------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/perl5-5.30.3.txz ===== Message from perl5-5.30.3: -- The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. Installing /packages/All/p5-Clone-PP-1.07.txz SUCCEEDED 00:00:07 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> p5-Bio-NEXUS-0.78_1 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> p5-Bio-NEXUS-0.78_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by p5-Bio-NEXUS-0.78_1 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> p5-Bio-NEXUS-0.78_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by p5-Bio-NEXUS-0.78_1 for building => SHA256 Checksum OK for Bio-NEXUS-0.78.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> p5-Bio-NEXUS-0.78_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by p5-Bio-NEXUS-0.78_1 for building ===> Extracting for p5-Bio-NEXUS-0.78_1 => SHA256 Checksum OK for Bio-NEXUS-0.78.tar.gz. Extracted Memory Use: 6.14M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for p5-Bio-NEXUS-0.78_1 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> p5-Bio-NEXUS-0.78_1 depends on package: p5-Clone-PP>=1.02 - found ===> p5-Bio-NEXUS-0.78_1 depends on package: perl5>=5.30.r1<5.31 - found ===> p5-Bio-NEXUS-0.78_1 depends on package: perl5>=5.30.r1<5.31 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> p5-Bio-NEXUS-0.78_1 depends on package: p5-Clone-PP>=1.02 - found ===> p5-Bio-NEXUS-0.78_1 depends on package: perl5>=5.30.r1<5.31 - found ===> p5-Bio-NEXUS-0.78_1 depends on package: perl5>=5.30.r1<5.31 - found ===> Configuring for p5-Bio-NEXUS-0.78_1 *** You don't seem to have Test::Deep installed. This means some functionality won't be available (though core functionality will be). Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::NEXUS Writing MYMETA.yml and MYMETA.json SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for p5-Bio-NEXUS-0.78_1 --- blib/lib/Bio/.exists --- --- blib/arch/.exists --- --- blib/lib/auto/Bio/NEXUS/.exists --- --- blib/arch/auto/Bio/NEXUS/.exists --- --- blib/bin/.exists --- --- blib/script/.exists --- --- blib/man1/.exists --- --- blib/man3/.exists --- --- config --- --- subdirs --- --- dynamic --- --- pm_to_blib --- --- blib/script/nex2text_tree.pl --- --- blib/script/nexplot.pl --- --- blib/script/nextool.pl --- --- blib/script/nex2text_tree.pl --- cp exec/nex2text_tree.pl blib/script/nex2text_tree.pl "/usr/local/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/nex2text_tree.pl --- blib/script/nexplot.pl --- cp exec/nexplot.pl blib/script/nexplot.pl "/usr/local/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/nexplot.pl --- blibdirs --- --- blib/script/nextool.pl --- cp exec/nextool.pl blib/script/nextool.pl "/usr/local/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/nextool.pl --- config --- --- dynamic --- --- linkext --- --- pm_to_blib --- cp lib/Bio/NEXUS/DistancesBlock.pm blib/lib/Bio/NEXUS/DistancesBlock.pm cp lib/Bio/NEXUS/Block.pm blib/lib/Bio/NEXUS/Block.pm cp lib/Bio/NEXUS/CharactersBlock.pm blib/lib/Bio/NEXUS/CharactersBlock.pm cp lib/Bio/NEXUS/TaxaBlock.pm blib/lib/Bio/NEXUS/TaxaBlock.pm cp lib/Bio/NEXUS/SetsBlock.pm blib/lib/Bio/NEXUS/SetsBlock.pm cp lib/Bio/NEXUS/Node.pm blib/lib/Bio/NEXUS/Node.pm cp lib/Bio/NEXUS/Matrix.pm blib/lib/Bio/NEXUS/Matrix.pm cp lib/Bio/NEXUS/TreesBlock.pm blib/lib/Bio/NEXUS/TreesBlock.pm cp lib/Bio/NEXUS/NotesBlock.pm blib/lib/Bio/NEXUS/NotesBlock.pm cp lib/Bio/NEXUS/Tools/NexModifier.pm blib/lib/Bio/NEXUS/Tools/NexModifier.pm cp lib/Bio/NEXUS/Util/Exceptions.pm blib/lib/Bio/NEXUS/Util/Exceptions.pm cp lib/Bio/NEXUS/HistoryBlock.pm blib/lib/Bio/NEXUS/HistoryBlock.pm cp lib/Bio/NEXUS.pm blib/lib/Bio/NEXUS.pm cp lib/Bio/NEXUS/DataBlock.pm blib/lib/Bio/NEXUS/DataBlock.pm cp lib/Bio/NEXUS/UnknownBlock.pm blib/lib/Bio/NEXUS/UnknownBlock.pm cp lib/Bio/NEXUS/AssumptionsBlock.pm blib/lib/Bio/NEXUS/AssumptionsBlock.pm cp lib/Bio/NEXUS/WeightSet.pm blib/lib/Bio/NEXUS/WeightSet.pm cp lib/Bio/NEXUS/CodonsBlock.pm blib/lib/Bio/NEXUS/CodonsBlock.pm cp lib/Bio/NEXUS/NHXCmd.pm blib/lib/Bio/NEXUS/NHXCmd.pm cp lib/Bio/NEXUS/Tools/GraphicsParams.pm blib/lib/Bio/NEXUS/Tools/GraphicsParams.pm cp lib/Bio/NEXUS/UnalignedBlock.pm blib/lib/Bio/NEXUS/UnalignedBlock.pm cp lib/Bio/NEXUS/SpanBlock.pm blib/lib/Bio/NEXUS/SpanBlock.pm cp lib/Bio/NEXUS/TaxUnit.pm blib/lib/Bio/NEXUS/TaxUnit.pm cp lib/Bio/NEXUS/Tree.pm blib/lib/Bio/NEXUS/Tree.pm cp lib/Bio/NEXUS/TaxUnitSet.pm blib/lib/Bio/NEXUS/TaxUnitSet.pm cp lib/Bio/NEXUS/Util/Logger.pm blib/lib/Bio/NEXUS/Util/Logger.pm cp lib/Bio/NEXUS/Functions.pm blib/lib/Bio/NEXUS/Functions.pm cp lib/Bio/NEXUS/Tools/NexPlotter.pm blib/lib/Bio/NEXUS/Tools/NexPlotter.pm --- pure_all --- --- pure_all --- --- manifypods --- Manifying 3 pod documents Manifying 28 pod documents --- all --- SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> p5-Bio-NEXUS-0.78_1 depends on package: p5-Clone-PP>=1.02 - found ===> p5-Bio-NEXUS-0.78_1 depends on package: perl5>=5.30.r1<5.31 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for p5-Bio-NEXUS-0.78_1 ===> p5-Bio-NEXUS-0.78_1 depends on package: p5-Clone-PP>=1.02 - found ===> p5-Bio-NEXUS-0.78_1 depends on package: perl5>=5.30.r1<5.31 - found ===> Generating temporary packing list Manifying 3 pod documents Manifying 28 pod documents Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS.pm Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/DataBlock.pm Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/HistoryBlock.pm Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/UnalignedBlock.pm Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/DistancesBlock.pm Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/AssumptionsBlock.pm Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/CodonsBlock.pm Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/CharactersBlock.pm Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/Matrix.pm Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/NotesBlock.pm Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/TaxUnitSet.pm Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/WeightSet.pm Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/SpanBlock.pm Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/TreesBlock.pm Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/Functions.pm Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/Block.pm Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/SetsBlock.pm Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/NHXCmd.pm Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/Tree.pm Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/UnknownBlock.pm Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/TaxUnit.pm Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/Node.pm Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/TaxaBlock.pm Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/Tools/NexModifier.pm Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/Tools/GraphicsParams.pm Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/Tools/NexPlotter.pm Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/Util/Exceptions.pm Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/Util/Logger.pm Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/man/man1/nex2text_tree.pl.1 Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/man/man1/nexplot.pl.1 Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/man/man1/nextool.pl.1 Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::UnalignedBlock.3 Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::Tree.3 Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::WeightSet.3 Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::Util::Exceptions.3 Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::Util::Logger.3 Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::TreesBlock.3 Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::UnknownBlock.3 Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::Tools::NexPlotter.3 Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::CharactersBlock.3 Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::CodonsBlock.3 Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::Node.3 Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::AssumptionsBlock.3 Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::DistancesBlock.3 Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::Tools::GraphicsParams.3 Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::HistoryBlock.3 Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::Tools::NexModifier.3 Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::Functions.3 Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::DataBlock.3 Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS.3 Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::SetsBlock.3 Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::SpanBlock.3 Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::TaxaBlock.3 Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::TaxUnitSet.3 Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::Block.3 Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::NHXCmd.3 Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::NotesBlock.3 Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::Matrix.3 Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::TaxUnit.3 Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/bin/nextool.pl Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/bin/nexplot.pl Installing /construction/biology/p5-Bio-NEXUS/stage/usr/local/bin/nex2text_tree.pl ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Notice: You have some Perl modules as dependencies but you do not have devel/p5-Module-CoreList installed, the perlcore QA check gets better results when using it, especially with older Perl versions. Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for p5-Bio-NEXUS-0.78_1 file sizes/checksums [63]: 0% file sizes/checksums [63]: 100% packing files [63]: 0% packing files [63]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:01 TOTAL TIME 00:00:14