------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 UNAME_r=6.1 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- MAKE=gmake XDG_DATA_HOME=/construction/biology/scrm XDG_CONFIG_HOME=/construction/biology/scrm HOME=/construction/biology/scrm TMPDIR="/tmp" PATH=/construction/biology/scrm/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 CONFIG_SITE=/xports/Templates/config.site lt_cv_sys_max_cmd_len=262144 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/biology/scrm XDG_CONFIG_HOME=/construction/biology/scrm HOME=/construction/biology/scrm TMPDIR="/tmp" PATH=/construction/biology/scrm/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/biology/scrm/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- OSREL=6.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/scrm" EXAMPLESDIR="share/examples/scrm" DATADIR="share/scrm" WWWDIR="www/scrm" ETCDIR="etc/scrm" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/scrm DOCSDIR=/usr/local/share/doc/scrm EXAMPLESDIR=/usr/local/share/examples/scrm WWWDIR=/usr/local/www/scrm ETCDIR=/usr/local/etc/scrm SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_SUFX=.txz DEVELOPER=1 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600102 OSVERSION=9999999 OSREL=6.1 _OSRELEASE=6.1-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=10 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gettext-runtime-0.21.txz Installing /packages/All/gmake-4.3_2.txz Installing /packages/All/m4-1.4.18_1,1.txz Installing /packages/All/autoconf-wrapper-20131203.txz Installing /packages/All/perl5-5.32.1_1.txz Installing /packages/All/autoconf-2.69_3.txz Installing /packages/All/automake-1.16.3.txz SUCCEEDED 00:00:10 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> scrm-1.7.4 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> scrm-1.7.4 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by scrm-1.7.4 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> scrm-1.7.4 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by scrm-1.7.4 for building => SHA256 Checksum OK for scrm-scrm-v1.7.4_GH0.tar.gz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> scrm-1.7.4 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by scrm-1.7.4 for building ===> Extracting for scrm-1.7.4 => SHA256 Checksum OK for scrm-scrm-v1.7.4_GH0.tar.gz. Extracted Memory Use: 1.77M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for scrm-1.7.4 ===> Applying ports patches for scrm-1.7.4 from /xports/biology/scrm/files ===> Applying dragonfly patches for scrm-1.7.4 from /xports/biology/scrm/dragonfly SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> scrm-1.7.4 depends on package: gmake>=4.3 - found ===> scrm-1.7.4 depends on package: autoconf>=2.69 - found ===> scrm-1.7.4 depends on package: automake>=1.16.1 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> scrm-1.7.4 depends on package: gmake>=4.3 - found ===> scrm-1.7.4 depends on package: autoconf>=2.69 - found ===> scrm-1.7.4 depends on package: automake>=1.16.1 - found ===> Configuring for scrm-1.7.4 configure.ac:25: installing './compile' configure.ac:16: installing './config.guess' configure.ac:16: installing './config.sub' configure.ac:2: installing './install-sh' configure.ac:2: installing './missing' Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' configure: loading site script /xports/Templates/config.site checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether gmake sets $(MAKE)... yes checking whether gmake supports nested variables... yes checking whether gmake supports nested variables... (cached) yes checking build system type... x86_64-portbld-dragonfly6.1 checking host system type... x86_64-portbld-dragonfly6.1 checking for ranlib... ranlib checking whether gmake supports the include directive... yes (GNU style) checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking dependency style of c++... gcc3 checking whether c++ supports C++11 features by default... yes checking for gcc... cc checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking whether cc understands -c and -o together... yes checking dependency style of cc... gcc3 checking for TestCase in -lcppunit... no checking how to run the C preprocessor... cpp checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for ANSI C header files... (cached) yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for size_t... (cached) yes checking CXXFLAGS for maximum warnings... -Wall checking whether C++ compiler accepts -Wextra... yes checking whether C++ compiler accepts -Wnon-virtual-dtor... yes checking whether C++ compiler accepts -Wcast-align... yes checking whether C++ compiler accepts -Wunused... yes checking whether C++ compiler accepts -Woverloaded-virtual... yes checking whether C++ compiler accepts -pedantic... yes checking whether C++ compiler accepts -Wcatch-value... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands SUCCEEDED 00:00:13 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for scrm-1.7.4 gmake[1]: Entering directory '/construction/biology/scrm/scrm-1.7.4' c++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -DNDEBUG -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -pipe -O2 -fno-strict-aliasing -Wall -MT src/scrm-param.o -MD -MP -MF src/.deps/scrm-param.Tpo -c -o src/scrm-param.o `test -f 'src/param.cc' || echo './'`src/param.cc c++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -DNDEBUG -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -pipe -O2 -fno-strict-aliasing -Wall -MT src/scrm-forest.o -MD -MP -MF src/.deps/scrm-forest.Tpo -c -o src/scrm-forest.o `test -f 'src/forest.cc' || echo './'`src/forest.cc c++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -DNDEBUG -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -pipe -O2 -fno-strict-aliasing -Wall -MT src/scrm-node.o -MD -MP -MF src/.deps/scrm-node.Tpo -c -o src/scrm-node.o `test -f 'src/node.cc' || echo './'`src/node.cc c++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -DNDEBUG -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -pipe -O2 -fno-strict-aliasing -Wall -MT src/scrm-node_container.o -MD -MP -MF src/.deps/scrm-node_container.Tpo -c -o src/scrm-node_container.o `test -f 'src/node_container.cc' || echo './'`src/node_container.cc c++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -DNDEBUG -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -pipe -O2 -fno-strict-aliasing -Wall -MT src/scrm-time_interval.o -MD -MP -MF src/.deps/scrm-time_interval.Tpo -c -o src/scrm-time_interval.o `test -f 'src/time_interval.cc' || echo './'`src/time_interval.cc c++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -DNDEBUG -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -pipe -O2 -fno-strict-aliasing -Wall -MT src/scrm-model.o -MD -MP -MF src/.deps/scrm-model.Tpo -c -o src/scrm-model.o `test -f 'src/model.cc' || echo './'`src/model.cc c++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -DNDEBUG -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -pipe -O2 -fno-strict-aliasing -Wall -MT src/scrm-tree_point.o -MD -MP -MF src/.deps/scrm-tree_point.Tpo -c -o src/scrm-tree_point.o `test -f 'src/tree_point.cc' || echo './'`src/tree_point.cc c++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -DNDEBUG -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -pipe -O2 -fno-strict-aliasing -Wall -MT src/scrm-scrm.o -MD -MP -MF src/.deps/scrm-scrm.Tpo -c -o src/scrm-scrm.o `test -f 'src/scrm.cc' || echo './'`src/scrm.cc c++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -DNDEBUG -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -pipe -O2 -fno-strict-aliasing -Wall -MT src/random/scrm-random_generator.o -MD -MP -MF src/random/.deps/scrm-random_generator.Tpo -c -o src/random/scrm-random_generator.o `test -f 'src/random/random_generator.cc' || echo './'`src/random/random_generator.cc c++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -DNDEBUG -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -pipe -O2 -fno-strict-aliasing -Wall -MT src/random/scrm-mersenne_twister.o -MD -MP -MF src/random/.deps/scrm-mersenne_twister.Tpo -c -o src/random/scrm-mersenne_twister.o `test -f 'src/random/mersenne_twister.cc' || echo './'`src/random/mersenne_twister.cc mv -f src/.deps/scrm-tree_point.Tpo src/.deps/scrm-tree_point.Po c++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -DNDEBUG -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -pipe -O2 -fno-strict-aliasing -Wall -MT src/random/scrm-fastfunc.o -MD -MP -MF src/random/.deps/scrm-fastfunc.Tpo -c -o src/random/scrm-fastfunc.o `test -f 'src/random/fastfunc.cc' || echo './'`src/random/fastfunc.cc mv -f src/.deps/scrm-node.Tpo src/.deps/scrm-node.Po c++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -DNDEBUG -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -pipe -O2 -fno-strict-aliasing -Wall -MT src/summary_statistics/scrm-tmrca.o -MD -MP -MF src/summary_statistics/.deps/scrm-tmrca.Tpo -c -o src/summary_statistics/scrm-tmrca.o `test -f 'src/summary_statistics/tmrca.cc' || echo './'`src/summary_statistics/tmrca.cc mv -f src/random/.deps/scrm-random_generator.Tpo src/random/.deps/scrm-random_generator.Po c++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -DNDEBUG -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -pipe -O2 -fno-strict-aliasing -Wall -MT src/summary_statistics/scrm-seg_sites.o -MD -MP -MF src/summary_statistics/.deps/scrm-seg_sites.Tpo -c -o src/summary_statistics/scrm-seg_sites.o `test -f 'src/summary_statistics/seg_sites.cc' || echo './'`src/summary_statistics/seg_sites.cc mv -f src/random/.deps/scrm-fastfunc.Tpo src/random/.deps/scrm-fastfunc.Po c++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -DNDEBUG -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -pipe -O2 -fno-strict-aliasing -Wall -MT src/summary_statistics/scrm-frequency_spectrum.o -MD -MP -MF src/summary_statistics/.deps/scrm-frequency_spectrum.Tpo -c -o src/summary_statistics/scrm-frequency_spectrum.o `test -f 'src/summary_statistics/frequency_spectrum.cc' || echo './'`src/summary_statistics/frequency_spectrum.cc mv -f src/random/.deps/scrm-mersenne_twister.Tpo src/random/.deps/scrm-mersenne_twister.Po c++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -DNDEBUG -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -pipe -O2 -fno-strict-aliasing -Wall -MT src/summary_statistics/scrm-newick_tree.o -MD -MP -MF src/summary_statistics/.deps/scrm-newick_tree.Tpo -c -o src/summary_statistics/scrm-newick_tree.o `test -f 'src/summary_statistics/newick_tree.cc' || echo './'`src/summary_statistics/newick_tree.cc mv -f src/.deps/scrm-node_container.Tpo src/.deps/scrm-node_container.Po c++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -DNDEBUG -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -pipe -O2 -fno-strict-aliasing -Wall -MT src/summary_statistics/scrm-oriented_forest.o -MD -MP -MF src/summary_statistics/.deps/scrm-oriented_forest.Tpo -c -o src/summary_statistics/scrm-oriented_forest.o `test -f 'src/summary_statistics/oriented_forest.cc' || echo './'`src/summary_statistics/oriented_forest.cc mv -f src/.deps/scrm-time_interval.Tpo src/.deps/scrm-time_interval.Po mv -f src/.deps/scrm-model.Tpo src/.deps/scrm-model.Po mv -f src/summary_statistics/.deps/scrm-tmrca.Tpo src/summary_statistics/.deps/scrm-tmrca.Po mv -f src/summary_statistics/.deps/scrm-frequency_spectrum.Tpo src/summary_statistics/.deps/scrm-frequency_spectrum.Po mv -f src/.deps/scrm-scrm.Tpo src/.deps/scrm-scrm.Po mv -f src/summary_statistics/.deps/scrm-newick_tree.Tpo src/summary_statistics/.deps/scrm-newick_tree.Po mv -f src/summary_statistics/.deps/scrm-oriented_forest.Tpo src/summary_statistics/.deps/scrm-oriented_forest.Po mv -f src/summary_statistics/.deps/scrm-seg_sites.Tpo src/summary_statistics/.deps/scrm-seg_sites.Po mv -f src/.deps/scrm-forest.Tpo src/.deps/scrm-forest.Po mv -f src/.deps/scrm-param.Tpo src/.deps/scrm-param.Po c++ -DNDEBUG -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -pipe -O2 -fno-strict-aliasing -Wall -o scrm src/scrm-param.o src/scrm-forest.o src/scrm-node.o src/scrm-node_container.o src/scrm-time_interval.o src/scrm-model.o src/scrm-tree_point.o src/random/scrm-random_generator.o src/random/scrm-mersenne_twister.o src/random/scrm-fastfunc.o src/summary_statistics/scrm-tmrca.o src/summary_statistics/scrm-seg_sites.o src/summary_statistics/scrm-frequency_spectrum.o src/summary_statistics/scrm-newick_tree.o src/summary_statistics/scrm-oriented_forest.o src/scrm-scrm.o gmake[1]: Leaving directory '/construction/biology/scrm/scrm-1.7.4' SUCCEEDED 00:00:09 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for scrm-1.7.4 ===> Generating temporary packing list gmake[1]: Entering directory '/construction/biology/scrm/scrm-1.7.4' gmake[2]: Entering directory '/construction/biology/scrm/scrm-1.7.4' /bin/mkdir -p '/construction/biology/scrm/stage/usr/local/bin' install -s -m 555 scrm '/construction/biology/scrm/stage/usr/local/bin' /bin/mkdir -p '/construction/biology/scrm/stage/usr/local/man/man1' install -m 0644 doc/scrm.1 '/construction/biology/scrm/stage/usr/local/man/man1' gmake[2]: Leaving directory '/construction/biology/scrm/scrm-1.7.4' gmake[1]: Leaving directory '/construction/biology/scrm/scrm-1.7.4' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for scrm-1.7.4 file sizes/checksums [2]: 0% file sizes/checksums [2]: 100% packing files [2]: 0% packing files [2]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:00 TOTAL TIME 00:00:34