------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 UNAME_r=6.1 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/biology/rampler XDG_CONFIG_HOME=/construction/biology/rampler HOME=/construction/biology/rampler TMPDIR="/tmp" PATH=/construction/biology/rampler/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 CMAKE_PREFIX_PATH="/usr/local" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/biology/rampler XDG_CONFIG_HOME=/construction/biology/rampler HOME=/construction/biology/rampler TMPDIR="/tmp" PATH=/construction/biology/rampler/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -lz " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS=" -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/biology/rampler/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- CMAKE_BUILD_TYPE="release" OSREL=6.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/rampler" EXAMPLESDIR="share/examples/rampler" DATADIR="share/rampler" WWWDIR="www/rampler" ETCDIR="etc/rampler" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/rampler DOCSDIR=/usr/local/share/doc/rampler EXAMPLESDIR=/usr/local/share/examples/rampler WWWDIR=/usr/local/www/rampler ETCDIR=/usr/local/etc/rampler SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_COMPRESSION_FORMAT=.txz DEVELOPER=1 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600105 OSVERSION=9999999 OSREL=6.1 _OSRELEASE=6.1-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=12 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/bioparser-3.0.15.pkg Installing /packages/All/biosoup-g20201216.pkg Installing /packages/All/libnghttp2-1.44.0.pkg Installing /packages/All/openssl-1.1.1l,1.pkg Installing /packages/All/libssh2-1.9.0_3,3.pkg Installing /packages/All/ca_root_nss-3.69_1.pkg ===== Message from ca_root_nss-3.69_1: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem Installing /packages/All/curl-7.79.1.pkg Installing /packages/All/expat-2.4.1.pkg Installing /packages/All/libuv-1.42.0.pkg Installing /packages/All/indexinfo-0.3.1.pkg Installing /packages/All/gettext-runtime-0.21.pkg Installing /packages/All/rhash-1.4.2.pkg Installing /packages/All/liblz4-1.9.3,1.pkg Installing /packages/All/libarchive-3.5.1,1.pkg Installing /packages/All/ncurses-6.2.20210626.pkg ===== Message from ncurses-6.2.20210626: -- To get the terminfo database please install the terminfo-db package: pkg install terminfo-db Installing /packages/All/cmake-3.21.3.pkg SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> rampler-2.0.0 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> rampler-2.0.0 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by rampler-2.0.0 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> rampler-2.0.0 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by rampler-2.0.0 for building => SHA256 Checksum OK for rvaser-rampler-2.0.0_GH0.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> rampler-2.0.0 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by rampler-2.0.0 for building ===> Extracting for rampler-2.0.0 => SHA256 Checksum OK for rvaser-rampler-2.0.0_GH0.tar.gz. Extracted Memory Use: 0.04M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for rampler-2.0.0 ===> Applying ports patches for rampler-2.0.0 from /xports/biology/rampler/files SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> rampler-2.0.0 depends on package: bioparser>0 - found ===> rampler-2.0.0 depends on file: /usr/local/include/biosoup/nucleic_acid.hpp - found ===> rampler-2.0.0 depends on file: /usr/local/bin/cmake - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> rampler-2.0.0 depends on package: bioparser>0 - found ===> rampler-2.0.0 depends on file: /usr/local/include/biosoup/nucleic_acid.hpp - found ===> rampler-2.0.0 depends on file: /usr/local/bin/cmake - found ===> Configuring for rampler-2.0.0 ===> Performing out-of-source build /bin/mkdir -p /construction/biology/rampler/.build -- The CXX compiler identification is GNU 8.3.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_COMPILER CMAKE_C_FLAGS CMAKE_C_FLAGS_DEBUG CMAKE_C_FLAGS_RELEASE CMAKE_MODULE_LINKER_FLAGS CMAKE_SHARED_LINKER_FLAGS THREADS_HAVE_PTHREAD_ARG -- Build files have been written to: /construction/biology/rampler/.build SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for rampler-2.0.0 /usr/local/bin/cmake -S/construction/biology/rampler/rampler-2.0.0 -B/construction/biology/rampler/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/biology/rampler/.build/CMakeFiles /construction/biology/rampler/.build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all --- CMakeFiles/rampler.dir/all --- /usr/bin/make -f CMakeFiles/rampler.dir/build.make CMakeFiles/rampler.dir/depend --- CMakeFiles/rampler.dir/depend --- cd /construction/biology/rampler/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/biology/rampler/rampler-2.0.0 /construction/biology/rampler/rampler-2.0.0 /construction/biology/rampler/.build /construction/biology/rampler/.build /construction/biology/rampler/.build/CMakeFiles/rampler.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/rampler.dir/build.make CMakeFiles/rampler.dir/build --- CMakeFiles/rampler.dir/src/main.cpp.o --- --- CMakeFiles/rampler.dir/src/sampler.cpp.o --- --- CMakeFiles/rampler.dir/src/main.cpp.o --- [ 66%] Building CXX object CMakeFiles/rampler.dir/src/main.cpp.o --- CMakeFiles/rampler.dir/src/sampler.cpp.o --- [ 66%] Building CXX object CMakeFiles/rampler.dir/src/sampler.cpp.o /usr/bin/c++ -DRAMPLER_VERSION=\"v2.0.0\" -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wextra -pedantic -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -MD -MT CMakeFiles/rampler.dir/src/sampler.cpp.o -MF CMakeFiles/rampler.dir/src/sampler.cpp.o.d -o CMakeFiles/rampler.dir/src/sampler.cpp.o -c /construction/biology/rampler/rampler-2.0.0/src/sampler.cpp --- CMakeFiles/rampler.dir/src/main.cpp.o --- /usr/bin/c++ -DRAMPLER_VERSION=\"v2.0.0\" -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wextra -pedantic -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -MD -MT CMakeFiles/rampler.dir/src/main.cpp.o -MF CMakeFiles/rampler.dir/src/main.cpp.o.d -o CMakeFiles/rampler.dir/src/main.cpp.o -c /construction/biology/rampler/rampler-2.0.0/src/main.cpp --- bin/rampler --- [100%] Linking CXX executable bin/rampler /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rampler.dir/link.txt --verbose=1 /usr/bin/c++ -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wextra -pedantic -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -lz CMakeFiles/rampler.dir/src/main.cpp.o CMakeFiles/rampler.dir/src/sampler.cpp.o -o bin/rampler [100%] Built target rampler /usr/local/bin/cmake -E cmake_progress_start /construction/biology/rampler/.build/CMakeFiles 0 SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for rampler-2.0.0 ===> Generating temporary packing list /usr/local/bin/cmake -S/construction/biology/rampler/rampler-2.0.0 -B/construction/biology/rampler/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/biology/rampler/.build/CMakeFiles /construction/biology/rampler/.build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f CMakeFiles/rampler.dir/build.make CMakeFiles/rampler.dir/depend cd /construction/biology/rampler/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/biology/rampler/rampler-2.0.0 /construction/biology/rampler/rampler-2.0.0 /construction/biology/rampler/.build /construction/biology/rampler/.build /construction/biology/rampler/.build/CMakeFiles/rampler.dir/DependInfo.cmake Consolidate compiler generated dependencies of target rampler /usr/bin/make -f CMakeFiles/rampler.dir/build.make CMakeFiles/rampler.dir/build [100%] Built target rampler /usr/local/bin/cmake -E cmake_progress_start /construction/biology/rampler/.build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall Installing the project stripped... /usr/local/bin/cmake -DCMAKE_INSTALL_DO_STRIP=1 -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /construction/biology/rampler/stage/usr/local/bin/rampler ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for rampler-2.0.0 file sizes/checksums [1]: 0% file sizes/checksums [1]: 100% packing files [1]: 0% packing files [1]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:00 TOTAL TIME 00:00:09