------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 FLAVOR=py37 UNAME_r=6.1 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- PYTHON="/usr/local/bin/python3.7" XDG_DATA_HOME=/construction/biology/py-gtfparse XDG_CONFIG_HOME=/construction/biology/py-gtfparse HOME=/construction/biology/py-gtfparse TMPDIR="/tmp" PATH=/construction/biology/py-gtfparse/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/biology/py-gtfparse XDG_CONFIG_HOME=/construction/biology/py-gtfparse HOME=/construction/biology/py-gtfparse TMPDIR="/tmp" PATH=/construction/biology/py-gtfparse/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/biology/py-gtfparse/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- PYTHON_INCLUDEDIR=include/python3.7m PYTHON_LIBDIR=lib/python3.7 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=lib/python3.7/site-packages PYTHON_SUFFIX=37 PYTHON_EXT_SUFFIX= PYTHON_VER=3.7 PYTHON_VERSION=python3.7 PYTHON2="@comment " PYTHON3="" OSREL=6.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/gtfparse" EXAMPLESDIR="share/examples/gtfparse" DATADIR="share/gtfparse" WWWDIR="www/gtfparse" ETCDIR="etc/gtfparse" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/gtfparse DOCSDIR=/usr/local/share/doc/gtfparse EXAMPLESDIR=/usr/local/share/examples/gtfparse WWWDIR=/usr/local/www/gtfparse ETCDIR=/usr/local/etc/gtfparse SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_SUFX=.txz DEVELOPER=1 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600100 OSVERSION=9999999 OSREL=6.1 _OSRELEASE=6.1-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=10 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/libffi-3.3_1.txz Installing /packages/All/expat-2.2.10.txz Installing /packages/All/ncurses-6.2.20210313_1.txz ===== Message from ncurses-6.2.20210313_1: -- { type: install message: < NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Installing /packages/All/mpc-1.2.0.txz Installing /packages/All/binutils-2.33.1_4,1.txz Installing /packages/All/gcc8-8.4.0_1.txz ===== Message from gcc8-8.4.0_1: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.13_1,1.txz Installing /packages/All/suitesparse-5.9.0.txz Installing /packages/All/py37-numpy-1.16.6,1.txz Installing /packages/All/py37-cython-0.29.21.txz Installing /packages/All/py37-six-1.15.0.txz Installing /packages/All/py37-dateutil-2.8.1.txz Installing /packages/All/py37-pytz-2020.5,1.txz Installing /packages/All/libedit-3.1.20210216,1.txz Installing /packages/All/sqlite3-3.34.1,1.txz Installing /packages/All/py37-sqlite3-3.7.10_7.txz Installing /packages/All/py37-bottleneck-1.3.2.txz Installing /packages/All/py37-numexpr-2.7.2.txz Installing /packages/All/py37-pandas-1.2.0,1.txz ===== Message from py37-pandas-1.2.0,1: -- Install math/py-statsmodels to enable parts of pandas.stats. Install devel/py-xarray to enable the to_xarray() function. SUCCEEDED 00:00:46 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py37-gtfparse-1.2.1 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py37-gtfparse-1.2.1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-gtfparse-1.2.1 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py37-gtfparse-1.2.1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-gtfparse-1.2.1 for building => SHA256 Checksum OK for gtfparse-1.2.1.tar.gz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py37-gtfparse-1.2.1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-gtfparse-1.2.1 for building ===> Extracting for py37-gtfparse-1.2.1 => SHA256 Checksum OK for gtfparse-1.2.1.tar.gz. Extracted Memory Use: 0.10M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py37-gtfparse-1.2.1 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py37-gtfparse-1.2.1 depends on package: py37-setuptools>0 - found ===> py37-gtfparse-1.2.1 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py37-gtfparse-1.2.1 depends on package: py37-setuptools>0 - found ===> py37-gtfparse-1.2.1 depends on file: /usr/local/bin/python3.7 - found ===> Configuring for py37-gtfparse-1.2.1 running config SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py37-gtfparse-1.2.1 running build running build_py creating build creating build/lib creating build/lib/gtfparse copying gtfparse/required_columns.py -> build/lib/gtfparse copying gtfparse/attribute_parsing.py -> build/lib/gtfparse copying gtfparse/parsing_error.py -> build/lib/gtfparse copying gtfparse/read_gtf.py -> build/lib/gtfparse copying gtfparse/create_missing_features.py -> build/lib/gtfparse copying gtfparse/__init__.py -> build/lib/gtfparse SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py37-gtfparse-1.2.1 depends on package: py37-numpy>=1.16,1<1.20,1 - found ===> py37-gtfparse-1.2.1 depends on package: py37-pandas>=0.15 - found ===> py37-gtfparse-1.2.1 depends on package: py37-setuptools>0 - found ===> py37-gtfparse-1.2.1 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py37-gtfparse-1.2.1 ===> py37-gtfparse-1.2.1 depends on package: py37-numpy>=1.16,1<1.20,1 - found ===> py37-gtfparse-1.2.1 depends on package: py37-pandas>=0.15 - found ===> py37-gtfparse-1.2.1 depends on package: py37-setuptools>0 - found ===> py37-gtfparse-1.2.1 depends on file: /usr/local/bin/python3.7 - found ===> Generating temporary packing list running install running build running build_py running install_lib creating /construction/biology/py-gtfparse/stage/usr/local/lib/python3.7 creating /construction/biology/py-gtfparse/stage/usr/local/lib/python3.7/site-packages creating /construction/biology/py-gtfparse/stage/usr/local/lib/python3.7/site-packages/gtfparse copying build/lib/gtfparse/required_columns.py -> /construction/biology/py-gtfparse/stage/usr/local/lib/python3.7/site-packages/gtfparse copying build/lib/gtfparse/attribute_parsing.py -> /construction/biology/py-gtfparse/stage/usr/local/lib/python3.7/site-packages/gtfparse copying build/lib/gtfparse/parsing_error.py -> /construction/biology/py-gtfparse/stage/usr/local/lib/python3.7/site-packages/gtfparse copying build/lib/gtfparse/read_gtf.py -> /construction/biology/py-gtfparse/stage/usr/local/lib/python3.7/site-packages/gtfparse copying build/lib/gtfparse/create_missing_features.py -> /construction/biology/py-gtfparse/stage/usr/local/lib/python3.7/site-packages/gtfparse copying build/lib/gtfparse/__init__.py -> /construction/biology/py-gtfparse/stage/usr/local/lib/python3.7/site-packages/gtfparse byte-compiling /construction/biology/py-gtfparse/stage/usr/local/lib/python3.7/site-packages/gtfparse/required_columns.py to required_columns.cpython-37.pyc byte-compiling /construction/biology/py-gtfparse/stage/usr/local/lib/python3.7/site-packages/gtfparse/attribute_parsing.py to attribute_parsing.cpython-37.pyc byte-compiling /construction/biology/py-gtfparse/stage/usr/local/lib/python3.7/site-packages/gtfparse/parsing_error.py to parsing_error.cpython-37.pyc byte-compiling /construction/biology/py-gtfparse/stage/usr/local/lib/python3.7/site-packages/gtfparse/read_gtf.py to read_gtf.cpython-37.pyc byte-compiling /construction/biology/py-gtfparse/stage/usr/local/lib/python3.7/site-packages/gtfparse/create_missing_features.py to create_missing_features.cpython-37.pyc byte-compiling /construction/biology/py-gtfparse/stage/usr/local/lib/python3.7/site-packages/gtfparse/__init__.py to __init__.cpython-37.pyc writing byte-compilation script '/tmp/tmpuxot7wht.py' /usr/local/bin/python3.7 /tmp/tmpuxot7wht.py removing /tmp/tmpuxot7wht.py running install_egg_info running egg_info writing gtfparse.egg-info/PKG-INFO writing dependency_links to gtfparse.egg-info/dependency_links.txt writing requirements to gtfparse.egg-info/requires.txt writing top-level names to gtfparse.egg-info/top_level.txt reading manifest file 'gtfparse.egg-info/SOURCES.txt' writing manifest file 'gtfparse.egg-info/SOURCES.txt' Copying gtfparse.egg-info to /construction/biology/py-gtfparse/stage/usr/local/lib/python3.7/site-packages/gtfparse-1.2.1-py3.7.egg-info running install_scripts writing list of installed files to '/construction/biology/py-gtfparse/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py37-gtfparse-1.2.1 file sizes/checksums [23]: 0% file sizes/checksums [23]: 100% packing files [23]: 0% packing files [23]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:00 TOTAL TIME 00:00:54