------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/perl5-5.30.3.txz ===== Message from perl5-5.30.3: -- The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. Installing /packages/All/p5-IO-String-1.08_1.txz Installing /packages/All/p5-Data-Stag-0.14_2.txz Installing /packages/All/p5-Error-0.17029.txz Installing /packages/All/p5-Heap-0.80_1.txz Installing /packages/All/p5-Graph-0.9704,1.txz Installing /packages/All/p5-Clone-0.45.txz Installing /packages/All/p5-Encode-Locale-1.05.txz Installing /packages/All/p5-TimeDate-2.33,1.txz Installing /packages/All/p5-HTTP-Date-6.05.txz Installing /packages/All/p5-IO-HTML-1.001_1.txz Installing /packages/All/p5-LWP-MediaTypes-6.04.txz Installing /packages/All/p5-URI-1.76.txz Installing /packages/All/p5-HTTP-Message-6.24.txz Installing /packages/All/p5-IO-stringy-2.111.txz Installing /packages/All/p5-IO-Tty-1.14.txz Installing /packages/All/p5-IPC-Run-0.99.txz Installing /packages/All/p5-Exporter-Tiny-1.002002.txz Installing /packages/All/p5-List-MoreUtils-XS-0.428.txz Installing /packages/All/p5-List-MoreUtils-0.428.txz Installing /packages/All/p5-Module-Build-0.4231.txz Installing /packages/All/p5-Set-Scalar-1.29.txz Installing /packages/All/p5-Class-Data-Inheritable-0.08_1.txz Installing /packages/All/p5-Devel-StackTrace-2.04.txz Installing /packages/All/p5-Exception-Class-1.44.txz Installing /packages/All/p5-Test-Deep-1.130.txz Installing /packages/All/p5-Algorithm-Diff-1.1903.txz Installing /packages/All/p5-Text-Diff-1.45.txz Installing /packages/All/p5-Test-Differences-0.650,1.txz Installing /packages/All/p5-Sub-Uplevel-0.2800.txz Installing /packages/All/p5-Test-Exception-0.43.txz Installing /packages/All/p5-Test-Warn-0.36.txz Installing /packages/All/p5-Test-Most-0.35.txz Installing /packages/All/p5-Test-RequiresInternet-0.05.txz Installing /packages/All/expat-2.2.8.txz Installing /packages/All/p5-XML-Parser-2.44.txz Installing /packages/All/p5-libxml-0.08_1.txz Installing /packages/All/p5-Digest-HMAC-1.03_1.txz Installing /packages/All/p5-Authen-NTLM-1.09_1.txz Installing /packages/All/p5-File-Listing-6.04_1.txz Installing /packages/All/p5-HTML-Tagset-3.20_1.txz Installing /packages/All/p5-HTML-Parser-3.72.txz Installing /packages/All/p5-HTTP-Cookies-6.08.txz Installing /packages/All/p5-HTTP-Daemon-6.10.txz Installing /packages/All/p5-HTTP-Negotiate-6.01_1.txz Installing /packages/All/openssl-1.1.1g,1.txz Installing /packages/All/p5-Net-SSLeay-1.88.txz Installing /packages/All/p5-Mozilla-CA-20180117.txz Installing /packages/All/p5-Socket6-0.29.txz Installing /packages/All/p5-IO-Socket-INET6-2.72_1.txz Installing /packages/All/p5-IO-Socket-SSL-2.068.txz Installing /packages/All/p5-Net-HTTP-6.19.txz Installing /packages/All/p5-Try-Tiny-0.30.txz Installing /packages/All/p5-WWW-RobotRules-6.02_1.txz Installing /packages/All/p5-libwww-6.44.txz Installing /packages/All/p5-XML-RegExp-0.04_1.txz Installing /packages/All/p5-XML-DOM-1.44_1.txz Installing /packages/All/p5-XML-XPathEngine-0.14_1.txz Installing /packages/All/p5-XML-DOM-XPath-0.14_1.txz Installing /packages/All/libxml2-2.9.10.txz Installing /packages/All/p5-XML-NamespaceSupport-1.12.txz Installing /packages/All/p5-XML-SAX-Base-1.09.txz Installing /packages/All/p5-XML-SAX-1.02.txz could not find ParserDetails.ini in /usr/local/lib/perl5/site_perl/XML/SAX Installing /packages/All/p5-XML-LibXML-2.0204,1.txz Installing /packages/All/p5-XML-Filter-BufferText-1.01_1.txz Installing /packages/All/p5-XML-SAX-Writer-0.57.txz Installing /packages/All/p5-HTML-Tree-5.07.txz Installing /packages/All/libiconv-1.16.txz Installing /packages/All/p5-Text-Iconv-1.7_3.txz Installing /packages/All/p5-Tie-IxHash-1.23_1.txz Installing /packages/All/p5-XML-XPath-1.44.txz Installing /packages/All/p5-XML-Twig-3.52.txz Installing /packages/All/p5-XML-Writer-0.625_1.txz Installing /packages/All/p5-YAML-1.30.txz Installing /packages/All/p5-BioPerl-1.007007.txz SUCCEEDED 00:00:18 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> p5-Bio-Das-1.17_4 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> p5-Bio-Das-1.17_4 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by p5-Bio-Das-1.17_4 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> p5-Bio-Das-1.17_4 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by p5-Bio-Das-1.17_4 for building => SHA256 Checksum OK for Bio-Das-1.17.tar.gz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> p5-Bio-Das-1.17_4 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by p5-Bio-Das-1.17_4 for building ===> Extracting for p5-Bio-Das-1.17_4 => SHA256 Checksum OK for Bio-Das-1.17.tar.gz. Extracted Memory Use: 0.45M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for p5-Bio-Das-1.17_4 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> p5-Bio-Das-1.17_4 depends on package: p5-BioPerl>=0 - found ===> p5-Bio-Das-1.17_4 depends on package: p5-HTML-Parser>=3 - found ===> p5-Bio-Das-1.17_4 depends on package: p5-libwww>=5 - found ===> p5-Bio-Das-1.17_4 depends on package: perl5>=5.30.r1<5.31 - found ===> p5-Bio-Das-1.17_4 depends on package: perl5>=5.30.r1<5.31 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> p5-Bio-Das-1.17_4 depends on package: p5-BioPerl>=0 - found ===> p5-Bio-Das-1.17_4 depends on package: p5-HTML-Parser>=3 - found ===> p5-Bio-Das-1.17_4 depends on package: p5-libwww>=5 - found ===> p5-Bio-Das-1.17_4 depends on package: perl5>=5.30.r1<5.31 - found ===> p5-Bio-Das-1.17_4 depends on package: perl5>=5.30.r1<5.31 - found ===> Configuring for p5-Bio-Das-1.17_4 Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::Das Writing MYMETA.yml and MYMETA.json SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for p5-Bio-Das-1.17_4 --- blib/lib/Bio/.exists --- --- blib/arch/.exists --- --- blib/lib/auto/Bio/Das/.exists --- --- blib/arch/auto/Bio/Das/.exists --- --- blib/bin/.exists --- --- blib/script/.exists --- --- blib/man1/.exists --- --- blib/man3/.exists --- --- config --- --- subdirs --- --- dynamic --- --- pm_to_blib --- --- blibdirs --- --- config --- --- dynamic --- --- linkext --- --- pm_to_blib --- cp Das/AGPServer/Parser.pm blib/lib/Bio/Das/AGPServer/Parser.pm cp Das/DSN.pm blib/lib/Bio/Das/DSN.pm cp Das/AGPServer/Config.pm blib/lib/Bio/Das/AGPServer/Config.pm cp Das/Request/Features.pm blib/lib/Bio/Das/Request/Features.pm cp Das/Request/Entry_points.pm blib/lib/Bio/Das/Request/Entry_points.pm cp Das/Type.pm blib/lib/Bio/Das/Type.pm cp Das/Request/Types.pm blib/lib/Bio/Das/Request/Types.pm cp Das/Segment.pm blib/lib/Bio/Das/Segment.pm cp Das.pm blib/lib/Bio/Das.pm cp Das/Request/Sequences.pm blib/lib/Bio/Das/Request/Sequences.pm cp Das/Map.pm blib/lib/Bio/Das/Map.pm cp Das/Request/Stylesheet.pm blib/lib/Bio/Das/Request/Stylesheet.pm cp Das/Feature.pm blib/lib/Bio/Das/Feature.pm cp Das/AGPServer/Daemon.pm blib/lib/Bio/Das/AGPServer/Daemon.pm cp Das/AGPServer/SQLStorage.pm blib/lib/Bio/Das/AGPServer/SQLStorage.pm cp Das/Util.pm blib/lib/Bio/Das/Util.pm cp Das/FeatureIterator.pm blib/lib/Bio/Das/FeatureIterator.pm cp Das/Request.pm blib/lib/Bio/Das/Request.pm cp Das/AGPServer/SQLStorage/MySQL/DB.pm blib/lib/Bio/Das/AGPServer/SQLStorage/MySQL/DB.pm cp Das/AGPServer/Proxy.pm blib/lib/Bio/Das/AGPServer/Proxy.pm cp Das/TypeHandler.pm blib/lib/Bio/Das/TypeHandler.pm cp Das/Request/Dsn.pm blib/lib/Bio/Das/Request/Dsn.pm cp Das/Stylesheet.pm blib/lib/Bio/Das/Stylesheet.pm cp Das/Request/Dnas.pm blib/lib/Bio/Das/Request/Dnas.pm cp Das/HTTP/Fetch.pm blib/lib/Bio/Das/HTTP/Fetch.pm cp Das/AGPServer/SQLStorage/CSV/DB.pm blib/lib/Bio/Das/AGPServer/SQLStorage/CSV/DB.pm cp Das/Request/Feature2Segments.pm blib/lib/Bio/Das/Request/Feature2Segments.pm --- pure_all --- --- manifypods --- Manifying 25 pod documents --- all --- SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> p5-Bio-Das-1.17_4 depends on package: p5-BioPerl>=0 - found ===> p5-Bio-Das-1.17_4 depends on package: p5-HTML-Parser>=3 - found ===> p5-Bio-Das-1.17_4 depends on package: p5-libwww>=5 - found ===> p5-Bio-Das-1.17_4 depends on package: perl5>=5.30.r1<5.31 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for p5-Bio-Das-1.17_4 ===> p5-Bio-Das-1.17_4 depends on package: p5-BioPerl>=0 - found ===> p5-Bio-Das-1.17_4 depends on package: p5-HTML-Parser>=3 - found ===> p5-Bio-Das-1.17_4 depends on package: p5-libwww>=5 - found ===> p5-Bio-Das-1.17_4 depends on package: perl5>=5.30.r1<5.31 - found ===> Generating temporary packing list Manifying 25 pod documents Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/Bio/Das.pm Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/Bio/Das/Map.pm Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/Bio/Das/Segment.pm Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/Bio/Das/DSN.pm Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/Bio/Das/FeatureIterator.pm Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/Bio/Das/Type.pm Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/Bio/Das/TypeHandler.pm Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/Bio/Das/Feature.pm Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/Bio/Das/Util.pm Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/Bio/Das/Stylesheet.pm Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/Bio/Das/Request.pm Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/Bio/Das/HTTP/Fetch.pm Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/Bio/Das/Request/Types.pm Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/Bio/Das/Request/Sequences.pm Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/Bio/Das/Request/Feature2Segments.pm Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/Bio/Das/Request/Dnas.pm Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/Bio/Das/Request/Dsn.pm Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/Bio/Das/Request/Entry_points.pm Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/Bio/Das/Request/Stylesheet.pm Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/Bio/Das/Request/Features.pm Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/Bio/Das/AGPServer/Parser.pm Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/Bio/Das/AGPServer/Proxy.pm Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/Bio/Das/AGPServer/Config.pm Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/Bio/Das/AGPServer/SQLStorage.pm Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/Bio/Das/AGPServer/Daemon.pm Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/Bio/Das/AGPServer/SQLStorage/CSV/DB.pm Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/Bio/Das/AGPServer/SQLStorage/MySQL/DB.pm Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Das::AGPServer::Daemon.3 Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Das::Request::Stylesheet.3 Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Das::AGPServer::SQLStorage.3 Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Das::TypeHandler.3 Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Das::Type.3 Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Das::AGPServer::SQLStorage::CSV::DB.3 Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Das::HTTP::Fetch.3 Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Das::Stylesheet.3 Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Das::Request::Types.3 Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Das::Request::Entry_points.3 Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Das::FeatureIterator.3 Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Das::Request::Dnas.3 Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Das::Request::Sequences.3 Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Das::Feature.3 Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Das.3 Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Das::DSN.3 Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Das::Request::Feature2Segments.3 Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Das::Request::Dsn.3 Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Das::AGPServer::SQLStorage::MySQL::DB.3 Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Das::AGPServer::Parser.3 Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Das::Segment.3 Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Das::Util.3 Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Das::AGPServer::Config.3 Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Das::Map.3 Installing /construction/biology/p5-Bio-Das/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Das::Request.3 ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Notice: You have some Perl modules as dependencies but you do not have devel/p5-Module-CoreList installed, the perlcore QA check gets better results when using it, especially with older Perl versions. Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for p5-Bio-Das-1.17_4 file sizes/checksums [53]: 0% file sizes/checksums [53]: 100% packing files [53]: 0% packing files [53]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:01 TOTAL TIME 00:00:25