------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/expat-2.2.8.txz Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/libffi-3.3_1.txz Installing /packages/All/ncurses-6.2.20200831.txz Installing /packages/All/readline-8.0.4.txz Installing /packages/All/gettext-runtime-0.21.txz Installing /packages/All/openssl-1.1.1g,1.txz Installing /packages/All/python27-2.7.18_1.txz ===== Message from python27-2.7.18_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter Installing /packages/All/py27-setuptools-44.0.0.txz ===== Message from py27-setuptools-44.0.0: -- Only /usr/local/bin/easy_install-2.7 script has been installed since Python 2.7 is not the default Python version. -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. SUCCEEDED 00:00:04 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py27-python-nexus-1.63 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. ===> py27-python-nexus-1.63 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-python-nexus-1.63 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. ===> py27-python-nexus-1.63 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-python-nexus-1.63 for building => SHA256 Checksum OK for python-nexus-1.63.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. ===> py27-python-nexus-1.63 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-python-nexus-1.63 for building ===> Extracting for py27-python-nexus-1.63 => SHA256 Checksum OK for python-nexus-1.63.tar.gz. Extracted Memory Use: 0.29M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py27-python-nexus-1.63 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py27-python-nexus-1.63 depends on package: py27-setuptools>0 - found ===> py27-python-nexus-1.63 depends on file: /usr/local/bin/python2.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py27-python-nexus-1.63 depends on package: py27-setuptools>0 - found ===> py27-python-nexus-1.63 depends on file: /usr/local/bin/python2.7 - found ===> Configuring for py27-python-nexus-1.63 running config SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py27-python-nexus-1.63 running build running build_py creating build creating build/lib creating build/lib/nexus copying nexus/checker.py -> build/lib/nexus copying nexus/writer.py -> build/lib/nexus copying nexus/exceptions.py -> build/lib/nexus copying nexus/__init__.py -> build/lib/nexus copying nexus/reader.py -> build/lib/nexus creating build/lib/nexus/tools copying nexus/tools/binarise.py -> build/lib/nexus/tools copying nexus/tools/multistatise.py -> build/lib/nexus/tools copying nexus/tools/__init__.py -> build/lib/nexus/tools copying nexus/tools/check_for_valid_NexusReader.py -> build/lib/nexus/tools copying nexus/tools/sites.py -> build/lib/nexus/tools copying nexus/tools/shufflenexus.py -> build/lib/nexus/tools copying nexus/tools/combine_nexuses.py -> build/lib/nexus/tools copying nexus/tools/check_zeros.py -> build/lib/nexus/tools creating build/lib/nexus/handlers copying nexus/handlers/taxa.py -> build/lib/nexus/handlers copying nexus/handlers/__init__.py -> build/lib/nexus/handlers copying nexus/handlers/tree.py -> build/lib/nexus/handlers copying nexus/handlers/data.py -> build/lib/nexus/handlers creating build/lib/nexus/test copying nexus/test/test_reader_manipulation.py -> build/lib/nexus/test copying nexus/test/test_handler_DataHandler.py -> build/lib/nexus/test copying nexus/test/test_handler_TaxaHandler.py -> build/lib/nexus/test copying nexus/test/test_regressions.py -> build/lib/nexus/test copying nexus/test/test_handler_GenericHandler.py -> build/lib/nexus/test copying nexus/test/test_checker.py -> build/lib/nexus/test copying nexus/test/test_handler_TreeHandler.py -> build/lib/nexus/test copying nexus/test/__init__.py -> build/lib/nexus/test copying nexus/test/test_maddison.py -> build/lib/nexus/test copying nexus/test/test_reader.py -> build/lib/nexus/test copying nexus/test/test_writer.py -> build/lib/nexus/test creating build/lib/nexus/bin copying nexus/bin/__init__.py -> build/lib/nexus/bin copying nexus/bin/nexus_treemanip.py -> build/lib/nexus/bin copying nexus/bin/nexus_anonymise.py -> build/lib/nexus/bin copying nexus/bin/nexus_describetaxa.py -> build/lib/nexus/bin copying nexus/bin/nexus_describecharacter.py -> build/lib/nexus/bin copying nexus/bin/nexus_multistate2binary.py -> build/lib/nexus/bin copying nexus/bin/nexus_to_fasta.py -> build/lib/nexus/bin copying nexus/bin/nexus_nexusmanip.py -> build/lib/nexus/bin copying nexus/bin/nexus_binary2multistate.py -> build/lib/nexus/bin copying nexus/bin/nexus_combine_nexus.py -> build/lib/nexus/bin copying nexus/bin/nexus_tally.py -> build/lib/nexus/bin copying nexus/bin/nexus_randomise.py -> build/lib/nexus/bin copying nexus/bin/nexuscheck.py -> build/lib/nexus/bin copying nexus/bin/nexus_deinterleave.py -> build/lib/nexus/bin running egg_info writing requirements to python_nexus.egg-info/requires.txt writing python_nexus.egg-info/PKG-INFO writing top-level names to python_nexus.egg-info/top_level.txt writing dependency_links to python_nexus.egg-info/dependency_links.txt reading manifest file 'python_nexus.egg-info/SOURCES.txt' writing manifest file 'python_nexus.egg-info/SOURCES.txt' running build_scripts creating build/scripts-2.7 copying and adjusting nexus/bin/nexus_anonymise.py -> build/scripts-2.7 copying and adjusting nexus/bin/nexus_binary2multistate.py -> build/scripts-2.7 copying and adjusting nexus/bin/nexus_combine_nexus.py -> build/scripts-2.7 copying and adjusting nexus/bin/nexus_deinterleave.py -> build/scripts-2.7 copying and adjusting nexus/bin/nexus_describecharacter.py -> build/scripts-2.7 copying and adjusting nexus/bin/nexus_describetaxa.py -> build/scripts-2.7 copying and adjusting nexus/bin/nexus_multistate2binary.py -> build/scripts-2.7 copying and adjusting nexus/bin/nexus_nexusmanip.py -> build/scripts-2.7 copying and adjusting nexus/bin/nexus_randomise.py -> build/scripts-2.7 copying and adjusting nexus/bin/nexus_tally.py -> build/scripts-2.7 copying and adjusting nexus/bin/nexus_to_fasta.py -> build/scripts-2.7 copying and adjusting nexus/bin/nexus_treemanip.py -> build/scripts-2.7 changing mode of build/scripts-2.7/nexus_anonymise.py from 644 to 755 changing mode of build/scripts-2.7/nexus_binary2multistate.py from 644 to 755 changing mode of build/scripts-2.7/nexus_combine_nexus.py from 644 to 755 changing mode of build/scripts-2.7/nexus_deinterleave.py from 644 to 755 changing mode of build/scripts-2.7/nexus_describecharacter.py from 644 to 755 changing mode of build/scripts-2.7/nexus_describetaxa.py from 644 to 755 changing mode of build/scripts-2.7/nexus_multistate2binary.py from 644 to 755 changing mode of build/scripts-2.7/nexus_nexusmanip.py from 644 to 755 changing mode of build/scripts-2.7/nexus_randomise.py from 644 to 755 changing mode of build/scripts-2.7/nexus_tally.py from 644 to 755 changing mode of build/scripts-2.7/nexus_to_fasta.py from 644 to 755 changing mode of build/scripts-2.7/nexus_treemanip.py from 644 to 755 SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py27-python-nexus-1.63 depends on package: py27-setuptools>0 - found ===> py27-python-nexus-1.63 depends on file: /usr/local/bin/python2.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py27-python-nexus-1.63 ===> py27-python-nexus-1.63 depends on package: py27-setuptools>0 - found ===> py27-python-nexus-1.63 depends on file: /usr/local/bin/python2.7 - found ===> Generating temporary packing list running install running build running build_py running egg_info writing requirements to python_nexus.egg-info/requires.txt writing python_nexus.egg-info/PKG-INFO writing top-level names to python_nexus.egg-info/top_level.txt writing dependency_links to python_nexus.egg-info/dependency_links.txt reading manifest file 'python_nexus.egg-info/SOURCES.txt' writing manifest file 'python_nexus.egg-info/SOURCES.txt' running build_scripts running install_lib creating /construction/biology/python-nexus/stage/usr/local/lib/python2.7 creating /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages creating /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus creating /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/bin copying build/lib/nexus/bin/nexus_deinterleave.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/bin copying build/lib/nexus/bin/__init__.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/bin copying build/lib/nexus/bin/nexus_describetaxa.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/bin copying build/lib/nexus/bin/nexus_combine_nexus.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/bin copying build/lib/nexus/bin/nexus_tally.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/bin copying build/lib/nexus/bin/nexus_nexusmanip.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/bin copying build/lib/nexus/bin/nexus_randomise.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/bin copying build/lib/nexus/bin/nexus_binary2multistate.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/bin copying build/lib/nexus/bin/nexus_multistate2binary.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/bin copying build/lib/nexus/bin/nexuscheck.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/bin copying build/lib/nexus/bin/nexus_describecharacter.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/bin copying build/lib/nexus/bin/nexus_to_fasta.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/bin copying build/lib/nexus/bin/nexus_treemanip.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/bin copying build/lib/nexus/bin/nexus_anonymise.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/bin copying build/lib/nexus/checker.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus creating /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/test copying build/lib/nexus/test/test_writer.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/test copying build/lib/nexus/test/test_handler_TaxaHandler.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/test copying build/lib/nexus/test/test_handler_TreeHandler.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/test copying build/lib/nexus/test/test_maddison.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/test copying build/lib/nexus/test/test_handler_DataHandler.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/test copying build/lib/nexus/test/test_regressions.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/test copying build/lib/nexus/test/__init__.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/test copying build/lib/nexus/test/test_handler_GenericHandler.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/test copying build/lib/nexus/test/test_reader.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/test copying build/lib/nexus/test/test_reader_manipulation.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/test copying build/lib/nexus/test/test_checker.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/test creating /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/tools copying build/lib/nexus/tools/check_for_valid_NexusReader.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/tools copying build/lib/nexus/tools/sites.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/tools copying build/lib/nexus/tools/check_zeros.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/tools copying build/lib/nexus/tools/binarise.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/tools copying build/lib/nexus/tools/multistatise.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/tools copying build/lib/nexus/tools/shufflenexus.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/tools copying build/lib/nexus/tools/combine_nexuses.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/tools copying build/lib/nexus/tools/__init__.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/tools copying build/lib/nexus/__init__.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus copying build/lib/nexus/writer.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus copying build/lib/nexus/exceptions.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus creating /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/handlers copying build/lib/nexus/handlers/__init__.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/handlers copying build/lib/nexus/handlers/data.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/handlers copying build/lib/nexus/handlers/taxa.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/handlers copying build/lib/nexus/handlers/tree.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/handlers copying build/lib/nexus/reader.py -> /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/bin/nexus_deinterleave.py to nexus_deinterleave.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/bin/__init__.py to __init__.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/bin/nexus_describetaxa.py to nexus_describetaxa.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/bin/nexus_combine_nexus.py to nexus_combine_nexus.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/bin/nexus_tally.py to nexus_tally.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/bin/nexus_nexusmanip.py to nexus_nexusmanip.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/bin/nexus_randomise.py to nexus_randomise.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/bin/nexus_binary2multistate.py to nexus_binary2multistate.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/bin/nexus_multistate2binary.py to nexus_multistate2binary.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/bin/nexuscheck.py to nexuscheck.pyc File "/usr/local/lib/python2.7/site-packages/nexus/bin/nexuscheck.py", line 3 SyntaxError: from __future__ imports must occur at the beginning of the file byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/bin/nexus_describecharacter.py to nexus_describecharacter.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/bin/nexus_to_fasta.py to nexus_to_fasta.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/bin/nexus_treemanip.py to nexus_treemanip.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/bin/nexus_anonymise.py to nexus_anonymise.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/checker.py to checker.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/test/test_writer.py to test_writer.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/test/test_handler_TaxaHandler.py to test_handler_TaxaHandler.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/test/test_handler_TreeHandler.py to test_handler_TreeHandler.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/test/test_maddison.py to test_maddison.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/test/test_handler_DataHandler.py to test_handler_DataHandler.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/test/test_regressions.py to test_regressions.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/test/__init__.py to __init__.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/test/test_handler_GenericHandler.py to test_handler_GenericHandler.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/test/test_reader.py to test_reader.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/test/test_reader_manipulation.py to test_reader_manipulation.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/test/test_checker.py to test_checker.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/tools/check_for_valid_NexusReader.py to check_for_valid_NexusReader.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/tools/sites.py to sites.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/tools/check_zeros.py to check_zeros.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/tools/binarise.py to binarise.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/tools/multistatise.py to multistatise.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/tools/shufflenexus.py to shufflenexus.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/tools/combine_nexuses.py to combine_nexuses.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/tools/__init__.py to __init__.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/__init__.py to __init__.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/writer.py to writer.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/exceptions.py to exceptions.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/handlers/__init__.py to __init__.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/handlers/data.py to data.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/handlers/taxa.py to taxa.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/handlers/tree.py to tree.pyc byte-compiling /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/nexus/reader.py to reader.pyc writing byte-compilation script '/tmp/tmpd64Q7a.py' /usr/local/bin/python2.7 -O /tmp/tmpd64Q7a.py File "/usr/local/lib/python2.7/site-packages/nexus/bin/nexuscheck.py", line 3 SyntaxError: from __future__ imports must occur at the beginning of the file removing /tmp/tmpd64Q7a.py running install_egg_info Copying python_nexus.egg-info to /construction/biology/python-nexus/stage/usr/local/lib/python2.7/site-packages/python_nexus-1.63-py2.7.egg-info running install_scripts copying build/scripts-2.7/nexus_describecharacter.py -> /construction/biology/python-nexus/stage/usr/local/bin copying build/scripts-2.7/nexus_tally.py -> /construction/biology/python-nexus/stage/usr/local/bin copying build/scripts-2.7/nexus_randomise.py -> /construction/biology/python-nexus/stage/usr/local/bin copying build/scripts-2.7/nexus_binary2multistate.py -> /construction/biology/python-nexus/stage/usr/local/bin copying build/scripts-2.7/nexus_multistate2binary.py -> /construction/biology/python-nexus/stage/usr/local/bin copying build/scripts-2.7/nexus_nexusmanip.py -> /construction/biology/python-nexus/stage/usr/local/bin copying build/scripts-2.7/nexus_describetaxa.py -> /construction/biology/python-nexus/stage/usr/local/bin copying build/scripts-2.7/nexus_deinterleave.py -> /construction/biology/python-nexus/stage/usr/local/bin copying build/scripts-2.7/nexus_anonymise.py -> /construction/biology/python-nexus/stage/usr/local/bin copying build/scripts-2.7/nexus_to_fasta.py -> /construction/biology/python-nexus/stage/usr/local/bin copying build/scripts-2.7/nexus_combine_nexus.py -> /construction/biology/python-nexus/stage/usr/local/bin copying build/scripts-2.7/nexus_treemanip.py -> /construction/biology/python-nexus/stage/usr/local/bin changing mode of /construction/biology/python-nexus/stage/usr/local/bin/nexus_describecharacter.py to 755 changing mode of /construction/biology/python-nexus/stage/usr/local/bin/nexus_tally.py to 755 changing mode of /construction/biology/python-nexus/stage/usr/local/bin/nexus_randomise.py to 755 changing mode of /construction/biology/python-nexus/stage/usr/local/bin/nexus_binary2multistate.py to 755 changing mode of /construction/biology/python-nexus/stage/usr/local/bin/nexus_multistate2binary.py to 755 changing mode of /construction/biology/python-nexus/stage/usr/local/bin/nexus_nexusmanip.py to 755 changing mode of /construction/biology/python-nexus/stage/usr/local/bin/nexus_describetaxa.py to 755 changing mode of /construction/biology/python-nexus/stage/usr/local/bin/nexus_deinterleave.py to 755 changing mode of /construction/biology/python-nexus/stage/usr/local/bin/nexus_anonymise.py to 755 changing mode of /construction/biology/python-nexus/stage/usr/local/bin/nexus_to_fasta.py to 755 changing mode of /construction/biology/python-nexus/stage/usr/local/bin/nexus_combine_nexus.py to 755 changing mode of /construction/biology/python-nexus/stage/usr/local/bin/nexus_treemanip.py to 755 writing list of installed files to '/construction/biology/python-nexus/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py27-python-nexus-1.63 file sizes/checksums [141]: 0% file sizes/checksums [141]: 70% file sizes/checksums [141]: 100% packing files [141]: 0% packing files [141]: 70% packing files [141]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:01 TOTAL TIME 00:00:08