------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 FLAVOR=py39 UNAME_r=6.5 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/construction/biology/py-ont-fast5-api XDG_CONFIG_HOME=/construction/biology/py-ont-fast5-api XDG_CACHE_HOME=/construction/biology/py-ont-fast5-api/.cache HOME=/construction/biology/py-ont-fast5-api TMPDIR="/tmp" PATH=/construction/biology/py-ont-fast5-api/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/biology/py-ont-fast5-api/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/biology/py-ont-fast5-api XDG_CONFIG_HOME=/construction/biology/py-ont-fast5-api XDG_CACHE_HOME=/construction/biology/py-ont-fast5-api/.cache HOME=/construction/biology/py-ont-fast5-api TMPDIR="/tmp" PATH=/construction/biology/py-ont-fast5-api/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/biology/py-ont-fast5-api/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/biology/py-ont-fast5-api/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=6.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/py39-ont-fast5-api" EXAMPLESDIR="share/examples/py39-ont-fast5-api" DATADIR="share/py39-ont-fast5-api" WWWDIR="www/py39-ont-fast5-api" ETCDIR="etc/py39-ont-fast5-api" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py39-ont-fast5-api DOCSDIR=/usr/local/share/doc/py39-ont-fast5-api EXAMPLESDIR=/usr/local/share/examples/py39-ont-fast5-api WWWDIR=/usr/local/www/py39-ont-fast5-api ETCDIR=/usr/local/etc/py39-ont-fast5-api SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes DFLY_STING_XFAIL=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_COMPRESSION_FORMAT=.tgz DEVELOPER=1 WITH_CCACHE_BUILD=yes CCACHE_DIR=/ccache UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600503 OSVERSION=9999999 OSREL=6.5 _OSRELEASE=6.5-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=13 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.pkg Installing /packages/All/libffi-3.4.4.pkg Installing /packages/All/expat-2.5.0.pkg Installing /packages/All/mpdecimal-2.5.1.pkg Installing /packages/All/ncurses-6.4.pkg ===== Message from ncurses-6.4: -- To get the terminfo database please install the terminfo-db package: pkg install terminfo-db Installing /packages/All/readline-8.2.1.pkg Installing /packages/All/gettext-runtime-0.21.1.pkg Installing /packages/All/openssl-1.1.1u,1.pkg Installing /packages/All/python39-3.9.17.pkg ===== Message from python39-3.9.17: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 Installing /packages/All/py39-setuptools-63.1.0_1.pkg Installing /packages/All/libaec-1.0.6.pkg Installing /packages/All/gmp-6.2.1.pkg Installing /packages/All/mpfr-4.2.0_1,1.pkg Installing /packages/All/mpc-1.3.1_1.pkg UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/liblz4-1.9.4,1.pkg Installing /packages/All/zstd-1.5.5.pkg Installing /packages/All/binutils-2.40_4,1.pkg Installing /packages/All/gcc12-12.2.0_6.pkg ===== Message from gcc12-12.2.0_6: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc12 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/hdf5-1.12.2_2,1.pkg Installing /packages/All/vbz-compression-1.0.3.pkg Installing /packages/All/metis-5.1.0_9.pkg ===== Message from metis-5.1.0_9: -- ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing Installing /packages/All/openblas-0.3.20_1,1.pkg Installing /packages/All/suitesparse-config-7.0.1_1.pkg Installing /packages/All/suitesparse-amd-3.0.3_1.pkg Installing /packages/All/suitesparse-camd-3.0.3_1.pkg Installing /packages/All/suitesparse-colamd-3.0.3_1.pkg Installing /packages/All/suitesparse-ccolamd-3.0.3_1.pkg Installing /packages/All/suitesparse-cholmod-4.0.3_1.pkg Installing /packages/All/suitesparse-umfpack-6.1.0_1.pkg Installing /packages/All/py39-numpy-1.24.1_4,1.pkg Installing /packages/All/py39-h5py-3.8.0_1.pkg Installing /packages/All/py39-six-1.16.0.pkg Installing /packages/All/py39-progressbar-2.5.pkg UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:11 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py39-ont-fast5-api-4.0.2_1 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py39-ont-fast5-api-4.0.2_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-ont-fast5-api-4.0.2_1 for building SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py39-ont-fast5-api-4.0.2_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-ont-fast5-api-4.0.2_1 for building => SHA256 Checksum OK for nanoporetech-ont_fast5_api-release_4.0.2_GH0.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py39-ont-fast5-api-4.0.2_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-ont-fast5-api-4.0.2_1 for building ===> Extracting for py39-ont-fast5-api-4.0.2_1 => SHA256 Checksum OK for nanoporetech-ont_fast5_api-release_4.0.2_GH0.tar.gz. Extracted Memory Use: 10.01M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py39-ont-fast5-api-4.0.2_1 ===> Applying ports patches for py39-ont-fast5-api-4.0.2_1 from /xports/biology/py-ont-fast5-api/files /bin/rm -f /construction/biology/py-ont-fast5-api/ont_fast5_api-release_4.0.2/ont_fast5_api/vbz_plugin/* SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py39-ont-fast5-api-4.0.2_1 depends on package: py39-setuptools>=63.1.0 - found ===> py39-ont-fast5-api-4.0.2_1 depends on file: /usr/local/bin/python3.9 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> py39-ont-fast5-api-4.0.2_1 depends on shared library: libvbz_hdf_plugin.so - found (/usr/local/hdf5/lib/plugin/libvbz_hdf_plugin.so) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py39-ont-fast5-api-4.0.2_1 depends on package: py39-setuptools>=63.1.0 - found ===> py39-ont-fast5-api-4.0.2_1 depends on file: /usr/local/bin/python3.9 - found ===> py39-ont-fast5-api-4.0.2_1 depends on shared library: libvbz_hdf_plugin.so - found (/usr/local/hdf5/lib/plugin/libvbz_hdf_plugin.so) ===> Configuring for py39-ont-fast5-api-4.0.2_1 running config SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py39-ont-fast5-api-4.0.2_1 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> py39-ont-fast5-api-4.0.2_1 depends on package: py39-h5py>=2.2.0 - found ===> py39-ont-fast5-api-4.0.2_1 depends on package: py39-six>0 - found ===> py39-ont-fast5-api-4.0.2_1 depends on package: py39-progressbar>0 - found ===> py39-ont-fast5-api-4.0.2_1 depends on package: py39-setuptools>=63.1.0 - found ===> py39-ont-fast5-api-4.0.2_1 depends on file: /usr/local/bin/python3.9 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py39-ont-fast5-api-4.0.2_1 ===> py39-ont-fast5-api-4.0.2_1 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> py39-ont-fast5-api-4.0.2_1 depends on package: py39-h5py>=2.2.0 - found ===> py39-ont-fast5-api-4.0.2_1 depends on package: py39-six>0 - found ===> py39-ont-fast5-api-4.0.2_1 depends on package: py39-progressbar>0 - found ===> py39-ont-fast5-api-4.0.2_1 depends on package: py39-setuptools>=63.1.0 - found ===> py39-ont-fast5-api-4.0.2_1 depends on file: /usr/local/bin/python3.9 - found ===> Generating temporary packing list running install /usr/local/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py creating build creating build/lib creating build/lib/ont_fast5_api copying ont_fast5_api/__init__.py -> build/lib/ont_fast5_api copying ont_fast5_api/compression_settings.py -> build/lib/ont_fast5_api copying ont_fast5_api/data_sanitisation.py -> build/lib/ont_fast5_api copying ont_fast5_api/fast5_file.py -> build/lib/ont_fast5_api copying ont_fast5_api/fast5_info.py -> build/lib/ont_fast5_api copying ont_fast5_api/fast5_interface.py -> build/lib/ont_fast5_api copying ont_fast5_api/fast5_read.py -> build/lib/ont_fast5_api copying ont_fast5_api/helpers.py -> build/lib/ont_fast5_api copying ont_fast5_api/multi_fast5.py -> build/lib/ont_fast5_api copying ont_fast5_api/static_data.py -> build/lib/ont_fast5_api creating build/lib/ont_fast5_api/analysis_tools copying ont_fast5_api/analysis_tools/__init__.py -> build/lib/ont_fast5_api/analysis_tools copying ont_fast5_api/analysis_tools/alignment.py -> build/lib/ont_fast5_api/analysis_tools copying ont_fast5_api/analysis_tools/base_tool.py -> build/lib/ont_fast5_api/analysis_tools copying ont_fast5_api/analysis_tools/basecall_1d.py -> build/lib/ont_fast5_api/analysis_tools copying ont_fast5_api/analysis_tools/basecall_2d.py -> build/lib/ont_fast5_api/analysis_tools copying ont_fast5_api/analysis_tools/event_detection.py -> build/lib/ont_fast5_api/analysis_tools copying ont_fast5_api/analysis_tools/segmentation.py -> build/lib/ont_fast5_api/analysis_tools creating build/lib/ont_fast5_api/conversion_tools copying ont_fast5_api/conversion_tools/conversion_utils.py -> build/lib/ont_fast5_api/conversion_tools copying ont_fast5_api/conversion_tools/__init__.py -> build/lib/ont_fast5_api/conversion_tools copying ont_fast5_api/conversion_tools/check_file_compression.py -> build/lib/ont_fast5_api/conversion_tools copying ont_fast5_api/conversion_tools/compress_fast5.py -> build/lib/ont_fast5_api/conversion_tools copying ont_fast5_api/conversion_tools/demux_fast5.py -> build/lib/ont_fast5_api/conversion_tools copying ont_fast5_api/conversion_tools/fast5_subset.py -> build/lib/ont_fast5_api/conversion_tools copying ont_fast5_api/conversion_tools/multi_to_single_fast5.py -> build/lib/ont_fast5_api/conversion_tools copying ont_fast5_api/conversion_tools/single_to_multi_fast5.py -> build/lib/ont_fast5_api/conversion_tools running install_lib creating /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9 creating /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages creating /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api copying build/lib/ont_fast5_api/__init__.py -> /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api copying build/lib/ont_fast5_api/compression_settings.py -> /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api copying build/lib/ont_fast5_api/data_sanitisation.py -> /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api copying build/lib/ont_fast5_api/fast5_file.py -> /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api copying build/lib/ont_fast5_api/fast5_info.py -> /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api copying build/lib/ont_fast5_api/fast5_interface.py -> /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api copying build/lib/ont_fast5_api/fast5_read.py -> /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api copying build/lib/ont_fast5_api/helpers.py -> /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api copying build/lib/ont_fast5_api/multi_fast5.py -> /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api copying build/lib/ont_fast5_api/static_data.py -> /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api creating /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/analysis_tools copying build/lib/ont_fast5_api/analysis_tools/__init__.py -> /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/analysis_tools copying build/lib/ont_fast5_api/analysis_tools/alignment.py -> /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/analysis_tools copying build/lib/ont_fast5_api/analysis_tools/base_tool.py -> /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/analysis_tools copying build/lib/ont_fast5_api/analysis_tools/basecall_1d.py -> /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/analysis_tools copying build/lib/ont_fast5_api/analysis_tools/basecall_2d.py -> /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/analysis_tools copying build/lib/ont_fast5_api/analysis_tools/event_detection.py -> /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/analysis_tools copying build/lib/ont_fast5_api/analysis_tools/segmentation.py -> /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/analysis_tools creating /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/conversion_tools copying build/lib/ont_fast5_api/conversion_tools/conversion_utils.py -> /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/conversion_tools copying build/lib/ont_fast5_api/conversion_tools/__init__.py -> /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/conversion_tools copying build/lib/ont_fast5_api/conversion_tools/check_file_compression.py -> /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/conversion_tools copying build/lib/ont_fast5_api/conversion_tools/compress_fast5.py -> /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/conversion_tools copying build/lib/ont_fast5_api/conversion_tools/demux_fast5.py -> /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/conversion_tools copying build/lib/ont_fast5_api/conversion_tools/fast5_subset.py -> /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/conversion_tools copying build/lib/ont_fast5_api/conversion_tools/multi_to_single_fast5.py -> /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/conversion_tools copying build/lib/ont_fast5_api/conversion_tools/single_to_multi_fast5.py -> /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/conversion_tools byte-compiling /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/compression_settings.py to compression_settings.cpython-39.pyc byte-compiling /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/data_sanitisation.py to data_sanitisation.cpython-39.pyc byte-compiling /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/fast5_file.py to fast5_file.cpython-39.pyc byte-compiling /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/fast5_info.py to fast5_info.cpython-39.pyc byte-compiling /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/fast5_interface.py to fast5_interface.cpython-39.pyc byte-compiling /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/fast5_read.py to fast5_read.cpython-39.pyc byte-compiling /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/helpers.py to helpers.cpython-39.pyc byte-compiling /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/multi_fast5.py to multi_fast5.cpython-39.pyc byte-compiling /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/static_data.py to static_data.cpython-39.pyc byte-compiling /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/analysis_tools/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/analysis_tools/alignment.py to alignment.cpython-39.pyc byte-compiling /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/analysis_tools/base_tool.py to base_tool.cpython-39.pyc byte-compiling /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/analysis_tools/basecall_1d.py to basecall_1d.cpython-39.pyc byte-compiling /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/analysis_tools/basecall_2d.py to basecall_2d.cpython-39.pyc byte-compiling /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/analysis_tools/event_detection.py to event_detection.cpython-39.pyc byte-compiling /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/analysis_tools/segmentation.py to segmentation.cpython-39.pyc /usr/local/lib/python3.9/site-packages/ont_fast5_api/analysis_tools/segmentation.py:92: SyntaxWarning: "is" with a literal. Did you mean "=="? byte-compiling /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/conversion_tools/conversion_utils.py to conversion_utils.cpython-39.pyc byte-compiling /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/conversion_tools/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/conversion_tools/check_file_compression.py to check_file_compression.cpython-39.pyc byte-compiling /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/conversion_tools/compress_fast5.py to compress_fast5.cpython-39.pyc byte-compiling /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/conversion_tools/demux_fast5.py to demux_fast5.cpython-39.pyc byte-compiling /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/conversion_tools/fast5_subset.py to fast5_subset.cpython-39.pyc byte-compiling /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/conversion_tools/multi_to_single_fast5.py to multi_to_single_fast5.cpython-39.pyc byte-compiling /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api/conversion_tools/single_to_multi_fast5.py to single_to_multi_fast5.cpython-39.pyc writing byte-compilation script '/tmp/tmpirlx42ns.py' /usr/local/bin/python3.9 /tmp/tmpirlx42ns.py /usr/local/lib/python3.9/site-packages/ont_fast5_api/analysis_tools/segmentation.py:92: SyntaxWarning: "is" with a literal. Did you mean "=="? removing /tmp/tmpirlx42ns.py running install_egg_info running egg_info creating ont_fast5_api.egg-info writing ont_fast5_api.egg-info/PKG-INFO writing dependency_links to ont_fast5_api.egg-info/dependency_links.txt writing entry points to ont_fast5_api.egg-info/entry_points.txt writing requirements to ont_fast5_api.egg-info/requires.txt writing top-level names to ont_fast5_api.egg-info/top_level.txt writing manifest file 'ont_fast5_api.egg-info/SOURCES.txt' reading manifest file 'ont_fast5_api.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'README.md' no previously-included directories found matching 'build' no previously-included directories found matching 'docs' adding license file 'LICENSE.md' writing manifest file 'ont_fast5_api.egg-info/SOURCES.txt' Copying ont_fast5_api.egg-info to /construction/biology/py-ont-fast5-api/stage/usr/local/lib/python3.9/site-packages/ont_fast5_api-4.0.1-py3.9.egg-info running install_scripts Installing check_compression script to /construction/biology/py-ont-fast5-api/stage/usr/local/bin Installing compress_fast5 script to /construction/biology/py-ont-fast5-api/stage/usr/local/bin Installing demux_fast5 script to /construction/biology/py-ont-fast5-api/stage/usr/local/bin Installing fast5_subset script to /construction/biology/py-ont-fast5-api/stage/usr/local/bin Installing multi_to_single_fast5 script to /construction/biology/py-ont-fast5-api/stage/usr/local/bin Installing single_to_multi_fast5 script to /construction/biology/py-ont-fast5-api/stage/usr/local/bin writing list of installed files to '/construction/biology/py-ont-fast5-api/.PLIST.pymodtmp' ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX Move: bin/check_compression --> bin/check_compression-3.9 Link: @bin/check_compression --> bin/check_compression-3.9 Move: bin/compress_fast5 --> bin/compress_fast5-3.9 Link: @bin/compress_fast5 --> bin/compress_fast5-3.9 Move: bin/demux_fast5 --> bin/demux_fast5-3.9 Link: @bin/demux_fast5 --> bin/demux_fast5-3.9 Move: bin/fast5_subset --> bin/fast5_subset-3.9 Link: @bin/fast5_subset --> bin/fast5_subset-3.9 Move: bin/multi_to_single_fast5 --> bin/multi_to_single_fast5-3.9 Link: @bin/multi_to_single_fast5 --> bin/multi_to_single_fast5-3.9 Move: bin/single_to_multi_fast5 --> bin/single_to_multi_fast5-3.9 Link: @bin/single_to_multi_fast5 --> bin/single_to_multi_fast5-3.9 ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py39-ont-fast5-api-4.0.2_1 file sizes/checksums [93]: 0% file sizes/checksums [93]: 100% Service unavailablepacking files [93]: 0% packing files [93]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:00 TOTAL TIME 00:00:20