34 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> R-cran-sf-1.0.8_4 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> R-cran-sf-1.0.8_4 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by R-cran-sf-1.0.8_4 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> R-cran-sf-1.0.8_4 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by R-cran-sf-1.0.8_4 for building => SHA256 Checksum OK for sf_1.0-8.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> R-cran-sf-1.0.8_4 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by R-cran-sf-1.0.8_4 for building ===> Extracting for R-cran-sf-1.0.8_4 => SHA256 Checksum OK for sf_1.0-8.tar.gz. Extracted Memory Use: 8.17M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for R-cran-sf-1.0.8_4 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> R-cran-sf-1.0.8_4 depends on package: R-cran-classInt>=0.4.1 - found ===> R-cran-sf-1.0.8_4 depends on package: R-cran-DBI>=0.8 - found ===> R-cran-sf-1.0.8_4 depends on package: R-cran-magrittr>0 - found ===> R-cran-sf-1.0.8_4 depends on package: R-cran-Rcpp>=0.12.18 - found ===> R-cran-sf-1.0.8_4 depends on package: R-cran-s2>=1.0.7 - found ===> R-cran-sf-1.0.8_4 depends on package: R-cran-units>=0.7.0 - found ===> R-cran-sf-1.0.8_4 depends on file: /usr/local/bin/R - found ===> R-cran-sf-1.0.8_4 depends on executable: gfortran12 - found ===> R-cran-sf-1.0.8_4 depends on package: pkgconf>=1.3.0_1 - found ===> R-cran-sf-1.0.8_4 depends on file: /usr/local/bin/as - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> R-cran-sf-1.0.8_4 depends on shared library: libgdal.so - found (/usr/local/lib/libgdal.so) ===> R-cran-sf-1.0.8_4 depends on shared library: libgeos.so - found (/usr/local/lib/libgeos.so) ===> R-cran-sf-1.0.8_4 depends on shared library: libproj.so - found (/usr/local/lib/libproj.so) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> R-cran-sf-1.0.8_4 depends on package: R-cran-classInt>=0.4.1 - found ===> R-cran-sf-1.0.8_4 depends on package: R-cran-DBI>=0.8 - found ===> R-cran-sf-1.0.8_4 depends on package: R-cran-magrittr>0 - found ===> R-cran-sf-1.0.8_4 depends on package: R-cran-Rcpp>=0.12.18 - found ===> R-cran-sf-1.0.8_4 depends on package: R-cran-s2>=1.0.7 - found ===> R-cran-sf-1.0.8_4 depends on package: R-cran-units>=0.7.0 - found ===> R-cran-sf-1.0.8_4 depends on file: /usr/local/bin/R - found ===> R-cran-sf-1.0.8_4 depends on executable: gfortran12 - found ===> R-cran-sf-1.0.8_4 depends on package: pkgconf>=1.3.0_1 - found ===> R-cran-sf-1.0.8_4 depends on file: /usr/local/bin/as - found ===> R-cran-sf-1.0.8_4 depends on shared library: libgdal.so - found (/usr/local/lib/libgdal.so) ===> R-cran-sf-1.0.8_4 depends on shared library: libgeos.so - found (/usr/local/lib/libgeos.so) ===> R-cran-sf-1.0.8_4 depends on shared library: libproj.so - found (/usr/local/lib/libproj.so) ===> Configuring for R-cran-sf-1.0.8_4 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> R-cran-sf-1.0.8_4 depends on package: R-cran-classInt>=0.4.1 - found ===> R-cran-sf-1.0.8_4 depends on package: R-cran-DBI>=0.8 - found ===> R-cran-sf-1.0.8_4 depends on package: R-cran-magrittr>0 - found ===> R-cran-sf-1.0.8_4 depends on package: R-cran-Rcpp>=0.12.18 - found ===> R-cran-sf-1.0.8_4 depends on package: R-cran-s2>=1.0.7 - found ===> R-cran-sf-1.0.8_4 depends on package: R-cran-units>=0.7.0 - found ===> R-cran-sf-1.0.8_4 depends on file: /usr/local/bin/R - found ===> R-cran-sf-1.0.8_4 depends on executable: gfortran12 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for R-cran-sf-1.0.8_4 ===> R-cran-sf-1.0.8_4 depends on package: R-cran-classInt>=0.4.1 - found ===> R-cran-sf-1.0.8_4 depends on package: R-cran-DBI>=0.8 - found ===> R-cran-sf-1.0.8_4 depends on package: R-cran-magrittr>0 - found ===> R-cran-sf-1.0.8_4 depends on package: R-cran-Rcpp>=0.12.18 - found ===> R-cran-sf-1.0.8_4 depends on package: R-cran-s2>=1.0.7 - found ===> R-cran-sf-1.0.8_4 depends on package: R-cran-units>=0.7.0 - found ===> R-cran-sf-1.0.8_4 depends on file: /usr/local/bin/R - found ===> R-cran-sf-1.0.8_4 depends on executable: gfortran12 - found ===> Generating temporary packing list * installing *source* package 'sf' ... ** package 'sf' successfully unpacked and MD5 sums checked ** using staged installation configure: CC: cc configure: CXX: c++ checking for gdal-config... /usr/local/bin/gdal-config checking gdal-config usability... yes configure: GDAL: 3.6.2 checking GDAL version >= 2.0.1... yes checking for gcc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking how to run the C preprocessor... cpp checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking gdal.h usability... yes checking gdal.h presence... yes checking for gdal.h... yes checking GDAL: linking with --libs only... yes checking GDAL: /usr/local/share/gdal/pcs.csv readable... no checking GDAL: checking whether PROJ is available for linking:... yes checking GDAL: checking whether PROJ is available fur running:... yes configure: GDAL: 3.6.2 configure: pkg-config proj exists, will use it configure: using proj.h. configure: PROJ: 9.2.0 checking PROJ: checking whether PROJ and sqlite3 are available for linking:... yes checking for geos-config... /usr/local/bin/geos-config checking geos-config usability... yes configure: GEOS: 3.11.1 checking GEOS version >= 3.4.0... yes checking geos_c.h usability... yes checking geos_c.h presence... yes checking for geos_c.h... yes checking geos: linking with -L/usr/local/lib -lgeos_c... yes configure: Package CPP flags: -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include configure: Package LIBS: -L/usr/local/lib -lproj -L/usr/local/lib -lgdal -L/usr/local/lib -lgeos_c configure: creating ./config.status config.status: creating src/Makevars ** libs gmake[1]: Entering directory '/construction/math/R-cran-sf/sf/src' c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c RcppExports.cpp -o RcppExports.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c bbox.cpp -o bbox.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c gdal.cpp -o gdal.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c gdal_geom.cpp -o gdal_geom.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c gdal_read.cpp -o gdal_read.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c gdal_utils.cpp -o gdal_utils.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c gdal_write.cpp -o gdal_write.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c geos.cpp -o geos.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c hex.cpp -o hex.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c mdim.cpp -o mdim.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c ops.cpp -o ops.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c polygonize.cpp -o polygonize.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c proj.cpp -o proj.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c proj_info.cpp -o proj_info.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c raster2sf.cpp -o raster2sf.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c sfc-sfg.cpp -o sfc-sfg.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c signed_area.cpp -o signed_area.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c stars.cpp -o stars.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c wkb.cpp -o wkb.o c++ -std=gnu++11 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c zm_range.cpp -o zm_range.o c++ -std=gnu++11 -shared -L/usr/local/lib/R/lib -Wl,-rpath=/usr/local/lib/gcc12 -L/usr/local/lib/gcc12 -B/usr/local/bin -L/usr/local/lib -o sf.so RcppExports.o bbox.o gdal.o gdal_geom.o gdal_read.o gdal_utils.o gdal_write.o geos.o hex.o mdim.o ops.o polygonize.o proj.o proj_info.o raster2sf.o sfc-sfg.o signed_area.o stars.o wkb.o zm_range.o -L/usr/local/lib -lproj -L/usr/local/lib -lgdal -L/usr/local/lib -lgeos_c -L/usr/local/lib/R/lib -lR gmake[1]: Leaving directory '/construction/math/R-cran-sf/sf/src' installing to /construction/math/R-cran-sf/stage/usr/local/lib/R/library/00LOCK-sf/00new/sf/libs ** R ** demo ** inst ** tests ** byte-compile and prepare package for lazy loading in method for 'dbWriteTable' with signature '"PostgreSQLConnection","character","sf"': no definition for class "PostgreSQLConnection" in method for 'dbDataType' with signature '"PostgreSQLConnection","sf"': no definition for class "PostgreSQLConnection" in method for 'coerce' with signature '"Spatial","sf"': no definition for class "Spatial" in method for 'coerce' with signature '"Spatial","sfc"': no definition for class "Spatial" in method for 'coerce' with signature '"sf","Spatial"': no definition for class "Spatial" in method for 'coerce' with signature '"sfc","Spatial"': no definition for class "Spatial" in method for 'coerce' with signature '"XY","Spatial"': no definition for class "Spatial" in method for 'coerce' with signature '"crs","CRS"': no definition for class "CRS" in method for 'coerce' with signature '"sgbp","sparseMatrix"': no definition for class "sparseMatrix" ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sf) /usr/bin/find /construction/math/R-cran-sf/stage/usr/local/lib/R/library/sf -name '*.so' -exec /usr/bin/strip {} + ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libsqlite3.so.0 from databases/sqlite3 but it is not declared as a dependency Warning: you need USES+=sqlite Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libtiff.so.5 from graphics/tiff but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libtiff.so:graphics/tiff Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libcurl.so.4 from ftp/curl but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libcurl.so:ftp/curl Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libxml2.so.2 from textproc/libxml2 but it is not declared as a dependency Warning: you need USE_GNOME+=libxml2 Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libcrypto.so.11 from security/openssl but it is not declared as a dependency Warning: you need USES=ssl Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libssl.so.11 from security/openssl but it is not declared as a dependency Warning: you need USES=ssl Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libzstd.so.1 from archivers/zstd but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libzstd.so:archivers/zstd Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/liblz4.so.1 from archivers/liblz4 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=liblz4.so:archivers/liblz4 Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libqhull_r.so.8.0 from math/qhull but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libqhull_r.so:math/qhull Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libSFCGAL.so.1 from databases/sfcgal but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libSFCGAL.so:databases/sfcgal Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libxerces-c-3.2.so from textproc/xerces-c3 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libxerces-c-3.2.so:textproc/xerces-c3 Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libjpeg.so.8 from graphics/jpeg-turbo but it is not declared as a dependency Warning: you need USES+=jpeg Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libgeotiff.so.5 from graphics/libgeotiff but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libgeotiff.so:graphics/libgeotiff Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libshp.so.2 from devel/shapelib but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libshp.so:devel/shapelib Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libexpat.so.1 from textproc/expat2 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libexpat.so:textproc/expat2 Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libjson-c.so.5 from devel/json-c but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libjson-c.so:devel/json-c Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libreadline.so.8 from devel/readline but it is not declared as a dependency Warning: you need USES+=readline Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libpcre2-8.so.0 from devel/pcre2 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libpcre2-8.so:devel/pcre2 Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libicuuc.so.72 from devel/icu but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libicuuc.so:devel/icu Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libicui18n.so.72 from devel/icu but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libicui18n.so:devel/icu Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libjbig.so.2 from graphics/jbigkit but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libjbig.so:graphics/jbigkit Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libdeflate.so.0 from archivers/libdeflate but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libdeflate.so:archivers/libdeflate Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libnghttp2.so.14 from www/libnghttp2 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libnghttp2.so:www/libnghttp2 Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libssh2.so.1 from security/libssh2 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libssh2.so:security/libssh2 Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libpsl.so.5 from dns/libpsl but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libpsl.so:dns/libpsl Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libgmpxx.so.4 from math/gmp but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libgmpxx.so:math/gmp Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libboost_thread.so.1.81.0 from devel/boost-libs but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libboost_thread.so:devel/boost-libs Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libboost_system.so.1.81.0 from devel/boost-libs but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libboost_system.so:devel/boost-libs Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libboost_serialization.so.1.81.0 from devel/boost-libs but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libboost_serialization.so:devel/boost-libs Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libboost_chrono.so.1.81.0 from devel/boost-libs but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libboost_chrono.so:devel/boost-libs Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libboost_atomic.so.1.81.0 from devel/boost-libs but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libboost_atomic.so:devel/boost-libs Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libmpfr.so.6 from math/mpfr but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libmpfr.so:math/mpfr Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libgmp.so.10 from math/gmp but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libgmp.so:math/gmp Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libncurses.so.6 from devel/ncurses but it is not declared as a dependency Warning: you need USES+=ncurses Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libtinfo.so.6 from devel/ncurses but it is not declared as a dependency Warning: you need USES+=ncurses Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libicudata.so.72 from devel/icu but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libicudata.so:devel/icu Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libidn2.so.0 from dns/libidn2 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libidn2.so:dns/libidn2 Error: /usr/local/lib/R/library/sf/libs/sf.so is linked to /usr/local/lib/libunistring.so.5 from devel/libunistring but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libunistring.so:devel/libunistring Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:03:38 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for R-cran-sf-1.0.8_4 file sizes/checksums [184]: 0% file sizes/checksums [184]: 54% file sizes/checksums [184]: 100% Service unavailablepacking files [184]: 0% packing files [184]: 54% packing files [184]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:02 TOTAL TIME 00:04:16