------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/perl5-5.32.0.txz Installing /packages/All/p5-IO-String-1.08_1.txz Installing /packages/All/p5-Data-Stag-0.14_2.txz Installing /packages/All/p5-Error-0.17029.txz Installing /packages/All/p5-Heap-0.80_1.txz Installing /packages/All/p5-Graph-0.9704,1.txz Installing /packages/All/p5-Clone-0.45.txz Installing /packages/All/p5-Encode-Locale-1.05.txz Installing /packages/All/p5-TimeDate-2.33,1.txz Installing /packages/All/p5-HTTP-Date-6.05.txz Installing /packages/All/p5-IO-HTML-1.001_1.txz Installing /packages/All/p5-LWP-MediaTypes-6.04.txz Installing /packages/All/p5-URI-1.76.txz Installing /packages/All/p5-HTTP-Message-6.25.txz Installing /packages/All/p5-IO-Stringy-2.113.txz Installing /packages/All/p5-IO-Tty-1.14.txz Installing /packages/All/p5-IPC-Run-0.99.txz Installing /packages/All/p5-Exporter-Tiny-1.002002.txz Installing /packages/All/p5-List-MoreUtils-XS-0.428.txz Installing /packages/All/p5-List-MoreUtils-0.428.txz Installing /packages/All/p5-Module-Build-0.4231.txz Installing /packages/All/p5-Set-Scalar-1.29.txz Installing /packages/All/p5-Class-Data-Inheritable-0.08_1.txz Installing /packages/All/p5-Devel-StackTrace-2.04.txz Installing /packages/All/p5-Exception-Class-1.44.txz Installing /packages/All/p5-Test-Deep-1.130.txz Installing /packages/All/p5-Algorithm-Diff-1.1903.txz Installing /packages/All/p5-Text-Diff-1.45.txz Installing /packages/All/p5-Test-Differences-0.650,1.txz Installing /packages/All/p5-Sub-Uplevel-0.2800.txz Installing /packages/All/p5-Test-Exception-0.43.txz Installing /packages/All/p5-Test-Warn-0.36.txz Installing /packages/All/p5-Test-Most-0.37.txz Installing /packages/All/p5-Test-RequiresInternet-0.05.txz Installing /packages/All/expat-2.2.8.txz Installing /packages/All/p5-XML-Parser-2.44.txz Installing /packages/All/p5-libxml-0.08_1.txz Installing /packages/All/p5-Digest-HMAC-1.03_1.txz Installing /packages/All/p5-Authen-NTLM-1.09_1.txz Installing /packages/All/p5-File-Listing-6.04_1.txz Installing /packages/All/p5-HTML-Tagset-3.20_1.txz Installing /packages/All/p5-HTML-Parser-3.72.txz Installing /packages/All/p5-HTTP-Cookies-6.08.txz Installing /packages/All/p5-HTTP-Daemon-6.12.txz Installing /packages/All/p5-HTTP-Negotiate-6.01_1.txz Installing /packages/All/openssl-1.1.1g,1.txz Installing /packages/All/p5-Net-SSLeay-1.88.txz Installing /packages/All/p5-Mozilla-CA-20200520.txz Installing /packages/All/p5-Socket6-0.29.txz Installing /packages/All/p5-IO-Socket-INET6-2.72_1.txz Installing /packages/All/p5-IO-Socket-SSL-2.068.txz Installing /packages/All/p5-Net-HTTP-6.19.txz Installing /packages/All/p5-Try-Tiny-0.30.txz Installing /packages/All/p5-WWW-RobotRules-6.02_1.txz Installing /packages/All/p5-libwww-6.47.txz Installing /packages/All/p5-XML-RegExp-0.04_1.txz Installing /packages/All/p5-XML-DOM-1.44_1.txz Installing /packages/All/p5-XML-XPathEngine-0.14_1.txz Installing /packages/All/p5-XML-DOM-XPath-0.14_1.txz Installing /packages/All/libxml2-2.9.10.txz Installing /packages/All/p5-XML-NamespaceSupport-1.12.txz Installing /packages/All/p5-XML-SAX-Base-1.09.txz Installing /packages/All/p5-XML-SAX-1.02.txz could not find ParserDetails.ini in /usr/local/lib/perl5/site_perl/XML/SAX Installing /packages/All/p5-XML-LibXML-2.0205,1.txz Installing /packages/All/p5-XML-Filter-BufferText-1.01_1.txz Installing /packages/All/p5-XML-SAX-Writer-0.57.txz Installing /packages/All/p5-HTML-Tree-5.07.txz Installing /packages/All/libiconv-1.16.txz Installing /packages/All/p5-Text-Iconv-1.7_3.txz Installing /packages/All/p5-Tie-IxHash-1.23_1.txz Installing /packages/All/p5-XML-XPath-1.44.txz Installing /packages/All/p5-XML-Twig-3.52.txz Installing /packages/All/p5-XML-Writer-0.625_1.txz Installing /packages/All/p5-YAML-1.30.txz Installing /packages/All/p5-BioPerl-1.007007_1.txz Installing /packages/All/p5-Bio-Coordinate-1.007001.txz Installing /packages/All/libnghttp2-1.41.0.txz Installing /packages/All/ca_root_nss-3.56.txz ===== Message from ca_root_nss-3.56: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem Installing /packages/All/curl-7.72.0.txz Installing /packages/All/io_lib-1.14.10.txz Installing /packages/All/p5-Bio-SCF-1.03_2.txz Installing /packages/All/p5-CGI-4.50.txz Installing /packages/All/freetype2-2.10.2.txz ===== Message from freetype2-2.10.2: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/site/index.html, if documentation was installed). Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gettext-runtime-0.21.txz Installing /packages/All/fontconfig-2.13.92_2,1.txz Running fc-cache to build fontconfig cache... Font directories: /usr/local/share/fonts /usr/local/lib/X11/fonts /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded Installing /packages/All/png-1.6.37.txz Installing /packages/All/jbigkit-2.1_1.txz Installing /packages/All/jpeg-turbo-2.0.4.txz Installing /packages/All/tiff-4.1.0.txz Installing /packages/All/giflib-5.2.1.txz Installing /packages/All/webp-1.1.0.txz Installing /packages/All/libgd-2.3.0,1.txz Installing /packages/All/p5-GD-2.72.txz Installing /packages/All/p5-SVG-2.85.txz Installing /packages/All/p5-GD-SVG-0.33_6.txz Installing /packages/All/p5-Statistics-Descriptive-3.0702.txz SUCCEEDED 00:00:25 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> p5-Bio-Graphics-2.40_2 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> p5-Bio-Graphics-2.40_2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by p5-Bio-Graphics-2.40_2 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> p5-Bio-Graphics-2.40_2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by p5-Bio-Graphics-2.40_2 for building => SHA256 Checksum OK for Bio-Graphics-2.40.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> p5-Bio-Graphics-2.40_2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by p5-Bio-Graphics-2.40_2 for building ===> Extracting for p5-Bio-Graphics-2.40_2 => SHA256 Checksum OK for Bio-Graphics-2.40.tar.gz. Extracted Memory Use: 2.64M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for p5-Bio-Graphics-2.40_2 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> p5-Bio-Graphics-2.40_2 depends on package: p5-Bio-Coordinate>=1.007000 - found ===> p5-Bio-Graphics-2.40_2 depends on package: p5-Bio-SCF>=1.01 - found ===> p5-Bio-Graphics-2.40_2 depends on package: p5-BioPerl>=1.007000 - found ===> p5-Bio-Graphics-2.40_2 depends on package: p5-CGI>=0 - found ===> p5-Bio-Graphics-2.40_2 depends on package: p5-GD>=2.30 - found ===> p5-Bio-Graphics-2.40_2 depends on package: p5-GD-SVG>=0.32 - found ===> p5-Bio-Graphics-2.40_2 depends on package: p5-Statistics-Descriptive>=2.6 - found ===> p5-Bio-Graphics-2.40_2 depends on package: perl5>=5.32.r0<5.33 - found ===> p5-Bio-Graphics-2.40_2 depends on package: p5-Module-Build>=0.4206 - found ===> p5-Bio-Graphics-2.40_2 depends on package: perl5>=5.32.r0<5.33 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> p5-Bio-Graphics-2.40_2 depends on package: p5-Bio-Coordinate>=1.007000 - found ===> p5-Bio-Graphics-2.40_2 depends on package: p5-Bio-SCF>=1.01 - found ===> p5-Bio-Graphics-2.40_2 depends on package: p5-BioPerl>=1.007000 - found ===> p5-Bio-Graphics-2.40_2 depends on package: p5-CGI>=0 - found ===> p5-Bio-Graphics-2.40_2 depends on package: p5-GD>=2.30 - found ===> p5-Bio-Graphics-2.40_2 depends on package: p5-GD-SVG>=0.32 - found ===> p5-Bio-Graphics-2.40_2 depends on package: p5-Statistics-Descriptive>=2.6 - found ===> p5-Bio-Graphics-2.40_2 depends on package: perl5>=5.32.r0<5.33 - found ===> p5-Bio-Graphics-2.40_2 depends on package: p5-Module-Build>=0.4206 - found ===> p5-Bio-Graphics-2.40_2 depends on package: perl5>=5.32.r0<5.33 - found ===> Configuring for p5-Bio-Graphics-2.40_2 Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'Bio-Graphics' version '2.40' SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for p5-Bio-Graphics-2.40_2 Building Bio-Graphics SUCCEEDED 00:00:04 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> p5-Bio-Graphics-2.40_2 depends on package: p5-Bio-Coordinate>=1.007000 - found ===> p5-Bio-Graphics-2.40_2 depends on package: p5-Bio-SCF>=1.01 - found ===> p5-Bio-Graphics-2.40_2 depends on package: p5-BioPerl>=1.007000 - found ===> p5-Bio-Graphics-2.40_2 depends on package: p5-CGI>=0 - found ===> p5-Bio-Graphics-2.40_2 depends on package: p5-GD>=2.30 - found ===> p5-Bio-Graphics-2.40_2 depends on package: p5-GD-SVG>=0.32 - found ===> p5-Bio-Graphics-2.40_2 depends on package: p5-Statistics-Descriptive>=2.6 - found ===> p5-Bio-Graphics-2.40_2 depends on package: perl5>=5.32.r0<5.33 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for p5-Bio-Graphics-2.40_2 ===> p5-Bio-Graphics-2.40_2 depends on package: p5-Bio-Coordinate>=1.007000 - found ===> p5-Bio-Graphics-2.40_2 depends on package: p5-Bio-SCF>=1.01 - found ===> p5-Bio-Graphics-2.40_2 depends on package: p5-BioPerl>=1.007000 - found ===> p5-Bio-Graphics-2.40_2 depends on package: p5-CGI>=0 - found ===> p5-Bio-Graphics-2.40_2 depends on package: p5-GD>=2.30 - found ===> p5-Bio-Graphics-2.40_2 depends on package: p5-GD-SVG>=0.32 - found ===> p5-Bio-Graphics-2.40_2 depends on package: p5-Statistics-Descriptive>=2.6 - found ===> p5-Bio-Graphics-2.40_2 depends on package: perl5>=5.32.r0<5.33 - found ===> Generating temporary packing list Building Bio-Graphics Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man1/feature_draw.pl.1 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man1/search_overview.pl.1 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man1/frend.pl.1 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man1/contig_draw.pl.1 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/FeatureBase.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/DrawTransmembrane.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Feature.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/GDWrapper.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/FeatureFile.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/FeatureDir.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/ConfiguratorI.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Pictogram.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/RendererI.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Panel.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Util.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Layout.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Wiggle.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/dot.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/Factory.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/decorated_transcript.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/decorated_gene.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/anchored_arrow.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/fb_shmiggle.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/arrow.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/cross.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/cds.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/alignment.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/dna.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/broken_line.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/crossbox.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/dashed_line.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/ex.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/box.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/ellipse.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/allele_tower.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/christmas_arrow.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/dumbbell.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/diamond.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/extending_arrow.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/merged_alignment.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/wiggle_data.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/transcript.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/smoothing.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/trace.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/vista_plot.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/rndrect.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/hat.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/primers.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/track.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/xyplot.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/saw_teeth.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/processed_transcript.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/rainbow_gene.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/so_transcript.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/stackedplot.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/pinsertion.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/ruler_arrow.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/hybrid_plot.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/two_bolts.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/whiskerplot.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/toomany.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/gene.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/minmax.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/heat_map_ideogram.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/wiggle_xyplot.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/image.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/operon.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/wiggle_density.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/graded_segments.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/ideogram.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/span.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/translation.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/segmented_keyglyph.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/heterogeneous_segments.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/line.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/group.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/pairplot.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/scale.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/segments.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/wiggle_whiskers.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/weighted_arrow.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/triangle.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/tic_tac_toe.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/ragged_ends.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/read_pair.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/transcript2.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/fixedwidth.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/redgreen_box.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/repeating_shape.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/phylo_align.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/pentagram.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/merge_parts.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/flag.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/point_glyph.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/wiggle_box.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/three_letters.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/hidden.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/protein.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/spectrogram.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/lightning.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/topoview.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/heat_map.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/splice_site.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/wave.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/ternary_plot.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/text_in_box.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/generic.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/oval.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Glyph/redgreen_segment.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/FeatureFile/Iterator.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/Bio/Graphics/Wiggle/Loader.pm Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::heat_map_ideogram.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::heterogeneous_segments.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::hidden.3 Installing 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Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::pairplot.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::two_bolts.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::vista_plot.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Wiggle::Loader.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::fb_shmiggle.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::three_letters.3 Installing 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/construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::pentagram.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::rndrect.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::primers.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::FeatureFile::Iterator.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::flag.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::wiggle_xyplot.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::merge_parts.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::segments.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::FeatureFile.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::translation.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::image.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::phylo_align.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::whiskerplot.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::transcript.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::dumbbell.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::splice_site.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::generic.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::spectrogram.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::ragged_ends.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::text_in_box.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::Factory.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::rainbow_gene.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::arrow.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::tic_tac_toe.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Graphics::Glyph::box.3 Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/bin/coverage_to_topoview.pl Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/bin/render_msa.pl Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/bin/search_overview.pl Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/bin/frend.pl Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/bin/feature_draw.pl Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/bin/glyph_help.pl Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/bin/bam_coverage_windows.pl Installing /construction/biology/p5-Bio-Graphics/stage/usr/local/bin/contig_draw.pl ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: www/p5-CGI was in Perl CORE. Check with `corelist CGI 0` and `corelist -a CGI` if it should be conditionally added depending on PERL_LEVEL Warning: devel/p5-Module-Build was in Perl CORE. Check with `corelist Module::Build 0.4206` and `corelist -a Module::Build` if it should be conditionally added depending on PERL_LEVEL Notice: You have some Perl modules as dependencies but you do not have devel/p5-Module-CoreList installed, the perlcore QA check gets better results when using it, especially with older Perl versions. Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:07 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for p5-Bio-Graphics-2.40_2 file sizes/checksums [222]: 0% file sizes/checksums [222]: 45% file sizes/checksums [222]: 90% file sizes/checksums [222]: 100% packing files [222]: 0% packing files [222]: 45% packing files [222]: 90% packing files [222]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:03 TOTAL TIME 00:00:42