------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/libffi-3.3_1.txz Installing /packages/All/expat-2.2.8.txz Installing /packages/All/ncurses-6.2.20200831.txz Installing /packages/All/readline-8.0.4.txz Installing /packages/All/gettext-runtime-0.21.txz Installing /packages/All/openssl-1.1.1g,1.txz Installing /packages/All/python37-3.7.9.txz ===== Message from python37-3.7.9: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 Installing /packages/All/py37-setuptools-44.0.0.txz Installing /packages/All/py37-toml-0.10.1.txz Installing /packages/All/py37-setuptools_scm-3.4.3_1.txz SUCCEEDED 00:00:07 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py37-dnaio-0.4.2 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py37-dnaio-0.4.2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-dnaio-0.4.2 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py37-dnaio-0.4.2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-dnaio-0.4.2 for building => SHA256 Checksum OK for dnaio-0.4.2.tar.gz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py37-dnaio-0.4.2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-dnaio-0.4.2 for building ===> Extracting for py37-dnaio-0.4.2 => SHA256 Checksum OK for dnaio-0.4.2.tar.gz. Extracted Memory Use: 0.83M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py37-dnaio-0.4.2 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py37-dnaio-0.4.2 depends on package: py37-setuptools_scm>0 - found ===> py37-dnaio-0.4.2 depends on package: py37-setuptools>0 - found ===> py37-dnaio-0.4.2 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py37-dnaio-0.4.2 depends on package: py37-setuptools_scm>0 - found ===> py37-dnaio-0.4.2 depends on package: py37-setuptools>0 - found ===> py37-dnaio-0.4.2 depends on file: /usr/local/bin/python3.7 - found ===> Configuring for py37-dnaio-0.4.2 running config SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py37-dnaio-0.4.2 running build running build_py creating build creating build/lib.dragonfly-5.9-x86_64-3.7 creating build/lib.dragonfly-5.9-x86_64-3.7/dnaio copying src/dnaio/chunks.py -> build/lib.dragonfly-5.9-x86_64-3.7/dnaio copying src/dnaio/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/dnaio copying src/dnaio/_version.py -> build/lib.dragonfly-5.9-x86_64-3.7/dnaio copying src/dnaio/readers.py -> build/lib.dragonfly-5.9-x86_64-3.7/dnaio copying src/dnaio/exceptions.py -> build/lib.dragonfly-5.9-x86_64-3.7/dnaio copying src/dnaio/_util.py -> build/lib.dragonfly-5.9-x86_64-3.7/dnaio copying src/dnaio/writers.py -> build/lib.dragonfly-5.9-x86_64-3.7/dnaio running build_ext building 'dnaio._core' extension creating build/temp.dragonfly-5.9-x86_64-3.7 creating build/temp.dragonfly-5.9-x86_64-3.7/src creating build/temp.dragonfly-5.9-x86_64-3.7/src/dnaio cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python3.7m -c src/dnaio/_core.c -o build/temp.dragonfly-5.9-x86_64-3.7/src/dnaio/_core.o src/dnaio/_core.c: In function '__pyx_gb_5dnaio_5_core_4generator': src/dnaio/_core.c:4718:57: warning: comparison of integer expressions of different signedness: 'Py_ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] if (unlikely(!((__pyx_cur_scope->__pyx_v_bufstart < __pyx_t_6) != 0))) { ^ src/dnaio/_core.c:803:43: note: in definition of macro 'unlikely' #define unlikely(x) __builtin_expect(!!(x), 0) ^ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-3.7/src/dnaio/_core.o -L/usr/local/lib -lpython3.7m -o build/lib.dragonfly-5.9-x86_64-3.7/dnaio/_core.so SUCCEEDED 00:00:11 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py37-dnaio-0.4.2 depends on package: py37-setuptools>0 - found ===> py37-dnaio-0.4.2 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py37-dnaio-0.4.2 ===> py37-dnaio-0.4.2 depends on package: py37-setuptools>0 - found ===> py37-dnaio-0.4.2 depends on file: /usr/local/bin/python3.7 - found ===> Generating temporary packing list running install running build running build_py copying src/dnaio/_version.py -> build/lib.dragonfly-5.9-x86_64-3.7/dnaio running build_ext running install_lib creating /construction/biology/py-dnaio/stage/usr/local/lib/python3.7 creating /construction/biology/py-dnaio/stage/usr/local/lib/python3.7/site-packages creating /construction/biology/py-dnaio/stage/usr/local/lib/python3.7/site-packages/dnaio copying build/lib.dragonfly-5.9-x86_64-3.7/dnaio/__init__.py -> /construction/biology/py-dnaio/stage/usr/local/lib/python3.7/site-packages/dnaio copying build/lib.dragonfly-5.9-x86_64-3.7/dnaio/_util.py -> /construction/biology/py-dnaio/stage/usr/local/lib/python3.7/site-packages/dnaio copying build/lib.dragonfly-5.9-x86_64-3.7/dnaio/exceptions.py -> /construction/biology/py-dnaio/stage/usr/local/lib/python3.7/site-packages/dnaio copying build/lib.dragonfly-5.9-x86_64-3.7/dnaio/writers.py -> /construction/biology/py-dnaio/stage/usr/local/lib/python3.7/site-packages/dnaio copying build/lib.dragonfly-5.9-x86_64-3.7/dnaio/chunks.py -> /construction/biology/py-dnaio/stage/usr/local/lib/python3.7/site-packages/dnaio copying build/lib.dragonfly-5.9-x86_64-3.7/dnaio/readers.py -> /construction/biology/py-dnaio/stage/usr/local/lib/python3.7/site-packages/dnaio copying build/lib.dragonfly-5.9-x86_64-3.7/dnaio/_version.py -> /construction/biology/py-dnaio/stage/usr/local/lib/python3.7/site-packages/dnaio copying build/lib.dragonfly-5.9-x86_64-3.7/dnaio/_core.so -> /construction/biology/py-dnaio/stage/usr/local/lib/python3.7/site-packages/dnaio byte-compiling /construction/biology/py-dnaio/stage/usr/local/lib/python3.7/site-packages/dnaio/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/biology/py-dnaio/stage/usr/local/lib/python3.7/site-packages/dnaio/_util.py to _util.cpython-37.pyc byte-compiling /construction/biology/py-dnaio/stage/usr/local/lib/python3.7/site-packages/dnaio/exceptions.py to exceptions.cpython-37.pyc byte-compiling /construction/biology/py-dnaio/stage/usr/local/lib/python3.7/site-packages/dnaio/writers.py to writers.cpython-37.pyc byte-compiling /construction/biology/py-dnaio/stage/usr/local/lib/python3.7/site-packages/dnaio/chunks.py to chunks.cpython-37.pyc byte-compiling /construction/biology/py-dnaio/stage/usr/local/lib/python3.7/site-packages/dnaio/readers.py to readers.cpython-37.pyc byte-compiling /construction/biology/py-dnaio/stage/usr/local/lib/python3.7/site-packages/dnaio/_version.py to _version.cpython-37.pyc writing byte-compilation script '/tmp/tmpypqzn68u.py' /usr/local/bin/python3.7 /tmp/tmpypqzn68u.py removing /tmp/tmpypqzn68u.py running install_egg_info running egg_info creating src/dnaio.egg-info writing src/dnaio.egg-info/PKG-INFO writing dependency_links to src/dnaio.egg-info/dependency_links.txt writing requirements to src/dnaio.egg-info/requires.txt writing top-level names to src/dnaio.egg-info/top_level.txt writing manifest file 'src/dnaio.egg-info/SOURCES.txt' reading manifest file 'src/dnaio.egg-info/SOURCES.txt' writing manifest file 'src/dnaio.egg-info/SOURCES.txt' Copying src/dnaio.egg-info to /construction/biology/py-dnaio/stage/usr/local/lib/python3.7/site-packages/dnaio-0.4.2-py3.7.egg-info running install_scripts writing list of installed files to '/construction/biology/py-dnaio/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: 'lib/python3.7/site-packages/dnaio/_core.so' is not stripped consider trying INSTALL_TARGET=install-strip or using ${STRIP_CMD} Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:04 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py37-dnaio-0.4.2 file sizes/checksums [27]: 0% file sizes/checksums [27]: 100% packing files [27]: 0% packing files [27]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:01 TOTAL TIME 00:00:26