------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/libffi-3.2.1_3.txz Installing /packages/All/expat-2.2.8.txz Installing /packages/All/ncurses-6.1.20190525.txz Installing /packages/All/readline-8.0.4.txz Installing /packages/All/gettext-runtime-0.20.2.txz Installing /packages/All/openssl-1.1.1g,1.txz Installing /packages/All/python37-3.7.7_1.txz ===== Message from python37-3.7.7_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 Installing /packages/All/py37-setuptools-44.0.0.txz Installing /packages/All/metis-5.1.0_8.txz Installing /packages/All/tbb-2020.2.txz Installing /packages/All/gmp-6.2.0.txz Installing /packages/All/mpfr-4.0.2.txz Installing /packages/All/mpc-1.1.0_2.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/binutils-2.33.1_2,1.txz Installing /packages/All/gcc8-8.4.0.txz ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.9_2,1.txz Installing /packages/All/suitesparse-5.7.2_1.txz Installing /packages/All/py37-numpy-1.16.6,1.txz Installing /packages/All/py37-six-1.14.0.txz Installing /packages/All/py37-dateutil-2.8.1.txz Installing /packages/All/py37-pytz-2020.1,1.txz Installing /packages/All/sqlite3-3.32.2,1.txz Installing /packages/All/py37-sqlite3-3.7.7_7.txz Installing /packages/All/py37-bottleneck-1.3.2.txz Installing /packages/All/py37-numexpr-2.7.1.txz Installing /packages/All/py37-pandas-0.24.2_1,1.txz ===== Message from py37-pandas-0.24.2_1,1: -- Install math/py-statsmodels to enable parts of pandas.stats. Install devel/py-xarray to enable the to_xarray() function. UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:31 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py37-gtfparse-1.2.0_2 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py37-gtfparse-1.2.0_2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-gtfparse-1.2.0_2 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py37-gtfparse-1.2.0_2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-gtfparse-1.2.0_2 for building => SHA256 Checksum OK for gtfparse-1.2.0.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py37-gtfparse-1.2.0_2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-gtfparse-1.2.0_2 for building ===> Extracting for py37-gtfparse-1.2.0_2 => SHA256 Checksum OK for gtfparse-1.2.0.tar.gz. Extracted Memory Use: 0.10M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py37-gtfparse-1.2.0_2 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py37-gtfparse-1.2.0_2 depends on package: py37-setuptools>0 - found ===> py37-gtfparse-1.2.0_2 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py37-gtfparse-1.2.0_2 depends on package: py37-setuptools>0 - found ===> py37-gtfparse-1.2.0_2 depends on file: /usr/local/bin/python3.7 - found ===> Configuring for py37-gtfparse-1.2.0_2 No module named 'pypandoc' Failed to convert README.md from Markdown to reStructuredText running config SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py37-gtfparse-1.2.0_2 No module named 'pypandoc' Failed to convert README.md from Markdown to reStructuredText running build running build_py creating build creating build/lib creating build/lib/gtfparse copying gtfparse/create_missing_features.py -> build/lib/gtfparse copying gtfparse/required_columns.py -> build/lib/gtfparse copying gtfparse/attribute_parsing.py -> build/lib/gtfparse copying gtfparse/parsing_error.py -> build/lib/gtfparse copying gtfparse/__init__.py -> build/lib/gtfparse copying gtfparse/read_gtf.py -> build/lib/gtfparse SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py37-gtfparse-1.2.0_2 depends on package: py37-numpy>=1.16,1<1.19,1 - found ===> py37-gtfparse-1.2.0_2 depends on package: py37-pandas>=0.15 - found ===> py37-gtfparse-1.2.0_2 depends on package: py37-setuptools>0 - found ===> py37-gtfparse-1.2.0_2 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py37-gtfparse-1.2.0_2 ===> py37-gtfparse-1.2.0_2 depends on package: py37-numpy>=1.16,1<1.19,1 - found ===> py37-gtfparse-1.2.0_2 depends on package: py37-pandas>=0.15 - found ===> py37-gtfparse-1.2.0_2 depends on package: py37-setuptools>0 - found ===> py37-gtfparse-1.2.0_2 depends on file: /usr/local/bin/python3.7 - found ===> Generating temporary packing list No module named 'pypandoc' Failed to convert README.md from Markdown to reStructuredText running install running build running build_py running install_lib creating /construction/biology/py-gtfparse/stage/usr/local/lib/python3.7 creating /construction/biology/py-gtfparse/stage/usr/local/lib/python3.7/site-packages creating /construction/biology/py-gtfparse/stage/usr/local/lib/python3.7/site-packages/gtfparse copying build/lib/gtfparse/attribute_parsing.py -> /construction/biology/py-gtfparse/stage/usr/local/lib/python3.7/site-packages/gtfparse copying build/lib/gtfparse/create_missing_features.py -> /construction/biology/py-gtfparse/stage/usr/local/lib/python3.7/site-packages/gtfparse copying build/lib/gtfparse/read_gtf.py -> /construction/biology/py-gtfparse/stage/usr/local/lib/python3.7/site-packages/gtfparse copying build/lib/gtfparse/__init__.py -> /construction/biology/py-gtfparse/stage/usr/local/lib/python3.7/site-packages/gtfparse copying build/lib/gtfparse/parsing_error.py -> /construction/biology/py-gtfparse/stage/usr/local/lib/python3.7/site-packages/gtfparse copying build/lib/gtfparse/required_columns.py -> /construction/biology/py-gtfparse/stage/usr/local/lib/python3.7/site-packages/gtfparse byte-compiling /construction/biology/py-gtfparse/stage/usr/local/lib/python3.7/site-packages/gtfparse/attribute_parsing.py to attribute_parsing.cpython-37.pyc byte-compiling /construction/biology/py-gtfparse/stage/usr/local/lib/python3.7/site-packages/gtfparse/create_missing_features.py to create_missing_features.cpython-37.pyc byte-compiling /construction/biology/py-gtfparse/stage/usr/local/lib/python3.7/site-packages/gtfparse/read_gtf.py to read_gtf.cpython-37.pyc byte-compiling /construction/biology/py-gtfparse/stage/usr/local/lib/python3.7/site-packages/gtfparse/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/biology/py-gtfparse/stage/usr/local/lib/python3.7/site-packages/gtfparse/parsing_error.py to parsing_error.cpython-37.pyc byte-compiling /construction/biology/py-gtfparse/stage/usr/local/lib/python3.7/site-packages/gtfparse/required_columns.py to required_columns.cpython-37.pyc writing byte-compilation script '/tmp/tmpft7_c9z3.py' /usr/local/bin/python3.7 /tmp/tmpft7_c9z3.py removing /tmp/tmpft7_c9z3.py running install_egg_info running egg_info writing gtfparse.egg-info/PKG-INFO writing dependency_links to gtfparse.egg-info/dependency_links.txt writing requirements to gtfparse.egg-info/requires.txt writing top-level names to gtfparse.egg-info/top_level.txt reading manifest file 'gtfparse.egg-info/SOURCES.txt' writing manifest file 'gtfparse.egg-info/SOURCES.txt' Copying gtfparse.egg-info to /construction/biology/py-gtfparse/stage/usr/local/lib/python3.7/site-packages/gtfparse-1.2.0-py3.7.egg-info running install_scripts writing list of installed files to '/construction/biology/py-gtfparse/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py37-gtfparse-1.2.0_2 file sizes/checksums [23]: 0% file sizes/checksums [23]: 100% packing files [23]: 0% packing files [23]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:00 TOTAL TIME 00:00:38