------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 UNAME_r=5.9 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- ===> The following configuration options are available for phylip-3.697_1,1: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- MAKE=gmake XDG_DATA_HOME=/construction/biology/phylip XDG_CONFIG_HOME=/construction/biology/phylip HOME=/construction/biology/phylip TMPDIR="/tmp" PATH=/construction/biology/phylip/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/biology/phylip XDG_CONFIG_HOME=/construction/biology/phylip HOME=/construction/biology/phylip TMPDIR="/tmp" PATH=/construction/biology/phylip/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -fcommon -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -fcommon -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- CC="cc" CFLAGS="-pipe -fcommon -O2 -fno-strict-aliasing -DUNX" DFLAGS="-pipe -fcommon -O2 -fno-strict-aliasing -DX -I/usr/local/include" DLIBS="-L/usr/local/lib -lX11 -lXaw -lXt -lm" DESTDIR=/construction/biology/phylip/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- PORTDOCS="" OSREL=5.9 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/phylip" EXAMPLESDIR="share/examples/phylip" DATADIR="share/phylip" WWWDIR="www/phylip" ETCDIR="etc/phylip" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/phylip DOCSDIR=/usr/local/share/doc/phylip EXAMPLESDIR=/usr/local/share/examples/phylip WWWDIR=/usr/local/www/phylip ETCDIR=/usr/local/etc/phylip SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_SUFX=.txz DEVELOPER=1 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=500909 OSVERSION=9999999 OSREL=5.9 _OSRELEASE=5.9-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=10 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gettext-runtime-0.21.txz Installing /packages/All/ncurses-6.2.20210213.txz Installing /packages/All/readline-8.1.0.txz Installing /packages/All/bash-5.1.4_1.txz Installing /packages/All/gmake-4.3_2.txz Installing /packages/All/libpthread-stubs-0.4.txz Installing /packages/All/libXau-1.0.9.txz Installing /packages/All/xorgproto-2020.1.txz Installing /packages/All/libXdmcp-1.1.3.txz Installing /packages/All/libxcb-1.14_1.txz Installing /packages/All/libX11-1.6.12,1.txz Installing /packages/All/libXext-1.3.4,1.txz Installing /packages/All/libICE-1.0.10,1.txz Installing /packages/All/libSM-1.2.3,1.txz Installing /packages/All/libXt-1.2.1,1.txz Installing /packages/All/libXmu-1.1.3,1.txz Installing /packages/All/libXpm-3.5.13.txz Installing /packages/All/libXaw-1.0.13_3,2.txz SUCCEEDED 00:00:06 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- ===> NOTICE: The phylip port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Unmaintained and dead upstream, does not build with -fno-common (llvm 11). It is scheduled to be removed on or after 2021-04-01. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> phylip-3.697_1,1 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> NOTICE: The phylip port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Unmaintained and dead upstream, does not build with -fno-common (llvm 11). It is scheduled to be removed on or after 2021-04-01. ===> phylip-3.697_1,1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by phylip-3.697_1,1 for building SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> NOTICE: The phylip port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Unmaintained and dead upstream, does not build with -fno-common (llvm 11). It is scheduled to be removed on or after 2021-04-01. ===> phylip-3.697_1,1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by phylip-3.697_1,1 for building => SHA256 Checksum OK for phylip-3.697.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> NOTICE: The phylip port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Unmaintained and dead upstream, does not build with -fno-common (llvm 11). It is scheduled to be removed on or after 2021-04-01. ===> phylip-3.697_1,1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by phylip-3.697_1,1 for building ===> Extracting for phylip-3.697_1,1 => SHA256 Checksum OK for phylip-3.697.tar.gz. Extracted Memory Use: 8.76M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for phylip-3.697_1,1 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> phylip-3.697_1,1 depends on executable: bash - found ===> phylip-3.697_1,1 depends on package: gmake>=4.3 - found ===> phylip-3.697_1,1 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> phylip-3.697_1,1 depends on file: /usr/local/libdata/pkgconfig/xaw7.pc - found ===> phylip-3.697_1,1 depends on file: /usr/local/libdata/pkgconfig/xt.pc - found SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> phylip-3.697_1,1 depends on executable: bash - found ===> phylip-3.697_1,1 depends on package: gmake>=4.3 - found ===> phylip-3.697_1,1 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> phylip-3.697_1,1 depends on file: /usr/local/libdata/pkgconfig/xaw7.pc - found ===> phylip-3.697_1,1 depends on file: /usr/local/libdata/pkgconfig/xt.pc - found ===> Configuring for phylip-3.697_1,1 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for phylip-3.697_1,1 gmake[1]: Entering directory '/construction/biology/phylip/phylip-3.697/src' cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o clique.o clique.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o disc.o disc.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o phylip.o phylip.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o consense.o consense.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o cons.o cons.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o contml.o contml.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o cont.o cont.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o contrast.o contrast.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o dnacomp.o dnacomp.c Building PHYLIP version 3.696 cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o seq.o seq.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o dnadist.o dnadist.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o dnainvar.o dnainvar.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o dnaml.o dnaml.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o dnamlk.o dnamlk.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o mlclock.o mlclock.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o printree.o printree.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o dnamove.o dnamove.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o moves.o moves.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o dnapars.o dnapars.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o dnapenny.o dnapenny.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o dolmove.o dolmove.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o dollo.o dollo.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o dollop.o dollop.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o dolpenny.o dolpenny.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o factor.o factor.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o fitch.o fitch.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o dist.o dist.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o gendist.o gendist.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o kitsch.o kitsch.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o mix.o mix.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o wagner.o wagner.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o move.o move.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o neighbor.o neighbor.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o pars.o pars.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o discrete.o discrete.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o penny.o penny.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o proml.o proml.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o promlk.o promlk.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o protdist.o protdist.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o protpars.o protpars.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o restdist.o restdist.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o restml.o restml.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o retree.o retree.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o seqboot.o seqboot.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -c -o treedist.o treedist.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DX -I/usr/local/include -c drawgram.c drawgram.c: In function 'drawgram': drawgram.c:2111:9: warning: implicit declaration of function 'makebox'; did you mean 'makedev'? [-Wimplicit-function-declaration] makebox(fontname,&xoffset,&yoffset,&scale,spp); ^~~~~~~ makedev cc -pipe -fcommon -O2 -fno-strict-aliasing -DX -I/usr/local/include -c draw.c draw.c: In function 'metricforfont': draw.c:2603:53: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesroman_metric[i-31], ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2602:15: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2591:49: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesroman_metric[i-31], ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2590:11: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2551:48: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesbolditalic_metric[i-31]; ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2550:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2548:42: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesbold_metric[i-31]; ~~~~~~~~~~~~~~~~^~~~~~ draw.c:2547:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2545:44: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesitalic_metric[i-31]; ~~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2544:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2542:43: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesroman_metric[i-31]; ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2541:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2539:43: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesroman_metric[i-31]; ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2538:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2536:46: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = helveticabold_metric[i-31]; ~~~~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2535:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2532:42: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = helvetica_metric[i-31]; ~~~~~~~~~~~~~~~~^~~~~~ draw.c:2531:5: note: within this loop for (i=31;i<256;++i) ^~~ cc -pipe -fcommon -O2 -fno-strict-aliasing -DX -I/usr/local/include -c draw2.c cc -pipe -fcommon -O2 -fno-strict-aliasing -DX -I/usr/local/include -shared -fPIC -c drawtree.c drawtree.c: In function 'drawtree': drawtree.c:3017:9: warning: implicit declaration of function 'makebox'; did you mean 'makedev'? [-Wimplicit-function-declaration] makebox(fontname,&xoffset,&yoffset,&scale,spp); ^~~~~~~ makedev cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX clique.o disc.o phylip.o -lm -o clique cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX consense.o phylip.o cons.o -lm -o consense cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX contml.o cont.o phylip.o -lm -o contml cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX contrast.o cont.o phylip.o -lm -o contrast cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX dnacomp.o seq.o phylip.o -lm -o dnacomp cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX dnadist.o seq.o phylip.o -lm -o dnadist cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX dnainvar.o seq.o phylip.o -lm -o dnainvar cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX dnaml.o seq.o phylip.o -lm -o dnaml cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX dnamlk.o seq.o phylip.o mlclock.o printree.o -lm -o dnamlk cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX dnamove.o seq.o moves.o phylip.o -lm -o dnamove cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX dnapars.o seq.o phylip.o -lm -o dnapars cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX dnapenny.o seq.o phylip.o -lm -o dnapenny cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX dolmove.o disc.o moves.o dollo.o phylip.o -lm -o dolmove cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX dollop.o disc.o dollo.o phylip.o -lm -o dollop cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX dolpenny.o disc.o dollo.o phylip.o -lm -o dolpenny cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX factor.o phylip.o -lm -o factor cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX fitch.o dist.o phylip.o -lm -o fitch cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX gendist.o phylip.o -lm -o gendist cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX kitsch.o dist.o phylip.o -lm -o kitsch cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX mix.o disc.o wagner.o phylip.o -lm -o mix cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX move.o disc.o moves.o wagner.o phylip.o -lm -o move cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX neighbor.o dist.o phylip.o -lm -o neighbor cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX pars.o discrete.o phylip.o -lm -o pars cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX penny.o disc.o wagner.o phylip.o -lm -o penny cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX protdist.o seq.o phylip.o -lm -o protdist cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX protpars.o seq.o phylip.o -lm -o protpars cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX restdist.o seq.o phylip.o -lm -o restdist cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX seqboot.o seq.o phylip.o -lm -o seqboot cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX treedist.o cons.o phylip.o -lm -o treedist cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX retree.o moves.o phylip.o -lm -o retree cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX promlk.o seq.o phylip.o mlclock.o printree.o -lm -o promlk cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX restml.o seq.o phylip.o -lm -o restml cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX proml.o seq.o phylip.o -lm -o proml cc -pipe -fcommon -O2 -fno-strict-aliasing -DX -I/usr/local/include draw.o draw2.o drawgram.o phylip.o -L/usr/local/lib -lX11 -lXaw -lXt -lm -o drawgram cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -o libdrawgram.so -shared -fPIC drawgram.c draw.c draw2.c phylip.c drawgram.c: In function 'drawgram': drawgram.c:2111:9: warning: implicit declaration of function 'makebox'; did you mean 'makedev'? [-Wimplicit-function-declaration] makebox(fontname,&xoffset,&yoffset,&scale,spp); ^~~~~~~ makedev cc -pipe -fcommon -O2 -fno-strict-aliasing -DX -I/usr/local/include draw.o draw2.o drawtree.o phylip.o -L/usr/local/lib -lX11 -lXaw -lXt -lm -o drawtree cc -pipe -fcommon -O2 -fno-strict-aliasing -DUNX -o libdrawtree.so -shared -fPIC drawtree.c draw.c draw2.c phylip.c drawtree.c: In function 'drawtree': drawtree.c:3017:9: warning: implicit declaration of function 'makebox'; did you mean 'makedev'? [-Wimplicit-function-declaration] makebox(fontname,&xoffset,&yoffset,&scale,spp); ^~~~~~~ makedev draw.c: In function 'metricforfont': draw.c:2603:53: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesroman_metric[i-31], ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2602:15: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2591:49: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesroman_metric[i-31], ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2590:11: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2551:48: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesbolditalic_metric[i-31]; ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2550:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2548:42: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesbold_metric[i-31]; ~~~~~~~~~~~~~~~~^~~~~~ draw.c:2547:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2545:44: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesitalic_metric[i-31]; ~~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2544:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2542:43: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesroman_metric[i-31]; ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2541:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2539:43: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesroman_metric[i-31]; ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2538:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2536:46: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = helveticabold_metric[i-31]; ~~~~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2535:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2532:42: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = helvetica_metric[i-31]; ~~~~~~~~~~~~~~~~^~~~~~ draw.c:2531:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c: In function 'metricforfont': draw.c:2603:53: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesroman_metric[i-31], ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2602:15: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2591:49: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesroman_metric[i-31], ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2590:11: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2551:48: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesbolditalic_metric[i-31]; ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2550:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2548:42: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesbold_metric[i-31]; ~~~~~~~~~~~~~~~~^~~~~~ draw.c:2547:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2545:44: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesitalic_metric[i-31]; ~~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2544:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2542:43: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesroman_metric[i-31]; ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2541:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2539:43: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = timesroman_metric[i-31]; ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2538:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2536:46: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = helveticabold_metric[i-31]; ~~~~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2535:5: note: within this loop for (i=31;i<256;++i) ^~~ draw.c:2532:42: warning: iteration 224 invokes undefined behavior [-Waggressive-loop-optimizations] fontmetric[i-31] = helvetica_metric[i-31]; ~~~~~~~~~~~~~~~~^~~~~~ draw.c:2531:5: note: within this loop for (i=31;i<256;++i) ^~~ Finished compiling. gmake[1]: Leaving directory '/construction/biology/phylip/phylip-3.697/src' SUCCEEDED 00:00:25 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> phylip-3.697_1,1 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> phylip-3.697_1,1 depends on file: /usr/local/libdata/pkgconfig/xaw7.pc - found ===> phylip-3.697_1,1 depends on file: /usr/local/libdata/pkgconfig/xt.pc - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for phylip-3.697_1,1 ===> phylip-3.697_1,1 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> phylip-3.697_1,1 depends on file: /usr/local/libdata/pkgconfig/xaw7.pc - found ===> phylip-3.697_1,1 depends on file: /usr/local/libdata/pkgconfig/xt.pc - found ===> Generating temporary packing list gmake[1]: Entering directory '/construction/biology/phylip/phylip-3.697/src' Building PHYLIP version 3.696 Finished compiling. Installing PHYLIP v3.6 binaries in ../exe Installing dynamic libraries in ../exe Installing jar files in ../exe Installing font files in ../exe Finished installation. Removing object files to save space Finished removing object files. Now will remove executable files from the current directory, but not from the executables directory. (If some are not here, the makefile will terminate with an error message but this is not a problem) Removing executables from this directory Finished cleanup. Done. gmake[1]: Leaving directory '/construction/biology/phylip/phylip-3.697/src' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for phylip-3.697_1,1 file sizes/checksums [90]: 0% file sizes/checksums [90]: 100% packing files [90]: 0% packing files [90]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:06 TOTAL TIME 00:00:42