------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gmp-6.2.0.txz Installing /packages/All/mpfr-4.1.0.txz Installing /packages/All/metis-5.1.0_8.txz ===== Message from metis-5.1.0_8: -- ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Installing /packages/All/tbb-2020.3.txz Installing /packages/All/mpc-1.1.0_2.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/gettext-runtime-0.21.txz Installing /packages/All/binutils-2.33.1_3,1.txz Installing /packages/All/gcc8-8.4.0.txz ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.10,1.txz Installing /packages/All/suitesparse-5.8.1.txz Installing /packages/All/expat-2.2.8.txz Installing /packages/All/libffi-3.3_1.txz Installing /packages/All/ncurses-6.2.20200831.txz Installing /packages/All/readline-8.0.4.txz Installing /packages/All/openssl-1.1.1g,1.txz Installing /packages/All/python27-2.7.18_1.txz ===== Message from python27-2.7.18_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter Installing /packages/All/py27-setuptools-44.0.0.txz ===== Message from py27-setuptools-44.0.0: -- Only /usr/local/bin/easy_install-2.7 script has been installed since Python 2.7 is not the default Python version. -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-numpy-1.16.6,1.txz ===== Message from py27-numpy-1.16.6,1: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/libxml2-2.9.10.txz Installing /packages/All/libgpg-error-1.39.txz Installing /packages/All/libgcrypt-1.8.5.txz Installing /packages/All/libxslt-1.1.34_1.txz Installing /packages/All/py27-lxml-4.5.2.txz ===== Message from py27-lxml-4.5.2: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-six-1.15.0.txz ===== Message from py27-six-1.15.0: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/wayland-1.18.0.txz Installing /packages/All/pciids-20200819.txz Installing /packages/All/libpciaccess-0.16.txz Installing /packages/All/libdrm-2.4.101.txz Installing /packages/All/libpthread-stubs-0.4.txz Installing /packages/All/libXau-1.0.9.txz Installing /packages/All/xorgproto-2020.1.txz Installing /packages/All/libXdmcp-1.1.3.txz Installing /packages/All/libxcb-1.13.1.txz Installing /packages/All/libX11-1.6.12,1.txz Installing /packages/All/libXfixes-5.0.3_2.txz Installing /packages/All/libXdamage-1.1.5.txz Installing /packages/All/libXext-1.3.4,1.txz Installing /packages/All/libxshmfence-1.3.txz Installing /packages/All/libXxf86vm-1.1.4_3.txz Installing /packages/All/libXrender-0.9.10_2.txz Installing /packages/All/libXrandr-1.5.2.txz Installing /packages/All/mesa-libs-19.0.8_2.txz Installing /packages/All/double-conversion-3.1.5.19.txz Installing /packages/All/icu-67.1,1.txz Installing /packages/All/pcre2-10.35.txz Installing /packages/All/liblz4-1.9.2_1,1.txz Installing /packages/All/zstd-1.4.5_1.txz Installing /packages/All/pcre-8.44.txz Installing /packages/All/libiconv-1.16.txz Installing /packages/All/python37-3.7.9.txz ===== Message from python37-3.7.9: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 Installing /packages/All/glib-2.56.3_9,1.txz No schema files found: doing nothing. Installing /packages/All/qtchooser-66_3.txz ===== Message from qtchooser-66_3: -- qtchooser is a wrapper that allows selecting whether Qt4 or Qt5 binaries for qmake, moc and other tools will be run when invoking the binaries in $PATH. By default, the Qt5 versions are run. It is possible to change the behavior by setting the QT_SELECT environment variable to "qt4". See qtchooser(1) for more information. Installing /packages/All/qt5-core-5.15.0_2.txz Installing /packages/All/libICE-1.0.10,1.txz Installing /packages/All/libSM-1.2.3,1.txz Installing /packages/All/dbus-1.12.20.txz ===> Creating groups. Creating group 'messagebus' with gid '556'. ===> Creating users Creating user 'messagebus' with uid '556'. Installing /packages/All/libevdev-1.5.9.txz Installing /packages/All/freetype2-2.10.2.txz ===== Message from freetype2-2.10.2: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/site/index.html, if documentation was installed). Installing /packages/All/fontconfig-2.13.92_2,1.txz Running fc-cache to build fontconfig cache... Font directories: /usr/local/share/fonts /usr/local/lib/X11/fonts /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded Installing /packages/All/graphite2-1.3.14.txz Installing /packages/All/harfbuzz-2.7.2.txz Installing /packages/All/libudev-devd-0.4.2.txz Installing /packages/All/libmtdev-1.1.5_2.txz Installing /packages/All/py37-setuptools-44.0.0.txz Installing /packages/All/py37-evdev-0.8.1_1.txz Installing /packages/All/py37-six-1.15.0.txz Installing /packages/All/py37-pyudev-0.22.0.txz Installing /packages/All/libinput-1.12.6_1.txz Installing /packages/All/png-1.6.37.txz Installing /packages/All/xcb-util-0.4.0_2,1.txz Installing /packages/All/xcb-util-image-0.4.0_1.txz Installing /packages/All/xcb-util-keysyms-0.4.0_1.txz Installing /packages/All/xcb-util-renderutil-0.3.9_1.txz Installing /packages/All/xcb-util-wm-0.4.1_3.txz Installing /packages/All/xkeyboard-config-2.30.txz Installing /packages/All/libxkbcommon-0.10.0_2.txz ===== Message from libxkbcommon-0.10.0_2: -- If arrow keys don't work under X11 switch to legacy rules e.g., For sh/bash/ksh/zsh run and (optionally) add into ~/.profile: export XKB_DEFAULT_RULES=xorg For csh/tcsh run and (optionally) add into ~/.login: setenv XKB_DEFAULT_RULES xorg Installing /packages/All/jpeg-turbo-2.0.4.txz Installing /packages/All/qt5-dbus-5.15.0.txz Installing /packages/All/ca_root_nss-3.56.txz ===== Message from ca_root_nss-3.56: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem Installing /packages/All/qt5-network-5.15.0.txz Installing /packages/All/hicolor-icon-theme-0.17.txz Installing /packages/All/xprop-1.2.4.txz Installing /packages/All/libXt-1.2.0,1.txz Installing /packages/All/libXmu-1.1.3,1.txz Installing /packages/All/xset-1.2.4_3.txz Installing /packages/All/xdg-utils-1.1.3_1.txz Installing /packages/All/vulkan-headers-1.2.135.0.txz Installing /packages/All/encodings-1.0.5,1.txz Installing /packages/All/libfontenc-1.1.4.txz Installing /packages/All/mkfontscale-1.2.1.txz Installing /packages/All/font-bh-ttf-1.0.3_4.txz Installing /packages/All/font-misc-meltho-1.0.3_4.txz Installing /packages/All/font-misc-ethiopic-1.0.4.txz Installing /packages/All/dejavu-2.37_1.txz ===== Message from dejavu-2.37_1: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Installing /packages/All/xorg-fonts-truetype-7.7_1.txz Installing /packages/All/libXi-1.7.10,1.txz Installing /packages/All/qt5-gui-5.15.0.txz Installing /packages/All/libdaemon-0.14_1.txz Installing /packages/All/dbus-glib-0.110.txz Installing /packages/All/gdbm-1.18.1_1.txz Installing /packages/All/gobject-introspection-1.56.1_1,1.txz Installing /packages/All/gnome_subr-1.0.txz Installing /packages/All/avahi-app-0.7_3.txz ===> Creating groups. Creating group 'avahi' with gid '558'. ===> Creating users Creating user 'avahi' with uid '558'. Installing /packages/All/nettle-3.6.txz Installing /packages/All/libtasn1-4.16.0.txz Installing /packages/All/libunistring-0.9.10_1.txz Installing /packages/All/libidn2-2.3.0_1.txz Installing /packages/All/bash-5.0.18_3.txz Installing /packages/All/bash-completion-2.11,2.txz ===== Message from bash-completion-2.11,2: -- To enable the bash completion library, add the following to your .bashrc file: [[ $PS1 && -f /usr/local/share/bash-completion/bash_completion.sh ]] && \ source /usr/local/share/bash-completion/bash_completion.sh See /usr/local/share/doc/bash-completion/README.md for more information. Installing /packages/All/p11-kit-0.23.21.txz Installing /packages/All/tpm-emulator-0.7.4_2.txz ===> Creating groups. Creating group '_tss' with gid '601'. ===> Creating users Creating user '_tss' with uid '601'. Installing /packages/All/trousers-0.3.14_3.txz ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. ===== Message from trousers-0.3.14_3: -- To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account Installing /packages/All/gnutls-3.6.15.txz Installing /packages/All/libpaper-1.1.24.4.txz Installing /packages/All/cups-2.3.3_1.txz ===> Creating groups. Creating group 'cups' with gid '193'. ===> Creating users Creating user 'cups' with uid '193'. Installing /packages/All/qt5-widgets-5.15.0.txz Installing /packages/All/qt5-printsupport-5.15.0.txz Installing /packages/All/qscintilla2-qt5-2.11.4.txz Installing /packages/All/py27-enum34-1.1.6.txz ===== Message from py27-enum34-1.1.6: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-sip-4.19.21,1.txz ===== Message from py27-sip-4.19.21,1: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-qt5-core-5.13.1_1.txz ===== Message from py27-qt5-core-5.13.1_1: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/libGLU-9.0.1.txz Installing /packages/All/freeglut-3.0.0_2.txz ===== Message from freeglut-3.0.0_2: -- Joystick support is untested and it is unknown if it works. Do not hesitate to contact x11@FreeBSD.org if this causes issues. Installing /packages/All/jasper-2.0.16_1.txz Installing /packages/All/jbigkit-2.1_1.txz Installing /packages/All/tiff-4.1.0.txz Installing /packages/All/lcms-1.19_6,1.txz Installing /packages/All/libmng-1.0.10_3.txz Installing /packages/All/giflib-5.2.1.txz Installing /packages/All/webp-1.1.0.txz Installing /packages/All/qt5-imageformats-5.15.0.txz Installing /packages/All/py27-qt5-gui-5.13.1_1.txz ===== Message from py27-qt5-gui-5.13.1_1: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/qt5-opengl-5.15.0.txz Installing /packages/All/py27-qt5-widgets-5.13.1_1.txz ===== Message from py27-qt5-widgets-5.13.1_1: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-qt5-opengl-5.13.1_1.txz ===== Message from py27-qt5-opengl-5.13.1_1: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-qt5-printsupport-5.13.1_1.txz ===== Message from py27-qt5-printsupport-5.13.1_1: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/qt5-svg-5.15.0.txz Installing /packages/All/py27-qt5-svg-5.13.1_1.txz ===== Message from py27-qt5-svg-5.13.1_1: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:02:01 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py27-ete3-3.1.2 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. ===> py27-ete3-3.1.2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-ete3-3.1.2 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. ===> py27-ete3-3.1.2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-ete3-3.1.2 for building => SHA256 Checksum OK for ete3-3.1.2.tar.gz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. ===> py27-ete3-3.1.2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-ete3-3.1.2 for building ===> Extracting for py27-ete3-3.1.2 => SHA256 Checksum OK for ete3-3.1.2.tar.gz. Extracted Memory Use: 12.97M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py27-ete3-3.1.2 SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py27-ete3-3.1.2 depends on package: py27-numpy>=1.16,1<1.20,1 - found ===> py27-ete3-3.1.2 depends on package: py27-lxml>0 - found ===> py27-ete3-3.1.2 depends on package: py27-six>0 - found ===> py27-ete3-3.1.2 depends on package: py27-setuptools>0 - found ===> py27-ete3-3.1.2 depends on file: /usr/local/bin/python2.7 - found ===> py27-ete3-3.1.2 depends on package: py27-qt5-core>=5.13.1 - found ===> py27-ete3-3.1.2 depends on package: py27-qt5-gui>=5.13.1 - found ===> py27-ete3-3.1.2 depends on package: py27-qt5-opengl>=5.13.1 - found ===> py27-ete3-3.1.2 depends on package: py27-qt5-printsupport>=5.13.1 - found ===> py27-ete3-3.1.2 depends on package: py27-qt5-svg>=5.13.1 - found ===> py27-ete3-3.1.2 depends on package: py27-qt5-widgets>=5.13.1 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py27-ete3-3.1.2 depends on package: py27-numpy>=1.16,1<1.20,1 - found ===> py27-ete3-3.1.2 depends on package: py27-lxml>0 - found ===> py27-ete3-3.1.2 depends on package: py27-six>0 - found ===> py27-ete3-3.1.2 depends on package: py27-setuptools>0 - found ===> py27-ete3-3.1.2 depends on file: /usr/local/bin/python2.7 - found ===> py27-ete3-3.1.2 depends on package: py27-qt5-core>=5.13.1 - found ===> py27-ete3-3.1.2 depends on package: py27-qt5-gui>=5.13.1 - found ===> py27-ete3-3.1.2 depends on package: py27-qt5-opengl>=5.13.1 - found ===> py27-ete3-3.1.2 depends on package: py27-qt5-printsupport>=5.13.1 - found ===> py27-ete3-3.1.2 depends on package: py27-qt5-svg>=5.13.1 - found ===> py27-ete3-3.1.2 depends on package: py27-qt5-widgets>=5.13.1 - found ===> Configuring for py27-ete3-3.1.2 Installing ETE (3.1.2) running config  - Done! -  SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py27-ete3-3.1.2 Installing ETE (3.1.2) running build running build_py creating build creating build/lib creating build/lib/ete3 copying ete3/utils.py -> build/lib/ete3 copying ete3/__init__.py -> build/lib/ete3 copying ete3/version.py -> build/lib/ete3 copying ete3/citation.py -> build/lib/ete3 copying ete3/_ph.py -> build/lib/ete3 running egg_info writing ete3.egg-info/PKG-INFO writing top-level names to ete3.egg-info/top_level.txt writing dependency_links to ete3.egg-info/dependency_links.txt writing entry points to ete3.egg-info/entry_points.txt reading manifest file 'ete3.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'doc' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '~*' found anywhere in distribution warning: no previously-included files matching '*~' found anywhere in distribution warning: manifest_maker: MANIFEST.in, line 17: 'global-exclude' expects ... warning: no previously-included files matching '*.gz' found anywhere in distribution writing manifest file 'ete3.egg-info/SOURCES.txt' creating build/lib/ete3/clustering copying ete3/clustering/__init__.py -> build/lib/ete3/clustering copying ete3/clustering/clustertree.py -> build/lib/ete3/clustering copying ete3/clustering/clustvalidation.py -> build/lib/ete3/clustering creating build/lib/ete3/coretype copying ete3/coretype/__init__.py -> build/lib/ete3/coretype copying ete3/coretype/arraytable.py -> build/lib/ete3/coretype copying ete3/coretype/seqgroup.py -> build/lib/ete3/coretype copying ete3/coretype/tree.py -> build/lib/ete3/coretype creating build/lib/ete3/evol copying ete3/evol/__init__.py -> build/lib/ete3/evol copying ete3/evol/control.py -> build/lib/ete3/evol copying ete3/evol/evoltree.py -> build/lib/ete3/evol copying ete3/evol/model.py -> build/lib/ete3/evol copying ete3/evol/utils.py -> build/lib/ete3/evol creating build/lib/ete3/evol/parser copying ete3/evol/parser/__init__.py -> build/lib/ete3/evol/parser copying ete3/evol/parser/codemlparser.py -> build/lib/ete3/evol/parser copying ete3/evol/parser/slrparser.py -> build/lib/ete3/evol/parser creating build/lib/ete3/ncbi_taxonomy copying ete3/ncbi_taxonomy/__init__.py -> build/lib/ete3/ncbi_taxonomy copying ete3/ncbi_taxonomy/ncbiquery.py -> build/lib/ete3/ncbi_taxonomy creating build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein copying ete3/ncbi_taxonomy/SQLite-Levenshtein/.gitignore -> build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein copying ete3/ncbi_taxonomy/SQLite-Levenshtein/EXAMPLE -> build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein copying ete3/ncbi_taxonomy/SQLite-Levenshtein/Makefile -> build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein copying ete3/ncbi_taxonomy/SQLite-Levenshtein/README -> build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein creating build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/src copying ete3/ncbi_taxonomy/SQLite-Levenshtein/src/levenshtein.c -> build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/src creating build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/tests copying ete3/ncbi_taxonomy/SQLite-Levenshtein/tests/README -> build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/tests copying ete3/ncbi_taxonomy/SQLite-Levenshtein/tests/levenshtein-test.sql -> build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/tests creating build/lib/ete3/nexml copying ete3/nexml/__init__.py -> build/lib/ete3/nexml copying ete3/nexml/_nexml.py -> build/lib/ete3/nexml copying ete3/nexml/_nexml_tree.py -> build/lib/ete3/nexml creating build/lib/ete3/orthoxml copying ete3/orthoxml/__init__.py -> build/lib/ete3/orthoxml copying ete3/orthoxml/_orthoxml.py -> build/lib/ete3/orthoxml creating build/lib/ete3/parser copying ete3/parser/__init__.py -> build/lib/ete3/parser copying ete3/parser/fasta.py -> build/lib/ete3/parser copying ete3/parser/newick.py -> build/lib/ete3/parser copying ete3/parser/paml.py -> build/lib/ete3/parser copying ete3/parser/phylip.py -> build/lib/ete3/parser copying ete3/parser/text_arraytable.py -> build/lib/ete3/parser creating build/lib/ete3/phylo copying ete3/phylo/__init__.py -> build/lib/ete3/phylo copying ete3/phylo/evolevents.py -> build/lib/ete3/phylo copying ete3/phylo/phylotree.py -> build/lib/ete3/phylo copying ete3/phylo/reconciliation.py -> build/lib/ete3/phylo copying ete3/phylo/spoverlap.py -> build/lib/ete3/phylo creating build/lib/ete3/phylomedb copying ete3/phylomedb/__init__.py -> build/lib/ete3/phylomedb copying ete3/phylomedb/phylomeDB.py -> build/lib/ete3/phylomedb copying ete3/phylomedb/phylomeDB3.py -> build/lib/ete3/phylomedb creating build/lib/ete3/phyloxml copying ete3/phyloxml/__init__.py -> build/lib/ete3/phyloxml copying ete3/phyloxml/_phyloxml.py -> build/lib/ete3/phyloxml copying ete3/phyloxml/_phyloxml_tree.py -> build/lib/ete3/phyloxml creating build/lib/ete3/test copying ete3/test/__init__.py -> build/lib/ete3/test copying ete3/test/datasets.py -> build/lib/ete3/test copying ete3/test/test_all.py -> build/lib/ete3/test copying ete3/test/test_api.py -> build/lib/ete3/test copying ete3/test/test_arraytable.py -> build/lib/ete3/test copying ete3/test/test_circle_label.py -> build/lib/ete3/test copying ete3/test/test_clustertree.py -> build/lib/ete3/test copying ete3/test/test_ete_evol.py -> build/lib/ete3/test copying ete3/test/test_evol.py -> build/lib/ete3/test copying ete3/test/test_interop.py -> build/lib/ete3/test copying ete3/test/test_ncbiquery.py -> build/lib/ete3/test copying ete3/test/test_phylotree.py -> build/lib/ete3/test copying ete3/test/test_seqgroup.py -> build/lib/ete3/test copying ete3/test/test_tree.py -> build/lib/ete3/test copying ete3/test/test_xml_parsers.py -> build/lib/ete3/test creating build/lib/ete3/test/ete_evol_data creating build/lib/ete3/test/ete_evol_data/CladeModelCD copying ete3/test/ete_evol_data/CladeModelCD/ECP_EDN_15.fasta -> build/lib/ete3/test/ete_evol_data/CladeModelCD copying ete3/test/ete_evol_data/CladeModelCD/ECP_EDN_15.nw -> build/lib/ete3/test/ete_evol_data/CladeModelCD creating build/lib/ete3/test/ete_evol_data/L_example copying ete3/test/ete_evol_data/L_example/alignment_L_measuring_evol.fasta -> build/lib/ete3/test/ete_evol_data/L_example copying ete3/test/ete_evol_data/L_example/measuring_L_tree.nw -> build/lib/ete3/test/ete_evol_data/L_example creating build/lib/ete3/test/ete_evol_data/S_example copying ete3/test/ete_evol_data/S_example/ali.fasta -> build/lib/ete3/test/ete_evol_data/S_example copying ete3/test/ete_evol_data/S_example/tree.nw -> build/lib/ete3/test/ete_evol_data/S_example creating build/lib/ete3/test/ete_evol_data/S_example/paml creating build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/2NG.dN -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/2NG.dS -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/2NG.t -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/4fold.nuc -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/algn -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/lnf -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/out -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/rst -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/rst1 -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/rub -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/tmp.ctl -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/tree -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 creating build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/2NG.dN -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/2NG.dS -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/2NG.t -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/4fold.nuc -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/algn -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/lnf -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/out -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/rst -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/rst1 -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/rub -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/tmp.ctl -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/tree -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 creating build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/2NG.dN -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/2NG.dS -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/2NG.t -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/4fold.nuc -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/algn -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/lnf -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/out -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/rst -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/rst1 -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/rub -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/tmp.ctl -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/tree -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA creating build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/2NG.dN -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/2NG.dS -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/2NG.t -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/4fold.nuc -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/algn -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/lnf -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/out -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/rst -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/rst1 -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/rub -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/tmp.ctl -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/tree -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 creating build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/2NG.dN -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/2NG.dS -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/2NG.t -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/4fold.nuc -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/algn -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/lnf -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/out -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/rst -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/rst1 -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/rub -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/tmp.ctl -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/tree -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb creating build/lib/ete3/test/ete_evol_data/XS_example copying ete3/test/ete_evol_data/XS_example/ali.fasta -> build/lib/ete3/test/ete_evol_data/XS_example copying ete3/test/ete_evol_data/XS_example/tree.nw -> build/lib/ete3/test/ete_evol_data/XS_example creating build/lib/ete3/test/ete_evol_data/protamine creating build/lib/ete3/test/ete_evol_data/protamine/PRM1 copying ete3/test/ete_evol_data/protamine/PRM1/alignments.fasta_ali -> build/lib/ete3/test/ete_evol_data/protamine/PRM1 copying ete3/test/ete_evol_data/protamine/PRM1/tree.nw -> build/lib/ete3/test/ete_evol_data/protamine/PRM1 creating build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml creating build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/2NG.dN -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/2NG.dS -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/2NG.t -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/4fold.nuc -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/algn -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/lnf -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/out -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/rst -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/rst1 -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/rub -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/tmp.ctl -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/tree -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 creating build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/2NG.dN -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/2NG.dS -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/2NG.t -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/4fold.nuc -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/M1.out -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/algn -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/lnf -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/rst -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/rst1 -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/rub -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/tmp.ctl -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/tree -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 creating build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/2NG.dN -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/2NG.dS -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/2NG.t -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/4fold.nuc -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/M2.out -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/algn -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/lnf -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/rst -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/rst1 -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/rub -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/tmp.ctl -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/tree -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 creating build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/2NG.dN -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/2NG.dS -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/2NG.t -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/4fold.nuc -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/M7.out -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/algn -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/lnf -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/rst -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/rst1 -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/rub -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/tmp.ctl -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/tree -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 creating build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/2NG.dN -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/2NG.dS -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/2NG.t -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/4fold.nuc -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/M8.out -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/algn -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/lnf -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/rst -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/rst1 -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/rub -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/tmp.ctl -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/tree -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 creating build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/2NG.dN -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/2NG.dS -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/2NG.t -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/4fold.nuc -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/algn -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/fb.out -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/lnf -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/rst.fb -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/rst1 -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/rub -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/tmp.ctl -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/tree -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb creating build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/2NG.dN -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/2NG.dS -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/2NG.t -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/4fold.nuc -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/algn -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/fb.out -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/lnf -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/rst.fb -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/rst1 -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/rub -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/slr.ctl -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/tmp.ctl -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/tree -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/tree.slr -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr creating build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/NUP62.aa.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/NUP62.nt.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/P53.alg.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/P53.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/__init__.py -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/__main__.py -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/cog_seqs.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/cog_seqs.nt.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/fake_alg1.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/fake_alg1.nt.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/fake_alg2.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/fake_alg2.nt.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/fake_alg3.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/fake_alg3.nt.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/fake_cogs.tsv -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/test_genetree.py -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/test_manual_alg.py -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/test_modeltest.py -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/test_sptree.py -> build/lib/ete3/test/test_ete_build creating build/lib/ete3/test/test_issue258 copying ete3/test/test_issue258/issue258.py -> build/lib/ete3/test/test_issue258 creating build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/__init__.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/barchart_and_piechart_faces.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/barcharts.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/bubble_map.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/bubble_map.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/chimp.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/dog.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/face_grid.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/face_positions.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/face_rotation.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/fish.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/float_piechart.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/floating_piecharts.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/fly.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/human.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/img_faces.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/img_faces.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/item_faces.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/item_faces.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/motifs.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/mouse.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/new_seq_face.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/node_background.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/node_background.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/node_style.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/node_style.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/phylotree_visualization.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/random_draw.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/rotated_faces.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/seq_motif_faces.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/seq_motif_faces.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/seqmotif.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/test_all_treeview.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/tree_faces.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/tree_faces.py -> build/lib/ete3/test/test_treeview creating build/lib/ete3/tools copying ete3/tools/__init__.py -> build/lib/ete3/tools copying ete3/tools/common.py -> build/lib/ete3/tools copying ete3/tools/ete.py -> build/lib/ete3/tools copying ete3/tools/ete_annotate.py -> build/lib/ete3/tools copying ete3/tools/ete_build.cfg -> build/lib/ete3/tools copying ete3/tools/ete_build.py -> build/lib/ete3/tools copying ete3/tools/ete_compare.py -> build/lib/ete3/tools copying ete3/tools/ete_evol.py -> build/lib/ete3/tools copying ete3/tools/ete_expand.py -> build/lib/ete3/tools copying ete3/tools/ete_extract.py -> build/lib/ete3/tools copying ete3/tools/ete_generate.py -> build/lib/ete3/tools copying ete3/tools/ete_maptrees.py -> build/lib/ete3/tools copying ete3/tools/ete_mod.py -> build/lib/ete3/tools copying ete3/tools/ete_ncbiquery.py -> build/lib/ete3/tools copying ete3/tools/ete_split.py -> build/lib/ete3/tools copying ete3/tools/ete_upgrade_tools.py -> build/lib/ete3/tools copying ete3/tools/ete_view.py -> build/lib/ete3/tools copying ete3/tools/utils.py -> build/lib/ete3/tools creating build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/__init__.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/apps.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/configcheck.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/configobj.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/curses_gui.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/db.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/errors.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/getch.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/interface.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/logger.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/master_job.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/master_task.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/ordereddict.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/scheduler.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/seqio.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/sge.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/utils.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/validate.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/visualize.py -> build/lib/ete3/tools/ete_build_lib creating build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/__init__.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/clustalo.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/cog_creator.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/cog_selector.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/concat_alg.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/dialigntx.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/dummyalg.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/dummytree.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/fasttree.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/iqtree.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/jmodeltest.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/mafft.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/merger.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/meta_aligner.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/msf.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/muscle.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/phyml.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/pmodeltest.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/prottest.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/prottest2.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/raxml.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/tcoffee.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/trimal.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/uhire.py -> build/lib/ete3/tools/ete_build_lib/task creating build/lib/ete3/tools/ete_build_lib/workflow copying ete3/tools/ete_build_lib/workflow/__init__.py -> build/lib/ete3/tools/ete_build_lib/workflow copying ete3/tools/ete_build_lib/workflow/common.py -> build/lib/ete3/tools/ete_build_lib/workflow copying ete3/tools/ete_build_lib/workflow/genetree.py -> build/lib/ete3/tools/ete_build_lib/workflow copying ete3/tools/ete_build_lib/workflow/supermatrix.py -> build/lib/ete3/tools/ete_build_lib/workflow creating build/lib/ete3/treeview copying ete3/treeview/__init__.py -> build/lib/ete3/treeview copying ete3/treeview/_about.py -> build/lib/ete3/treeview copying ete3/treeview/_mainwindow.py -> build/lib/ete3/treeview copying ete3/treeview/_open_newick.py -> build/lib/ete3/treeview copying ete3/treeview/_search_dialog.py -> build/lib/ete3/treeview copying ete3/treeview/_show_codeml.py -> build/lib/ete3/treeview copying ete3/treeview/_show_newick.py -> build/lib/ete3/treeview copying ete3/treeview/about.ui -> build/lib/ete3/treeview copying ete3/treeview/clean_search.png -> build/lib/ete3/treeview copying ete3/treeview/drawer.py -> build/lib/ete3/treeview copying ete3/treeview/ete_icon.png -> build/lib/ete3/treeview copying ete3/treeview/ete_logo.png -> build/lib/ete3/treeview copying ete3/treeview/ete_qt4app.ui -> build/lib/ete3/treeview copying ete3/treeview/ete_resources.qrc -> build/lib/ete3/treeview copying ete3/treeview/ete_resources_rc.py -> build/lib/ete3/treeview copying ete3/treeview/export_pdf.png -> build/lib/ete3/treeview copying ete3/treeview/faces.py -> build/lib/ete3/treeview copying ete3/treeview/fileopen.png -> build/lib/ete3/treeview copying ete3/treeview/filesave.png -> build/lib/ete3/treeview copying ete3/treeview/fit_region.png -> build/lib/ete3/treeview copying ete3/treeview/fit_tree.png -> build/lib/ete3/treeview copying ete3/treeview/force_topo.png -> build/lib/ete3/treeview copying ete3/treeview/image_properties.ui -> build/lib/ete3/treeview copying ete3/treeview/layouts.py -> build/lib/ete3/treeview copying ete3/treeview/main.py -> build/lib/ete3/treeview copying ete3/treeview/node_gui_actions.py -> build/lib/ete3/treeview copying ete3/treeview/open_newick.ui -> build/lib/ete3/treeview copying ete3/treeview/qt.py -> build/lib/ete3/treeview copying ete3/treeview/qt4_circular_render.py -> build/lib/ete3/treeview copying ete3/treeview/qt4_compile_resources.sh -> build/lib/ete3/treeview copying ete3/treeview/qt4_face_render.py -> build/lib/ete3/treeview copying ete3/treeview/qt4_gui.py -> build/lib/ete3/treeview copying ete3/treeview/qt4_rect_render.py -> build/lib/ete3/treeview copying ete3/treeview/qt4_render.py -> build/lib/ete3/treeview copying ete3/treeview/search.png -> build/lib/ete3/treeview copying ete3/treeview/search_dialog.ui -> build/lib/ete3/treeview copying ete3/treeview/show_dist.png -> build/lib/ete3/treeview copying ete3/treeview/show_names.png -> build/lib/ete3/treeview copying ete3/treeview/show_newick.png -> build/lib/ete3/treeview copying ete3/treeview/show_newick.ui -> build/lib/ete3/treeview copying ete3/treeview/show_support.png -> build/lib/ete3/treeview copying ete3/treeview/svg_colors.py -> build/lib/ete3/treeview copying ete3/treeview/templates.py -> build/lib/ete3/treeview copying ete3/treeview/x_expand.png -> build/lib/ete3/treeview copying ete3/treeview/x_reduce.png -> build/lib/ete3/treeview copying ete3/treeview/y_expand.png -> build/lib/ete3/treeview copying ete3/treeview/y_reduce.png -> build/lib/ete3/treeview copying ete3/treeview/zoom_in.png -> build/lib/ete3/treeview copying ete3/treeview/zoom_out.png -> build/lib/ete3/treeview creating build/lib/ete3/webplugin copying ete3/webplugin/__init__.py -> build/lib/ete3/webplugin copying ete3/webplugin/webapp.py -> build/lib/ete3/webplugin  - Done! -  SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py27-ete3-3.1.2 depends on package: py27-numpy>=1.16,1<1.20,1 - found ===> py27-ete3-3.1.2 depends on package: py27-lxml>0 - found ===> py27-ete3-3.1.2 depends on package: py27-six>0 - found ===> py27-ete3-3.1.2 depends on package: py27-setuptools>0 - found ===> py27-ete3-3.1.2 depends on file: /usr/local/bin/python2.7 - found ===> py27-ete3-3.1.2 depends on package: py27-qt5-core>=5.13.1 - found ===> py27-ete3-3.1.2 depends on package: py27-qt5-gui>=5.13.1 - found ===> py27-ete3-3.1.2 depends on package: py27-qt5-opengl>=5.13.1 - found ===> py27-ete3-3.1.2 depends on package: py27-qt5-printsupport>=5.13.1 - found ===> py27-ete3-3.1.2 depends on package: py27-qt5-svg>=5.13.1 - found ===> py27-ete3-3.1.2 depends on package: py27-qt5-widgets>=5.13.1 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py27-ete3-3.1.2 ===> py27-ete3-3.1.2 depends on package: py27-numpy>=1.16,1<1.20,1 - found ===> py27-ete3-3.1.2 depends on package: py27-lxml>0 - found ===> py27-ete3-3.1.2 depends on package: py27-six>0 - found ===> py27-ete3-3.1.2 depends on package: py27-setuptools>0 - found ===> py27-ete3-3.1.2 depends on file: /usr/local/bin/python2.7 - found ===> py27-ete3-3.1.2 depends on package: py27-qt5-core>=5.13.1 - found ===> py27-ete3-3.1.2 depends on package: py27-qt5-gui>=5.13.1 - found ===> py27-ete3-3.1.2 depends on package: py27-qt5-opengl>=5.13.1 - found ===> py27-ete3-3.1.2 depends on package: py27-qt5-printsupport>=5.13.1 - found ===> py27-ete3-3.1.2 depends on package: py27-qt5-svg>=5.13.1 - found ===> py27-ete3-3.1.2 depends on package: py27-qt5-widgets>=5.13.1 - found ===> Generating temporary packing list Installing ETE (3.1.2) running install running build running build_py running egg_info writing ete3.egg-info/PKG-INFO writing top-level names to ete3.egg-info/top_level.txt writing dependency_links to ete3.egg-info/dependency_links.txt writing entry points to ete3.egg-info/entry_points.txt reading manifest file 'ete3.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'doc' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '~*' found anywhere in distribution warning: no previously-included files matching '*~' found anywhere in distribution warning: manifest_maker: MANIFEST.in, line 17: 'global-exclude' expects ... warning: no previously-included files matching '*.gz' found anywhere in distribution writing manifest file 'ete3.egg-info/SOURCES.txt' running install_lib creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7 creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3 creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/orthoxml copying build/lib/ete3/orthoxml/_orthoxml.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/orthoxml copying build/lib/ete3/orthoxml/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/orthoxml creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/ncbi_taxonomy creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein/tests copying build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/tests/levenshtein-test.sql -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein/tests copying build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/tests/README -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein/tests copying build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/EXAMPLE -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein copying build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/.gitignore -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein/src copying build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/src/levenshtein.c -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein/src copying build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/README -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein copying build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/Makefile -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein copying build/lib/ete3/ncbi_taxonomy/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/ncbi_taxonomy copying build/lib/ete3/ncbi_taxonomy/ncbiquery.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/ncbi_taxonomy creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/clustering copying build/lib/ete3/clustering/clustvalidation.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/clustering copying build/lib/ete3/clustering/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/clustering copying build/lib/ete3/clustering/clustertree.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/clustering creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/phyloxml copying build/lib/ete3/phyloxml/_phyloxml.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/phyloxml copying build/lib/ete3/phyloxml/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/phyloxml copying build/lib/ete3/phyloxml/_phyloxml_tree.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/phyloxml copying build/lib/ete3/_ph.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3 creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/nexml copying build/lib/ete3/nexml/_nexml.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/nexml copying build/lib/ete3/nexml/_nexml_tree.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/nexml copying build/lib/ete3/nexml/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/nexml copying build/lib/ete3/utils.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3 copying build/lib/ete3/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3 creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/parser copying build/lib/ete3/parser/fasta.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/parser copying build/lib/ete3/parser/newick.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/parser copying build/lib/ete3/parser/phylip.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/parser copying build/lib/ete3/parser/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/parser copying build/lib/ete3/parser/text_arraytable.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/parser copying build/lib/ete3/parser/paml.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/parser copying build/lib/ete3/version.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3 creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/webplugin copying build/lib/ete3/webplugin/webapp.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/webplugin copying build/lib/ete3/webplugin/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/webplugin creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/phylo copying build/lib/ete3/phylo/evolevents.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/phylo copying build/lib/ete3/phylo/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/phylo copying build/lib/ete3/phylo/phylotree.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/phylo copying build/lib/ete3/phylo/reconciliation.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/phylo copying build/lib/ete3/phylo/spoverlap.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/phylo creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test copying build/lib/ete3/test/datasets.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test copying build/lib/ete3/test/test_api.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test copying build/lib/ete3/test/test_phylotree.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test copying build/lib/ete3/test/test_seqgroup.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test copying build/lib/ete3/test/test_clustertree.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test copying build/lib/ete3/test/test_all.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/fake_alg2.nt.fa -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/fake_alg3.fa -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/__main__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/fake_alg1.fa -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/NUP62.nt.fa -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/test_sptree.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/fake_cogs.tsv -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/P53.fa -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/fake_alg2.fa -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/cog_seqs.fa -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/test_modeltest.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/test_genetree.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/test_manual_alg.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/P53.alg.fa -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/fake_alg1.nt.fa -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/NUP62.aa.fa -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/fake_alg3.nt.fa -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/cog_seqs.nt.fa -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_evol.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test copying build/lib/ete3/test/test_arraytable.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test copying build/lib/ete3/test/test_circle_label.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/L_example copying build/lib/ete3/test/ete_evol_data/L_example/alignment_L_measuring_evol.fasta -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/L_example copying build/lib/ete3/test/ete_evol_data/L_example/measuring_L_tree.nw -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/L_example creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/tree.nw -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/alignments.fasta_ali -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1 creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/rub -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/2NG.t -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/M7.out -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/algn -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/2NG.dS -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/4fold.nuc -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/rst1 -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/tree -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/tmp.ctl -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/lnf -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/2NG.dN -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/rst -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/rst -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/2NG.dN -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/4fold.nuc -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/lnf -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/2NG.t -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/rub -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/rst1 -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/tree -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/M8.out -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/2NG.dS -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/algn -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/tmp.ctl -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/2NG.dS -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/rub -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/tree -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/lnf -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/2NG.dN -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/rst1 -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/2NG.t -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/algn -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/tmp.ctl -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/rst -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/4fold.nuc -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/M2.out -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/lnf -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/2NG.t -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/rst1 -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/tmp.ctl -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/2NG.dS -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/algn -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/2NG.dN -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/rub -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/tree -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/rst -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/M1.out -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/4fold.nuc -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/lnf -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/2NG.t -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/fb.out -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/tree -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/4fold.nuc -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/2NG.dS -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/tmp.ctl -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/rub -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/rst1 -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/algn -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/2NG.dN -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/rst.fb -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/rst -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/2NG.dN -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/algn -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/2NG.t -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/lnf -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/4fold.nuc -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/out -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/rub -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/tmp.ctl -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/2NG.dS -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/tree -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/rst1 -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/rub -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/algn -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/lnf -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/slr.ctl -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/rst1 -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/tmp.ctl -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/fb.out -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/4fold.nuc -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/tree -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/2NG.dS -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/2NG.dN -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/2NG.t -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/tree.slr -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/rst.fb -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/XS_example copying build/lib/ete3/test/ete_evol_data/XS_example/tree.nw -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/XS_example copying build/lib/ete3/test/ete_evol_data/XS_example/ali.fasta -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/XS_example creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/tmp.ctl -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/out -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/tree -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/rub -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/4fold.nuc -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/rst -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/rst1 -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/algn -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/2NG.dN -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/2NG.dS -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/lnf -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/2NG.t -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/2NG.dN -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/4fold.nuc -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/out -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/2NG.t -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/rst -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/rst1 -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/lnf -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/tree -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/tmp.ctl -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/2NG.dS -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/rub -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/algn -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/2NG.dS -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/2NG.t -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/tmp.ctl -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/rst -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/out -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/rst1 -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/lnf -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/tree -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/algn -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/2NG.dN -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/4fold.nuc -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/rub -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/rub -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/algn -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/rst -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/tree -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/rst1 -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/2NG.dN -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/out -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/tmp.ctl -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/2NG.dS -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/2NG.t -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/lnf -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/4fold.nuc -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/rub -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/out -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/2NG.dS -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/2NG.t -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/rst1 -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/rst -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/4fold.nuc -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/tmp.ctl -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/lnf -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/algn -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/2NG.dN -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/tree -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/tree.nw -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example copying build/lib/ete3/test/ete_evol_data/S_example/ali.fasta -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/S_example creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/CladeModelCD copying build/lib/ete3/test/ete_evol_data/CladeModelCD/ECP_EDN_15.nw -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/CladeModelCD copying build/lib/ete3/test/ete_evol_data/CladeModelCD/ECP_EDN_15.fasta -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/ete_evol_data/CladeModelCD copying build/lib/ete3/test/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test copying build/lib/ete3/test/test_ete_evol.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test copying build/lib/ete3/test/test_interop.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test copying build/lib/ete3/test/test_xml_parsers.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test copying build/lib/ete3/test/test_ncbiquery.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_issue258 copying build/lib/ete3/test/test_issue258/issue258.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_issue258 copying build/lib/ete3/test/test_tree.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/face_grid.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/test_all_treeview.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/rotated_faces.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/tree_faces.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/img_faces.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/node_background.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/chimp.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/dog.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/bubble_map.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/motifs.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/node_background.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/bubble_map.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/mouse.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/new_seq_face.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/node_style.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/seq_motif_faces.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/node_style.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/random_draw.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/float_piechart.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/seqmotif.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/barcharts.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/phylotree_visualization.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/human.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/fly.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/img_faces.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/tree_faces.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/floating_piecharts.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/fish.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/face_positions.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/face_rotation.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/item_faces.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/item_faces.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/seq_motif_faces.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/barchart_and_piechart_faces.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/show_dist.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/qt4_compile_resources.sh -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/zoom_in.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/_open_newick.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/svg_colors.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/about.ui -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/_mainwindow.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/qt4_rect_render.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/main.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/search.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/force_topo.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/ete_icon.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/show_newick.ui -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/templates.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/_about.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/export_pdf.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/show_names.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/qt4_circular_render.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/zoom_out.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/clean_search.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/_search_dialog.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/ete_logo.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/ete_resources.qrc -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/qt4_gui.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/open_newick.ui -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/fit_tree.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/qt.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/node_gui_actions.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/_show_codeml.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/x_expand.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/search_dialog.ui -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/fileopen.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/x_reduce.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/_show_newick.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/qt4_render.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/show_support.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/drawer.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/qt4_face_render.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/fit_region.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/filesave.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/ete_qt4app.ui -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/layouts.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/ete_resources_rc.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/y_reduce.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/faces.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/image_properties.ui -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/y_expand.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview copying build/lib/ete3/treeview/show_newick.png -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools copying build/lib/ete3/tools/ete_extract.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools copying build/lib/ete3/tools/ete_expand.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools copying build/lib/ete3/tools/ete_annotate.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools copying build/lib/ete3/tools/ete.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools copying build/lib/ete3/tools/ete_evol.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools copying build/lib/ete3/tools/ete_view.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools copying build/lib/ete3/tools/ete_maptrees.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools copying build/lib/ete3/tools/ete_mod.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools copying build/lib/ete3/tools/ete_build.cfg -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools copying build/lib/ete3/tools/ete_ncbiquery.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools copying build/lib/ete3/tools/ete_compare.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/visualize.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/curses_gui.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/configcheck.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/interface.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/db.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/workflow copying build/lib/ete3/tools/ete_build_lib/workflow/supermatrix.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/workflow copying build/lib/ete3/tools/ete_build_lib/workflow/genetree.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/workflow copying build/lib/ete3/tools/ete_build_lib/workflow/common.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/workflow copying build/lib/ete3/tools/ete_build_lib/workflow/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/workflow copying build/lib/ete3/tools/ete_build_lib/master_job.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/logger.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/configobj.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/validate.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/sge.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/errors.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/utils.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/scheduler.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/seqio.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/iqtree.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/msf.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/prottest2.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/fasttree.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/mafft.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/meta_aligner.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/dummytree.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/raxml.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/pmodeltest.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/concat_alg.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/cog_creator.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/merger.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/muscle.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/cog_selector.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/prottest.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/trimal.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/dialigntx.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/tcoffee.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/phyml.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/uhire.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/dummyalg.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/jmodeltest.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/clustalo.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/getch.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/ordereddict.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/apps.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/master_task.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_upgrade_tools.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools copying build/lib/ete3/tools/ete_build.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools copying build/lib/ete3/tools/common.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools copying build/lib/ete3/tools/ete_generate.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools copying build/lib/ete3/tools/utils.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools copying build/lib/ete3/tools/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools copying build/lib/ete3/tools/ete_split.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools copying build/lib/ete3/citation.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3 creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/phylomedb copying build/lib/ete3/phylomedb/phylomeDB3.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/phylomedb copying build/lib/ete3/phylomedb/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/phylomedb copying build/lib/ete3/phylomedb/phylomeDB.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/phylomedb creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/coretype copying build/lib/ete3/coretype/tree.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/coretype copying build/lib/ete3/coretype/seqgroup.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/coretype copying build/lib/ete3/coretype/arraytable.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/coretype copying build/lib/ete3/coretype/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/coretype creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/evol creating /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/evol/parser copying build/lib/ete3/evol/parser/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/evol/parser copying build/lib/ete3/evol/parser/codemlparser.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/evol/parser copying build/lib/ete3/evol/parser/slrparser.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/evol/parser copying build/lib/ete3/evol/model.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/evol copying build/lib/ete3/evol/evoltree.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/evol copying build/lib/ete3/evol/utils.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/evol copying build/lib/ete3/evol/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/evol copying build/lib/ete3/evol/control.py -> /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/evol byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/orthoxml/_orthoxml.py to _orthoxml.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/orthoxml/__init__.py to __init__.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/ncbi_taxonomy/__init__.py to __init__.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/ncbi_taxonomy/ncbiquery.py to ncbiquery.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/clustering/clustvalidation.py to clustvalidation.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/clustering/__init__.py to __init__.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/clustering/clustertree.py to clustertree.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/phyloxml/_phyloxml.py to _phyloxml.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/phyloxml/__init__.py to __init__.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/phyloxml/_phyloxml_tree.py to _phyloxml_tree.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/_ph.py to _ph.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/nexml/_nexml.py to _nexml.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/nexml/_nexml_tree.py to _nexml_tree.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/nexml/__init__.py to __init__.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/utils.py to utils.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/__init__.py to __init__.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/parser/fasta.py to fasta.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/parser/newick.py to newick.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/parser/phylip.py to phylip.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/parser/__init__.py to __init__.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/parser/text_arraytable.py to text_arraytable.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/parser/paml.py to paml.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/version.py to version.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/webplugin/webapp.py to webapp.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/webplugin/__init__.py to __init__.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/phylo/evolevents.py to evolevents.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/phylo/__init__.py to __init__.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/phylo/phylotree.py to phylotree.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/phylo/reconciliation.py to reconciliation.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/phylo/spoverlap.py to spoverlap.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/datasets.py to datasets.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_api.py to test_api.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_phylotree.py to test_phylotree.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_seqgroup.py to test_seqgroup.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_clustertree.py to test_clustertree.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_all.py to test_all.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_ete_build/__main__.py to __main__.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_ete_build/test_sptree.py to test_sptree.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_ete_build/test_modeltest.py to test_modeltest.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_ete_build/test_genetree.py to test_genetree.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_ete_build/test_manual_alg.py to test_manual_alg.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_ete_build/__init__.py to __init__.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_evol.py to test_evol.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_arraytable.py to test_arraytable.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_circle_label.py to test_circle_label.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/__init__.py to __init__.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_ete_evol.py to test_ete_evol.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_interop.py to test_interop.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_xml_parsers.py to test_xml_parsers.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_ncbiquery.py to test_ncbiquery.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_issue258/issue258.py to issue258.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_tree.py to test_tree.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview/face_grid.py to face_grid.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview/test_all_treeview.py to test_all_treeview.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview/tree_faces.py to tree_faces.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview/img_faces.py to img_faces.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview/node_background.py to node_background.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview/bubble_map.py to bubble_map.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview/new_seq_face.py to new_seq_face.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview/node_style.py to node_style.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview/random_draw.py to random_draw.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview/phylotree_visualization.py to phylotree_visualization.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview/floating_piecharts.py to floating_piecharts.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview/face_positions.py to face_positions.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview/face_rotation.py to face_rotation.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview/item_faces.py to item_faces.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview/seq_motif_faces.py to seq_motif_faces.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview/barchart_and_piechart_faces.py to barchart_and_piechart_faces.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/test/test_treeview/__init__.py to __init__.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview/_open_newick.py to _open_newick.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview/svg_colors.py to svg_colors.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview/_mainwindow.py to _mainwindow.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview/qt4_rect_render.py to qt4_rect_render.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview/main.py to main.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview/templates.py to templates.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview/_about.py to _about.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview/qt4_circular_render.py to qt4_circular_render.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview/_search_dialog.py to _search_dialog.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview/qt4_gui.py to qt4_gui.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview/__init__.py to __init__.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview/qt.py to qt.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview/node_gui_actions.py to node_gui_actions.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview/_show_codeml.py to _show_codeml.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview/_show_newick.py to _show_newick.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview/qt4_render.py to qt4_render.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview/drawer.py to drawer.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview/qt4_face_render.py to qt4_face_render.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview/layouts.py to layouts.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview/ete_resources_rc.py to ete_resources_rc.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/treeview/faces.py to faces.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_extract.py to ete_extract.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_expand.py to ete_expand.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_annotate.py to ete_annotate.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete.py to ete.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_evol.py to ete_evol.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_view.py to ete_view.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_maptrees.py to ete_maptrees.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_mod.py to ete_mod.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_ncbiquery.py to ete_ncbiquery.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_compare.py to ete_compare.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/visualize.py to visualize.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/curses_gui.py to curses_gui.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/configcheck.py to configcheck.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/interface.py to interface.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/db.py to db.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/workflow/supermatrix.py to supermatrix.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/workflow/genetree.py to genetree.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/workflow/common.py to common.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/workflow/__init__.py to __init__.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/master_job.py to master_job.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/logger.py to logger.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/configobj.py to configobj.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/validate.py to validate.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/sge.py to sge.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/errors.py to errors.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/utils.py to utils.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/scheduler.py to scheduler.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/seqio.py to seqio.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task/iqtree.py to iqtree.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task/msf.py to msf.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task/prottest2.py to prottest2.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task/fasttree.py to fasttree.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task/mafft.py to mafft.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task/meta_aligner.py to meta_aligner.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task/dummytree.py to dummytree.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task/raxml.py to raxml.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task/pmodeltest.py to pmodeltest.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task/concat_alg.py to concat_alg.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task/cog_creator.py to cog_creator.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task/merger.py to merger.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task/__init__.py to __init__.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task/muscle.py to muscle.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task/cog_selector.py to cog_selector.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task/prottest.py to prottest.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task/trimal.py to trimal.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task/dialigntx.py to dialigntx.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task/tcoffee.py to tcoffee.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task/phyml.py to phyml.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task/uhire.py to uhire.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task/dummyalg.py to dummyalg.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task/jmodeltest.py to jmodeltest.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/task/clustalo.py to clustalo.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/getch.py to getch.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/ordereddict.py to ordereddict.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/__init__.py to __init__.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/apps.py to apps.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build_lib/master_task.py to master_task.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_upgrade_tools.py to ete_upgrade_tools.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_build.py to ete_build.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/common.py to common.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_generate.py to ete_generate.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/utils.py to utils.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/__init__.py to __init__.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/tools/ete_split.py to ete_split.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/citation.py to citation.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/phylomedb/phylomeDB3.py to phylomeDB3.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/phylomedb/__init__.py to __init__.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/phylomedb/phylomeDB.py to phylomeDB.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/coretype/tree.py to tree.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/coretype/seqgroup.py to seqgroup.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/coretype/arraytable.py to arraytable.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/coretype/__init__.py to __init__.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/evol/parser/__init__.py to __init__.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/evol/parser/codemlparser.py to codemlparser.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/evol/parser/slrparser.py to slrparser.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/evol/model.py to model.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/evol/evoltree.py to evoltree.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/evol/utils.py to utils.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/evol/__init__.py to __init__.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3/evol/control.py to control.pyc writing byte-compilation script '/tmp/tmpBBVDNR.py' /usr/local/bin/python2.7 -O /tmp/tmpBBVDNR.py removing /tmp/tmpBBVDNR.py running install_data creating /construction/biology/py-ete3/stage/usr/local/ete3 creating /construction/biology/py-ete3/stage/usr/local/ete3/tools copying ete3/tools/ete_build.cfg -> /construction/biology/py-ete3/stage/usr/local/ete3/tools running install_egg_info Copying ete3.egg-info to /construction/biology/py-ete3/stage/usr/local/lib/python2.7/site-packages/ete3-3.1.2-py2.7.egg-info running install_scripts Installing ete3 script to /construction/biology/py-ete3/stage/usr/local/bin writing list of installed files to '/construction/biology/py-ete3/.PLIST.pymodtmp'  - Done! -  ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX Move: bin/ete3 --> bin/ete3-2.7 ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:06 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py27-ete3-3.1.2 file sizes/checksums [740]: 0% file sizes/checksums [740]: 13% file sizes/checksums [740]: 27% file sizes/checksums [740]: 40% file sizes/checksums [740]: 54% file sizes/checksums [740]: 67% file sizes/checksums [740]: 81% file sizes/checksums [740]: 94% file sizes/checksums [740]: 100% packing files [740]: 0% packing files [740]: 13% packing files [740]: 27% packing files [740]: 40% packing files [740]: 54% packing files [740]: 67% packing files [740]: 81% packing files [740]: 94% packing files [740]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:11 TOTAL TIME 00:02:23