------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gettext-runtime-0.20.2.txz Installing /packages/All/gmake-4.3_2.txz Installing /packages/All/perl5-5.30.3.txz ===== Message from perl5-5.30.3: -- The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. SUCCEEDED 00:00:13 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> gmap-2015.09.21 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> gmap-2015.09.21 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by gmap-2015.09.21 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> gmap-2015.09.21 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by gmap-2015.09.21 for building => SHA256 Checksum OK for gmap-gsnap-2015-09-21.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> gmap-2015.09.21 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by gmap-2015.09.21 for building ===> Extracting for gmap-2015.09.21 => SHA256 Checksum OK for gmap-gsnap-2015-09-21.tar.gz. Extracted Memory Use: 25.86M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for gmap-2015.09.21 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> gmap-2015.09.21 depends on package: gmake>=4.3 - found ===> gmap-2015.09.21 depends on package: perl5>=5.30.r1<5.31 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> gmap-2015.09.21 depends on package: gmake>=4.3 - found ===> gmap-2015.09.21 depends on package: perl5>=5.30.r1<5.31 - found ===> Configuring for gmap-2015.09.21 configure: loading site script /xports/Templates/config.site checking package version... 2015-09-21 really loading site script /xports/Templates/config.site: file was found checking CFLAGS... -pipe -O2 -fno-strict-aliasing checking MPI_CFLAGS... checking build system type... x86_64-portbld-dragonfly5.9 checking host system type... x86_64-portbld-dragonfly5.9 checking target system type... x86_64-portbld-dragonfly5.9 checking for gcc... cc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether gmake sets $(MAKE)... yes checking for style of include used by gmake... GNU checking dependency style of cc... gcc3 checking bindir... /usr/local/bin checking for a working version of perl... /usr/local/bin/perl checking for gcc... (cached) cc checking whether we are using the GNU C compiler... (cached) yes checking whether cc accepts -g... (cached) yes checking for cc option to accept ISO C89... (cached) none needed checking whether cc understands -c and -o together... yes checking for mpicc... no checking for hcc... no checking for mpxlc_r... no checking for mpxlc... no checking for mpcc... no checking for cmpicc... no checking for cc... /usr/bin/cc checking for MPI_Init... no checking for MPI_Init in -lmpi... no checking for MPI_Init in -lmpich... no checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for fgrep... (cached) /usr/bin/fgrep checking for ld used by cc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 262144 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... no checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from cc object... ok checking how to run the C preprocessor... cpp checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for dlfcn.h... (cached) yes checking for objdir... .libs checking if cc supports -fno-rtti -fno-exceptions... no checking for cc option to produce PIC... -fPIC -DPIC checking if cc PIC flag -fPIC -DPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking if cc supports -c -o file.o... (cached) yes checking whether the cc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... dragonfly5.9 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for rint in -lm... yes checking whether to use MPI_File for input... not specified so enabled by default checking for pthreads feature... not specified so enabled by default checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... no checking whether pthreads work with -Kthread... no checking whether pthreads work with -kthread... no checking for the pthreads library -llthread... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for cc_r... cc checking for ANSI C header files... (cached) yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for fcntl.h... (cached) yes checking for limits.h... (cached) yes checking for stddef.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/types.h... (cached) yes checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for size_t... (cached) yes checking for off_t... (cached) yes checking for caddr_t... yes checking size of unsigned long... 8 checking size of unsigned long long... 8 checking size of off_t... 8 checking for _LARGEFILE_SOURCE value needed for large files... no checking whether alloca is enabled... not specified so enabled by default checking for working alloca.h... yes checking for alloca... yes checking whether mmap is enabled... not specified so enabled by default checking for working mmap with MAP_FIXED... yes checking for working mmap with MAP_VARIABLE... no checking for MAP_FILE in mmap... yes checking for MAP_VARIABLE in mmap... no checking for MAP_SHARED in mmap... yes checking for MAP_PRIVATE in mmap... yes checking for MAP_FAILED in mmap... yes checking for MADV_DONTNEED in madvise... yes checking for MADV_WILLNEED in madvise... yes checking for MADV_RANDOM in madvise... yes checking for MADV_SEQUENTIAL in madvise... yes checking for SHM_NORESERVE in shmget... no checking for ceil... yes checking for floor... yes checking for index... (cached) yes checking for log... yes checking for madvise... yes checking for memcpy... (cached) yes checking for memmove... (cached) yes checking for memset... (cached) yes checking for munmap... (cached) yes checking for pow... yes checking for rint... yes checking for stat64... no checking for strtoul... (cached) yes checking for sysconf... (cached) yes checking for sysctl... (cached) yes checking for sigaction... (cached) yes checking for shmget... (cached) yes checking for shmctl... yes checking for shmat... yes checking for shmdt... yes checking for semget... yes checking for semctl... yes checking for semop... yes checking for struct stat64... no checking for pagesize via sysconf... yes checking for pagesize via sysctl... no checking whether fopen accepts "b" mode... yes checking whether fopen accepts "t" mode... yes checking for builtin popcount/clz/ctz features... disabled checking for bsr instruction in assembly... yes checking whether sse2 is enabled... not specified so enabled by default checking compiler is defective and requires an immediate in sse2 shift commands... no checking whether ssse3 is enabled... not specified so enabled by default checking whether sse4.1 is enabled... not specified so enabled by default checking whether sse4.2 is enabled... not specified so enabled by default checking whether avx is enabled... not specified so enabled by default checking whether avx2 is enabled... not specified so enabled by default checking whether simd is enabled... disabled checking gmapdb... /usr/local/share checking MAX_READLENGTH... 300 checking for zlib support... enabled checking for zlib.h... (cached) yes checking for gzopen in -lz... yes checking for gzeof in -lz... yes checking for gzgetc in -lz... yes checking for gzgets in -lz... yes checking for gzclose in -lz... yes checking if zlib package is complete... working checking for gzbuffer in -lz... yes checking for bzlib support... enabled checking bzlib.h usability... yes checking bzlib.h presence... yes checking for bzlib.h... yes checking for BZ2_bzReadOpen in -lbz2... yes checking for BZ2_bzRead in -lbz2... yes checking for BZ2_bzReadClose in -lbz2... yes checking if bzlib package is complete... working configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating mpi/Makefile config.status: creating util/Makefile config.status: creating util/gmap_compress.pl config.status: creating util/gmap_uncompress.pl config.status: creating util/gmap_process.pl config.status: creating util/gmap_build.pl config.status: creating util/gmap_reassemble.pl config.status: creating util/md_coords.pl config.status: creating util/fa_coords.pl config.status: creating util/psl_splicesites.pl config.status: creating util/psl_introns.pl config.status: creating util/psl_genes.pl config.status: creating util/ensembl_genes.pl config.status: creating util/gtf_splicesites.pl config.status: creating util/gtf_introns.pl config.status: creating util/gtf_genes.pl config.status: creating util/gff3_splicesites.pl config.status: creating util/gff3_introns.pl config.status: creating util/gff3_genes.pl config.status: creating util/dbsnp_iit.pl config.status: creating util/gvf_iit.pl config.status: creating util/vcf_iit.pl config.status: creating tests/Makefile config.status: creating tests/align.test config.status: creating tests/coords1.test config.status: creating tests/setup1.test config.status: creating tests/iit.test config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands checking Standard compiler and flags to be used... cc -pipe -O2 -fno-strict-aliasing checking Standard linker flags to be used... checking MPI compiler and flags to be used... /usr/bin/cc checking MPI linker flags to be used... checking pthread compiler flags to be used... -pthread checking popcnt compiler flags to be used... checking SIMD features available on computer... checking SIMD compiler flags to be used... /usr/bin/env WRKSRC=/construction/biology/gmap/gmap-2015-09-21 REWARNFILE=/construction/biology/gmap/reinplace_warnings.txt /xports/Tools/scripts/sed_checked.sh -e 's|/usr/bin/perl|/usr/local/bin/perl|g' /construction/biology/gmap/gmap-2015-09-21/Makefile /construction/biology/gmap/gmap-2015-09-21/util/*.pl SUCCEEDED 00:00:20 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for gmap-2015.09.21 gmake[1]: Entering directory '/construction/biology/gmap/gmap-2015-09-21' Making all in src gmake[2]: Entering directory '/construction/biology/gmap/gmap-2015-09-21/src' gmake all-am gmake[3]: Entering directory '/construction/biology/gmap/gmap-2015-09-21/src' cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-except.o -MD -MP -MF .deps/gmap-except.Tpo -c -o gmap-except.o `test -f 'except.c' || echo './'`except.c cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-assert.o -MD -MP -MF .deps/gmap-assert.Tpo -c -o gmap-assert.o `test -f 'assert.c' || echo './'`assert.c cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-mem.o -MD -MP -MF .deps/gmap-mem.Tpo -c -o gmap-mem.o `test -f 'mem.c' || echo './'`mem.c cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-intlist.o -MD -MP -MF .deps/gmap-intlist.Tpo -c -o gmap-intlist.o `test -f 'intlist.c' || echo './'`intlist.c cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-list.o -MD -MP -MF .deps/gmap-list.Tpo -c -o gmap-list.o `test -f 'list.c' || echo './'`list.c cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-littleendian.o -MD -MP -MF .deps/gmap-littleendian.Tpo -c -o gmap-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-bigendian.o -MD -MP -MF .deps/gmap-bigendian.Tpo -c -o gmap-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-univinterval.o -MD -MP -MF .deps/gmap-univinterval.Tpo -c -o gmap-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-interval.o -MD -MP -MF .deps/gmap-interval.Tpo -c -o gmap-interval.o `test -f 'interval.c' || echo './'`interval.c cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-uintlist.o -MD -MP -MF .deps/gmap-uintlist.Tpo -c -o gmap-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c mv -f .deps/gmap-except.Tpo .deps/gmap-except.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-stopwatch.o -MD -MP -MF .deps/gmap-stopwatch.Tpo -c -o gmap-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c mv -f .deps/gmap-assert.Tpo .deps/gmap-assert.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-access.o -MD -MP -MF .deps/gmap-access.Tpo -c -o gmap-access.o `test -f 'access.c' || echo './'`access.c mv -f .deps/gmap-littleendian.Tpo .deps/gmap-littleendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-filestring.o -MD -MP -MF .deps/gmap-filestring.Tpo -c -o gmap-filestring.o `test -f 'filestring.c' || echo './'`filestring.c mv -f .deps/gmap-univinterval.Tpo .deps/gmap-univinterval.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-iit-read-univ.o -MD -MP -MF .deps/gmap-iit-read-univ.Tpo -c -o gmap-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c mv -f .deps/gmap-interval.Tpo .deps/gmap-interval.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-iit-read.o -MD -MP -MF .deps/gmap-iit-read.Tpo -c -o gmap-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c mv -f .deps/gmap-stopwatch.Tpo .deps/gmap-stopwatch.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-md5.o -MD -MP -MF .deps/gmap-md5.Tpo -c -o gmap-md5.o `test -f 'md5.c' || echo './'`md5.c mv -f .deps/gmap-mem.Tpo .deps/gmap-mem.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-bzip2.o -MD -MP -MF .deps/gmap-bzip2.Tpo -c -o gmap-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c mv -f .deps/gmap-bzip2.Tpo .deps/gmap-bzip2.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-sequence.o -MD -MP -MF .deps/gmap-sequence.Tpo -c -o gmap-sequence.o `test -f 'sequence.c' || echo './'`sequence.c mv -f .deps/gmap-bigendian.Tpo .deps/gmap-bigendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-reader.o -MD -MP -MF .deps/gmap-reader.Tpo -c -o gmap-reader.o `test -f 'reader.c' || echo './'`reader.c mv -f .deps/gmap-list.Tpo .deps/gmap-list.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-genomicpos.o -MD -MP -MF .deps/gmap-genomicpos.Tpo -c -o gmap-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c mv -f .deps/gmap-filestring.Tpo .deps/gmap-filestring.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-compress.o -MD -MP -MF .deps/gmap-compress.Tpo -c -o gmap-compress.o `test -f 'compress.c' || echo './'`compress.c mv -f .deps/gmap-reader.Tpo .deps/gmap-reader.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-compress-write.o -MD -MP -MF .deps/gmap-compress-write.Tpo -c -o gmap-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c mv -f .deps/gmap-genomicpos.Tpo .deps/gmap-genomicpos.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-gbuffer.o -MD -MP -MF .deps/gmap-gbuffer.Tpo -c -o gmap-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c mv -f .deps/gmap-access.Tpo .deps/gmap-access.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-genome.o -MD -MP -MF .deps/gmap-genome.Tpo -c -o gmap-genome.o `test -f 'genome.c' || echo './'`genome.c mv -f .deps/gmap-md5.Tpo .deps/gmap-md5.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-popcount.o -MD -MP -MF .deps/gmap-popcount.Tpo -c -o gmap-popcount.o `test -f 'popcount.c' || echo './'`popcount.c mv -f .deps/gmap-gbuffer.Tpo .deps/gmap-gbuffer.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-genome128_hr.o -MD -MP -MF .deps/gmap-genome128_hr.Tpo -c -o gmap-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c mv -f .deps/gmap-intlist.Tpo .deps/gmap-intlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-genome_sites.o -MD -MP -MF .deps/gmap-genome_sites.Tpo -c -o gmap-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c mv -f .deps/gmap-compress.Tpo .deps/gmap-compress.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-genome-write.o -MD -MP -MF .deps/gmap-genome-write.Tpo -c -o gmap-genome-write.o `test -f 'genome-write.c' || echo './'`genome-write.c mv -f .deps/gmap-iit-read-univ.Tpo .deps/gmap-iit-read-univ.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-bitpack64-read.o -MD -MP -MF .deps/gmap-bitpack64-read.Tpo -c -o gmap-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c mv -f .deps/gmap-uintlist.Tpo .deps/gmap-uintlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-bitpack64-readtwo.o -MD -MP -MF .deps/gmap-bitpack64-readtwo.Tpo -c -o gmap-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c mv -f .deps/gmap-compress-write.Tpo .deps/gmap-compress-write.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-indexdb.o -MD -MP -MF .deps/gmap-indexdb.Tpo -c -o gmap-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c mv -f .deps/gmap-popcount.Tpo .deps/gmap-popcount.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-indexdb_hr.o -MD -MP -MF .deps/gmap-indexdb_hr.Tpo -c -o gmap-indexdb_hr.o `test -f 'indexdb_hr.c' || echo './'`indexdb_hr.c mv -f .deps/gmap-bitpack64-readtwo.Tpo .deps/gmap-bitpack64-readtwo.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-oligo.o -MD -MP -MF .deps/gmap-oligo.Tpo -c -o gmap-oligo.o `test -f 'oligo.c' || echo './'`oligo.c mv -f .deps/gmap-genome-write.Tpo .deps/gmap-genome-write.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-block.o -MD -MP -MF .deps/gmap-block.Tpo -c -o gmap-block.o `test -f 'block.c' || echo './'`block.c mv -f .deps/gmap-block.Tpo .deps/gmap-block.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-chrom.o -MD -MP -MF .deps/gmap-chrom.Tpo -c -o gmap-chrom.o `test -f 'chrom.c' || echo './'`chrom.c mv -f .deps/gmap-oligo.Tpo .deps/gmap-oligo.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-segmentpos.o -MD -MP -MF .deps/gmap-segmentpos.Tpo -c -o gmap-segmentpos.o `test -f 'segmentpos.c' || echo './'`segmentpos.c chrom.c: In function 'Chrom_from_string': chrom.c:116:12: warning: comparison between pointer and zero character constant [-Wpointer-compare] while (p != '\0' && *p >= '0' && *p <= '9') { ^~ chrom.c:116:10: note: did you mean to dereference the pointer? while (p != '\0' && *p >= '0' && *p <= '9') { ^ mv -f .deps/gmap-sequence.Tpo .deps/gmap-sequence.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-chrnum.o -MD -MP -MF .deps/gmap-chrnum.Tpo -c -o gmap-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c mv -f .deps/gmap-chrom.Tpo .deps/gmap-chrom.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-uinttable.o -MD -MP -MF .deps/gmap-uinttable.Tpo -c -o gmap-uinttable.o `test -f 'uinttable.c' || echo './'`uinttable.c mv -f .deps/gmap-segmentpos.Tpo .deps/gmap-segmentpos.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-gregion.o -MD -MP -MF .deps/gmap-gregion.Tpo -c -o gmap-gregion.o `test -f 'gregion.c' || echo './'`gregion.c mv -f .deps/gmap-bitpack64-read.Tpo .deps/gmap-bitpack64-read.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-match.o -MD -MP -MF .deps/gmap-match.Tpo -c -o gmap-match.o `test -f 'match.c' || echo './'`match.c mv -f .deps/gmap-chrnum.Tpo .deps/gmap-chrnum.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-matchpool.o -MD -MP -MF .deps/gmap-matchpool.Tpo -c -o gmap-matchpool.o `test -f 'matchpool.c' || echo './'`matchpool.c mv -f .deps/gmap-indexdb_hr.Tpo .deps/gmap-indexdb_hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-diagnostic.o -MD -MP -MF .deps/gmap-diagnostic.Tpo -c -o gmap-diagnostic.o `test -f 'diagnostic.c' || echo './'`diagnostic.c mv -f .deps/gmap-uinttable.Tpo .deps/gmap-uinttable.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-stage1.o -MD -MP -MF .deps/gmap-stage1.Tpo -c -o gmap-stage1.o `test -f 'stage1.c' || echo './'`stage1.c mv -f .deps/gmap-diagnostic.Tpo .deps/gmap-diagnostic.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-diag.o -MD -MP -MF .deps/gmap-diag.Tpo -c -o gmap-diag.o `test -f 'diag.c' || echo './'`diag.c mv -f .deps/gmap-match.Tpo .deps/gmap-match.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-diagpool.o -MD -MP -MF .deps/gmap-diagpool.Tpo -c -o gmap-diagpool.o `test -f 'diagpool.c' || echo './'`diagpool.c mv -f .deps/gmap-matchpool.Tpo .deps/gmap-matchpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-cmet.o -MD -MP -MF .deps/gmap-cmet.Tpo -c -o gmap-cmet.o `test -f 'cmet.c' || echo './'`cmet.c mv -f .deps/gmap-diagpool.Tpo .deps/gmap-diagpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-atoi.o -MD -MP -MF .deps/gmap-atoi.Tpo -c -o gmap-atoi.o `test -f 'atoi.c' || echo './'`atoi.c mv -f .deps/gmap-diag.Tpo .deps/gmap-diag.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-orderstat.o -MD -MP -MF .deps/gmap-orderstat.Tpo -c -o gmap-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c mv -f .deps/gmap-indexdb.Tpo .deps/gmap-indexdb.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-oligoindex_hr.o -MD -MP -MF .deps/gmap-oligoindex_hr.Tpo -c -o gmap-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo './'`oligoindex_hr.c mv -f .deps/gmap-orderstat.Tpo .deps/gmap-orderstat.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-intron.o -MD -MP -MF .deps/gmap-intron.Tpo -c -o gmap-intron.o `test -f 'intron.c' || echo './'`intron.c mv -f .deps/gmap-atoi.Tpo .deps/gmap-atoi.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-maxent.o -MD -MP -MF .deps/gmap-maxent.Tpo -c -o gmap-maxent.o `test -f 'maxent.c' || echo './'`maxent.c mv -f .deps/gmap-intron.Tpo .deps/gmap-intron.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-maxent_hr.o -MD -MP -MF .deps/gmap-maxent_hr.Tpo -c -o gmap-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c mv -f .deps/gmap-gregion.Tpo .deps/gmap-gregion.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-pair.o -MD -MP -MF .deps/gmap-pair.Tpo -c -o gmap-pair.o `test -f 'pair.c' || echo './'`pair.c mv -f .deps/gmap-genome.Tpo .deps/gmap-genome.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-pairpool.o -MD -MP -MF .deps/gmap-pairpool.Tpo -c -o gmap-pairpool.o `test -f 'pairpool.c' || echo './'`pairpool.c mv -f .deps/gmap-cmet.Tpo .deps/gmap-cmet.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-cellpool.o -MD -MP -MF .deps/gmap-cellpool.Tpo -c -o gmap-cellpool.o `test -f 'cellpool.c' || echo './'`cellpool.c mv -f .deps/gmap-genome128_hr.Tpo .deps/gmap-genome128_hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-stage2.o -MD -MP -MF .deps/gmap-stage2.Tpo -c -o gmap-stage2.o `test -f 'stage2.c' || echo './'`stage2.c mv -f .deps/gmap-cellpool.Tpo .deps/gmap-cellpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-doublelist.o -MD -MP -MF .deps/gmap-doublelist.Tpo -c -o gmap-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c mv -f .deps/gmap-doublelist.Tpo .deps/gmap-doublelist.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-smooth.o -MD -MP -MF .deps/gmap-smooth.Tpo -c -o gmap-smooth.o `test -f 'smooth.c' || echo './'`smooth.c mv -f .deps/gmap-pairpool.Tpo .deps/gmap-pairpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-splicestringpool.o -MD -MP -MF .deps/gmap-splicestringpool.Tpo -c -o gmap-splicestringpool.o `test -f 'splicestringpool.c' || echo './'`splicestringpool.c mv -f .deps/gmap-splicestringpool.Tpo .deps/gmap-splicestringpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-splicetrie_build.o -MD -MP -MF .deps/gmap-splicetrie_build.Tpo -c -o gmap-splicetrie_build.o `test -f 'splicetrie_build.c' || echo './'`splicetrie_build.c mv -f .deps/gmap-genome_sites.Tpo .deps/gmap-genome_sites.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-splicetrie.o -MD -MP -MF .deps/gmap-splicetrie.Tpo -c -o gmap-splicetrie.o `test -f 'splicetrie.c' || echo './'`splicetrie.c mv -f .deps/gmap-splicetrie.Tpo .deps/gmap-splicetrie.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-boyer-moore.o -MD -MP -MF .deps/gmap-boyer-moore.Tpo -c -o gmap-boyer-moore.o `test -f 'boyer-moore.c' || echo './'`boyer-moore.c mv -f .deps/gmap-smooth.Tpo .deps/gmap-smooth.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-dynprog.o -MD -MP -MF .deps/gmap-dynprog.Tpo -c -o gmap-dynprog.o `test -f 'dynprog.c' || echo './'`dynprog.c mv -f .deps/gmap-boyer-moore.Tpo .deps/gmap-boyer-moore.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-dynprog_simd.o -MD -MP -MF .deps/gmap-dynprog_simd.Tpo -c -o gmap-dynprog_simd.o `test -f 'dynprog_simd.c' || echo './'`dynprog_simd.c mv -f .deps/gmap-maxent.Tpo .deps/gmap-maxent.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-dynprog_single.o -MD -MP -MF .deps/gmap-dynprog_single.Tpo -c -o gmap-dynprog_single.o `test -f 'dynprog_single.c' || echo './'`dynprog_single.c mv -f .deps/gmap-dynprog_simd.Tpo .deps/gmap-dynprog_simd.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-dynprog_genome.o -MD -MP -MF .deps/gmap-dynprog_genome.Tpo -c -o gmap-dynprog_genome.o `test -f 'dynprog_genome.c' || echo './'`dynprog_genome.c mv -f .deps/gmap-dynprog.Tpo .deps/gmap-dynprog.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-dynprog_cdna.o -MD -MP -MF .deps/gmap-dynprog_cdna.Tpo -c -o gmap-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo './'`dynprog_cdna.c mv -f .deps/gmap-stage1.Tpo .deps/gmap-stage1.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-dynprog_end.o -MD -MP -MF .deps/gmap-dynprog_end.Tpo -c -o gmap-dynprog_end.o `test -f 'dynprog_end.c' || echo './'`dynprog_end.c mv -f .deps/gmap-dynprog_single.Tpo .deps/gmap-dynprog_single.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-translation.o -MD -MP -MF .deps/gmap-translation.Tpo -c -o gmap-translation.o `test -f 'translation.c' || echo './'`translation.c mv -f .deps/gmap-splicetrie_build.Tpo .deps/gmap-splicetrie_build.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-pbinom.o -MD -MP -MF .deps/gmap-pbinom.Tpo -c -o gmap-pbinom.o `test -f 'pbinom.c' || echo './'`pbinom.c mv -f .deps/gmap-dynprog_cdna.Tpo .deps/gmap-dynprog_cdna.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-changepoint.o -MD -MP -MF .deps/gmap-changepoint.Tpo -c -o gmap-changepoint.o `test -f 'changepoint.c' || echo './'`changepoint.c mv -f .deps/gmap-changepoint.Tpo .deps/gmap-changepoint.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-stage3.o -MD -MP -MF .deps/gmap-stage3.Tpo -c -o gmap-stage3.o `test -f 'stage3.c' || echo './'`stage3.c mv -f .deps/gmap-dynprog_end.Tpo .deps/gmap-dynprog_end.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-request.o -MD -MP -MF .deps/gmap-request.Tpo -c -o gmap-request.o `test -f 'request.c' || echo './'`request.c mv -f .deps/gmap-request.Tpo .deps/gmap-request.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-result.o -MD -MP -MF .deps/gmap-result.Tpo -c -o gmap-result.o `test -f 'result.c' || echo './'`result.c mv -f .deps/gmap-pbinom.Tpo .deps/gmap-pbinom.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-output.o -MD -MP -MF .deps/gmap-output.Tpo -c -o gmap-output.o `test -f 'output.c' || echo './'`output.c mv -f .deps/gmap-dynprog_genome.Tpo .deps/gmap-dynprog_genome.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-inbuffer.o -MD -MP -MF .deps/gmap-inbuffer.Tpo -c -o gmap-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c mv -f .deps/gmap-result.Tpo .deps/gmap-result.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-samheader.o -MD -MP -MF .deps/gmap-samheader.Tpo -c -o gmap-samheader.o `test -f 'samheader.c' || echo './'`samheader.c mv -f .deps/gmap-inbuffer.Tpo .deps/gmap-inbuffer.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-outbuffer.o -MD -MP -MF .deps/gmap-outbuffer.Tpo -c -o gmap-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c mv -f .deps/gmap-samheader.Tpo .deps/gmap-samheader.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-chimera.o -MD -MP -MF .deps/gmap-chimera.Tpo -c -o gmap-chimera.o `test -f 'chimera.c' || echo './'`chimera.c mv -f .deps/gmap-iit-read.Tpo .deps/gmap-iit-read.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-datadir.o -MD -MP -MF .deps/gmap-datadir.Tpo -c -o gmap-datadir.o `test -f 'datadir.c' || echo './'`datadir.c mv -f .deps/gmap-stage2.Tpo .deps/gmap-stage2.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-getopt.o -MD -MP -MF .deps/gmap-getopt.Tpo -c -o gmap-getopt.o `test -f 'getopt.c' || echo './'`getopt.c mv -f .deps/gmap-output.Tpo .deps/gmap-output.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-getopt1.o -MD -MP -MF .deps/gmap-getopt1.Tpo -c -o gmap-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c mv -f .deps/gmap-outbuffer.Tpo .deps/gmap-outbuffer.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -MT gmap-gmap.o -MD -MP -MF .deps/gmap-gmap.Tpo -c -o gmap-gmap.o `test -f 'gmap.c' || echo './'`gmap.c mv -f .deps/gmap-getopt1.Tpo .deps/gmap-getopt1.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-except.o -MD -MP -MF .deps/gmapl-except.Tpo -c -o gmapl-except.o `test -f 'except.c' || echo './'`except.c mv -f .deps/gmapl-except.Tpo .deps/gmapl-except.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-assert.o -MD -MP -MF .deps/gmapl-assert.Tpo -c -o gmapl-assert.o `test -f 'assert.c' || echo './'`assert.c mv -f .deps/gmapl-assert.Tpo .deps/gmapl-assert.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-mem.o -MD -MP -MF .deps/gmapl-mem.Tpo -c -o gmapl-mem.o `test -f 'mem.c' || echo './'`mem.c mv -f .deps/gmap-chimera.Tpo .deps/gmap-chimera.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-intlist.o -MD -MP -MF .deps/gmapl-intlist.Tpo -c -o gmapl-intlist.o `test -f 'intlist.c' || echo './'`intlist.c mv -f .deps/gmap-datadir.Tpo .deps/gmap-datadir.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-list.o -MD -MP -MF .deps/gmapl-list.Tpo -c -o gmapl-list.o `test -f 'list.c' || echo './'`list.c mv -f .deps/gmapl-mem.Tpo .deps/gmapl-mem.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-littleendian.o -MD -MP -MF .deps/gmapl-littleendian.Tpo -c -o gmapl-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c mv -f .deps/gmap-getopt.Tpo .deps/gmap-getopt.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-bigendian.o -MD -MP -MF .deps/gmapl-bigendian.Tpo -c -o gmapl-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c mv -f .deps/gmapl-littleendian.Tpo .deps/gmapl-littleendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-univinterval.o -MD -MP -MF .deps/gmapl-univinterval.Tpo -c -o gmapl-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c mv -f .deps/gmap-translation.Tpo .deps/gmap-translation.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-interval.o -MD -MP -MF .deps/gmapl-interval.Tpo -c -o gmapl-interval.o `test -f 'interval.c' || echo './'`interval.c mv -f .deps/gmapl-univinterval.Tpo .deps/gmapl-univinterval.Po mv -f .deps/gmapl-intlist.Tpo .deps/gmapl-intlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-uintlist.o -MD -MP -MF .deps/gmapl-uintlist.Tpo -c -o gmapl-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-stopwatch.o -MD -MP -MF .deps/gmapl-stopwatch.Tpo -c -o gmapl-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c mv -f .deps/gmapl-interval.Tpo .deps/gmapl-interval.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-access.o -MD -MP -MF .deps/gmapl-access.Tpo -c -o gmapl-access.o `test -f 'access.c' || echo './'`access.c mv -f .deps/gmapl-stopwatch.Tpo .deps/gmapl-stopwatch.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-filestring.o -MD -MP -MF .deps/gmapl-filestring.Tpo -c -o gmapl-filestring.o `test -f 'filestring.c' || echo './'`filestring.c mv -f .deps/gmap-maxent_hr.Tpo .deps/gmap-maxent_hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-iit-read-univ.o -MD -MP -MF .deps/gmapl-iit-read-univ.Tpo -c -o gmapl-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c mv -f .deps/gmapl-list.Tpo .deps/gmapl-list.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-iit-read.o -MD -MP -MF .deps/gmapl-iit-read.Tpo -c -o gmapl-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c mv -f .deps/gmapl-bigendian.Tpo .deps/gmapl-bigendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-md5.o -MD -MP -MF .deps/gmapl-md5.Tpo -c -o gmapl-md5.o `test -f 'md5.c' || echo './'`md5.c mv -f .deps/gmapl-uintlist.Tpo .deps/gmapl-uintlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-bzip2.o -MD -MP -MF .deps/gmapl-bzip2.Tpo -c -o gmapl-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c mv -f .deps/gmapl-bzip2.Tpo .deps/gmapl-bzip2.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-sequence.o -MD -MP -MF .deps/gmapl-sequence.Tpo -c -o gmapl-sequence.o `test -f 'sequence.c' || echo './'`sequence.c mv -f .deps/gmapl-filestring.Tpo .deps/gmapl-filestring.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-reader.o -MD -MP -MF .deps/gmapl-reader.Tpo -c -o gmapl-reader.o `test -f 'reader.c' || echo './'`reader.c mv -f .deps/gmapl-access.Tpo .deps/gmapl-access.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-genomicpos.o -MD -MP -MF .deps/gmapl-genomicpos.Tpo -c -o gmapl-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c mv -f .deps/gmapl-reader.Tpo .deps/gmapl-reader.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-compress.o -MD -MP -MF .deps/gmapl-compress.Tpo -c -o gmapl-compress.o `test -f 'compress.c' || echo './'`compress.c mv -f .deps/gmapl-genomicpos.Tpo .deps/gmapl-genomicpos.Po mv -f .deps/gmapl-md5.Tpo .deps/gmapl-md5.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-compress-write.o -MD -MP -MF .deps/gmapl-compress-write.Tpo -c -o gmapl-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-gbuffer.o -MD -MP -MF .deps/gmapl-gbuffer.Tpo -c -o gmapl-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c mv -f .deps/gmapl-gbuffer.Tpo .deps/gmapl-gbuffer.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-genome.o -MD -MP -MF .deps/gmapl-genome.Tpo -c -o gmapl-genome.o `test -f 'genome.c' || echo './'`genome.c mv -f .deps/gmap-oligoindex_hr.Tpo .deps/gmap-oligoindex_hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-popcount.o -MD -MP -MF .deps/gmapl-popcount.Tpo -c -o gmapl-popcount.o `test -f 'popcount.c' || echo './'`popcount.c mv -f .deps/gmapl-compress.Tpo .deps/gmapl-compress.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-genome128_hr.o -MD -MP -MF .deps/gmapl-genome128_hr.Tpo -c -o gmapl-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c mv -f .deps/gmapl-compress-write.Tpo .deps/gmapl-compress-write.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-genome_sites.o -MD -MP -MF .deps/gmapl-genome_sites.Tpo -c -o gmapl-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c mv -f .deps/gmapl-sequence.Tpo .deps/gmapl-sequence.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-genome-write.o -MD -MP -MF .deps/gmapl-genome-write.Tpo -c -o gmapl-genome-write.o `test -f 'genome-write.c' || echo './'`genome-write.c mv -f .deps/gmapl-popcount.Tpo .deps/gmapl-popcount.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-bitpack64-read.o -MD -MP -MF .deps/gmapl-bitpack64-read.Tpo -c -o gmapl-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c mv -f .deps/gmap-pair.Tpo .deps/gmap-pair.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-bitpack64-readtwo.o -MD -MP -MF .deps/gmapl-bitpack64-readtwo.Tpo -c -o gmapl-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c mv -f .deps/gmapl-iit-read-univ.Tpo .deps/gmapl-iit-read-univ.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-indexdb.o -MD -MP -MF .deps/gmapl-indexdb.Tpo -c -o gmapl-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c mv -f .deps/gmapl-genome-write.Tpo .deps/gmapl-genome-write.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-indexdb_hr.o -MD -MP -MF .deps/gmapl-indexdb_hr.Tpo -c -o gmapl-indexdb_hr.o `test -f 'indexdb_hr.c' || echo './'`indexdb_hr.c mv -f .deps/gmapl-bitpack64-read.Tpo .deps/gmapl-bitpack64-read.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-oligo.o -MD -MP -MF .deps/gmapl-oligo.Tpo -c -o gmapl-oligo.o `test -f 'oligo.c' || echo './'`oligo.c mv -f .deps/gmapl-bitpack64-readtwo.Tpo .deps/gmapl-bitpack64-readtwo.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-block.o -MD -MP -MF .deps/gmapl-block.Tpo -c -o gmapl-block.o `test -f 'block.c' || echo './'`block.c mv -f .deps/gmapl-block.Tpo .deps/gmapl-block.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-chrom.o -MD -MP -MF .deps/gmapl-chrom.Tpo -c -o gmapl-chrom.o `test -f 'chrom.c' || echo './'`chrom.c mv -f .deps/gmapl-oligo.Tpo .deps/gmapl-oligo.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-segmentpos.o -MD -MP -MF .deps/gmapl-segmentpos.Tpo -c -o gmapl-segmentpos.o `test -f 'segmentpos.c' || echo './'`segmentpos.c mv -f .deps/gmap-stage3.Tpo .deps/gmap-stage3.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-chrnum.o -MD -MP -MF .deps/gmapl-chrnum.Tpo -c -o gmapl-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c chrom.c: In function 'Chrom_from_string': chrom.c:116:12: warning: comparison between pointer and zero character constant [-Wpointer-compare] while (p != '\0' && *p >= '0' && *p <= '9') { ^~ chrom.c:116:10: note: did you mean to dereference the pointer? while (p != '\0' && *p >= '0' && *p <= '9') { ^ mv -f .deps/gmap-gmap.Tpo .deps/gmap-gmap.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-uinttable.o -MD -MP -MF .deps/gmapl-uinttable.Tpo -c -o gmapl-uinttable.o `test -f 'uinttable.c' || echo './'`uinttable.c mv -f .deps/gmapl-segmentpos.Tpo .deps/gmapl-segmentpos.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-gregion.o -MD -MP -MF .deps/gmapl-gregion.Tpo -c -o gmapl-gregion.o `test -f 'gregion.c' || echo './'`gregion.c mv -f .deps/gmapl-indexdb_hr.Tpo .deps/gmapl-indexdb_hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-match.o -MD -MP -MF .deps/gmapl-match.Tpo -c -o gmapl-match.o `test -f 'match.c' || echo './'`match.c mv -f .deps/gmapl-uinttable.Tpo .deps/gmapl-uinttable.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-matchpool.o -MD -MP -MF .deps/gmapl-matchpool.Tpo -c -o gmapl-matchpool.o `test -f 'matchpool.c' || echo './'`matchpool.c mv -f .deps/gmapl-chrom.Tpo .deps/gmapl-chrom.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-diagnostic.o -MD -MP -MF .deps/gmapl-diagnostic.Tpo -c -o gmapl-diagnostic.o `test -f 'diagnostic.c' || echo './'`diagnostic.c mv -f .deps/gmapl-chrnum.Tpo .deps/gmapl-chrnum.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-stage1.o -MD -MP -MF .deps/gmapl-stage1.Tpo -c -o gmapl-stage1.o `test -f 'stage1.c' || echo './'`stage1.c mv -f .deps/gmapl-diagnostic.Tpo .deps/gmapl-diagnostic.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-diag.o -MD -MP -MF .deps/gmapl-diag.Tpo -c -o gmapl-diag.o `test -f 'diag.c' || echo './'`diag.c mv -f .deps/gmapl-indexdb.Tpo .deps/gmapl-indexdb.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-diagpool.o -MD -MP -MF .deps/gmapl-diagpool.Tpo -c -o gmapl-diagpool.o `test -f 'diagpool.c' || echo './'`diagpool.c mv -f .deps/gmapl-match.Tpo .deps/gmapl-match.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-cmet.o -MD -MP -MF .deps/gmapl-cmet.Tpo -c -o gmapl-cmet.o `test -f 'cmet.c' || echo './'`cmet.c mv -f .deps/gmapl-matchpool.Tpo .deps/gmapl-matchpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-atoi.o -MD -MP -MF .deps/gmapl-atoi.Tpo -c -o gmapl-atoi.o `test -f 'atoi.c' || echo './'`atoi.c mv -f .deps/gmapl-diagpool.Tpo .deps/gmapl-diagpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-orderstat.o -MD -MP -MF .deps/gmapl-orderstat.Tpo -c -o gmapl-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c mv -f .deps/gmapl-orderstat.Tpo .deps/gmapl-orderstat.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-oligoindex_hr.o -MD -MP -MF .deps/gmapl-oligoindex_hr.Tpo -c -o gmapl-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo './'`oligoindex_hr.c mv -f .deps/gmapl-gregion.Tpo .deps/gmapl-gregion.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-intron.o -MD -MP -MF .deps/gmapl-intron.Tpo -c -o gmapl-intron.o `test -f 'intron.c' || echo './'`intron.c mv -f .deps/gmapl-diag.Tpo .deps/gmapl-diag.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-maxent.o -MD -MP -MF .deps/gmapl-maxent.Tpo -c -o gmapl-maxent.o `test -f 'maxent.c' || echo './'`maxent.c mv -f .deps/gmapl-intron.Tpo .deps/gmapl-intron.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-maxent_hr.o -MD -MP -MF .deps/gmapl-maxent_hr.Tpo -c -o gmapl-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c mv -f .deps/gmapl-genome.Tpo .deps/gmapl-genome.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-pair.o -MD -MP -MF .deps/gmapl-pair.Tpo -c -o gmapl-pair.o `test -f 'pair.c' || echo './'`pair.c mv -f .deps/gmapl-cmet.Tpo .deps/gmapl-cmet.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-pairpool.o -MD -MP -MF .deps/gmapl-pairpool.Tpo -c -o gmapl-pairpool.o `test -f 'pairpool.c' || echo './'`pairpool.c mv -f .deps/gmapl-genome128_hr.Tpo .deps/gmapl-genome128_hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-cellpool.o -MD -MP -MF .deps/gmapl-cellpool.Tpo -c -o gmapl-cellpool.o `test -f 'cellpool.c' || echo './'`cellpool.c mv -f .deps/gmapl-cellpool.Tpo .deps/gmapl-cellpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-stage2.o -MD -MP -MF .deps/gmapl-stage2.Tpo -c -o gmapl-stage2.o `test -f 'stage2.c' || echo './'`stage2.c mv -f .deps/gmapl-atoi.Tpo .deps/gmapl-atoi.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-doublelist.o -MD -MP -MF .deps/gmapl-doublelist.Tpo -c -o gmapl-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c mv -f .deps/gmapl-genome_sites.Tpo .deps/gmapl-genome_sites.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-smooth.o -MD -MP -MF .deps/gmapl-smooth.Tpo -c -o gmapl-smooth.o `test -f 'smooth.c' || echo './'`smooth.c mv -f .deps/gmapl-doublelist.Tpo .deps/gmapl-doublelist.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-splicestringpool.o -MD -MP -MF .deps/gmapl-splicestringpool.Tpo -c -o gmapl-splicestringpool.o `test -f 'splicestringpool.c' || echo './'`splicestringpool.c mv -f .deps/gmapl-iit-read.Tpo .deps/gmapl-iit-read.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-splicetrie_build.o -MD -MP -MF .deps/gmapl-splicetrie_build.Tpo -c -o gmapl-splicetrie_build.o `test -f 'splicetrie_build.c' || echo './'`splicetrie_build.c mv -f .deps/gmapl-splicestringpool.Tpo .deps/gmapl-splicestringpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-splicetrie.o -MD -MP -MF .deps/gmapl-splicetrie.Tpo -c -o gmapl-splicetrie.o `test -f 'splicetrie.c' || echo './'`splicetrie.c mv -f .deps/gmapl-pairpool.Tpo .deps/gmapl-pairpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-boyer-moore.o -MD -MP -MF .deps/gmapl-boyer-moore.Tpo -c -o gmapl-boyer-moore.o `test -f 'boyer-moore.c' || echo './'`boyer-moore.c mv -f .deps/gmapl-smooth.Tpo .deps/gmapl-smooth.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-dynprog.o -MD -MP -MF .deps/gmapl-dynprog.Tpo -c -o gmapl-dynprog.o `test -f 'dynprog.c' || echo './'`dynprog.c mv -f .deps/gmapl-boyer-moore.Tpo .deps/gmapl-boyer-moore.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-dynprog_simd.o -MD -MP -MF .deps/gmapl-dynprog_simd.Tpo -c -o gmapl-dynprog_simd.o `test -f 'dynprog_simd.c' || echo './'`dynprog_simd.c mv -f .deps/gmapl-splicetrie.Tpo .deps/gmapl-splicetrie.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-dynprog_single.o -MD -MP -MF .deps/gmapl-dynprog_single.Tpo -c -o gmapl-dynprog_single.o `test -f 'dynprog_single.c' || echo './'`dynprog_single.c mv -f .deps/gmapl-dynprog_simd.Tpo .deps/gmapl-dynprog_simd.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-dynprog_genome.o -MD -MP -MF .deps/gmapl-dynprog_genome.Tpo -c -o gmapl-dynprog_genome.o `test -f 'dynprog_genome.c' || echo './'`dynprog_genome.c mv -f .deps/gmapl-stage1.Tpo .deps/gmapl-stage1.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-dynprog_cdna.o -MD -MP -MF .deps/gmapl-dynprog_cdna.Tpo -c -o gmapl-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo './'`dynprog_cdna.c mv -f .deps/gmapl-maxent.Tpo .deps/gmapl-maxent.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-dynprog_end.o -MD -MP -MF .deps/gmapl-dynprog_end.Tpo -c -o gmapl-dynprog_end.o `test -f 'dynprog_end.c' || echo './'`dynprog_end.c mv -f .deps/gmapl-dynprog_cdna.Tpo .deps/gmapl-dynprog_cdna.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-translation.o -MD -MP -MF .deps/gmapl-translation.Tpo -c -o gmapl-translation.o `test -f 'translation.c' || echo './'`translation.c mv -f .deps/gmapl-dynprog_single.Tpo .deps/gmapl-dynprog_single.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-pbinom.o -MD -MP -MF .deps/gmapl-pbinom.Tpo -c -o gmapl-pbinom.o `test -f 'pbinom.c' || echo './'`pbinom.c mv -f .deps/gmapl-dynprog.Tpo .deps/gmapl-dynprog.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-changepoint.o -MD -MP -MF .deps/gmapl-changepoint.Tpo -c -o gmapl-changepoint.o `test -f 'changepoint.c' || echo './'`changepoint.c mv -f .deps/gmapl-changepoint.Tpo .deps/gmapl-changepoint.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-stage3.o -MD -MP -MF .deps/gmapl-stage3.Tpo -c -o gmapl-stage3.o `test -f 'stage3.c' || echo './'`stage3.c mv -f .deps/gmapl-pbinom.Tpo .deps/gmapl-pbinom.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-request.o -MD -MP -MF .deps/gmapl-request.Tpo -c -o gmapl-request.o `test -f 'request.c' || echo './'`request.c mv -f .deps/gmapl-request.Tpo .deps/gmapl-request.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-result.o -MD -MP -MF .deps/gmapl-result.Tpo -c -o gmapl-result.o `test -f 'result.c' || echo './'`result.c mv -f .deps/gmapl-dynprog_genome.Tpo .deps/gmapl-dynprog_genome.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-output.o -MD -MP -MF .deps/gmapl-output.Tpo -c -o gmapl-output.o `test -f 'output.c' || echo './'`output.c mv -f .deps/gmapl-dynprog_end.Tpo .deps/gmapl-dynprog_end.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-inbuffer.o -MD -MP -MF .deps/gmapl-inbuffer.Tpo -c -o gmapl-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c mv -f .deps/gmapl-result.Tpo .deps/gmapl-result.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-samheader.o -MD -MP -MF .deps/gmapl-samheader.Tpo -c -o gmapl-samheader.o `test -f 'samheader.c' || echo './'`samheader.c mv -f .deps/gmapl-inbuffer.Tpo .deps/gmapl-inbuffer.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-outbuffer.o -MD -MP -MF .deps/gmapl-outbuffer.Tpo -c -o gmapl-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c mv -f .deps/gmapl-translation.Tpo .deps/gmapl-translation.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-chimera.o -MD -MP -MF .deps/gmapl-chimera.Tpo -c -o gmapl-chimera.o `test -f 'chimera.c' || echo './'`chimera.c mv -f .deps/gmapl-samheader.Tpo .deps/gmapl-samheader.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-datadir.o -MD -MP -MF .deps/gmapl-datadir.Tpo -c -o gmapl-datadir.o `test -f 'datadir.c' || echo './'`datadir.c mv -f .deps/gmapl-outbuffer.Tpo .deps/gmapl-outbuffer.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-getopt.o -MD -MP -MF .deps/gmapl-getopt.Tpo -c -o gmapl-getopt.o `test -f 'getopt.c' || echo './'`getopt.c mv -f .deps/gmapl-output.Tpo .deps/gmapl-output.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-getopt1.o -MD -MP -MF .deps/gmapl-getopt1.Tpo -c -o gmapl-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c mv -f .deps/gmapl-getopt1.Tpo .deps/gmapl-getopt1.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gmapl-gmap.o -MD -MP -MF .deps/gmapl-gmap.Tpo -c -o gmapl-gmap.o `test -f 'gmap.c' || echo './'`gmap.c mv -f .deps/gmapl-stage2.Tpo .deps/gmapl-stage2.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT get_genome-except.o -MD -MP -MF .deps/get_genome-except.Tpo -c -o get_genome-except.o `test -f 'except.c' || echo './'`except.c mv -f .deps/gmapl-splicetrie_build.Tpo .deps/gmapl-splicetrie_build.Po mv -f .deps/get_genome-except.Tpo .deps/get_genome-except.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT get_genome-assert.o -MD -MP -MF .deps/get_genome-assert.Tpo -c -o get_genome-assert.o `test -f 'assert.c' || echo './'`assert.c cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT get_genome-mem.o -MD -MP -MF .deps/get_genome-mem.Tpo -c -o get_genome-mem.o `test -f 'mem.c' || echo './'`mem.c mv -f .deps/get_genome-assert.Tpo .deps/get_genome-assert.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT get_genome-intlist.o -MD -MP -MF .deps/get_genome-intlist.Tpo -c -o get_genome-intlist.o `test -f 'intlist.c' || echo './'`intlist.c mv -f .deps/gmapl-datadir.Tpo .deps/gmapl-datadir.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT get_genome-list.o -MD -MP -MF .deps/get_genome-list.Tpo -c -o get_genome-list.o `test -f 'list.c' || echo './'`list.c mv -f .deps/get_genome-mem.Tpo .deps/get_genome-mem.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT get_genome-littleendian.o -MD -MP -MF .deps/get_genome-littleendian.Tpo -c -o get_genome-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c mv -f .deps/get_genome-littleendian.Tpo .deps/get_genome-littleendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT get_genome-bigendian.o -MD -MP -MF .deps/get_genome-bigendian.Tpo -c -o get_genome-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c mv -f .deps/gmapl-getopt.Tpo .deps/gmapl-getopt.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT get_genome-univinterval.o -MD -MP -MF .deps/get_genome-univinterval.Tpo -c -o get_genome-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c mv -f .deps/get_genome-list.Tpo .deps/get_genome-list.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT get_genome-interval.o -MD -MP -MF .deps/get_genome-interval.Tpo -c -o get_genome-interval.o `test -f 'interval.c' || echo './'`interval.c mv -f .deps/get_genome-univinterval.Tpo .deps/get_genome-univinterval.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT get_genome-uintlist.o -MD -MP -MF .deps/get_genome-uintlist.Tpo -c -o get_genome-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c mv -f .deps/gmapl-chimera.Tpo .deps/gmapl-chimera.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT get_genome-stopwatch.o -MD -MP -MF .deps/get_genome-stopwatch.Tpo -c -o get_genome-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c mv -f .deps/get_genome-interval.Tpo .deps/get_genome-interval.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT get_genome-access.o -MD -MP -MF .deps/get_genome-access.Tpo -c -o get_genome-access.o `test -f 'access.c' || echo './'`access.c mv -f .deps/get_genome-stopwatch.Tpo .deps/get_genome-stopwatch.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT get_genome-filestring.o -MD -MP -MF .deps/get_genome-filestring.Tpo -c -o get_genome-filestring.o `test -f 'filestring.c' || echo './'`filestring.c mv -f .deps/get_genome-intlist.Tpo .deps/get_genome-intlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT get_genome-iit-read-univ.o -MD -MP -MF .deps/get_genome-iit-read-univ.Tpo -c -o get_genome-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c mv -f .deps/get_genome-bigendian.Tpo .deps/get_genome-bigendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT get_genome-iit-read.o -MD -MP -MF .deps/get_genome-iit-read.Tpo -c -o get_genome-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c mv -f .deps/get_genome-uintlist.Tpo .deps/get_genome-uintlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT get_genome-md5.o -MD -MP -MF .deps/get_genome-md5.Tpo -c -o get_genome-md5.o `test -f 'md5.c' || echo './'`md5.c mv -f .deps/gmapl-maxent_hr.Tpo .deps/gmapl-maxent_hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT get_genome-bzip2.o -MD -MP -MF .deps/get_genome-bzip2.Tpo -c -o get_genome-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c mv -f .deps/get_genome-filestring.Tpo .deps/get_genome-filestring.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT get_genome-sequence.o -MD -MP -MF .deps/get_genome-sequence.Tpo -c -o get_genome-sequence.o `test -f 'sequence.c' || echo './'`sequence.c mv -f .deps/get_genome-bzip2.Tpo .deps/get_genome-bzip2.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT get_genome-genome.o -MD -MP -MF .deps/get_genome-genome.Tpo -c -o get_genome-genome.o `test -f 'genome.c' || echo './'`genome.c mv -f .deps/gmapl-pair.Tpo .deps/gmapl-pair.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT get_genome-genomicpos.o -MD -MP -MF .deps/get_genome-genomicpos.Tpo -c -o get_genome-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c mv -f .deps/get_genome-access.Tpo .deps/get_genome-access.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT get_genome-chrom.o -MD -MP -MF .deps/get_genome-chrom.Tpo -c -o get_genome-chrom.o `test -f 'chrom.c' || echo './'`chrom.c mv -f .deps/get_genome-md5.Tpo .deps/get_genome-md5.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT get_genome-chrnum.o -MD -MP -MF .deps/get_genome-chrnum.Tpo -c -o get_genome-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c chrom.c: In function 'Chrom_from_string': chrom.c:116:12: warning: comparison between pointer and zero character constant [-Wpointer-compare] while (p != '\0' && *p >= '0' && *p <= '9') { ^~ chrom.c:116:10: note: did you mean to dereference the pointer? while (p != '\0' && *p >= '0' && *p <= '9') { ^ mv -f .deps/get_genome-genomicpos.Tpo .deps/get_genome-genomicpos.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT get_genome-datadir.o -MD -MP -MF .deps/get_genome-datadir.Tpo -c -o get_genome-datadir.o `test -f 'datadir.c' || echo './'`datadir.c mv -f .deps/get_genome-chrom.Tpo .deps/get_genome-chrom.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT get_genome-parserange.o -MD -MP -MF .deps/get_genome-parserange.Tpo -c -o get_genome-parserange.o `test -f 'parserange.c' || echo './'`parserange.c mv -f .deps/get_genome-chrnum.Tpo .deps/get_genome-chrnum.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT get_genome-getopt.o -MD -MP -MF .deps/get_genome-getopt.Tpo -c -o get_genome-getopt.o `test -f 'getopt.c' || echo './'`getopt.c mv -f .deps/gmapl-oligoindex_hr.Tpo .deps/gmapl-oligoindex_hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT get_genome-getopt1.o -MD -MP -MF .deps/get_genome-getopt1.Tpo -c -o get_genome-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c mv -f .deps/get_genome-datadir.Tpo .deps/get_genome-datadir.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT get_genome-get-genome.o -MD -MP -MF .deps/get_genome-get-genome.Tpo -c -o get_genome-get-genome.o `test -f 'get-genome.c' || echo './'`get-genome.c mv -f .deps/get_genome-getopt1.Tpo .deps/get_genome-getopt1.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-except.o -MD -MP -MF .deps/gmapindex-except.Tpo -c -o gmapindex-except.o `test -f 'except.c' || echo './'`except.c mv -f .deps/gmapindex-except.Tpo .deps/gmapindex-except.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-assert.o -MD -MP -MF .deps/gmapindex-assert.Tpo -c -o gmapindex-assert.o `test -f 'assert.c' || echo './'`assert.c mv -f .deps/gmapindex-assert.Tpo .deps/gmapindex-assert.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-mem.o -MD -MP -MF .deps/gmapindex-mem.Tpo -c -o gmapindex-mem.o `test -f 'mem.c' || echo './'`mem.c mv -f .deps/get_genome-getopt.Tpo .deps/get_genome-getopt.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-intlist.o -MD -MP -MF .deps/gmapindex-intlist.Tpo -c -o gmapindex-intlist.o `test -f 'intlist.c' || echo './'`intlist.c mv -f .deps/get_genome-parserange.Tpo .deps/get_genome-parserange.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-list.o -MD -MP -MF .deps/gmapindex-list.Tpo -c -o gmapindex-list.o `test -f 'list.c' || echo './'`list.c mv -f .deps/get_genome-iit-read-univ.Tpo .deps/get_genome-iit-read-univ.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-littleendian.o -MD -MP -MF .deps/gmapindex-littleendian.Tpo -c -o gmapindex-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c mv -f .deps/gmapindex-mem.Tpo .deps/gmapindex-mem.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-bigendian.o -MD -MP -MF .deps/gmapindex-bigendian.Tpo -c -o gmapindex-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c mv -f .deps/gmapindex-littleendian.Tpo .deps/gmapindex-littleendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-univinterval.o -MD -MP -MF .deps/gmapindex-univinterval.Tpo -c -o gmapindex-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c mv -f .deps/gmapindex-intlist.Tpo .deps/gmapindex-intlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-interval.o -MD -MP -MF .deps/gmapindex-interval.Tpo -c -o gmapindex-interval.o `test -f 'interval.c' || echo './'`interval.c mv -f .deps/gmapindex-list.Tpo .deps/gmapindex-list.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-uintlist.o -MD -MP -MF .deps/gmapindex-uintlist.Tpo -c -o gmapindex-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c mv -f .deps/gmapindex-bigendian.Tpo .deps/gmapindex-bigendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-stopwatch.o -MD -MP -MF .deps/gmapindex-stopwatch.Tpo -c -o gmapindex-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c mv -f .deps/get_genome-sequence.Tpo .deps/get_genome-sequence.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-access.o -MD -MP -MF .deps/gmapindex-access.Tpo -c -o gmapindex-access.o `test -f 'access.c' || echo './'`access.c mv -f .deps/gmapindex-interval.Tpo .deps/gmapindex-interval.Po mv -f .deps/gmapindex-univinterval.Tpo .deps/gmapindex-univinterval.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-filestring.o -MD -MP -MF .deps/gmapindex-filestring.Tpo -c -o gmapindex-filestring.o `test -f 'filestring.c' || echo './'`filestring.c cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-iit-read-univ.o -MD -MP -MF .deps/gmapindex-iit-read-univ.Tpo -c -o gmapindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c mv -f .deps/gmapindex-stopwatch.Tpo .deps/gmapindex-stopwatch.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-iit-write-univ.o -MD -MP -MF .deps/gmapindex-iit-write-univ.Tpo -c -o gmapindex-iit-write-univ.o `test -f 'iit-write-univ.c' || echo './'`iit-write-univ.c mv -f .deps/gmapindex-uintlist.Tpo .deps/gmapindex-uintlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-iit-read.o -MD -MP -MF .deps/gmapindex-iit-read.Tpo -c -o gmapindex-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c mv -f .deps/gmapindex-access.Tpo .deps/gmapindex-access.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-md5.o -MD -MP -MF .deps/gmapindex-md5.Tpo -c -o gmapindex-md5.o `test -f 'md5.c' || echo './'`md5.c mv -f .deps/gmapindex-filestring.Tpo .deps/gmapindex-filestring.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-bzip2.o -MD -MP -MF .deps/gmapindex-bzip2.Tpo -c -o gmapindex-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c mv -f .deps/gmapindex-bzip2.Tpo .deps/gmapindex-bzip2.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-sequence.o -MD -MP -MF .deps/gmapindex-sequence.Tpo -c -o gmapindex-sequence.o `test -f 'sequence.c' || echo './'`sequence.c mv -f .deps/gmapindex-md5.Tpo .deps/gmapindex-md5.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-genome.o -MD -MP -MF .deps/gmapindex-genome.Tpo -c -o gmapindex-genome.o `test -f 'genome.c' || echo './'`genome.c mv -f .deps/get_genome-get-genome.Tpo .deps/get_genome-get-genome.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-genomicpos.o -MD -MP -MF .deps/gmapindex-genomicpos.Tpo -c -o gmapindex-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c mv -f .deps/gmapindex-genomicpos.Tpo .deps/gmapindex-genomicpos.Po mv -f .deps/gmapindex-iit-write-univ.Tpo .deps/gmapindex-iit-write-univ.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-compress-write.o -MD -MP -MF .deps/gmapindex-compress-write.Tpo -c -o gmapindex-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-genome-write.o -MD -MP -MF .deps/gmapindex-genome-write.Tpo -c -o gmapindex-genome-write.o `test -f 'genome-write.c' || echo './'`genome-write.c mv -f .deps/gmapl-gmap.Tpo .deps/gmapl-gmap.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-compress.o -MD -MP -MF .deps/gmapindex-compress.Tpo -c -o gmapindex-compress.o `test -f 'compress.c' || echo './'`compress.c mv -f .deps/gmapindex-compress.Tpo .deps/gmapindex-compress.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-popcount.o -MD -MP -MF .deps/gmapindex-popcount.Tpo -c -o gmapindex-popcount.o `test -f 'popcount.c' || echo './'`popcount.c mv -f .deps/gmapindex-iit-read-univ.Tpo .deps/gmapindex-iit-read-univ.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-genome128_hr.o -MD -MP -MF .deps/gmapindex-genome128_hr.Tpo -c -o gmapindex-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c mv -f .deps/gmapindex-genome-write.Tpo .deps/gmapindex-genome-write.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-bitpack64-read.o -MD -MP -MF .deps/gmapindex-bitpack64-read.Tpo -c -o gmapindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c mv -f .deps/gmapindex-sequence.Tpo .deps/gmapindex-sequence.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-bitpack64-readtwo.o -MD -MP -MF .deps/gmapindex-bitpack64-readtwo.Tpo -c -o gmapindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c mv -f .deps/get_genome-iit-read.Tpo .deps/get_genome-iit-read.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-bitpack64-access.o -MD -MP -MF .deps/gmapindex-bitpack64-access.Tpo -c -o gmapindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c mv -f .deps/gmapindex-compress-write.Tpo .deps/gmapindex-compress-write.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-bitpack64-write.o -MD -MP -MF .deps/gmapindex-bitpack64-write.Tpo -c -o gmapindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c mv -f .deps/gmapindex-popcount.Tpo .deps/gmapindex-popcount.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-indexdb.o -MD -MP -MF .deps/gmapindex-indexdb.Tpo -c -o gmapindex-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c mv -f .deps/gmapl-stage3.Tpo .deps/gmapl-stage3.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-indexdb-write.o -MD -MP -MF .deps/gmapindex-indexdb-write.Tpo -c -o gmapindex-indexdb-write.o `test -f 'indexdb-write.c' || echo './'`indexdb-write.c mv -f .deps/gmapindex-bitpack64-readtwo.Tpo .deps/gmapindex-bitpack64-readtwo.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-table.o -MD -MP -MF .deps/gmapindex-table.Tpo -c -o gmapindex-table.o `test -f 'table.c' || echo './'`table.c mv -f .deps/gmapindex-bitpack64-read.Tpo .deps/gmapindex-bitpack64-read.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-tableuint.o -MD -MP -MF .deps/gmapindex-tableuint.Tpo -c -o gmapindex-tableuint.o `test -f 'tableuint.c' || echo './'`tableuint.c mv -f .deps/gmapindex-bitpack64-access.Tpo .deps/gmapindex-bitpack64-access.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-tableuint8.o -MD -MP -MF .deps/gmapindex-tableuint8.Tpo -c -o gmapindex-tableuint8.o `test -f 'tableuint8.c' || echo './'`tableuint8.c mv -f .deps/gmapindex-tableuint.Tpo .deps/gmapindex-tableuint.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-chrom.o -MD -MP -MF .deps/gmapindex-chrom.Tpo -c -o gmapindex-chrom.o `test -f 'chrom.c' || echo './'`chrom.c mv -f .deps/gmapindex-table.Tpo .deps/gmapindex-table.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-segmentpos.o -MD -MP -MF .deps/gmapindex-segmentpos.Tpo -c -o gmapindex-segmentpos.o `test -f 'segmentpos.c' || echo './'`segmentpos.c chrom.c: In function 'Chrom_from_string': chrom.c:116:12: warning: comparison between pointer and zero character constant [-Wpointer-compare] while (p != '\0' && *p >= '0' && *p <= '9') { ^~ chrom.c:116:10: note: did you mean to dereference the pointer? while (p != '\0' && *p >= '0' && *p <= '9') { ^ mv -f .deps/gmapindex-chrom.Tpo .deps/gmapindex-chrom.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-saca-k.o -MD -MP -MF .deps/gmapindex-saca-k.Tpo -c -o gmapindex-saca-k.o `test -f 'saca-k.c' || echo './'`saca-k.c mv -f .deps/gmapindex-segmentpos.Tpo .deps/gmapindex-segmentpos.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-uint8list.o -MD -MP -MF .deps/gmapindex-uint8list.Tpo -c -o gmapindex-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c mv -f .deps/gmapindex-tableuint8.Tpo .deps/gmapindex-tableuint8.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-bytecoding.o -MD -MP -MF .deps/gmapindex-bytecoding.Tpo -c -o gmapindex-bytecoding.o `test -f 'bytecoding.c' || echo './'`bytecoding.c mv -f .deps/gmapindex-indexdb-write.Tpo .deps/gmapindex-indexdb-write.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-sarray-write.o -MD -MP -MF .deps/gmapindex-sarray-write.Tpo -c -o gmapindex-sarray-write.o `test -f 'sarray-write.c' || echo './'`sarray-write.c mv -f .deps/gmapindex-uint8list.Tpo .deps/gmapindex-uint8list.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT gmapindex-gmapindex.o -MD -MP -MF .deps/gmapindex-gmapindex.Tpo -c -o gmapindex-gmapindex.o `test -f 'gmapindex.c' || echo './'`gmapindex.c mv -f .deps/gmapindex-bytecoding.Tpo .deps/gmapindex-bytecoding.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_store-except.o -MD -MP -MF .deps/iit_store-except.Tpo -c -o iit_store-except.o `test -f 'except.c' || echo './'`except.c mv -f .deps/gmapindex-bitpack64-write.Tpo .deps/gmapindex-bitpack64-write.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_store-assert.o -MD -MP -MF .deps/iit_store-assert.Tpo -c -o iit_store-assert.o `test -f 'assert.c' || echo './'`assert.c mv -f .deps/gmapindex-indexdb.Tpo .deps/gmapindex-indexdb.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_store-mem.o -MD -MP -MF .deps/iit_store-mem.Tpo -c -o iit_store-mem.o `test -f 'mem.c' || echo './'`mem.c mv -f .deps/iit_store-assert.Tpo .deps/iit_store-assert.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_store-intlist.o -MD -MP -MF .deps/iit_store-intlist.Tpo -c -o iit_store-intlist.o `test -f 'intlist.c' || echo './'`intlist.c mv -f .deps/iit_store-except.Tpo .deps/iit_store-except.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_store-list.o -MD -MP -MF .deps/iit_store-list.Tpo -c -o iit_store-list.o `test -f 'list.c' || echo './'`list.c mv -f .deps/gmapindex-saca-k.Tpo .deps/gmapindex-saca-k.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_store-littleendian.o -MD -MP -MF .deps/iit_store-littleendian.Tpo -c -o iit_store-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c mv -f .deps/get_genome-genome.Tpo .deps/get_genome-genome.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_store-bigendian.o -MD -MP -MF .deps/iit_store-bigendian.Tpo -c -o iit_store-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c mv -f .deps/iit_store-littleendian.Tpo .deps/iit_store-littleendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_store-univinterval.o -MD -MP -MF .deps/iit_store-univinterval.Tpo -c -o iit_store-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c mv -f .deps/iit_store-mem.Tpo .deps/iit_store-mem.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_store-interval.o -MD -MP -MF .deps/iit_store-interval.Tpo -c -o iit_store-interval.o `test -f 'interval.c' || echo './'`interval.c mv -f .deps/iit_store-list.Tpo .deps/iit_store-list.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_store-uintlist.o -MD -MP -MF .deps/iit_store-uintlist.Tpo -c -o iit_store-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c mv -f .deps/gmapindex-sarray-write.Tpo .deps/gmapindex-sarray-write.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_store-stopwatch.o -MD -MP -MF .deps/iit_store-stopwatch.Tpo -c -o iit_store-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c mv -f .deps/iit_store-intlist.Tpo .deps/iit_store-intlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_store-access.o -MD -MP -MF .deps/iit_store-access.Tpo -c -o iit_store-access.o `test -f 'access.c' || echo './'`access.c mv -f .deps/iit_store-stopwatch.Tpo .deps/iit_store-stopwatch.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_store-doublelist.o -MD -MP -MF .deps/iit_store-doublelist.Tpo -c -o iit_store-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c mv -f .deps/iit_store-univinterval.Tpo .deps/iit_store-univinterval.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_store-iit-write-univ.o -MD -MP -MF .deps/iit_store-iit-write-univ.Tpo -c -o iit_store-iit-write-univ.o `test -f 'iit-write-univ.c' || echo './'`iit-write-univ.c mv -f .deps/iit_store-uintlist.Tpo .deps/iit_store-uintlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_store-iit-write.o -MD -MP -MF .deps/iit_store-iit-write.Tpo -c -o iit_store-iit-write.o `test -f 'iit-write.c' || echo './'`iit-write.c mv -f .deps/iit_store-doublelist.Tpo .deps/iit_store-doublelist.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_store-tableint.o -MD -MP -MF .deps/iit_store-tableint.Tpo -c -o iit_store-tableint.o `test -f 'tableint.c' || echo './'`tableint.c mv -f .deps/iit_store-interval.Tpo .deps/iit_store-interval.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_store-table.o -MD -MP -MF .deps/iit_store-table.Tpo -c -o iit_store-table.o `test -f 'table.c' || echo './'`table.c mv -f .deps/iit_store-bigendian.Tpo .deps/iit_store-bigendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_store-chrom.o -MD -MP -MF .deps/iit_store-chrom.Tpo -c -o iit_store-chrom.o `test -f 'chrom.c' || echo './'`chrom.c chrom.c: In function 'Chrom_from_string': chrom.c:116:12: warning: comparison between pointer and zero character constant [-Wpointer-compare] while (p != '\0' && *p >= '0' && *p <= '9') { ^~ chrom.c:116:10: note: did you mean to dereference the pointer? while (p != '\0' && *p >= '0' && *p <= '9') { ^ mv -f .deps/iit_store-access.Tpo .deps/iit_store-access.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_store-getopt.o -MD -MP -MF .deps/iit_store-getopt.Tpo -c -o iit_store-getopt.o `test -f 'getopt.c' || echo './'`getopt.c mv -f .deps/iit_store-table.Tpo .deps/iit_store-table.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_store-getopt1.o -MD -MP -MF .deps/iit_store-getopt1.Tpo -c -o iit_store-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c mv -f .deps/iit_store-iit-write-univ.Tpo .deps/iit_store-iit-write-univ.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_store-iit_store.o -MD -MP -MF .deps/iit_store-iit_store.Tpo -c -o iit_store-iit_store.o `test -f 'iit_store.c' || echo './'`iit_store.c mv -f .deps/iit_store-getopt1.Tpo .deps/iit_store-getopt1.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_get-except.o -MD -MP -MF .deps/iit_get-except.Tpo -c -o iit_get-except.o `test -f 'except.c' || echo './'`except.c mv -f .deps/iit_store-tableint.Tpo .deps/iit_store-tableint.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_get-assert.o -MD -MP -MF .deps/iit_get-assert.Tpo -c -o iit_get-assert.o `test -f 'assert.c' || echo './'`assert.c mv -f .deps/iit_get-assert.Tpo .deps/iit_get-assert.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_get-mem.o -MD -MP -MF .deps/iit_get-mem.Tpo -c -o iit_get-mem.o `test -f 'mem.c' || echo './'`mem.c mv -f .deps/iit_store-chrom.Tpo .deps/iit_store-chrom.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_get-intlist.o -MD -MP -MF .deps/iit_get-intlist.Tpo -c -o iit_get-intlist.o `test -f 'intlist.c' || echo './'`intlist.c mv -f .deps/iit_get-except.Tpo .deps/iit_get-except.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_get-list.o -MD -MP -MF .deps/iit_get-list.Tpo -c -o iit_get-list.o `test -f 'list.c' || echo './'`list.c mv -f .deps/iit_get-mem.Tpo .deps/iit_get-mem.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_get-littleendian.o -MD -MP -MF .deps/iit_get-littleendian.Tpo -c -o iit_get-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c mv -f .deps/gmapindex-iit-read.Tpo .deps/gmapindex-iit-read.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_get-bigendian.o -MD -MP -MF .deps/iit_get-bigendian.Tpo -c -o iit_get-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c mv -f .deps/iit_get-littleendian.Tpo .deps/iit_get-littleendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_get-univinterval.o -MD -MP -MF .deps/iit_get-univinterval.Tpo -c -o iit_get-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c mv -f .deps/iit_store-getopt.Tpo .deps/iit_store-getopt.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_get-interval.o -MD -MP -MF .deps/iit_get-interval.Tpo -c -o iit_get-interval.o `test -f 'interval.c' || echo './'`interval.c mv -f .deps/gmapindex-genome.Tpo .deps/gmapindex-genome.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_get-uintlist.o -MD -MP -MF .deps/iit_get-uintlist.Tpo -c -o iit_get-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c mv -f .deps/iit_get-bigendian.Tpo .deps/iit_get-bigendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_get-stopwatch.o -MD -MP -MF .deps/iit_get-stopwatch.Tpo -c -o iit_get-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c mv -f .deps/gmapindex-gmapindex.Tpo .deps/gmapindex-gmapindex.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_get-access.o -MD -MP -MF .deps/iit_get-access.Tpo -c -o iit_get-access.o `test -f 'access.c' || echo './'`access.c mv -f .deps/iit_store-iit-write.Tpo .deps/iit_store-iit-write.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_get-filestring.o -MD -MP -MF .deps/iit_get-filestring.Tpo -c -o iit_get-filestring.o `test -f 'filestring.c' || echo './'`filestring.c mv -f .deps/iit_get-uintlist.Tpo .deps/iit_get-uintlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_get-iit-read-univ.o -MD -MP -MF .deps/iit_get-iit-read-univ.Tpo -c -o iit_get-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c mv -f .deps/iit_get-interval.Tpo .deps/iit_get-interval.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_get-iit-read.o -MD -MP -MF .deps/iit_get-iit-read.Tpo -c -o iit_get-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c mv -f .deps/iit_get-univinterval.Tpo .deps/iit_get-univinterval.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_get-parserange.o -MD -MP -MF .deps/iit_get-parserange.Tpo -c -o iit_get-parserange.o `test -f 'parserange.c' || echo './'`parserange.c mv -f .deps/iit_get-stopwatch.Tpo .deps/iit_get-stopwatch.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_get-getopt.o -MD -MP -MF .deps/iit_get-getopt.Tpo -c -o iit_get-getopt.o `test -f 'getopt.c' || echo './'`getopt.c mv -f .deps/iit_store-iit_store.Tpo .deps/iit_store-iit_store.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_get-getopt1.o -MD -MP -MF .deps/iit_get-getopt1.Tpo -c -o iit_get-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c mv -f .deps/iit_get-list.Tpo .deps/iit_get-list.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_get-iit_get.o -MD -MP -MF .deps/iit_get-iit_get.Tpo -c -o iit_get-iit_get.o `test -f 'iit_get.c' || echo './'`iit_get.c mv -f .deps/iit_get-intlist.Tpo .deps/iit_get-intlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_dump-except.o -MD -MP -MF .deps/iit_dump-except.Tpo -c -o iit_dump-except.o `test -f 'except.c' || echo './'`except.c mv -f .deps/iit_get-getopt1.Tpo .deps/iit_get-getopt1.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_dump-assert.o -MD -MP -MF .deps/iit_dump-assert.Tpo -c -o iit_dump-assert.o `test -f 'assert.c' || echo './'`assert.c mv -f .deps/iit_dump-assert.Tpo .deps/iit_dump-assert.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_dump-mem.o -MD -MP -MF .deps/iit_dump-mem.Tpo -c -o iit_dump-mem.o `test -f 'mem.c' || echo './'`mem.c mv -f .deps/iit_get-access.Tpo .deps/iit_get-access.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_dump-littleendian.o -MD -MP -MF .deps/iit_dump-littleendian.Tpo -c -o iit_dump-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c mv -f .deps/iit_get-getopt.Tpo .deps/iit_get-getopt.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_dump-bigendian.o -MD -MP -MF .deps/iit_dump-bigendian.Tpo -c -o iit_dump-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c mv -f .deps/iit_dump-except.Tpo .deps/iit_dump-except.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_dump-intlist.o -MD -MP -MF .deps/iit_dump-intlist.Tpo -c -o iit_dump-intlist.o `test -f 'intlist.c' || echo './'`intlist.c mv -f .deps/iit_dump-mem.Tpo .deps/iit_dump-mem.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_dump-list.o -MD -MP -MF .deps/iit_dump-list.Tpo -c -o iit_dump-list.o `test -f 'list.c' || echo './'`list.c mv -f .deps/iit_get-filestring.Tpo .deps/iit_get-filestring.Po mv -f .deps/iit_dump-littleendian.Tpo .deps/iit_dump-littleendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_dump-univinterval.o -MD -MP -MF .deps/iit_dump-univinterval.Tpo -c -o iit_dump-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_dump-interval.o -MD -MP -MF .deps/iit_dump-interval.Tpo -c -o iit_dump-interval.o `test -f 'interval.c' || echo './'`interval.c mv -f .deps/iit_dump-interval.Tpo .deps/iit_dump-interval.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_dump-uintlist.o -MD -MP -MF .deps/iit_dump-uintlist.Tpo -c -o iit_dump-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c mv -f .deps/gmapindex-genome128_hr.Tpo .deps/gmapindex-genome128_hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_dump-stopwatch.o -MD -MP -MF .deps/iit_dump-stopwatch.Tpo -c -o iit_dump-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c mv -f .deps/iit_dump-stopwatch.Tpo .deps/iit_dump-stopwatch.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_dump-access.o -MD -MP -MF .deps/iit_dump-access.Tpo -c -o iit_dump-access.o `test -f 'access.c' || echo './'`access.c mv -f .deps/iit_get-parserange.Tpo .deps/iit_get-parserange.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_dump-filestring.o -MD -MP -MF .deps/iit_dump-filestring.Tpo -c -o iit_dump-filestring.o `test -f 'filestring.c' || echo './'`filestring.c mv -f .deps/iit_dump-list.Tpo .deps/iit_dump-list.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_dump-iit-read-univ.o -MD -MP -MF .deps/iit_dump-iit-read-univ.Tpo -c -o iit_dump-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c mv -f .deps/iit_dump-univinterval.Tpo .deps/iit_dump-univinterval.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_dump-iit-read.o -MD -MP -MF .deps/iit_dump-iit-read.Tpo -c -o iit_dump-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c mv -f .deps/iit_dump-bigendian.Tpo .deps/iit_dump-bigendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_dump-getopt.o -MD -MP -MF .deps/iit_dump-getopt.Tpo -c -o iit_dump-getopt.o `test -f 'getopt.c' || echo './'`getopt.c mv -f .deps/iit_dump-intlist.Tpo .deps/iit_dump-intlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_dump-getopt1.o -MD -MP -MF .deps/iit_dump-getopt1.Tpo -c -o iit_dump-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c mv -f .deps/iit_dump-getopt1.Tpo .deps/iit_dump-getopt1.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT iit_dump-iit_dump.o -MD -MP -MF .deps/iit_dump-iit_dump.Tpo -c -o iit_dump-iit_dump.o `test -f 'iit_dump.c' || echo './'`iit_dump.c mv -f .deps/iit_dump-access.Tpo .deps/iit_dump-access.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-except.o -MD -MP -MF .deps/gsnap-except.Tpo -c -o gsnap-except.o `test -f 'except.c' || echo './'`except.c mv -f .deps/gsnap-except.Tpo .deps/gsnap-except.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-assert.o -MD -MP -MF .deps/gsnap-assert.Tpo -c -o gsnap-assert.o `test -f 'assert.c' || echo './'`assert.c mv -f .deps/iit_dump-uintlist.Tpo .deps/iit_dump-uintlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-mem.o -MD -MP -MF .deps/gsnap-mem.Tpo -c -o gsnap-mem.o `test -f 'mem.c' || echo './'`mem.c mv -f .deps/iit_get-iit_get.Tpo .deps/iit_get-iit_get.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-intlist.o -MD -MP -MF .deps/gsnap-intlist.Tpo -c -o gsnap-intlist.o `test -f 'intlist.c' || echo './'`intlist.c mv -f .deps/gsnap-assert.Tpo .deps/gsnap-assert.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-list.o -MD -MP -MF .deps/gsnap-list.Tpo -c -o gsnap-list.o `test -f 'list.c' || echo './'`list.c mv -f .deps/iit_dump-filestring.Tpo .deps/iit_dump-filestring.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-littleendian.o -MD -MP -MF .deps/gsnap-littleendian.Tpo -c -o gsnap-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c mv -f .deps/gsnap-littleendian.Tpo .deps/gsnap-littleendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-bigendian.o -MD -MP -MF .deps/gsnap-bigendian.Tpo -c -o gsnap-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c mv -f .deps/iit_dump-getopt.Tpo .deps/iit_dump-getopt.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-univinterval.o -MD -MP -MF .deps/gsnap-univinterval.Tpo -c -o gsnap-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c mv -f .deps/iit_dump-iit_dump.Tpo .deps/iit_dump-iit_dump.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-interval.o -MD -MP -MF .deps/gsnap-interval.Tpo -c -o gsnap-interval.o `test -f 'interval.c' || echo './'`interval.c mv -f .deps/gsnap-mem.Tpo .deps/gsnap-mem.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-uintlist.o -MD -MP -MF .deps/gsnap-uintlist.Tpo -c -o gsnap-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c mv -f .deps/gsnap-list.Tpo .deps/gsnap-list.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-stopwatch.o -MD -MP -MF .deps/gsnap-stopwatch.Tpo -c -o gsnap-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c mv -f .deps/iit_get-iit-read-univ.Tpo .deps/iit_get-iit-read-univ.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-access.o -MD -MP -MF .deps/gsnap-access.Tpo -c -o gsnap-access.o `test -f 'access.c' || echo './'`access.c mv -f .deps/gsnap-intlist.Tpo .deps/gsnap-intlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-filestring.o -MD -MP -MF .deps/gsnap-filestring.Tpo -c -o gsnap-filestring.o `test -f 'filestring.c' || echo './'`filestring.c mv -f .deps/gsnap-interval.Tpo .deps/gsnap-interval.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-iit-read-univ.o -MD -MP -MF .deps/gsnap-iit-read-univ.Tpo -c -o gsnap-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c mv -f .deps/gsnap-stopwatch.Tpo .deps/gsnap-stopwatch.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-iit-read.o -MD -MP -MF .deps/gsnap-iit-read.Tpo -c -o gsnap-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c mv -f .deps/gsnap-uintlist.Tpo .deps/gsnap-uintlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-md5.o -MD -MP -MF .deps/gsnap-md5.Tpo -c -o gsnap-md5.o `test -f 'md5.c' || echo './'`md5.c mv -f .deps/gsnap-univinterval.Tpo .deps/gsnap-univinterval.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-bzip2.o -MD -MP -MF .deps/gsnap-bzip2.Tpo -c -o gsnap-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c mv -f .deps/gsnap-bzip2.Tpo .deps/gsnap-bzip2.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-sequence.o -MD -MP -MF .deps/gsnap-sequence.Tpo -c -o gsnap-sequence.o `test -f 'sequence.c' || echo './'`sequence.c mv -f .deps/gsnap-bigendian.Tpo .deps/gsnap-bigendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-reader.o -MD -MP -MF .deps/gsnap-reader.Tpo -c -o gsnap-reader.o `test -f 'reader.c' || echo './'`reader.c mv -f .deps/iit_dump-iit-read-univ.Tpo .deps/iit_dump-iit-read-univ.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-genomicpos.o -MD -MP -MF .deps/gsnap-genomicpos.Tpo -c -o gsnap-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c mv -f .deps/gsnap-genomicpos.Tpo .deps/gsnap-genomicpos.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-compress.o -MD -MP -MF .deps/gsnap-compress.Tpo -c -o gsnap-compress.o `test -f 'compress.c' || echo './'`compress.c mv -f .deps/gsnap-filestring.Tpo .deps/gsnap-filestring.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-genome.o -MD -MP -MF .deps/gsnap-genome.Tpo -c -o gsnap-genome.o `test -f 'genome.c' || echo './'`genome.c mv -f .deps/gsnap-reader.Tpo .deps/gsnap-reader.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-popcount.o -MD -MP -MF .deps/gsnap-popcount.Tpo -c -o gsnap-popcount.o `test -f 'popcount.c' || echo './'`popcount.c mv -f .deps/gsnap-md5.Tpo .deps/gsnap-md5.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-genome128_hr.o -MD -MP -MF .deps/gsnap-genome128_hr.Tpo -c -o gsnap-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c mv -f .deps/gsnap-access.Tpo .deps/gsnap-access.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-genome_sites.o -MD -MP -MF .deps/gsnap-genome_sites.Tpo -c -o gsnap-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c mv -f .deps/gsnap-compress.Tpo .deps/gsnap-compress.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-bitpack64-read.o -MD -MP -MF .deps/gsnap-bitpack64-read.Tpo -c -o gsnap-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c mv -f .deps/gsnap-iit-read-univ.Tpo .deps/gsnap-iit-read-univ.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-bitpack64-readtwo.o -MD -MP -MF .deps/gsnap-bitpack64-readtwo.Tpo -c -o gsnap-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c mv -f .deps/gsnap-popcount.Tpo .deps/gsnap-popcount.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-indexdb.o -MD -MP -MF .deps/gsnap-indexdb.Tpo -c -o gsnap-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c mv -f .deps/iit_get-iit-read.Tpo .deps/iit_get-iit-read.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-indexdb_hr.o -MD -MP -MF .deps/gsnap-indexdb_hr.Tpo -c -o gsnap-indexdb_hr.o `test -f 'indexdb_hr.c' || echo './'`indexdb_hr.c mv -f .deps/gsnap-sequence.Tpo .deps/gsnap-sequence.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-oligo.o -MD -MP -MF .deps/gsnap-oligo.Tpo -c -o gsnap-oligo.o `test -f 'oligo.c' || echo './'`oligo.c mv -f .deps/gsnap-oligo.Tpo .deps/gsnap-oligo.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-chrom.o -MD -MP -MF .deps/gsnap-chrom.Tpo -c -o gsnap-chrom.o `test -f 'chrom.c' || echo './'`chrom.c chrom.c: In function 'Chrom_from_string': chrom.c:116:12: warning: comparison between pointer and zero character constant [-Wpointer-compare] while (p != '\0' && *p >= '0' && *p <= '9') { ^~ chrom.c:116:10: note: did you mean to dereference the pointer? while (p != '\0' && *p >= '0' && *p <= '9') { ^ mv -f .deps/gsnap-bitpack64-read.Tpo .deps/gsnap-bitpack64-read.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-segmentpos.o -MD -MP -MF .deps/gsnap-segmentpos.Tpo -c -o gsnap-segmentpos.o `test -f 'segmentpos.c' || echo './'`segmentpos.c mv -f .deps/gsnap-indexdb.Tpo .deps/gsnap-indexdb.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-chrnum.o -MD -MP -MF .deps/gsnap-chrnum.Tpo -c -o gsnap-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c mv -f .deps/gsnap-chrnum.Tpo .deps/gsnap-chrnum.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-maxent_hr.o -MD -MP -MF .deps/gsnap-maxent_hr.Tpo -c -o gsnap-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c mv -f .deps/gsnap-chrom.Tpo .deps/gsnap-chrom.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-samprint.o -MD -MP -MF .deps/gsnap-samprint.Tpo -c -o gsnap-samprint.o `test -f 'samprint.c' || echo './'`samprint.c mv -f .deps/gsnap-bitpack64-readtwo.Tpo .deps/gsnap-bitpack64-readtwo.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-mapq.o -MD -MP -MF .deps/gsnap-mapq.Tpo -c -o gsnap-mapq.o `test -f 'mapq.c' || echo './'`mapq.c mv -f .deps/gsnap-indexdb_hr.Tpo .deps/gsnap-indexdb_hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-shortread.o -MD -MP -MF .deps/gsnap-shortread.Tpo -c -o gsnap-shortread.o `test -f 'shortread.c' || echo './'`shortread.c mv -f .deps/gsnap-mapq.Tpo .deps/gsnap-mapq.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-substring.o -MD -MP -MF .deps/gsnap-substring.Tpo -c -o gsnap-substring.o `test -f 'substring.c' || echo './'`substring.c mv -f .deps/gsnap-segmentpos.Tpo .deps/gsnap-segmentpos.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-junction.o -MD -MP -MF .deps/gsnap-junction.Tpo -c -o gsnap-junction.o `test -f 'junction.c' || echo './'`junction.c mv -f .deps/gsnap-junction.Tpo .deps/gsnap-junction.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-stage3hr.o -MD -MP -MF .deps/gsnap-stage3hr.Tpo -c -o gsnap-stage3hr.o `test -f 'stage3hr.c' || echo './'`stage3hr.c mv -f .deps/iit_dump-iit-read.Tpo .deps/iit_dump-iit-read.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-spanningelt.o -MD -MP -MF .deps/gsnap-spanningelt.Tpo -c -o gsnap-spanningelt.o `test -f 'spanningelt.c' || echo './'`spanningelt.c mv -f .deps/gsnap-spanningelt.Tpo .deps/gsnap-spanningelt.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-cmet.o -MD -MP -MF .deps/gsnap-cmet.Tpo -c -o gsnap-cmet.o `test -f 'cmet.c' || echo './'`cmet.c mv -f .deps/gsnap-iit-read.Tpo .deps/gsnap-iit-read.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-atoi.o -MD -MP -MF .deps/gsnap-atoi.Tpo -c -o gsnap-atoi.o `test -f 'atoi.c' || echo './'`atoi.c mv -f .deps/gsnap-genome_sites.Tpo .deps/gsnap-genome_sites.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-maxent.o -MD -MP -MF .deps/gsnap-maxent.Tpo -c -o gsnap-maxent.o `test -f 'maxent.c' || echo './'`maxent.c mv -f .deps/gsnap-genome.Tpo .deps/gsnap-genome.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-pair.o -MD -MP -MF .deps/gsnap-pair.Tpo -c -o gsnap-pair.o `test -f 'pair.c' || echo './'`pair.c mv -f .deps/gsnap-cmet.Tpo .deps/gsnap-cmet.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-pairpool.o -MD -MP -MF .deps/gsnap-pairpool.Tpo -c -o gsnap-pairpool.o `test -f 'pairpool.c' || echo './'`pairpool.c mv -f .deps/gsnap-atoi.Tpo .deps/gsnap-atoi.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-diag.o -MD -MP -MF .deps/gsnap-diag.Tpo -c -o gsnap-diag.o `test -f 'diag.c' || echo './'`diag.c mv -f .deps/gsnap-pairpool.Tpo .deps/gsnap-pairpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-diagpool.o -MD -MP -MF .deps/gsnap-diagpool.Tpo -c -o gsnap-diagpool.o `test -f 'diagpool.c' || echo './'`diagpool.c mv -f .deps/gsnap-samprint.Tpo .deps/gsnap-samprint.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-orderstat.o -MD -MP -MF .deps/gsnap-orderstat.Tpo -c -o gsnap-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c mv -f .deps/gsnap-diagpool.Tpo .deps/gsnap-diagpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-oligoindex_hr.o -MD -MP -MF .deps/gsnap-oligoindex_hr.Tpo -c -o gsnap-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo './'`oligoindex_hr.c mv -f .deps/gsnap-shortread.Tpo .deps/gsnap-shortread.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-cellpool.o -MD -MP -MF .deps/gsnap-cellpool.Tpo -c -o gsnap-cellpool.o `test -f 'cellpool.c' || echo './'`cellpool.c mv -f .deps/gsnap-orderstat.Tpo .deps/gsnap-orderstat.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-stage2.o -MD -MP -MF .deps/gsnap-stage2.Tpo -c -o gsnap-stage2.o `test -f 'stage2.c' || echo './'`stage2.c mv -f .deps/gsnap-genome128_hr.Tpo .deps/gsnap-genome128_hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-intron.o -MD -MP -MF .deps/gsnap-intron.Tpo -c -o gsnap-intron.o `test -f 'intron.c' || echo './'`intron.c mv -f .deps/gsnap-diag.Tpo .deps/gsnap-diag.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-boyer-moore.o -MD -MP -MF .deps/gsnap-boyer-moore.Tpo -c -o gsnap-boyer-moore.o `test -f 'boyer-moore.c' || echo './'`boyer-moore.c mv -f .deps/gsnap-cellpool.Tpo .deps/gsnap-cellpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-changepoint.o -MD -MP -MF .deps/gsnap-changepoint.Tpo -c -o gsnap-changepoint.o `test -f 'changepoint.c' || echo './'`changepoint.c mv -f .deps/gsnap-intron.Tpo .deps/gsnap-intron.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-pbinom.o -MD -MP -MF .deps/gsnap-pbinom.Tpo -c -o gsnap-pbinom.o `test -f 'pbinom.c' || echo './'`pbinom.c mv -f .deps/gsnap-changepoint.Tpo .deps/gsnap-changepoint.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-dynprog.o -MD -MP -MF .deps/gsnap-dynprog.Tpo -c -o gsnap-dynprog.o `test -f 'dynprog.c' || echo './'`dynprog.c mv -f .deps/gsnap-maxent.Tpo .deps/gsnap-maxent.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-dynprog_simd.o -MD -MP -MF .deps/gsnap-dynprog_simd.Tpo -c -o gsnap-dynprog_simd.o `test -f 'dynprog_simd.c' || echo './'`dynprog_simd.c mv -f .deps/gsnap-dynprog_simd.Tpo .deps/gsnap-dynprog_simd.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-dynprog_single.o -MD -MP -MF .deps/gsnap-dynprog_single.Tpo -c -o gsnap-dynprog_single.o `test -f 'dynprog_single.c' || echo './'`dynprog_single.c mv -f .deps/gsnap-pbinom.Tpo .deps/gsnap-pbinom.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-dynprog_genome.o -MD -MP -MF .deps/gsnap-dynprog_genome.Tpo -c -o gsnap-dynprog_genome.o `test -f 'dynprog_genome.c' || echo './'`dynprog_genome.c mv -f .deps/gsnap-boyer-moore.Tpo .deps/gsnap-boyer-moore.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-dynprog_cdna.o -MD -MP -MF .deps/gsnap-dynprog_cdna.Tpo -c -o gsnap-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo './'`dynprog_cdna.c mv -f .deps/gsnap-dynprog_single.Tpo .deps/gsnap-dynprog_single.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-dynprog_end.o -MD -MP -MF .deps/gsnap-dynprog_end.Tpo -c -o gsnap-dynprog_end.o `test -f 'dynprog_end.c' || echo './'`dynprog_end.c mv -f .deps/gsnap-dynprog_cdna.Tpo .deps/gsnap-dynprog_cdna.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-gbuffer.o -MD -MP -MF .deps/gsnap-gbuffer.Tpo -c -o gsnap-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c mv -f .deps/gsnap-gbuffer.Tpo .deps/gsnap-gbuffer.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-translation.o -MD -MP -MF .deps/gsnap-translation.Tpo -c -o gsnap-translation.o `test -f 'translation.c' || echo './'`translation.c mv -f .deps/gsnap-substring.Tpo .deps/gsnap-substring.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-doublelist.o -MD -MP -MF .deps/gsnap-doublelist.Tpo -c -o gsnap-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c mv -f .deps/gsnap-dynprog.Tpo .deps/gsnap-dynprog.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-smooth.o -MD -MP -MF .deps/gsnap-smooth.Tpo -c -o gsnap-smooth.o `test -f 'smooth.c' || echo './'`smooth.c mv -f .deps/gsnap-dynprog_genome.Tpo .deps/gsnap-dynprog_genome.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-chimera.o -MD -MP -MF .deps/gsnap-chimera.Tpo -c -o gsnap-chimera.o `test -f 'chimera.c' || echo './'`chimera.c mv -f .deps/gsnap-doublelist.Tpo .deps/gsnap-doublelist.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-stage3.o -MD -MP -MF .deps/gsnap-stage3.Tpo -c -o gsnap-stage3.o `test -f 'stage3.c' || echo './'`stage3.c mv -f .deps/gsnap-maxent_hr.Tpo .deps/gsnap-maxent_hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-splicestringpool.o -MD -MP -MF .deps/gsnap-splicestringpool.Tpo -c -o gsnap-splicestringpool.o `test -f 'splicestringpool.c' || echo './'`splicestringpool.c mv -f .deps/gsnap-smooth.Tpo .deps/gsnap-smooth.Po mv -f .deps/gsnap-splicestringpool.Tpo .deps/gsnap-splicestringpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-splicetrie_build.o -MD -MP -MF .deps/gsnap-splicetrie_build.Tpo -c -o gsnap-splicetrie_build.o `test -f 'splicetrie_build.c' || echo './'`splicetrie_build.c cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-splicetrie.o -MD -MP -MF .deps/gsnap-splicetrie.Tpo -c -o gsnap-splicetrie.o `test -f 'splicetrie.c' || echo './'`splicetrie.c mv -f .deps/gsnap-chimera.Tpo .deps/gsnap-chimera.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-splice.o -MD -MP -MF .deps/gsnap-splice.Tpo -c -o gsnap-splice.o `test -f 'splice.c' || echo './'`splice.c mv -f .deps/gsnap-dynprog_end.Tpo .deps/gsnap-dynprog_end.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-indel.o -MD -MP -MF .deps/gsnap-indel.Tpo -c -o gsnap-indel.o `test -f 'indel.c' || echo './'`indel.c mv -f .deps/gsnap-indel.Tpo .deps/gsnap-indel.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-bitpack64-access.o -MD -MP -MF .deps/gsnap-bitpack64-access.Tpo -c -o gsnap-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c mv -f .deps/gsnap-translation.Tpo .deps/gsnap-translation.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-bytecoding.o -MD -MP -MF .deps/gsnap-bytecoding.Tpo -c -o gsnap-bytecoding.o `test -f 'bytecoding.c' || echo './'`bytecoding.c mv -f .deps/gsnap-splicetrie.Tpo .deps/gsnap-splicetrie.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-univdiag.o -MD -MP -MF .deps/gsnap-univdiag.Tpo -c -o gsnap-univdiag.o `test -f 'univdiag.c' || echo './'`univdiag.c mv -f .deps/gsnap-stage2.Tpo .deps/gsnap-stage2.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-sarray-read.o -MD -MP -MF .deps/gsnap-sarray-read.Tpo -c -o gsnap-sarray-read.o `test -f 'sarray-read.c' || echo './'`sarray-read.c mv -f .deps/gsnap-univdiag.Tpo .deps/gsnap-univdiag.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-stage1hr.o -MD -MP -MF .deps/gsnap-stage1hr.Tpo -c -o gsnap-stage1hr.o `test -f 'stage1hr.c' || echo './'`stage1hr.c mv -f .deps/gsnap-bytecoding.Tpo .deps/gsnap-bytecoding.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-request.o -MD -MP -MF .deps/gsnap-request.Tpo -c -o gsnap-request.o `test -f 'request.c' || echo './'`request.c mv -f .deps/gsnap-request.Tpo .deps/gsnap-request.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-resulthr.o -MD -MP -MF .deps/gsnap-resulthr.Tpo -c -o gsnap-resulthr.o `test -f 'resulthr.c' || echo './'`resulthr.c mv -f .deps/gsnap-resulthr.Tpo .deps/gsnap-resulthr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-output.o -MD -MP -MF .deps/gsnap-output.Tpo -c -o gsnap-output.o `test -f 'output.c' || echo './'`output.c mv -f .deps/gsnap-output.Tpo .deps/gsnap-output.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-inbuffer.o -MD -MP -MF .deps/gsnap-inbuffer.Tpo -c -o gsnap-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c mv -f .deps/gsnap-bitpack64-access.Tpo .deps/gsnap-bitpack64-access.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-samheader.o -MD -MP -MF .deps/gsnap-samheader.Tpo -c -o gsnap-samheader.o `test -f 'samheader.c' || echo './'`samheader.c mv -f .deps/gsnap-inbuffer.Tpo .deps/gsnap-inbuffer.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-outbuffer.o -MD -MP -MF .deps/gsnap-outbuffer.Tpo -c -o gsnap-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c mv -f .deps/gsnap-samheader.Tpo .deps/gsnap-samheader.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-datadir.o -MD -MP -MF .deps/gsnap-datadir.Tpo -c -o gsnap-datadir.o `test -f 'datadir.c' || echo './'`datadir.c mv -f .deps/gsnap-outbuffer.Tpo .deps/gsnap-outbuffer.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-getopt.o -MD -MP -MF .deps/gsnap-getopt.Tpo -c -o gsnap-getopt.o `test -f 'getopt.c' || echo './'`getopt.c mv -f .deps/gsnap-datadir.Tpo .deps/gsnap-datadir.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-getopt1.o -MD -MP -MF .deps/gsnap-getopt1.Tpo -c -o gsnap-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c mv -f .deps/gsnap-getopt1.Tpo .deps/gsnap-getopt1.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT gsnap-gsnap.o -MD -MP -MF .deps/gsnap-gsnap.Tpo -c -o gsnap-gsnap.o `test -f 'gsnap.c' || echo './'`gsnap.c mv -f .deps/gsnap-splicetrie_build.Tpo .deps/gsnap-splicetrie_build.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-except.o -MD -MP -MF .deps/gsnapl-except.Tpo -c -o gsnapl-except.o `test -f 'except.c' || echo './'`except.c mv -f .deps/gsnapl-except.Tpo .deps/gsnapl-except.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-assert.o -MD -MP -MF .deps/gsnapl-assert.Tpo -c -o gsnapl-assert.o `test -f 'assert.c' || echo './'`assert.c mv -f .deps/gsnapl-assert.Tpo .deps/gsnapl-assert.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-mem.o -MD -MP -MF .deps/gsnapl-mem.Tpo -c -o gsnapl-mem.o `test -f 'mem.c' || echo './'`mem.c mv -f .deps/gsnapl-mem.Tpo .deps/gsnapl-mem.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-intlist.o -MD -MP -MF .deps/gsnapl-intlist.Tpo -c -o gsnapl-intlist.o `test -f 'intlist.c' || echo './'`intlist.c mv -f .deps/gsnap-splice.Tpo .deps/gsnap-splice.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-list.o -MD -MP -MF .deps/gsnapl-list.Tpo -c -o gsnapl-list.o `test -f 'list.c' || echo './'`list.c mv -f .deps/gsnap-getopt.Tpo .deps/gsnap-getopt.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-littleendian.o -MD -MP -MF .deps/gsnapl-littleendian.Tpo -c -o gsnapl-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c mv -f .deps/gsnap-pair.Tpo .deps/gsnap-pair.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-bigendian.o -MD -MP -MF .deps/gsnapl-bigendian.Tpo -c -o gsnapl-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c mv -f .deps/gsnapl-littleendian.Tpo .deps/gsnapl-littleendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-univinterval.o -MD -MP -MF .deps/gsnapl-univinterval.Tpo -c -o gsnapl-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c mv -f .deps/gsnapl-bigendian.Tpo .deps/gsnapl-bigendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-interval.o -MD -MP -MF .deps/gsnapl-interval.Tpo -c -o gsnapl-interval.o `test -f 'interval.c' || echo './'`interval.c mv -f .deps/gsnapl-univinterval.Tpo .deps/gsnapl-univinterval.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-uintlist.o -MD -MP -MF .deps/gsnapl-uintlist.Tpo -c -o gsnapl-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c mv -f .deps/gsnapl-intlist.Tpo .deps/gsnapl-intlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-uint8list.o -MD -MP -MF .deps/gsnapl-uint8list.Tpo -c -o gsnapl-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c mv -f .deps/gsnapl-list.Tpo .deps/gsnapl-list.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-stopwatch.o -MD -MP -MF .deps/gsnapl-stopwatch.Tpo -c -o gsnapl-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c mv -f .deps/gsnapl-stopwatch.Tpo .deps/gsnapl-stopwatch.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-access.o -MD -MP -MF .deps/gsnapl-access.Tpo -c -o gsnapl-access.o `test -f 'access.c' || echo './'`access.c mv -f .deps/gsnap-sarray-read.Tpo .deps/gsnap-sarray-read.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-filestring.o -MD -MP -MF .deps/gsnapl-filestring.Tpo -c -o gsnapl-filestring.o `test -f 'filestring.c' || echo './'`filestring.c mv -f .deps/gsnapl-uintlist.Tpo .deps/gsnapl-uintlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-iit-read-univ.o -MD -MP -MF .deps/gsnapl-iit-read-univ.Tpo -c -o gsnapl-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c mv -f .deps/gsnapl-interval.Tpo .deps/gsnapl-interval.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-iit-read.o -MD -MP -MF .deps/gsnapl-iit-read.Tpo -c -o gsnapl-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c mv -f .deps/gsnapl-uint8list.Tpo .deps/gsnapl-uint8list.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-md5.o -MD -MP -MF .deps/gsnapl-md5.Tpo -c -o gsnapl-md5.o `test -f 'md5.c' || echo './'`md5.c mv -f .deps/gsnapl-filestring.Tpo .deps/gsnapl-filestring.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-bzip2.o -MD -MP -MF .deps/gsnapl-bzip2.Tpo -c -o gsnapl-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c mv -f .deps/gsnapl-bzip2.Tpo .deps/gsnapl-bzip2.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-sequence.o -MD -MP -MF .deps/gsnapl-sequence.Tpo -c -o gsnapl-sequence.o `test -f 'sequence.c' || echo './'`sequence.c mv -f .deps/gsnapl-md5.Tpo .deps/gsnapl-md5.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-reader.o -MD -MP -MF .deps/gsnapl-reader.Tpo -c -o gsnapl-reader.o `test -f 'reader.c' || echo './'`reader.c mv -f .deps/gsnapl-access.Tpo .deps/gsnapl-access.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-genomicpos.o -MD -MP -MF .deps/gsnapl-genomicpos.Tpo -c -o gsnapl-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c mv -f .deps/gsnapl-reader.Tpo .deps/gsnapl-reader.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-compress.o -MD -MP -MF .deps/gsnapl-compress.Tpo -c -o gsnapl-compress.o `test -f 'compress.c' || echo './'`compress.c mv -f .deps/gsnapl-genomicpos.Tpo .deps/gsnapl-genomicpos.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-genome.o -MD -MP -MF .deps/gsnapl-genome.Tpo -c -o gsnapl-genome.o `test -f 'genome.c' || echo './'`genome.c mv -f .deps/gsnap-stage3hr.Tpo .deps/gsnap-stage3hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-popcount.o -MD -MP -MF .deps/gsnapl-popcount.Tpo -c -o gsnapl-popcount.o `test -f 'popcount.c' || echo './'`popcount.c mv -f .deps/gsnapl-compress.Tpo .deps/gsnapl-compress.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-genome128_hr.o -MD -MP -MF .deps/gsnapl-genome128_hr.Tpo -c -o gsnapl-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c mv -f .deps/gsnap-gsnap.Tpo .deps/gsnap-gsnap.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-genome_sites.o -MD -MP -MF .deps/gsnapl-genome_sites.Tpo -c -o gsnapl-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c mv -f .deps/gsnapl-iit-read-univ.Tpo .deps/gsnapl-iit-read-univ.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-bitpack64-read.o -MD -MP -MF .deps/gsnapl-bitpack64-read.Tpo -c -o gsnapl-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c mv -f .deps/gsnapl-popcount.Tpo .deps/gsnapl-popcount.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-bitpack64-readtwo.o -MD -MP -MF .deps/gsnapl-bitpack64-readtwo.Tpo -c -o gsnapl-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c mv -f .deps/gsnap-stage3.Tpo .deps/gsnap-stage3.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-indexdb.o -MD -MP -MF .deps/gsnapl-indexdb.Tpo -c -o gsnapl-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c mv -f .deps/gsnapl-sequence.Tpo .deps/gsnapl-sequence.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-indexdb_hr.o -MD -MP -MF .deps/gsnapl-indexdb_hr.Tpo -c -o gsnapl-indexdb_hr.o `test -f 'indexdb_hr.c' || echo './'`indexdb_hr.c mv -f .deps/gsnapl-bitpack64-readtwo.Tpo .deps/gsnapl-bitpack64-readtwo.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-oligo.o -MD -MP -MF .deps/gsnapl-oligo.Tpo -c -o gsnapl-oligo.o `test -f 'oligo.c' || echo './'`oligo.c mv -f .deps/gsnapl-bitpack64-read.Tpo .deps/gsnapl-bitpack64-read.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-chrom.o -MD -MP -MF .deps/gsnapl-chrom.Tpo -c -o gsnapl-chrom.o `test -f 'chrom.c' || echo './'`chrom.c chrom.c: In function 'Chrom_from_string': chrom.c:116:12: warning: comparison between pointer and zero character constant [-Wpointer-compare] while (p != '\0' && *p >= '0' && *p <= '9') { ^~ chrom.c:116:10: note: did you mean to dereference the pointer? while (p != '\0' && *p >= '0' && *p <= '9') { ^ mv -f .deps/gsnapl-indexdb_hr.Tpo .deps/gsnapl-indexdb_hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-segmentpos.o -MD -MP -MF .deps/gsnapl-segmentpos.Tpo -c -o gsnapl-segmentpos.o `test -f 'segmentpos.c' || echo './'`segmentpos.c mv -f .deps/gsnapl-chrom.Tpo .deps/gsnapl-chrom.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-chrnum.o -MD -MP -MF .deps/gsnapl-chrnum.Tpo -c -o gsnapl-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c mv -f .deps/gsnapl-chrnum.Tpo .deps/gsnapl-chrnum.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-maxent_hr.o -MD -MP -MF .deps/gsnapl-maxent_hr.Tpo -c -o gsnapl-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c mv -f .deps/gsnapl-oligo.Tpo .deps/gsnapl-oligo.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-samprint.o -MD -MP -MF .deps/gsnapl-samprint.Tpo -c -o gsnapl-samprint.o `test -f 'samprint.c' || echo './'`samprint.c mv -f .deps/gsnap-oligoindex_hr.Tpo .deps/gsnap-oligoindex_hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-mapq.o -MD -MP -MF .deps/gsnapl-mapq.Tpo -c -o gsnapl-mapq.o `test -f 'mapq.c' || echo './'`mapq.c mv -f .deps/gsnapl-segmentpos.Tpo .deps/gsnapl-segmentpos.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-shortread.o -MD -MP -MF .deps/gsnapl-shortread.Tpo -c -o gsnapl-shortread.o `test -f 'shortread.c' || echo './'`shortread.c mv -f .deps/gsnapl-mapq.Tpo .deps/gsnapl-mapq.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-substring.o -MD -MP -MF .deps/gsnapl-substring.Tpo -c -o gsnapl-substring.o `test -f 'substring.c' || echo './'`substring.c mv -f .deps/gsnapl-indexdb.Tpo .deps/gsnapl-indexdb.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-junction.o -MD -MP -MF .deps/gsnapl-junction.Tpo -c -o gsnapl-junction.o `test -f 'junction.c' || echo './'`junction.c mv -f .deps/gsnapl-junction.Tpo .deps/gsnapl-junction.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-stage3hr.o -MD -MP -MF .deps/gsnapl-stage3hr.Tpo -c -o gsnapl-stage3hr.o `test -f 'stage3hr.c' || echo './'`stage3hr.c mv -f .deps/gsnapl-iit-read.Tpo .deps/gsnapl-iit-read.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-spanningelt.o -MD -MP -MF .deps/gsnapl-spanningelt.Tpo -c -o gsnapl-spanningelt.o `test -f 'spanningelt.c' || echo './'`spanningelt.c mv -f .deps/gsnapl-spanningelt.Tpo .deps/gsnapl-spanningelt.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-cmet.o -MD -MP -MF .deps/gsnapl-cmet.Tpo -c -o gsnapl-cmet.o `test -f 'cmet.c' || echo './'`cmet.c mv -f .deps/gsnapl-genome_sites.Tpo .deps/gsnapl-genome_sites.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-atoi.o -MD -MP -MF .deps/gsnapl-atoi.Tpo -c -o gsnapl-atoi.o `test -f 'atoi.c' || echo './'`atoi.c mv -f .deps/gsnapl-genome.Tpo .deps/gsnapl-genome.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-maxent.o -MD -MP -MF .deps/gsnapl-maxent.Tpo -c -o gsnapl-maxent.o `test -f 'maxent.c' || echo './'`maxent.c mv -f .deps/gsnapl-cmet.Tpo .deps/gsnapl-cmet.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-pair.o -MD -MP -MF .deps/gsnapl-pair.Tpo -c -o gsnapl-pair.o `test -f 'pair.c' || echo './'`pair.c mv -f .deps/gsnapl-shortread.Tpo .deps/gsnapl-shortread.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-pairpool.o -MD -MP -MF .deps/gsnapl-pairpool.Tpo -c -o gsnapl-pairpool.o `test -f 'pairpool.c' || echo './'`pairpool.c mv -f .deps/gsnapl-atoi.Tpo .deps/gsnapl-atoi.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-diag.o -MD -MP -MF .deps/gsnapl-diag.Tpo -c -o gsnapl-diag.o `test -f 'diag.c' || echo './'`diag.c mv -f .deps/gsnapl-genome128_hr.Tpo .deps/gsnapl-genome128_hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-diagpool.o -MD -MP -MF .deps/gsnapl-diagpool.Tpo -c -o gsnapl-diagpool.o `test -f 'diagpool.c' || echo './'`diagpool.c mv -f .deps/gsnapl-substring.Tpo .deps/gsnapl-substring.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-orderstat.o -MD -MP -MF .deps/gsnapl-orderstat.Tpo -c -o gsnapl-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c mv -f .deps/gsnapl-diagpool.Tpo .deps/gsnapl-diagpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-oligoindex_hr.o -MD -MP -MF .deps/gsnapl-oligoindex_hr.Tpo -c -o gsnapl-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo './'`oligoindex_hr.c mv -f .deps/gsnapl-diag.Tpo .deps/gsnapl-diag.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-cellpool.o -MD -MP -MF .deps/gsnapl-cellpool.Tpo -c -o gsnapl-cellpool.o `test -f 'cellpool.c' || echo './'`cellpool.c mv -f .deps/gsnapl-maxent.Tpo .deps/gsnapl-maxent.Po mv -f .deps/gsnapl-pairpool.Tpo .deps/gsnapl-pairpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-stage2.o -MD -MP -MF .deps/gsnapl-stage2.Tpo -c -o gsnapl-stage2.o `test -f 'stage2.c' || echo './'`stage2.c cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-intron.o -MD -MP -MF .deps/gsnapl-intron.Tpo -c -o gsnapl-intron.o `test -f 'intron.c' || echo './'`intron.c mv -f .deps/gsnapl-orderstat.Tpo .deps/gsnapl-orderstat.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-boyer-moore.o -MD -MP -MF .deps/gsnapl-boyer-moore.Tpo -c -o gsnapl-boyer-moore.o `test -f 'boyer-moore.c' || echo './'`boyer-moore.c mv -f .deps/gsnapl-cellpool.Tpo .deps/gsnapl-cellpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-changepoint.o -MD -MP -MF .deps/gsnapl-changepoint.Tpo -c -o gsnapl-changepoint.o `test -f 'changepoint.c' || echo './'`changepoint.c mv -f .deps/gsnapl-intron.Tpo .deps/gsnapl-intron.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-pbinom.o -MD -MP -MF .deps/gsnapl-pbinom.Tpo -c -o gsnapl-pbinom.o `test -f 'pbinom.c' || echo './'`pbinom.c mv -f .deps/gsnapl-boyer-moore.Tpo .deps/gsnapl-boyer-moore.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-dynprog.o -MD -MP -MF .deps/gsnapl-dynprog.Tpo -c -o gsnapl-dynprog.o `test -f 'dynprog.c' || echo './'`dynprog.c mv -f .deps/gsnapl-samprint.Tpo .deps/gsnapl-samprint.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-dynprog_simd.o -MD -MP -MF .deps/gsnapl-dynprog_simd.Tpo -c -o gsnapl-dynprog_simd.o `test -f 'dynprog_simd.c' || echo './'`dynprog_simd.c mv -f .deps/gsnapl-changepoint.Tpo .deps/gsnapl-changepoint.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-dynprog_single.o -MD -MP -MF .deps/gsnapl-dynprog_single.Tpo -c -o gsnapl-dynprog_single.o `test -f 'dynprog_single.c' || echo './'`dynprog_single.c mv -f .deps/gsnapl-dynprog_simd.Tpo .deps/gsnapl-dynprog_simd.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-dynprog_genome.o -MD -MP -MF .deps/gsnapl-dynprog_genome.Tpo -c -o gsnapl-dynprog_genome.o `test -f 'dynprog_genome.c' || echo './'`dynprog_genome.c mv -f .deps/gsnapl-pbinom.Tpo .deps/gsnapl-pbinom.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-dynprog_cdna.o -MD -MP -MF .deps/gsnapl-dynprog_cdna.Tpo -c -o gsnapl-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo './'`dynprog_cdna.c mv -f .deps/gsnapl-maxent_hr.Tpo .deps/gsnapl-maxent_hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-dynprog_end.o -MD -MP -MF .deps/gsnapl-dynprog_end.Tpo -c -o gsnapl-dynprog_end.o `test -f 'dynprog_end.c' || echo './'`dynprog_end.c mv -f .deps/gsnapl-dynprog_single.Tpo .deps/gsnapl-dynprog_single.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-gbuffer.o -MD -MP -MF .deps/gsnapl-gbuffer.Tpo -c -o gsnapl-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c mv -f .deps/gsnapl-dynprog_cdna.Tpo .deps/gsnapl-dynprog_cdna.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-translation.o -MD -MP -MF .deps/gsnapl-translation.Tpo -c -o gsnapl-translation.o `test -f 'translation.c' || echo './'`translation.c mv -f .deps/gsnapl-dynprog.Tpo .deps/gsnapl-dynprog.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-doublelist.o -MD -MP -MF .deps/gsnapl-doublelist.Tpo -c -o gsnapl-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c mv -f .deps/gsnapl-gbuffer.Tpo .deps/gsnapl-gbuffer.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-smooth.o -MD -MP -MF .deps/gsnapl-smooth.Tpo -c -o gsnapl-smooth.o `test -f 'smooth.c' || echo './'`smooth.c mv -f .deps/gsnapl-doublelist.Tpo .deps/gsnapl-doublelist.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-chimera.o -MD -MP -MF .deps/gsnapl-chimera.Tpo -c -o gsnapl-chimera.o `test -f 'chimera.c' || echo './'`chimera.c mv -f .deps/gsnapl-smooth.Tpo .deps/gsnapl-smooth.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-stage3.o -MD -MP -MF .deps/gsnapl-stage3.Tpo -c -o gsnapl-stage3.o `test -f 'stage3.c' || echo './'`stage3.c mv -f .deps/gsnapl-dynprog_genome.Tpo .deps/gsnapl-dynprog_genome.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-splicestringpool.o -MD -MP -MF .deps/gsnapl-splicestringpool.Tpo -c -o gsnapl-splicestringpool.o `test -f 'splicestringpool.c' || echo './'`splicestringpool.c mv -f .deps/gsnapl-chimera.Tpo .deps/gsnapl-chimera.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-splicetrie_build.o -MD -MP -MF .deps/gsnapl-splicetrie_build.Tpo -c -o gsnapl-splicetrie_build.o `test -f 'splicetrie_build.c' || echo './'`splicetrie_build.c mv -f .deps/gsnapl-stage2.Tpo .deps/gsnapl-stage2.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-splicetrie.o -MD -MP -MF .deps/gsnapl-splicetrie.Tpo -c -o gsnapl-splicetrie.o `test -f 'splicetrie.c' || echo './'`splicetrie.c mv -f .deps/gsnapl-dynprog_end.Tpo .deps/gsnapl-dynprog_end.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-splice.o -MD -MP -MF .deps/gsnapl-splice.Tpo -c -o gsnapl-splice.o `test -f 'splice.c' || echo './'`splice.c mv -f .deps/gsnapl-splicestringpool.Tpo .deps/gsnapl-splicestringpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-indel.o -MD -MP -MF .deps/gsnapl-indel.Tpo -c -o gsnapl-indel.o `test -f 'indel.c' || echo './'`indel.c mv -f .deps/gsnapl-indel.Tpo .deps/gsnapl-indel.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-bitpack64-access.o -MD -MP -MF .deps/gsnapl-bitpack64-access.Tpo -c -o gsnapl-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c mv -f .deps/gsnapl-translation.Tpo .deps/gsnapl-translation.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-stage1hr.o -MD -MP -MF .deps/gsnapl-stage1hr.Tpo -c -o gsnapl-stage1hr.o `test -f 'stage1hr.c' || echo './'`stage1hr.c mv -f .deps/gsnapl-splicetrie.Tpo .deps/gsnapl-splicetrie.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-request.o -MD -MP -MF .deps/gsnapl-request.Tpo -c -o gsnapl-request.o `test -f 'request.c' || echo './'`request.c mv -f .deps/gsnapl-request.Tpo .deps/gsnapl-request.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-resulthr.o -MD -MP -MF .deps/gsnapl-resulthr.Tpo -c -o gsnapl-resulthr.o `test -f 'resulthr.c' || echo './'`resulthr.c mv -f .deps/gsnapl-bitpack64-access.Tpo .deps/gsnapl-bitpack64-access.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-output.o -MD -MP -MF .deps/gsnapl-output.Tpo -c -o gsnapl-output.o `test -f 'output.c' || echo './'`output.c mv -f .deps/gsnapl-resulthr.Tpo .deps/gsnapl-resulthr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-inbuffer.o -MD -MP -MF .deps/gsnapl-inbuffer.Tpo -c -o gsnapl-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c mv -f .deps/gsnapl-output.Tpo .deps/gsnapl-output.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-samheader.o -MD -MP -MF .deps/gsnapl-samheader.Tpo -c -o gsnapl-samheader.o `test -f 'samheader.c' || echo './'`samheader.c mv -f .deps/gsnapl-inbuffer.Tpo .deps/gsnapl-inbuffer.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-outbuffer.o -MD -MP -MF .deps/gsnapl-outbuffer.Tpo -c -o gsnapl-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c mv -f .deps/gsnapl-samheader.Tpo .deps/gsnapl-samheader.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-datadir.o -MD -MP -MF .deps/gsnapl-datadir.Tpo -c -o gsnapl-datadir.o `test -f 'datadir.c' || echo './'`datadir.c mv -f .deps/gsnapl-pair.Tpo .deps/gsnapl-pair.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-getopt.o -MD -MP -MF .deps/gsnapl-getopt.Tpo -c -o gsnapl-getopt.o `test -f 'getopt.c' || echo './'`getopt.c mv -f .deps/gsnapl-outbuffer.Tpo .deps/gsnapl-outbuffer.Po mv -f .deps/gsnap-stage1hr.Tpo .deps/gsnap-stage1hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-getopt1.o -MD -MP -MF .deps/gsnapl-getopt1.Tpo -c -o gsnapl-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT gsnapl-gsnap.o -MD -MP -MF .deps/gsnapl-gsnap.Tpo -c -o gsnapl-gsnap.o `test -f 'gsnap.c' || echo './'`gsnap.c mv -f .deps/gsnapl-getopt1.Tpo .deps/gsnapl-getopt1.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-except.o -MD -MP -MF .deps/uniqscan-except.Tpo -c -o uniqscan-except.o `test -f 'except.c' || echo './'`except.c mv -f .deps/gsnapl-datadir.Tpo .deps/gsnapl-datadir.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-assert.o -MD -MP -MF .deps/uniqscan-assert.Tpo -c -o uniqscan-assert.o `test -f 'assert.c' || echo './'`assert.c mv -f .deps/uniqscan-assert.Tpo .deps/uniqscan-assert.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-mem.o -MD -MP -MF .deps/uniqscan-mem.Tpo -c -o uniqscan-mem.o `test -f 'mem.c' || echo './'`mem.c mv -f .deps/gsnapl-splice.Tpo .deps/gsnapl-splice.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-intlist.o -MD -MP -MF .deps/uniqscan-intlist.Tpo -c -o uniqscan-intlist.o `test -f 'intlist.c' || echo './'`intlist.c mv -f .deps/uniqscan-except.Tpo .deps/uniqscan-except.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-list.o -MD -MP -MF .deps/uniqscan-list.Tpo -c -o uniqscan-list.o `test -f 'list.c' || echo './'`list.c mv -f .deps/gsnapl-getopt.Tpo .deps/gsnapl-getopt.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-littleendian.o -MD -MP -MF .deps/uniqscan-littleendian.Tpo -c -o uniqscan-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c mv -f .deps/uniqscan-littleendian.Tpo .deps/uniqscan-littleendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-bigendian.o -MD -MP -MF .deps/uniqscan-bigendian.Tpo -c -o uniqscan-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c mv -f .deps/gsnapl-stage3hr.Tpo .deps/gsnapl-stage3hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-univinterval.o -MD -MP -MF .deps/uniqscan-univinterval.Tpo -c -o uniqscan-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c mv -f .deps/uniqscan-mem.Tpo .deps/uniqscan-mem.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-interval.o -MD -MP -MF .deps/uniqscan-interval.Tpo -c -o uniqscan-interval.o `test -f 'interval.c' || echo './'`interval.c mv -f .deps/uniqscan-list.Tpo .deps/uniqscan-list.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-uintlist.o -MD -MP -MF .deps/uniqscan-uintlist.Tpo -c -o uniqscan-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c mv -f .deps/gsnapl-splicetrie_build.Tpo .deps/gsnapl-splicetrie_build.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-stopwatch.o -MD -MP -MF .deps/uniqscan-stopwatch.Tpo -c -o uniqscan-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c mv -f .deps/uniqscan-intlist.Tpo .deps/uniqscan-intlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-access.o -MD -MP -MF .deps/uniqscan-access.Tpo -c -o uniqscan-access.o `test -f 'access.c' || echo './'`access.c mv -f .deps/uniqscan-univinterval.Tpo .deps/uniqscan-univinterval.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-filestring.o -MD -MP -MF .deps/uniqscan-filestring.Tpo -c -o uniqscan-filestring.o `test -f 'filestring.c' || echo './'`filestring.c mv -f .deps/uniqscan-bigendian.Tpo .deps/uniqscan-bigendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-iit-read-univ.o -MD -MP -MF .deps/uniqscan-iit-read-univ.Tpo -c -o uniqscan-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c mv -f .deps/uniqscan-stopwatch.Tpo .deps/uniqscan-stopwatch.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-iit-read.o -MD -MP -MF .deps/uniqscan-iit-read.Tpo -c -o uniqscan-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c mv -f .deps/uniqscan-uintlist.Tpo .deps/uniqscan-uintlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-md5.o -MD -MP -MF .deps/uniqscan-md5.Tpo -c -o uniqscan-md5.o `test -f 'md5.c' || echo './'`md5.c mv -f .deps/uniqscan-interval.Tpo .deps/uniqscan-interval.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-bzip2.o -MD -MP -MF .deps/uniqscan-bzip2.Tpo -c -o uniqscan-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c mv -f .deps/uniqscan-filestring.Tpo .deps/uniqscan-filestring.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-sequence.o -MD -MP -MF .deps/uniqscan-sequence.Tpo -c -o uniqscan-sequence.o `test -f 'sequence.c' || echo './'`sequence.c mv -f .deps/uniqscan-bzip2.Tpo .deps/uniqscan-bzip2.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-reader.o -MD -MP -MF .deps/uniqscan-reader.Tpo -c -o uniqscan-reader.o `test -f 'reader.c' || echo './'`reader.c mv -f .deps/uniqscan-md5.Tpo .deps/uniqscan-md5.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-genomicpos.o -MD -MP -MF .deps/uniqscan-genomicpos.Tpo -c -o uniqscan-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c mv -f .deps/uniqscan-reader.Tpo .deps/uniqscan-reader.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-compress.o -MD -MP -MF .deps/uniqscan-compress.Tpo -c -o uniqscan-compress.o `test -f 'compress.c' || echo './'`compress.c mv -f .deps/uniqscan-genomicpos.Tpo .deps/uniqscan-genomicpos.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-genome.o -MD -MP -MF .deps/uniqscan-genome.Tpo -c -o uniqscan-genome.o `test -f 'genome.c' || echo './'`genome.c mv -f .deps/uniqscan-access.Tpo .deps/uniqscan-access.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-popcount.o -MD -MP -MF .deps/uniqscan-popcount.Tpo -c -o uniqscan-popcount.o `test -f 'popcount.c' || echo './'`popcount.c mv -f .deps/gsnapl-oligoindex_hr.Tpo .deps/gsnapl-oligoindex_hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-genome128_hr.o -MD -MP -MF .deps/uniqscan-genome128_hr.Tpo -c -o uniqscan-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c mv -f .deps/uniqscan-compress.Tpo .deps/uniqscan-compress.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-genome_sites.o -MD -MP -MF .deps/uniqscan-genome_sites.Tpo -c -o uniqscan-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c mv -f .deps/uniqscan-iit-read-univ.Tpo .deps/uniqscan-iit-read-univ.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-bitpack64-read.o -MD -MP -MF .deps/uniqscan-bitpack64-read.Tpo -c -o uniqscan-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c mv -f .deps/uniqscan-popcount.Tpo .deps/uniqscan-popcount.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-bitpack64-readtwo.o -MD -MP -MF .deps/uniqscan-bitpack64-readtwo.Tpo -c -o uniqscan-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c mv -f .deps/gsnapl-stage3.Tpo .deps/gsnapl-stage3.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-indexdb.o -MD -MP -MF .deps/uniqscan-indexdb.Tpo -c -o uniqscan-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c mv -f .deps/uniqscan-sequence.Tpo .deps/uniqscan-sequence.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-indexdb_hr.o -MD -MP -MF .deps/uniqscan-indexdb_hr.Tpo -c -o uniqscan-indexdb_hr.o `test -f 'indexdb_hr.c' || echo './'`indexdb_hr.c mv -f .deps/uniqscan-bitpack64-readtwo.Tpo .deps/uniqscan-bitpack64-readtwo.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-oligo.o -MD -MP -MF .deps/uniqscan-oligo.Tpo -c -o uniqscan-oligo.o `test -f 'oligo.c' || echo './'`oligo.c mv -f .deps/gsnapl-gsnap.Tpo .deps/gsnapl-gsnap.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-chrom.o -MD -MP -MF .deps/uniqscan-chrom.Tpo -c -o uniqscan-chrom.o `test -f 'chrom.c' || echo './'`chrom.c chrom.c: In function 'Chrom_from_string': chrom.c:116:12: warning: comparison between pointer and zero character constant [-Wpointer-compare] while (p != '\0' && *p >= '0' && *p <= '9') { ^~ chrom.c:116:10: note: did you mean to dereference the pointer? while (p != '\0' && *p >= '0' && *p <= '9') { ^ mv -f .deps/uniqscan-bitpack64-read.Tpo .deps/uniqscan-bitpack64-read.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-segmentpos.o -MD -MP -MF .deps/uniqscan-segmentpos.Tpo -c -o uniqscan-segmentpos.o `test -f 'segmentpos.c' || echo './'`segmentpos.c mv -f .deps/uniqscan-chrom.Tpo .deps/uniqscan-chrom.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-chrnum.o -MD -MP -MF .deps/uniqscan-chrnum.Tpo -c -o uniqscan-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c mv -f .deps/uniqscan-oligo.Tpo .deps/uniqscan-oligo.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-maxent_hr.o -MD -MP -MF .deps/uniqscan-maxent_hr.Tpo -c -o uniqscan-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c mv -f .deps/uniqscan-indexdb_hr.Tpo .deps/uniqscan-indexdb_hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-mapq.o -MD -MP -MF .deps/uniqscan-mapq.Tpo -c -o uniqscan-mapq.o `test -f 'mapq.c' || echo './'`mapq.c mv -f .deps/uniqscan-chrnum.Tpo .deps/uniqscan-chrnum.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-shortread.o -MD -MP -MF .deps/uniqscan-shortread.Tpo -c -o uniqscan-shortread.o `test -f 'shortread.c' || echo './'`shortread.c mv -f .deps/uniqscan-segmentpos.Tpo .deps/uniqscan-segmentpos.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-substring.o -MD -MP -MF .deps/uniqscan-substring.Tpo -c -o uniqscan-substring.o `test -f 'substring.c' || echo './'`substring.c mv -f .deps/uniqscan-mapq.Tpo .deps/uniqscan-mapq.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-junction.o -MD -MP -MF .deps/uniqscan-junction.Tpo -c -o uniqscan-junction.o `test -f 'junction.c' || echo './'`junction.c mv -f .deps/uniqscan-indexdb.Tpo .deps/uniqscan-indexdb.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-stage3hr.o -MD -MP -MF .deps/uniqscan-stage3hr.Tpo -c -o uniqscan-stage3hr.o `test -f 'stage3hr.c' || echo './'`stage3hr.c mv -f .deps/uniqscan-junction.Tpo .deps/uniqscan-junction.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-spanningelt.o -MD -MP -MF .deps/uniqscan-spanningelt.Tpo -c -o uniqscan-spanningelt.o `test -f 'spanningelt.c' || echo './'`spanningelt.c mv -f .deps/uniqscan-spanningelt.Tpo .deps/uniqscan-spanningelt.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-cmet.o -MD -MP -MF .deps/uniqscan-cmet.Tpo -c -o uniqscan-cmet.o `test -f 'cmet.c' || echo './'`cmet.c mv -f .deps/uniqscan-genome.Tpo .deps/uniqscan-genome.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-atoi.o -MD -MP -MF .deps/uniqscan-atoi.Tpo -c -o uniqscan-atoi.o `test -f 'atoi.c' || echo './'`atoi.c mv -f .deps/uniqscan-iit-read.Tpo .deps/uniqscan-iit-read.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-maxent.o -MD -MP -MF .deps/uniqscan-maxent.Tpo -c -o uniqscan-maxent.o `test -f 'maxent.c' || echo './'`maxent.c mv -f .deps/uniqscan-cmet.Tpo .deps/uniqscan-cmet.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-pair.o -MD -MP -MF .deps/uniqscan-pair.Tpo -c -o uniqscan-pair.o `test -f 'pair.c' || echo './'`pair.c mv -f .deps/uniqscan-substring.Tpo .deps/uniqscan-substring.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-pairpool.o -MD -MP -MF .deps/uniqscan-pairpool.Tpo -c -o uniqscan-pairpool.o `test -f 'pairpool.c' || echo './'`pairpool.c mv -f .deps/uniqscan-atoi.Tpo .deps/uniqscan-atoi.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-diag.o -MD -MP -MF .deps/uniqscan-diag.Tpo -c -o uniqscan-diag.o `test -f 'diag.c' || echo './'`diag.c mv -f .deps/uniqscan-genome_sites.Tpo .deps/uniqscan-genome_sites.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-diagpool.o -MD -MP -MF .deps/uniqscan-diagpool.Tpo -c -o uniqscan-diagpool.o `test -f 'diagpool.c' || echo './'`diagpool.c mv -f .deps/uniqscan-genome128_hr.Tpo .deps/uniqscan-genome128_hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-orderstat.o -MD -MP -MF .deps/uniqscan-orderstat.Tpo -c -o uniqscan-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c mv -f .deps/uniqscan-shortread.Tpo .deps/uniqscan-shortread.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-oligoindex_hr.o -MD -MP -MF .deps/uniqscan-oligoindex_hr.Tpo -c -o uniqscan-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo './'`oligoindex_hr.c mv -f .deps/uniqscan-diagpool.Tpo .deps/uniqscan-diagpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-cellpool.o -MD -MP -MF .deps/uniqscan-cellpool.Tpo -c -o uniqscan-cellpool.o `test -f 'cellpool.c' || echo './'`cellpool.c mv -f .deps/uniqscan-cellpool.Tpo .deps/uniqscan-cellpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-stage2.o -MD -MP -MF .deps/uniqscan-stage2.Tpo -c -o uniqscan-stage2.o `test -f 'stage2.c' || echo './'`stage2.c mv -f .deps/uniqscan-orderstat.Tpo .deps/uniqscan-orderstat.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-intron.o -MD -MP -MF .deps/uniqscan-intron.Tpo -c -o uniqscan-intron.o `test -f 'intron.c' || echo './'`intron.c mv -f .deps/uniqscan-diag.Tpo .deps/uniqscan-diag.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-boyer-moore.o -MD -MP -MF .deps/uniqscan-boyer-moore.Tpo -c -o uniqscan-boyer-moore.o `test -f 'boyer-moore.c' || echo './'`boyer-moore.c mv -f .deps/uniqscan-intron.Tpo .deps/uniqscan-intron.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-changepoint.o -MD -MP -MF .deps/uniqscan-changepoint.Tpo -c -o uniqscan-changepoint.o `test -f 'changepoint.c' || echo './'`changepoint.c mv -f .deps/uniqscan-pairpool.Tpo .deps/uniqscan-pairpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-pbinom.o -MD -MP -MF .deps/uniqscan-pbinom.Tpo -c -o uniqscan-pbinom.o `test -f 'pbinom.c' || echo './'`pbinom.c mv -f .deps/uniqscan-boyer-moore.Tpo .deps/uniqscan-boyer-moore.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-dynprog.o -MD -MP -MF .deps/uniqscan-dynprog.Tpo -c -o uniqscan-dynprog.o `test -f 'dynprog.c' || echo './'`dynprog.c mv -f .deps/uniqscan-changepoint.Tpo .deps/uniqscan-changepoint.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-dynprog_simd.o -MD -MP -MF .deps/uniqscan-dynprog_simd.Tpo -c -o uniqscan-dynprog_simd.o `test -f 'dynprog_simd.c' || echo './'`dynprog_simd.c mv -f .deps/uniqscan-dynprog_simd.Tpo .deps/uniqscan-dynprog_simd.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-dynprog_single.o -MD -MP -MF .deps/uniqscan-dynprog_single.Tpo -c -o uniqscan-dynprog_single.o `test -f 'dynprog_single.c' || echo './'`dynprog_single.c mv -f .deps/uniqscan-maxent.Tpo .deps/uniqscan-maxent.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-dynprog_genome.o -MD -MP -MF .deps/uniqscan-dynprog_genome.Tpo -c -o uniqscan-dynprog_genome.o `test -f 'dynprog_genome.c' || echo './'`dynprog_genome.c mv -f .deps/uniqscan-pbinom.Tpo .deps/uniqscan-pbinom.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-dynprog_cdna.o -MD -MP -MF .deps/uniqscan-dynprog_cdna.Tpo -c -o uniqscan-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo './'`dynprog_cdna.c mv -f .deps/uniqscan-maxent_hr.Tpo .deps/uniqscan-maxent_hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-dynprog_end.o -MD -MP -MF .deps/uniqscan-dynprog_end.Tpo -c -o uniqscan-dynprog_end.o `test -f 'dynprog_end.c' || echo './'`dynprog_end.c mv -f .deps/uniqscan-dynprog_cdna.Tpo .deps/uniqscan-dynprog_cdna.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-translation.o -MD -MP -MF .deps/uniqscan-translation.Tpo -c -o uniqscan-translation.o `test -f 'translation.c' || echo './'`translation.c mv -f .deps/uniqscan-dynprog_single.Tpo .deps/uniqscan-dynprog_single.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-doublelist.o -MD -MP -MF .deps/uniqscan-doublelist.Tpo -c -o uniqscan-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c mv -f .deps/uniqscan-dynprog.Tpo .deps/uniqscan-dynprog.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-smooth.o -MD -MP -MF .deps/uniqscan-smooth.Tpo -c -o uniqscan-smooth.o `test -f 'smooth.c' || echo './'`smooth.c mv -f .deps/uniqscan-doublelist.Tpo .deps/uniqscan-doublelist.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-chimera.o -MD -MP -MF .deps/uniqscan-chimera.Tpo -c -o uniqscan-chimera.o `test -f 'chimera.c' || echo './'`chimera.c mv -f .deps/uniqscan-dynprog_end.Tpo .deps/uniqscan-dynprog_end.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-stage3.o -MD -MP -MF .deps/uniqscan-stage3.Tpo -c -o uniqscan-stage3.o `test -f 'stage3.c' || echo './'`stage3.c mv -f .deps/uniqscan-smooth.Tpo .deps/uniqscan-smooth.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-splicestringpool.o -MD -MP -MF .deps/uniqscan-splicestringpool.Tpo -c -o uniqscan-splicestringpool.o `test -f 'splicestringpool.c' || echo './'`splicestringpool.c mv -f .deps/uniqscan-chimera.Tpo .deps/uniqscan-chimera.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-splicetrie_build.o -MD -MP -MF .deps/uniqscan-splicetrie_build.Tpo -c -o uniqscan-splicetrie_build.o `test -f 'splicetrie_build.c' || echo './'`splicetrie_build.c mv -f .deps/uniqscan-splicestringpool.Tpo .deps/uniqscan-splicestringpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-splicetrie.o -MD -MP -MF .deps/uniqscan-splicetrie.Tpo -c -o uniqscan-splicetrie.o `test -f 'splicetrie.c' || echo './'`splicetrie.c mv -f .deps/uniqscan-dynprog_genome.Tpo .deps/uniqscan-dynprog_genome.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-splice.o -MD -MP -MF .deps/uniqscan-splice.Tpo -c -o uniqscan-splice.o `test -f 'splice.c' || echo './'`splice.c mv -f .deps/uniqscan-translation.Tpo .deps/uniqscan-translation.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-indel.o -MD -MP -MF .deps/uniqscan-indel.Tpo -c -o uniqscan-indel.o `test -f 'indel.c' || echo './'`indel.c mv -f .deps/uniqscan-indel.Tpo .deps/uniqscan-indel.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-bitpack64-access.o -MD -MP -MF .deps/uniqscan-bitpack64-access.Tpo -c -o uniqscan-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c mv -f .deps/uniqscan-splicetrie.Tpo .deps/uniqscan-splicetrie.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-bytecoding.o -MD -MP -MF .deps/uniqscan-bytecoding.Tpo -c -o uniqscan-bytecoding.o `test -f 'bytecoding.c' || echo './'`bytecoding.c mv -f .deps/uniqscan-stage2.Tpo .deps/uniqscan-stage2.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-univdiag.o -MD -MP -MF .deps/uniqscan-univdiag.Tpo -c -o uniqscan-univdiag.o `test -f 'univdiag.c' || echo './'`univdiag.c mv -f .deps/uniqscan-univdiag.Tpo .deps/uniqscan-univdiag.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-sarray-read.o -MD -MP -MF .deps/uniqscan-sarray-read.Tpo -c -o uniqscan-sarray-read.o `test -f 'sarray-read.c' || echo './'`sarray-read.c mv -f .deps/uniqscan-bytecoding.Tpo .deps/uniqscan-bytecoding.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-stage1hr.o -MD -MP -MF .deps/uniqscan-stage1hr.Tpo -c -o uniqscan-stage1hr.o `test -f 'stage1hr.c' || echo './'`stage1hr.c mv -f .deps/uniqscan-bitpack64-access.Tpo .deps/uniqscan-bitpack64-access.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-resulthr.o -MD -MP -MF .deps/uniqscan-resulthr.Tpo -c -o uniqscan-resulthr.o `test -f 'resulthr.c' || echo './'`resulthr.c mv -f .deps/uniqscan-resulthr.Tpo .deps/uniqscan-resulthr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-datadir.o -MD -MP -MF .deps/uniqscan-datadir.Tpo -c -o uniqscan-datadir.o `test -f 'datadir.c' || echo './'`datadir.c mv -f .deps/uniqscan-datadir.Tpo .deps/uniqscan-datadir.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-getopt.o -MD -MP -MF .deps/uniqscan-getopt.Tpo -c -o uniqscan-getopt.o `test -f 'getopt.c' || echo './'`getopt.c mv -f .deps/uniqscan-getopt.Tpo .deps/uniqscan-getopt.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-getopt1.o -MD -MP -MF .deps/uniqscan-getopt1.Tpo -c -o uniqscan-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c mv -f .deps/uniqscan-getopt1.Tpo .deps/uniqscan-getopt1.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -MT uniqscan-uniqscan.o -MD -MP -MF .deps/uniqscan-uniqscan.Tpo -c -o uniqscan-uniqscan.o `test -f 'uniqscan.c' || echo './'`uniqscan.c mv -f .deps/uniqscan-splicetrie_build.Tpo .deps/uniqscan-splicetrie_build.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-except.o -MD -MP -MF .deps/uniqscanl-except.Tpo -c -o uniqscanl-except.o `test -f 'except.c' || echo './'`except.c mv -f .deps/uniqscanl-except.Tpo .deps/uniqscanl-except.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-assert.o -MD -MP -MF .deps/uniqscanl-assert.Tpo -c -o uniqscanl-assert.o `test -f 'assert.c' || echo './'`assert.c mv -f .deps/uniqscanl-assert.Tpo .deps/uniqscanl-assert.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-mem.o -MD -MP -MF .deps/uniqscanl-mem.Tpo -c -o uniqscanl-mem.o `test -f 'mem.c' || echo './'`mem.c mv -f .deps/uniqscan-pair.Tpo .deps/uniqscan-pair.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-intlist.o -MD -MP -MF .deps/uniqscanl-intlist.Tpo -c -o uniqscanl-intlist.o `test -f 'intlist.c' || echo './'`intlist.c mv -f .deps/uniqscanl-mem.Tpo .deps/uniqscanl-mem.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-list.o -MD -MP -MF .deps/uniqscanl-list.Tpo -c -o uniqscanl-list.o `test -f 'list.c' || echo './'`list.c mv -f .deps/uniqscan-splice.Tpo .deps/uniqscan-splice.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-littleendian.o -MD -MP -MF .deps/uniqscanl-littleendian.Tpo -c -o uniqscanl-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c mv -f .deps/uniqscanl-littleendian.Tpo .deps/uniqscanl-littleendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-bigendian.o -MD -MP -MF .deps/uniqscanl-bigendian.Tpo -c -o uniqscanl-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c mv -f .deps/uniqscanl-bigendian.Tpo .deps/uniqscanl-bigendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-univinterval.o -MD -MP -MF .deps/uniqscanl-univinterval.Tpo -c -o uniqscanl-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c mv -f .deps/uniqscanl-univinterval.Tpo .deps/uniqscanl-univinterval.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-interval.o -MD -MP -MF .deps/uniqscanl-interval.Tpo -c -o uniqscanl-interval.o `test -f 'interval.c' || echo './'`interval.c mv -f .deps/uniqscanl-list.Tpo .deps/uniqscanl-list.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-uintlist.o -MD -MP -MF .deps/uniqscanl-uintlist.Tpo -c -o uniqscanl-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c mv -f .deps/uniqscanl-intlist.Tpo .deps/uniqscanl-intlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-uint8list.o -MD -MP -MF .deps/uniqscanl-uint8list.Tpo -c -o uniqscanl-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c mv -f .deps/uniqscanl-interval.Tpo .deps/uniqscanl-interval.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-stopwatch.o -MD -MP -MF .deps/uniqscanl-stopwatch.Tpo -c -o uniqscanl-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c mv -f .deps/uniqscan-uniqscan.Tpo .deps/uniqscan-uniqscan.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-access.o -MD -MP -MF .deps/uniqscanl-access.Tpo -c -o uniqscanl-access.o `test -f 'access.c' || echo './'`access.c mv -f .deps/uniqscanl-uintlist.Tpo .deps/uniqscanl-uintlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-filestring.o -MD -MP -MF .deps/uniqscanl-filestring.Tpo -c -o uniqscanl-filestring.o `test -f 'filestring.c' || echo './'`filestring.c mv -f .deps/uniqscanl-stopwatch.Tpo .deps/uniqscanl-stopwatch.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-iit-read-univ.o -MD -MP -MF .deps/uniqscanl-iit-read-univ.Tpo -c -o uniqscanl-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c mv -f .deps/uniqscanl-uint8list.Tpo .deps/uniqscanl-uint8list.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-iit-read.o -MD -MP -MF .deps/uniqscanl-iit-read.Tpo -c -o uniqscanl-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c mv -f .deps/uniqscanl-access.Tpo .deps/uniqscanl-access.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-md5.o -MD -MP -MF .deps/uniqscanl-md5.Tpo -c -o uniqscanl-md5.o `test -f 'md5.c' || echo './'`md5.c mv -f .deps/uniqscanl-filestring.Tpo .deps/uniqscanl-filestring.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-bzip2.o -MD -MP -MF .deps/uniqscanl-bzip2.Tpo -c -o uniqscanl-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c mv -f .deps/gsnapl-stage1hr.Tpo .deps/gsnapl-stage1hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-sequence.o -MD -MP -MF .deps/uniqscanl-sequence.Tpo -c -o uniqscanl-sequence.o `test -f 'sequence.c' || echo './'`sequence.c mv -f .deps/uniqscan-sarray-read.Tpo .deps/uniqscan-sarray-read.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-reader.o -MD -MP -MF .deps/uniqscanl-reader.Tpo -c -o uniqscanl-reader.o `test -f 'reader.c' || echo './'`reader.c mv -f .deps/uniqscanl-bzip2.Tpo .deps/uniqscanl-bzip2.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-genomicpos.o -MD -MP -MF .deps/uniqscanl-genomicpos.Tpo -c -o uniqscanl-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c mv -f .deps/uniqscanl-reader.Tpo .deps/uniqscanl-reader.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-compress.o -MD -MP -MF .deps/uniqscanl-compress.Tpo -c -o uniqscanl-compress.o `test -f 'compress.c' || echo './'`compress.c mv -f .deps/uniqscanl-genomicpos.Tpo .deps/uniqscanl-genomicpos.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-genome.o -MD -MP -MF .deps/uniqscanl-genome.Tpo -c -o uniqscanl-genome.o `test -f 'genome.c' || echo './'`genome.c mv -f .deps/uniqscanl-md5.Tpo .deps/uniqscanl-md5.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-popcount.o -MD -MP -MF .deps/uniqscanl-popcount.Tpo -c -o uniqscanl-popcount.o `test -f 'popcount.c' || echo './'`popcount.c mv -f .deps/uniqscanl-iit-read-univ.Tpo .deps/uniqscanl-iit-read-univ.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-genome128_hr.o -MD -MP -MF .deps/uniqscanl-genome128_hr.Tpo -c -o uniqscanl-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c mv -f .deps/uniqscanl-compress.Tpo .deps/uniqscanl-compress.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-genome_sites.o -MD -MP -MF .deps/uniqscanl-genome_sites.Tpo -c -o uniqscanl-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c mv -f .deps/uniqscanl-popcount.Tpo .deps/uniqscanl-popcount.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-bitpack64-read.o -MD -MP -MF .deps/uniqscanl-bitpack64-read.Tpo -c -o uniqscanl-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c mv -f .deps/uniqscanl-sequence.Tpo .deps/uniqscanl-sequence.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-bitpack64-readtwo.o -MD -MP -MF .deps/uniqscanl-bitpack64-readtwo.Tpo -c -o uniqscanl-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c mv -f .deps/uniqscan-stage3.Tpo .deps/uniqscan-stage3.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-indexdb.o -MD -MP -MF .deps/uniqscanl-indexdb.Tpo -c -o uniqscanl-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c mv -f .deps/uniqscan-oligoindex_hr.Tpo .deps/uniqscan-oligoindex_hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-indexdb_hr.o -MD -MP -MF .deps/uniqscanl-indexdb_hr.Tpo -c -o uniqscanl-indexdb_hr.o `test -f 'indexdb_hr.c' || echo './'`indexdb_hr.c mv -f .deps/uniqscan-stage3hr.Tpo .deps/uniqscan-stage3hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-oligo.o -MD -MP -MF .deps/uniqscanl-oligo.Tpo -c -o uniqscanl-oligo.o `test -f 'oligo.c' || echo './'`oligo.c mv -f .deps/uniqscanl-oligo.Tpo .deps/uniqscanl-oligo.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-chrom.o -MD -MP -MF .deps/uniqscanl-chrom.Tpo -c -o uniqscanl-chrom.o `test -f 'chrom.c' || echo './'`chrom.c chrom.c: In function 'Chrom_from_string': chrom.c:116:12: warning: comparison between pointer and zero character constant [-Wpointer-compare] while (p != '\0' && *p >= '0' && *p <= '9') { ^~ chrom.c:116:10: note: did you mean to dereference the pointer? while (p != '\0' && *p >= '0' && *p <= '9') { ^ mv -f .deps/uniqscanl-chrom.Tpo .deps/uniqscanl-chrom.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-segmentpos.o -MD -MP -MF .deps/uniqscanl-segmentpos.Tpo -c -o uniqscanl-segmentpos.o `test -f 'segmentpos.c' || echo './'`segmentpos.c mv -f .deps/uniqscanl-bitpack64-read.Tpo .deps/uniqscanl-bitpack64-read.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-chrnum.o -MD -MP -MF .deps/uniqscanl-chrnum.Tpo -c -o uniqscanl-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c mv -f .deps/uniqscanl-bitpack64-readtwo.Tpo .deps/uniqscanl-bitpack64-readtwo.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-maxent_hr.o -MD -MP -MF .deps/uniqscanl-maxent_hr.Tpo -c -o uniqscanl-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c mv -f .deps/uniqscanl-chrnum.Tpo .deps/uniqscanl-chrnum.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-mapq.o -MD -MP -MF .deps/uniqscanl-mapq.Tpo -c -o uniqscanl-mapq.o `test -f 'mapq.c' || echo './'`mapq.c mv -f .deps/uniqscanl-segmentpos.Tpo .deps/uniqscanl-segmentpos.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-shortread.o -MD -MP -MF .deps/uniqscanl-shortread.Tpo -c -o uniqscanl-shortread.o `test -f 'shortread.c' || echo './'`shortread.c mv -f .deps/uniqscanl-indexdb_hr.Tpo .deps/uniqscanl-indexdb_hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-substring.o -MD -MP -MF .deps/uniqscanl-substring.Tpo -c -o uniqscanl-substring.o `test -f 'substring.c' || echo './'`substring.c mv -f .deps/uniqscanl-mapq.Tpo .deps/uniqscanl-mapq.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-junction.o -MD -MP -MF .deps/uniqscanl-junction.Tpo -c -o uniqscanl-junction.o `test -f 'junction.c' || echo './'`junction.c mv -f .deps/uniqscanl-junction.Tpo .deps/uniqscanl-junction.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-stage3hr.o -MD -MP -MF .deps/uniqscanl-stage3hr.Tpo -c -o uniqscanl-stage3hr.o `test -f 'stage3hr.c' || echo './'`stage3hr.c mv -f .deps/uniqscanl-genome_sites.Tpo .deps/uniqscanl-genome_sites.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-spanningelt.o -MD -MP -MF .deps/uniqscanl-spanningelt.Tpo -c -o uniqscanl-spanningelt.o `test -f 'spanningelt.c' || echo './'`spanningelt.c mv -f .deps/uniqscanl-indexdb.Tpo .deps/uniqscanl-indexdb.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-cmet.o -MD -MP -MF .deps/uniqscanl-cmet.Tpo -c -o uniqscanl-cmet.o `test -f 'cmet.c' || echo './'`cmet.c mv -f .deps/uniqscanl-iit-read.Tpo .deps/uniqscanl-iit-read.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-atoi.o -MD -MP -MF .deps/uniqscanl-atoi.Tpo -c -o uniqscanl-atoi.o `test -f 'atoi.c' || echo './'`atoi.c mv -f .deps/uniqscanl-spanningelt.Tpo .deps/uniqscanl-spanningelt.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-maxent.o -MD -MP -MF .deps/uniqscanl-maxent.Tpo -c -o uniqscanl-maxent.o `test -f 'maxent.c' || echo './'`maxent.c mv -f .deps/uniqscanl-atoi.Tpo .deps/uniqscanl-atoi.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-pair.o -MD -MP -MF .deps/uniqscanl-pair.Tpo -c -o uniqscanl-pair.o `test -f 'pair.c' || echo './'`pair.c mv -f .deps/uniqscanl-cmet.Tpo .deps/uniqscanl-cmet.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-pairpool.o -MD -MP -MF .deps/uniqscanl-pairpool.Tpo -c -o uniqscanl-pairpool.o `test -f 'pairpool.c' || echo './'`pairpool.c mv -f .deps/uniqscanl-substring.Tpo .deps/uniqscanl-substring.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-diag.o -MD -MP -MF .deps/uniqscanl-diag.Tpo -c -o uniqscanl-diag.o `test -f 'diag.c' || echo './'`diag.c mv -f .deps/uniqscanl-genome128_hr.Tpo .deps/uniqscanl-genome128_hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-diagpool.o -MD -MP -MF .deps/uniqscanl-diagpool.Tpo -c -o uniqscanl-diagpool.o `test -f 'diagpool.c' || echo './'`diagpool.c mv -f .deps/uniqscanl-diagpool.Tpo .deps/uniqscanl-diagpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-orderstat.o -MD -MP -MF .deps/uniqscanl-orderstat.Tpo -c -o uniqscanl-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c mv -f .deps/uniqscanl-orderstat.Tpo .deps/uniqscanl-orderstat.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-oligoindex_hr.o -MD -MP -MF .deps/uniqscanl-oligoindex_hr.Tpo -c -o uniqscanl-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo './'`oligoindex_hr.c mv -f .deps/uniqscanl-diag.Tpo .deps/uniqscanl-diag.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-cellpool.o -MD -MP -MF .deps/uniqscanl-cellpool.Tpo -c -o uniqscanl-cellpool.o `test -f 'cellpool.c' || echo './'`cellpool.c mv -f .deps/uniqscanl-pairpool.Tpo .deps/uniqscanl-pairpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-stage2.o -MD -MP -MF .deps/uniqscanl-stage2.Tpo -c -o uniqscanl-stage2.o `test -f 'stage2.c' || echo './'`stage2.c mv -f .deps/uniqscanl-genome.Tpo .deps/uniqscanl-genome.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-intron.o -MD -MP -MF .deps/uniqscanl-intron.Tpo -c -o uniqscanl-intron.o `test -f 'intron.c' || echo './'`intron.c mv -f .deps/uniqscanl-cellpool.Tpo .deps/uniqscanl-cellpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-boyer-moore.o -MD -MP -MF .deps/uniqscanl-boyer-moore.Tpo -c -o uniqscanl-boyer-moore.o `test -f 'boyer-moore.c' || echo './'`boyer-moore.c mv -f .deps/uniqscanl-intron.Tpo .deps/uniqscanl-intron.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-changepoint.o -MD -MP -MF .deps/uniqscanl-changepoint.Tpo -c -o uniqscanl-changepoint.o `test -f 'changepoint.c' || echo './'`changepoint.c mv -f .deps/uniqscanl-changepoint.Tpo .deps/uniqscanl-changepoint.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-pbinom.o -MD -MP -MF .deps/uniqscanl-pbinom.Tpo -c -o uniqscanl-pbinom.o `test -f 'pbinom.c' || echo './'`pbinom.c mv -f .deps/uniqscanl-boyer-moore.Tpo .deps/uniqscanl-boyer-moore.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-dynprog.o -MD -MP -MF .deps/uniqscanl-dynprog.Tpo -c -o uniqscanl-dynprog.o `test -f 'dynprog.c' || echo './'`dynprog.c mv -f .deps/uniqscanl-pbinom.Tpo .deps/uniqscanl-pbinom.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-dynprog_simd.o -MD -MP -MF .deps/uniqscanl-dynprog_simd.Tpo -c -o uniqscanl-dynprog_simd.o `test -f 'dynprog_simd.c' || echo './'`dynprog_simd.c mv -f .deps/uniqscanl-shortread.Tpo .deps/uniqscanl-shortread.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-dynprog_single.o -MD -MP -MF .deps/uniqscanl-dynprog_single.Tpo -c -o uniqscanl-dynprog_single.o `test -f 'dynprog_single.c' || echo './'`dynprog_single.c mv -f .deps/uniqscanl-maxent.Tpo .deps/uniqscanl-maxent.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-dynprog_genome.o -MD -MP -MF .deps/uniqscanl-dynprog_genome.Tpo -c -o uniqscanl-dynprog_genome.o `test -f 'dynprog_genome.c' || echo './'`dynprog_genome.c mv -f .deps/uniqscanl-dynprog_simd.Tpo .deps/uniqscanl-dynprog_simd.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-dynprog_cdna.o -MD -MP -MF .deps/uniqscanl-dynprog_cdna.Tpo -c -o uniqscanl-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo './'`dynprog_cdna.c mv -f .deps/uniqscanl-dynprog_cdna.Tpo .deps/uniqscanl-dynprog_cdna.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-dynprog_end.o -MD -MP -MF .deps/uniqscanl-dynprog_end.Tpo -c -o uniqscanl-dynprog_end.o `test -f 'dynprog_end.c' || echo './'`dynprog_end.c mv -f .deps/uniqscanl-dynprog.Tpo .deps/uniqscanl-dynprog.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-translation.o -MD -MP -MF .deps/uniqscanl-translation.Tpo -c -o uniqscanl-translation.o `test -f 'translation.c' || echo './'`translation.c mv -f .deps/uniqscanl-dynprog_single.Tpo .deps/uniqscanl-dynprog_single.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-doublelist.o -MD -MP -MF .deps/uniqscanl-doublelist.Tpo -c -o uniqscanl-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c mv -f .deps/uniqscanl-doublelist.Tpo .deps/uniqscanl-doublelist.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-smooth.o -MD -MP -MF .deps/uniqscanl-smooth.Tpo -c -o uniqscanl-smooth.o `test -f 'smooth.c' || echo './'`smooth.c mv -f .deps/uniqscanl-dynprog_genome.Tpo .deps/uniqscanl-dynprog_genome.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-chimera.o -MD -MP -MF .deps/uniqscanl-chimera.Tpo -c -o uniqscanl-chimera.o `test -f 'chimera.c' || echo './'`chimera.c mv -f .deps/uniqscanl-smooth.Tpo .deps/uniqscanl-smooth.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-stage3.o -MD -MP -MF .deps/uniqscanl-stage3.Tpo -c -o uniqscanl-stage3.o `test -f 'stage3.c' || echo './'`stage3.c mv -f .deps/uniqscanl-dynprog_end.Tpo .deps/uniqscanl-dynprog_end.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-splicestringpool.o -MD -MP -MF .deps/uniqscanl-splicestringpool.Tpo -c -o uniqscanl-splicestringpool.o `test -f 'splicestringpool.c' || echo './'`splicestringpool.c mv -f .deps/uniqscanl-splicestringpool.Tpo .deps/uniqscanl-splicestringpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-splicetrie_build.o -MD -MP -MF .deps/uniqscanl-splicetrie_build.Tpo -c -o uniqscanl-splicetrie_build.o `test -f 'splicetrie_build.c' || echo './'`splicetrie_build.c mv -f .deps/uniqscanl-chimera.Tpo .deps/uniqscanl-chimera.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-splicetrie.o -MD -MP -MF .deps/uniqscanl-splicetrie.Tpo -c -o uniqscanl-splicetrie.o `test -f 'splicetrie.c' || echo './'`splicetrie.c mv -f .deps/uniqscanl-translation.Tpo .deps/uniqscanl-translation.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-splice.o -MD -MP -MF .deps/uniqscanl-splice.Tpo -c -o uniqscanl-splice.o `test -f 'splice.c' || echo './'`splice.c mv -f .deps/uniqscanl-maxent_hr.Tpo .deps/uniqscanl-maxent_hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-indel.o -MD -MP -MF .deps/uniqscanl-indel.Tpo -c -o uniqscanl-indel.o `test -f 'indel.c' || echo './'`indel.c mv -f .deps/uniqscanl-stage2.Tpo .deps/uniqscanl-stage2.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-bitpack64-access.o -MD -MP -MF .deps/uniqscanl-bitpack64-access.Tpo -c -o uniqscanl-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c mv -f .deps/uniqscanl-indel.Tpo .deps/uniqscanl-indel.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-stage1hr.o -MD -MP -MF .deps/uniqscanl-stage1hr.Tpo -c -o uniqscanl-stage1hr.o `test -f 'stage1hr.c' || echo './'`stage1hr.c mv -f .deps/uniqscanl-splicetrie.Tpo .deps/uniqscanl-splicetrie.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-resulthr.o -MD -MP -MF .deps/uniqscanl-resulthr.Tpo -c -o uniqscanl-resulthr.o `test -f 'resulthr.c' || echo './'`resulthr.c mv -f .deps/uniqscanl-resulthr.Tpo .deps/uniqscanl-resulthr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-datadir.o -MD -MP -MF .deps/uniqscanl-datadir.Tpo -c -o uniqscanl-datadir.o `test -f 'datadir.c' || echo './'`datadir.c mv -f .deps/uniqscan-stage1hr.Tpo .deps/uniqscan-stage1hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-getopt.o -MD -MP -MF .deps/uniqscanl-getopt.Tpo -c -o uniqscanl-getopt.o `test -f 'getopt.c' || echo './'`getopt.c mv -f .deps/uniqscanl-datadir.Tpo .deps/uniqscanl-datadir.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-getopt1.o -MD -MP -MF .deps/uniqscanl-getopt1.Tpo -c -o uniqscanl-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c mv -f .deps/uniqscanl-getopt1.Tpo .deps/uniqscanl-getopt1.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -MT uniqscanl-uniqscan.o -MD -MP -MF .deps/uniqscanl-uniqscan.Tpo -c -o uniqscanl-uniqscan.o `test -f 'uniqscan.c' || echo './'`uniqscan.c mv -f .deps/uniqscanl-getopt.Tpo .deps/uniqscanl-getopt.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT snpindex-except.o -MD -MP -MF .deps/snpindex-except.Tpo -c -o snpindex-except.o `test -f 'except.c' || echo './'`except.c mv -f .deps/uniqscanl-bitpack64-access.Tpo .deps/uniqscanl-bitpack64-access.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT snpindex-assert.o -MD -MP -MF .deps/snpindex-assert.Tpo -c -o snpindex-assert.o `test -f 'assert.c' || echo './'`assert.c mv -f .deps/snpindex-assert.Tpo .deps/snpindex-assert.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT snpindex-mem.o -MD -MP -MF .deps/snpindex-mem.Tpo -c -o snpindex-mem.o `test -f 'mem.c' || echo './'`mem.c mv -f .deps/snpindex-except.Tpo .deps/snpindex-except.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT snpindex-intlist.o -MD -MP -MF .deps/snpindex-intlist.Tpo -c -o snpindex-intlist.o `test -f 'intlist.c' || echo './'`intlist.c mv -f .deps/snpindex-mem.Tpo .deps/snpindex-mem.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT snpindex-list.o -MD -MP -MF .deps/snpindex-list.Tpo -c -o snpindex-list.o `test -f 'list.c' || echo './'`list.c mv -f .deps/snpindex-list.Tpo .deps/snpindex-list.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT snpindex-littleendian.o -MD -MP -MF .deps/snpindex-littleendian.Tpo -c -o snpindex-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c mv -f .deps/snpindex-littleendian.Tpo .deps/snpindex-littleendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT snpindex-bigendian.o -MD -MP -MF .deps/snpindex-bigendian.Tpo -c -o snpindex-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c mv -f .deps/snpindex-intlist.Tpo .deps/snpindex-intlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT snpindex-univinterval.o -MD -MP -MF .deps/snpindex-univinterval.Tpo -c -o snpindex-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c mv -f .deps/uniqscanl-splice.Tpo .deps/uniqscanl-splice.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT snpindex-interval.o -MD -MP -MF .deps/snpindex-interval.Tpo -c -o snpindex-interval.o `test -f 'interval.c' || echo './'`interval.c mv -f .deps/snpindex-univinterval.Tpo .deps/snpindex-univinterval.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT snpindex-uintlist.o -MD -MP -MF .deps/snpindex-uintlist.Tpo -c -o snpindex-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c mv -f .deps/snpindex-interval.Tpo .deps/snpindex-interval.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT snpindex-stopwatch.o -MD -MP -MF .deps/snpindex-stopwatch.Tpo -c -o snpindex-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c mv -f .deps/uniqscanl-pair.Tpo .deps/uniqscanl-pair.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT snpindex-access.o -MD -MP -MF .deps/snpindex-access.Tpo -c -o snpindex-access.o `test -f 'access.c' || echo './'`access.c mv -f .deps/snpindex-bigendian.Tpo .deps/snpindex-bigendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT snpindex-filestring.o -MD -MP -MF .deps/snpindex-filestring.Tpo -c -o snpindex-filestring.o `test -f 'filestring.c' || echo './'`filestring.c mv -f .deps/snpindex-stopwatch.Tpo .deps/snpindex-stopwatch.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT snpindex-iit-read-univ.o -MD -MP -MF .deps/snpindex-iit-read-univ.Tpo -c -o snpindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c mv -f .deps/uniqscanl-uniqscan.Tpo .deps/uniqscanl-uniqscan.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT snpindex-iit-read.o -MD -MP -MF .deps/snpindex-iit-read.Tpo -c -o snpindex-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c mv -f .deps/snpindex-uintlist.Tpo .deps/snpindex-uintlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT snpindex-genomicpos.o -MD -MP -MF .deps/snpindex-genomicpos.Tpo -c -o snpindex-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c mv -f .deps/uniqscanl-oligoindex_hr.Tpo .deps/uniqscanl-oligoindex_hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT snpindex-compress.o -MD -MP -MF .deps/snpindex-compress.Tpo -c -o snpindex-compress.o `test -f 'compress.c' || echo './'`compress.c mv -f .deps/snpindex-genomicpos.Tpo .deps/snpindex-genomicpos.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT snpindex-compress-write.o -MD -MP -MF .deps/snpindex-compress-write.Tpo -c -o snpindex-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c mv -f .deps/uniqscanl-splicetrie_build.Tpo .deps/uniqscanl-splicetrie_build.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT snpindex-popcount.o -MD -MP -MF .deps/snpindex-popcount.Tpo -c -o snpindex-popcount.o `test -f 'popcount.c' || echo './'`popcount.c mv -f .deps/snpindex-access.Tpo .deps/snpindex-access.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT snpindex-genome128_hr.o -MD -MP -MF .deps/snpindex-genome128_hr.Tpo -c -o snpindex-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c mv -f .deps/snpindex-filestring.Tpo .deps/snpindex-filestring.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT snpindex-bitpack64-read.o -MD -MP -MF .deps/snpindex-bitpack64-read.Tpo -c -o snpindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c mv -f .deps/snpindex-compress.Tpo .deps/snpindex-compress.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT snpindex-bitpack64-readtwo.o -MD -MP -MF .deps/snpindex-bitpack64-readtwo.Tpo -c -o snpindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c mv -f .deps/snpindex-popcount.Tpo .deps/snpindex-popcount.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT snpindex-bitpack64-write.o -MD -MP -MF .deps/snpindex-bitpack64-write.Tpo -c -o snpindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c mv -f .deps/snpindex-compress-write.Tpo .deps/snpindex-compress-write.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT snpindex-indexdb.o -MD -MP -MF .deps/snpindex-indexdb.Tpo -c -o snpindex-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c mv -f .deps/snpindex-iit-read-univ.Tpo .deps/snpindex-iit-read-univ.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT snpindex-indexdb-write.o -MD -MP -MF .deps/snpindex-indexdb-write.Tpo -c -o snpindex-indexdb-write.o `test -f 'indexdb-write.c' || echo './'`indexdb-write.c mv -f .deps/snpindex-bitpack64-readtwo.Tpo .deps/snpindex-bitpack64-readtwo.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT snpindex-chrom.o -MD -MP -MF .deps/snpindex-chrom.Tpo -c -o snpindex-chrom.o `test -f 'chrom.c' || echo './'`chrom.c chrom.c: In function 'Chrom_from_string': chrom.c:116:12: warning: comparison between pointer and zero character constant [-Wpointer-compare] while (p != '\0' && *p >= '0' && *p <= '9') { ^~ chrom.c:116:10: note: did you mean to dereference the pointer? while (p != '\0' && *p >= '0' && *p <= '9') { ^ mv -f .deps/snpindex-chrom.Tpo .deps/snpindex-chrom.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT snpindex-md5.o -MD -MP -MF .deps/snpindex-md5.Tpo -c -o snpindex-md5.o `test -f 'md5.c' || echo './'`md5.c mv -f .deps/uniqscanl-stage3hr.Tpo .deps/uniqscanl-stage3hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT snpindex-bzip2.o -MD -MP -MF .deps/snpindex-bzip2.Tpo -c -o snpindex-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c mv -f .deps/snpindex-bzip2.Tpo .deps/snpindex-bzip2.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT snpindex-sequence.o -MD -MP -MF .deps/snpindex-sequence.Tpo -c -o snpindex-sequence.o `test -f 'sequence.c' || echo './'`sequence.c mv -f .deps/snpindex-md5.Tpo .deps/snpindex-md5.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT snpindex-genome.o -MD -MP -MF .deps/snpindex-genome.Tpo -c -o snpindex-genome.o `test -f 'genome.c' || echo './'`genome.c mv -f .deps/snpindex-indexdb-write.Tpo .deps/snpindex-indexdb-write.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT snpindex-datadir.o -MD -MP -MF .deps/snpindex-datadir.Tpo -c -o snpindex-datadir.o `test -f 'datadir.c' || echo './'`datadir.c mv -f .deps/snpindex-bitpack64-read.Tpo .deps/snpindex-bitpack64-read.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT snpindex-getopt.o -MD -MP -MF .deps/snpindex-getopt.Tpo -c -o snpindex-getopt.o `test -f 'getopt.c' || echo './'`getopt.c mv -f .deps/snpindex-datadir.Tpo .deps/snpindex-datadir.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT snpindex-getopt1.o -MD -MP -MF .deps/snpindex-getopt1.Tpo -c -o snpindex-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c mv -f .deps/snpindex-bitpack64-write.Tpo .deps/snpindex-bitpack64-write.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT snpindex-snpindex.o -MD -MP -MF .deps/snpindex-snpindex.Tpo -c -o snpindex-snpindex.o `test -f 'snpindex.c' || echo './'`snpindex.c mv -f .deps/snpindex-getopt1.Tpo .deps/snpindex-getopt1.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-except.o -MD -MP -MF .deps/cmetindex-except.Tpo -c -o cmetindex-except.o `test -f 'except.c' || echo './'`except.c mv -f .deps/cmetindex-except.Tpo .deps/cmetindex-except.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-assert.o -MD -MP -MF .deps/cmetindex-assert.Tpo -c -o cmetindex-assert.o `test -f 'assert.c' || echo './'`assert.c mv -f .deps/cmetindex-assert.Tpo .deps/cmetindex-assert.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-mem.o -MD -MP -MF .deps/cmetindex-mem.Tpo -c -o cmetindex-mem.o `test -f 'mem.c' || echo './'`mem.c mv -f .deps/snpindex-getopt.Tpo .deps/snpindex-getopt.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-littleendian.o -MD -MP -MF .deps/cmetindex-littleendian.Tpo -c -o cmetindex-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c mv -f .deps/cmetindex-littleendian.Tpo .deps/cmetindex-littleendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-bigendian.o -MD -MP -MF .deps/cmetindex-bigendian.Tpo -c -o cmetindex-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c mv -f .deps/snpindex-indexdb.Tpo .deps/snpindex-indexdb.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-genomicpos.o -MD -MP -MF .deps/cmetindex-genomicpos.Tpo -c -o cmetindex-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c mv -f .deps/cmetindex-genomicpos.Tpo .deps/cmetindex-genomicpos.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-stopwatch.o -MD -MP -MF .deps/cmetindex-stopwatch.Tpo -c -o cmetindex-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c mv -f .deps/cmetindex-stopwatch.Tpo .deps/cmetindex-stopwatch.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-access.o -MD -MP -MF .deps/cmetindex-access.Tpo -c -o cmetindex-access.o `test -f 'access.c' || echo './'`access.c mv -f .deps/cmetindex-bigendian.Tpo .deps/cmetindex-bigendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-univinterval.o -MD -MP -MF .deps/cmetindex-univinterval.Tpo -c -o cmetindex-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c mv -f .deps/cmetindex-mem.Tpo .deps/cmetindex-mem.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-interval.o -MD -MP -MF .deps/cmetindex-interval.Tpo -c -o cmetindex-interval.o `test -f 'interval.c' || echo './'`interval.c mv -f .deps/cmetindex-interval.Tpo .deps/cmetindex-interval.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-filestring.o -MD -MP -MF .deps/cmetindex-filestring.Tpo -c -o cmetindex-filestring.o `test -f 'filestring.c' || echo './'`filestring.c mv -f .deps/cmetindex-univinterval.Tpo .deps/cmetindex-univinterval.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-iit-read-univ.o -MD -MP -MF .deps/cmetindex-iit-read-univ.Tpo -c -o cmetindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c mv -f .deps/uniqscanl-stage3.Tpo .deps/uniqscanl-stage3.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-iit-read.o -MD -MP -MF .deps/cmetindex-iit-read.Tpo -c -o cmetindex-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c mv -f .deps/snpindex-sequence.Tpo .deps/snpindex-sequence.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-compress.o -MD -MP -MF .deps/cmetindex-compress.Tpo -c -o cmetindex-compress.o `test -f 'compress.c' || echo './'`compress.c mv -f .deps/cmetindex-access.Tpo .deps/cmetindex-access.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-compress-write.o -MD -MP -MF .deps/cmetindex-compress-write.Tpo -c -o cmetindex-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c mv -f .deps/snpindex-snpindex.Tpo .deps/snpindex-snpindex.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-popcount.o -MD -MP -MF .deps/cmetindex-popcount.Tpo -c -o cmetindex-popcount.o `test -f 'popcount.c' || echo './'`popcount.c mv -f .deps/cmetindex-filestring.Tpo .deps/cmetindex-filestring.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-genome128_hr.o -MD -MP -MF .deps/cmetindex-genome128_hr.Tpo -c -o cmetindex-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c mv -f .deps/cmetindex-compress.Tpo .deps/cmetindex-compress.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-bitpack64-read.o -MD -MP -MF .deps/cmetindex-bitpack64-read.Tpo -c -o cmetindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c mv -f .deps/cmetindex-compress-write.Tpo .deps/cmetindex-compress-write.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-bitpack64-readtwo.o -MD -MP -MF .deps/cmetindex-bitpack64-readtwo.Tpo -c -o cmetindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c mv -f .deps/cmetindex-iit-read-univ.Tpo .deps/cmetindex-iit-read-univ.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-bitpack64-write.o -MD -MP -MF .deps/cmetindex-bitpack64-write.Tpo -c -o cmetindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c mv -f .deps/cmetindex-popcount.Tpo .deps/cmetindex-popcount.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-indexdb.o -MD -MP -MF .deps/cmetindex-indexdb.Tpo -c -o cmetindex-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c mv -f .deps/cmetindex-bitpack64-readtwo.Tpo .deps/cmetindex-bitpack64-readtwo.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-indexdb-write.o -MD -MP -MF .deps/cmetindex-indexdb-write.Tpo -c -o cmetindex-indexdb-write.o `test -f 'indexdb-write.c' || echo './'`indexdb-write.c mv -f .deps/cmetindex-indexdb.Tpo .deps/cmetindex-indexdb.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-cmet.o -MD -MP -MF .deps/cmetindex-cmet.Tpo -c -o cmetindex-cmet.o `test -f 'cmet.c' || echo './'`cmet.c mv -f .deps/snpindex-iit-read.Tpo .deps/snpindex-iit-read.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-md5.o -MD -MP -MF .deps/cmetindex-md5.Tpo -c -o cmetindex-md5.o `test -f 'md5.c' || echo './'`md5.c mv -f .deps/snpindex-genome128_hr.Tpo .deps/snpindex-genome128_hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-bzip2.o -MD -MP -MF .deps/cmetindex-bzip2.Tpo -c -o cmetindex-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c mv -f .deps/cmetindex-bitpack64-read.Tpo .deps/cmetindex-bitpack64-read.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-sequence.o -MD -MP -MF .deps/cmetindex-sequence.Tpo -c -o cmetindex-sequence.o `test -f 'sequence.c' || echo './'`sequence.c mv -f .deps/cmetindex-bzip2.Tpo .deps/cmetindex-bzip2.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-genome.o -MD -MP -MF .deps/cmetindex-genome.Tpo -c -o cmetindex-genome.o `test -f 'genome.c' || echo './'`genome.c mv -f .deps/cmetindex-bitpack64-write.Tpo .deps/cmetindex-bitpack64-write.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-uintlist.o -MD -MP -MF .deps/cmetindex-uintlist.Tpo -c -o cmetindex-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c mv -f .deps/cmetindex-indexdb-write.Tpo .deps/cmetindex-indexdb-write.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-intlist.o -MD -MP -MF .deps/cmetindex-intlist.Tpo -c -o cmetindex-intlist.o `test -f 'intlist.c' || echo './'`intlist.c mv -f .deps/snpindex-genome.Tpo .deps/snpindex-genome.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-saca-k.o -MD -MP -MF .deps/cmetindex-saca-k.Tpo -c -o cmetindex-saca-k.o `test -f 'saca-k.c' || echo './'`saca-k.c mv -f .deps/cmetindex-md5.Tpo .deps/cmetindex-md5.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-uint8list.o -MD -MP -MF .deps/cmetindex-uint8list.Tpo -c -o cmetindex-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c mv -f .deps/cmetindex-uintlist.Tpo .deps/cmetindex-uintlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-bytecoding.o -MD -MP -MF .deps/cmetindex-bytecoding.Tpo -c -o cmetindex-bytecoding.o `test -f 'bytecoding.c' || echo './'`bytecoding.c mv -f .deps/cmetindex-uint8list.Tpo .deps/cmetindex-uint8list.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-sarray-write.o -MD -MP -MF .deps/cmetindex-sarray-write.Tpo -c -o cmetindex-sarray-write.o `test -f 'sarray-write.c' || echo './'`sarray-write.c mv -f .deps/cmetindex-bytecoding.Tpo .deps/cmetindex-bytecoding.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-list.o -MD -MP -MF .deps/cmetindex-list.Tpo -c -o cmetindex-list.o `test -f 'list.c' || echo './'`list.c mv -f .deps/cmetindex-sequence.Tpo .deps/cmetindex-sequence.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-datadir.o -MD -MP -MF .deps/cmetindex-datadir.Tpo -c -o cmetindex-datadir.o `test -f 'datadir.c' || echo './'`datadir.c mv -f .deps/cmetindex-saca-k.Tpo .deps/cmetindex-saca-k.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-getopt.o -MD -MP -MF .deps/cmetindex-getopt.Tpo -c -o cmetindex-getopt.o `test -f 'getopt.c' || echo './'`getopt.c mv -f .deps/cmetindex-cmet.Tpo .deps/cmetindex-cmet.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-getopt1.o -MD -MP -MF .deps/cmetindex-getopt1.Tpo -c -o cmetindex-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c mv -f .deps/cmetindex-intlist.Tpo .deps/cmetindex-intlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT cmetindex-cmetindex.o -MD -MP -MF .deps/cmetindex-cmetindex.Tpo -c -o cmetindex-cmetindex.o `test -f 'cmetindex.c' || echo './'`cmetindex.c mv -f .deps/cmetindex-getopt1.Tpo .deps/cmetindex-getopt1.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-except.o -MD -MP -MF .deps/atoiindex-except.Tpo -c -o atoiindex-except.o `test -f 'except.c' || echo './'`except.c mv -f .deps/cmetindex-list.Tpo .deps/cmetindex-list.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-assert.o -MD -MP -MF .deps/atoiindex-assert.Tpo -c -o atoiindex-assert.o `test -f 'assert.c' || echo './'`assert.c mv -f .deps/atoiindex-assert.Tpo .deps/atoiindex-assert.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-mem.o -MD -MP -MF .deps/atoiindex-mem.Tpo -c -o atoiindex-mem.o `test -f 'mem.c' || echo './'`mem.c mv -f .deps/cmetindex-datadir.Tpo .deps/cmetindex-datadir.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-littleendian.o -MD -MP -MF .deps/atoiindex-littleendian.Tpo -c -o atoiindex-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c mv -f .deps/atoiindex-except.Tpo .deps/atoiindex-except.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-bigendian.o -MD -MP -MF .deps/atoiindex-bigendian.Tpo -c -o atoiindex-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c mv -f .deps/atoiindex-littleendian.Tpo .deps/atoiindex-littleendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-genomicpos.o -MD -MP -MF .deps/atoiindex-genomicpos.Tpo -c -o atoiindex-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c mv -f .deps/cmetindex-getopt.Tpo .deps/cmetindex-getopt.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-stopwatch.o -MD -MP -MF .deps/atoiindex-stopwatch.Tpo -c -o atoiindex-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c mv -f .deps/atoiindex-stopwatch.Tpo .deps/atoiindex-stopwatch.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-access.o -MD -MP -MF .deps/atoiindex-access.Tpo -c -o atoiindex-access.o `test -f 'access.c' || echo './'`access.c mv -f .deps/atoiindex-genomicpos.Tpo .deps/atoiindex-genomicpos.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-univinterval.o -MD -MP -MF .deps/atoiindex-univinterval.Tpo -c -o atoiindex-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c mv -f .deps/atoiindex-mem.Tpo .deps/atoiindex-mem.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-interval.o -MD -MP -MF .deps/atoiindex-interval.Tpo -c -o atoiindex-interval.o `test -f 'interval.c' || echo './'`interval.c mv -f .deps/atoiindex-bigendian.Tpo .deps/atoiindex-bigendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-filestring.o -MD -MP -MF .deps/atoiindex-filestring.Tpo -c -o atoiindex-filestring.o `test -f 'filestring.c' || echo './'`filestring.c mv -f .deps/atoiindex-univinterval.Tpo .deps/atoiindex-univinterval.Po mv -f .deps/cmetindex-sarray-write.Tpo .deps/cmetindex-sarray-write.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-iit-read-univ.o -MD -MP -MF .deps/atoiindex-iit-read-univ.Tpo -c -o atoiindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-iit-read.o -MD -MP -MF .deps/atoiindex-iit-read.Tpo -c -o atoiindex-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c mv -f .deps/atoiindex-interval.Tpo .deps/atoiindex-interval.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-compress.o -MD -MP -MF .deps/atoiindex-compress.Tpo -c -o atoiindex-compress.o `test -f 'compress.c' || echo './'`compress.c mv -f .deps/atoiindex-access.Tpo .deps/atoiindex-access.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-compress-write.o -MD -MP -MF .deps/atoiindex-compress-write.Tpo -c -o atoiindex-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c mv -f .deps/atoiindex-filestring.Tpo .deps/atoiindex-filestring.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-popcount.o -MD -MP -MF .deps/atoiindex-popcount.Tpo -c -o atoiindex-popcount.o `test -f 'popcount.c' || echo './'`popcount.c mv -f .deps/cmetindex-iit-read.Tpo .deps/cmetindex-iit-read.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-genome128_hr.o -MD -MP -MF .deps/atoiindex-genome128_hr.Tpo -c -o atoiindex-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c mv -f .deps/cmetindex-cmetindex.Tpo .deps/cmetindex-cmetindex.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-bitpack64-read.o -MD -MP -MF .deps/atoiindex-bitpack64-read.Tpo -c -o atoiindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c mv -f .deps/atoiindex-compress.Tpo .deps/atoiindex-compress.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-bitpack64-readtwo.o -MD -MP -MF .deps/atoiindex-bitpack64-readtwo.Tpo -c -o atoiindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c mv -f .deps/atoiindex-compress-write.Tpo .deps/atoiindex-compress-write.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-bitpack64-write.o -MD -MP -MF .deps/atoiindex-bitpack64-write.Tpo -c -o atoiindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c mv -f .deps/atoiindex-bitpack64-readtwo.Tpo .deps/atoiindex-bitpack64-readtwo.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-indexdb.o -MD -MP -MF .deps/atoiindex-indexdb.Tpo -c -o atoiindex-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c mv -f .deps/atoiindex-popcount.Tpo .deps/atoiindex-popcount.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-indexdb-write.o -MD -MP -MF .deps/atoiindex-indexdb-write.Tpo -c -o atoiindex-indexdb-write.o `test -f 'indexdb-write.c' || echo './'`indexdb-write.c mv -f .deps/atoiindex-iit-read-univ.Tpo .deps/atoiindex-iit-read-univ.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-atoi.o -MD -MP -MF .deps/atoiindex-atoi.Tpo -c -o atoiindex-atoi.o `test -f 'atoi.c' || echo './'`atoi.c mv -f .deps/cmetindex-genome128_hr.Tpo .deps/cmetindex-genome128_hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-md5.o -MD -MP -MF .deps/atoiindex-md5.Tpo -c -o atoiindex-md5.o `test -f 'md5.c' || echo './'`md5.c mv -f .deps/cmetindex-genome.Tpo .deps/cmetindex-genome.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-bzip2.o -MD -MP -MF .deps/atoiindex-bzip2.Tpo -c -o atoiindex-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c mv -f .deps/atoiindex-bzip2.Tpo .deps/atoiindex-bzip2.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-sequence.o -MD -MP -MF .deps/atoiindex-sequence.Tpo -c -o atoiindex-sequence.o `test -f 'sequence.c' || echo './'`sequence.c mv -f .deps/atoiindex-bitpack64-read.Tpo .deps/atoiindex-bitpack64-read.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-genome.o -MD -MP -MF .deps/atoiindex-genome.Tpo -c -o atoiindex-genome.o `test -f 'genome.c' || echo './'`genome.c mv -f .deps/atoiindex-md5.Tpo .deps/atoiindex-md5.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-uintlist.o -MD -MP -MF .deps/atoiindex-uintlist.Tpo -c -o atoiindex-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c mv -f .deps/atoiindex-uintlist.Tpo .deps/atoiindex-uintlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-intlist.o -MD -MP -MF .deps/atoiindex-intlist.Tpo -c -o atoiindex-intlist.o `test -f 'intlist.c' || echo './'`intlist.c mv -f .deps/atoiindex-indexdb-write.Tpo .deps/atoiindex-indexdb-write.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-saca-k.o -MD -MP -MF .deps/atoiindex-saca-k.Tpo -c -o atoiindex-saca-k.o `test -f 'saca-k.c' || echo './'`saca-k.c mv -f .deps/atoiindex-intlist.Tpo .deps/atoiindex-intlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-uint8list.o -MD -MP -MF .deps/atoiindex-uint8list.Tpo -c -o atoiindex-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c mv -f .deps/atoiindex-atoi.Tpo .deps/atoiindex-atoi.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-bytecoding.o -MD -MP -MF .deps/atoiindex-bytecoding.Tpo -c -o atoiindex-bytecoding.o `test -f 'bytecoding.c' || echo './'`bytecoding.c mv -f .deps/atoiindex-indexdb.Tpo .deps/atoiindex-indexdb.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-sarray-write.o -MD -MP -MF .deps/atoiindex-sarray-write.Tpo -c -o atoiindex-sarray-write.o `test -f 'sarray-write.c' || echo './'`sarray-write.c mv -f .deps/atoiindex-bitpack64-write.Tpo .deps/atoiindex-bitpack64-write.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-list.o -MD -MP -MF .deps/atoiindex-list.Tpo -c -o atoiindex-list.o `test -f 'list.c' || echo './'`list.c mv -f .deps/atoiindex-sequence.Tpo .deps/atoiindex-sequence.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-datadir.o -MD -MP -MF .deps/atoiindex-datadir.Tpo -c -o atoiindex-datadir.o `test -f 'datadir.c' || echo './'`datadir.c mv -f .deps/atoiindex-uint8list.Tpo .deps/atoiindex-uint8list.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-getopt.o -MD -MP -MF .deps/atoiindex-getopt.Tpo -c -o atoiindex-getopt.o `test -f 'getopt.c' || echo './'`getopt.c mv -f .deps/atoiindex-saca-k.Tpo .deps/atoiindex-saca-k.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-getopt1.o -MD -MP -MF .deps/atoiindex-getopt1.Tpo -c -o atoiindex-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c mv -f .deps/atoiindex-bytecoding.Tpo .deps/atoiindex-bytecoding.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT atoiindex-atoiindex.o -MD -MP -MF .deps/atoiindex-atoiindex.Tpo -c -o atoiindex-atoiindex.o `test -f 'atoiindex.c' || echo './'`atoiindex.c mv -f .deps/atoiindex-getopt1.Tpo .deps/atoiindex-getopt1.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT sam_sort-except.o -MD -MP -MF .deps/sam_sort-except.Tpo -c -o sam_sort-except.o `test -f 'except.c' || echo './'`except.c mv -f .deps/atoiindex-datadir.Tpo .deps/atoiindex-datadir.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT sam_sort-assert.o -MD -MP -MF .deps/sam_sort-assert.Tpo -c -o sam_sort-assert.o `test -f 'assert.c' || echo './'`assert.c mv -f .deps/sam_sort-assert.Tpo .deps/sam_sort-assert.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT sam_sort-mem.o -MD -MP -MF .deps/sam_sort-mem.Tpo -c -o sam_sort-mem.o `test -f 'mem.c' || echo './'`mem.c mv -f .deps/sam_sort-except.Tpo .deps/sam_sort-except.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT sam_sort-littleendian.o -MD -MP -MF .deps/sam_sort-littleendian.Tpo -c -o sam_sort-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c mv -f .deps/sam_sort-littleendian.Tpo .deps/sam_sort-littleendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT sam_sort-bigendian.o -MD -MP -MF .deps/sam_sort-bigendian.Tpo -c -o sam_sort-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c mv -f .deps/atoiindex-list.Tpo .deps/atoiindex-list.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT sam_sort-intlist.o -MD -MP -MF .deps/sam_sort-intlist.Tpo -c -o sam_sort-intlist.o `test -f 'intlist.c' || echo './'`intlist.c mv -f .deps/sam_sort-mem.Tpo .deps/sam_sort-mem.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT sam_sort-list.o -MD -MP -MF .deps/sam_sort-list.Tpo -c -o sam_sort-list.o `test -f 'list.c' || echo './'`list.c mv -f .deps/atoiindex-getopt.Tpo .deps/atoiindex-getopt.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT sam_sort-stopwatch.o -MD -MP -MF .deps/sam_sort-stopwatch.Tpo -c -o sam_sort-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c mv -f .deps/sam_sort-bigendian.Tpo .deps/sam_sort-bigendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT sam_sort-access.o -MD -MP -MF .deps/sam_sort-access.Tpo -c -o sam_sort-access.o `test -f 'access.c' || echo './'`access.c mv -f .deps/sam_sort-stopwatch.Tpo .deps/sam_sort-stopwatch.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT sam_sort-univinterval.o -MD -MP -MF .deps/sam_sort-univinterval.Tpo -c -o sam_sort-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c mv -f .deps/sam_sort-univinterval.Tpo .deps/sam_sort-univinterval.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT sam_sort-interval.o -MD -MP -MF .deps/sam_sort-interval.Tpo -c -o sam_sort-interval.o `test -f 'interval.c' || echo './'`interval.c mv -f .deps/atoiindex-sarray-write.Tpo .deps/atoiindex-sarray-write.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT sam_sort-uintlist.o -MD -MP -MF .deps/sam_sort-uintlist.Tpo -c -o sam_sort-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c mv -f .deps/sam_sort-access.Tpo .deps/sam_sort-access.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT sam_sort-filestring.o -MD -MP -MF .deps/sam_sort-filestring.Tpo -c -o sam_sort-filestring.o `test -f 'filestring.c' || echo './'`filestring.c mv -f .deps/sam_sort-list.Tpo .deps/sam_sort-list.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT sam_sort-iit-read-univ.o -MD -MP -MF .deps/sam_sort-iit-read-univ.Tpo -c -o sam_sort-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c mv -f .deps/atoiindex-atoiindex.Tpo .deps/atoiindex-atoiindex.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT sam_sort-iit-read.o -MD -MP -MF .deps/sam_sort-iit-read.Tpo -c -o sam_sort-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c mv -f .deps/sam_sort-uintlist.Tpo .deps/sam_sort-uintlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT sam_sort-samheader.o -MD -MP -MF .deps/sam_sort-samheader.Tpo -c -o sam_sort-samheader.o `test -f 'samheader.c' || echo './'`samheader.c mv -f .deps/sam_sort-interval.Tpo .deps/sam_sort-interval.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT sam_sort-samread.o -MD -MP -MF .deps/sam_sort-samread.Tpo -c -o sam_sort-samread.o `test -f 'samread.c' || echo './'`samread.c mv -f .deps/sam_sort-intlist.Tpo .deps/sam_sort-intlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT sam_sort-datadir.o -MD -MP -MF .deps/sam_sort-datadir.Tpo -c -o sam_sort-datadir.o `test -f 'datadir.c' || echo './'`datadir.c mv -f .deps/sam_sort-filestring.Tpo .deps/sam_sort-filestring.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT sam_sort-getopt.o -MD -MP -MF .deps/sam_sort-getopt.Tpo -c -o sam_sort-getopt.o `test -f 'getopt.c' || echo './'`getopt.c mv -f .deps/sam_sort-datadir.Tpo .deps/sam_sort-datadir.Po mv -f .deps/sam_sort-samheader.Tpo .deps/sam_sort-samheader.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT sam_sort-getopt1.o -MD -MP -MF .deps/sam_sort-getopt1.Tpo -c -o sam_sort-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -MT sam_sort-sam_sort.o -MD -MP -MF .deps/sam_sort-sam_sort.Tpo -c -o sam_sort-sam_sort.o `test -f 'sam_sort.c' || echo './'`sam_sort.c mv -f .deps/sam_sort-getopt1.Tpo .deps/sam_sort-getopt1.Po /bin/sh ../libtool --tag=CC --mode=link cc -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -o gmap gmap-except.o gmap-assert.o gmap-mem.o gmap-intlist.o gmap-list.o gmap-littleendian.o gmap-bigendian.o gmap-univinterval.o gmap-interval.o gmap-uintlist.o gmap-stopwatch.o gmap-access.o gmap-filestring.o gmap-iit-read-univ.o gmap-iit-read.o gmap-md5.o gmap-bzip2.o gmap-sequence.o gmap-reader.o gmap-genomicpos.o gmap-compress.o gmap-compress-write.o gmap-gbuffer.o gmap-genome.o gmap-popcount.o gmap-genome128_hr.o gmap-genome_sites.o gmap-genome-write.o gmap-bitpack64-read.o gmap-bitpack64-readtwo.o gmap-indexdb.o gmap-indexdb_hr.o gmap-oligo.o gmap-block.o gmap-chrom.o gmap-segmentpos.o gmap-chrnum.o gmap-uinttable.o gmap-gregion.o gmap-match.o gmap-matchpool.o gmap-diagnostic.o gmap-stage1.o gmap-diag.o gmap-diagpool.o gmap-cmet.o gmap-atoi.o gmap-orderstat.o gmap-oligoindex_hr.o gmap-intron.o gmap-maxent.o gmap-maxent_hr.o gmap-pair.o gmap-pairpool.o gmap-cellpool.o gmap-stage2.o gmap-doublelist.o gmap-smooth.o gmap-splicestringpool.o gmap-splicetrie_build.o gmap-splicetrie.o gmap-boyer-moore.o gmap-dynprog.o gmap-dynprog_simd.o gmap-dynprog_single.o gmap-dynprog_genome.o gmap-dynprog_cdna.o gmap-dynprog_end.o gmap-translation.o gmap-pbinom.o gmap-changepoint.o gmap-stage3.o gmap-request.o gmap-result.o gmap-output.o gmap-inbuffer.o gmap-samheader.o gmap-outbuffer.o gmap-chimera.o gmap-datadir.o gmap-getopt.o gmap-getopt1.o gmap-gmap.o -lz -lbz2 -lm libtool: link: cc -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -pipe -O2 -fno-strict-aliasing -o gmap gmap-except.o gmap-assert.o gmap-mem.o gmap-intlist.o gmap-list.o gmap-littleendian.o gmap-bigendian.o gmap-univinterval.o gmap-interval.o gmap-uintlist.o gmap-stopwatch.o gmap-access.o gmap-filestring.o gmap-iit-read-univ.o gmap-iit-read.o gmap-md5.o gmap-bzip2.o gmap-sequence.o gmap-reader.o gmap-genomicpos.o gmap-compress.o gmap-compress-write.o gmap-gbuffer.o gmap-genome.o gmap-popcount.o gmap-genome128_hr.o gmap-genome_sites.o gmap-genome-write.o gmap-bitpack64-read.o gmap-bitpack64-readtwo.o gmap-indexdb.o gmap-indexdb_hr.o gmap-oligo.o gmap-block.o gmap-chrom.o gmap-segmentpos.o gmap-chrnum.o gmap-uinttable.o gmap-gregion.o gmap-match.o gmap-matchpool.o gmap-diagnostic.o gmap-stage1.o gmap-diag.o gmap-diagpool.o gmap-cmet.o gmap-atoi.o gmap-orderstat.o gmap-oligoindex_hr.o gmap-intron.o gmap-maxent.o gmap-maxent_hr.o gmap-pair.o gmap-pairpool.o gmap-cellpool.o gmap-stage2.o gmap-doublelist.o gmap-smooth.o gmap-splicestringpool.o gmap-splicetrie_build.o gmap-splicetrie.o gmap-boyer-moore.o gmap-dynprog.o gmap-dynprog_simd.o gmap-dynprog_single.o gmap-dynprog_genome.o gmap-dynprog_cdna.o gmap-dynprog_end.o gmap-translation.o gmap-pbinom.o gmap-changepoint.o gmap-stage3.o gmap-request.o gmap-result.o gmap-output.o gmap-inbuffer.o gmap-samheader.o gmap-outbuffer.o gmap-chimera.o gmap-datadir.o gmap-getopt.o gmap-getopt1.o gmap-gmap.o -lz -lbz2 -lm -pthread mv -f .deps/sam_sort-getopt.Tpo .deps/sam_sort-getopt.Po /bin/sh ../libtool --tag=CC --mode=link cc -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -o gmapl gmapl-except.o gmapl-assert.o gmapl-mem.o gmapl-intlist.o gmapl-list.o gmapl-littleendian.o gmapl-bigendian.o gmapl-univinterval.o gmapl-interval.o gmapl-uintlist.o gmapl-stopwatch.o gmapl-access.o gmapl-filestring.o gmapl-iit-read-univ.o gmapl-iit-read.o gmapl-md5.o gmapl-bzip2.o gmapl-sequence.o gmapl-reader.o gmapl-genomicpos.o gmapl-compress.o gmapl-compress-write.o gmapl-gbuffer.o gmapl-genome.o gmapl-popcount.o gmapl-genome128_hr.o gmapl-genome_sites.o gmapl-genome-write.o gmapl-bitpack64-read.o gmapl-bitpack64-readtwo.o gmapl-indexdb.o gmapl-indexdb_hr.o gmapl-oligo.o gmapl-block.o gmapl-chrom.o gmapl-segmentpos.o gmapl-chrnum.o gmapl-uinttable.o gmapl-gregion.o gmapl-match.o gmapl-matchpool.o gmapl-diagnostic.o gmapl-stage1.o gmapl-diag.o gmapl-diagpool.o gmapl-cmet.o gmapl-atoi.o gmapl-orderstat.o gmapl-oligoindex_hr.o gmapl-intron.o gmapl-maxent.o gmapl-maxent_hr.o gmapl-pair.o gmapl-pairpool.o gmapl-cellpool.o gmapl-stage2.o gmapl-doublelist.o gmapl-smooth.o gmapl-splicestringpool.o gmapl-splicetrie_build.o gmapl-splicetrie.o gmapl-boyer-moore.o gmapl-dynprog.o gmapl-dynprog_simd.o gmapl-dynprog_single.o gmapl-dynprog_genome.o gmapl-dynprog_cdna.o gmapl-dynprog_end.o gmapl-translation.o gmapl-pbinom.o gmapl-changepoint.o gmapl-stage3.o gmapl-request.o gmapl-result.o gmapl-output.o gmapl-inbuffer.o gmapl-samheader.o gmapl-outbuffer.o gmapl-chimera.o gmapl-datadir.o gmapl-getopt.o gmapl-getopt1.o gmapl-gmap.o -lz -lbz2 -lm libtool: link: cc -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -o gmapl gmapl-except.o gmapl-assert.o gmapl-mem.o gmapl-intlist.o gmapl-list.o gmapl-littleendian.o gmapl-bigendian.o gmapl-univinterval.o gmapl-interval.o gmapl-uintlist.o gmapl-stopwatch.o gmapl-access.o gmapl-filestring.o gmapl-iit-read-univ.o gmapl-iit-read.o gmapl-md5.o gmapl-bzip2.o gmapl-sequence.o gmapl-reader.o gmapl-genomicpos.o gmapl-compress.o gmapl-compress-write.o gmapl-gbuffer.o gmapl-genome.o gmapl-popcount.o gmapl-genome128_hr.o gmapl-genome_sites.o gmapl-genome-write.o gmapl-bitpack64-read.o gmapl-bitpack64-readtwo.o gmapl-indexdb.o gmapl-indexdb_hr.o gmapl-oligo.o gmapl-block.o gmapl-chrom.o gmapl-segmentpos.o gmapl-chrnum.o gmapl-uinttable.o gmapl-gregion.o gmapl-match.o gmapl-matchpool.o gmapl-diagnostic.o gmapl-stage1.o gmapl-diag.o gmapl-diagpool.o gmapl-cmet.o gmapl-atoi.o gmapl-orderstat.o gmapl-oligoindex_hr.o gmapl-intron.o gmapl-maxent.o gmapl-maxent_hr.o gmapl-pair.o gmapl-pairpool.o gmapl-cellpool.o gmapl-stage2.o gmapl-doublelist.o gmapl-smooth.o gmapl-splicestringpool.o gmapl-splicetrie_build.o gmapl-splicetrie.o gmapl-boyer-moore.o gmapl-dynprog.o gmapl-dynprog_simd.o gmapl-dynprog_single.o gmapl-dynprog_genome.o gmapl-dynprog_cdna.o gmapl-dynprog_end.o gmapl-translation.o gmapl-pbinom.o gmapl-changepoint.o gmapl-stage3.o gmapl-request.o gmapl-result.o gmapl-output.o gmapl-inbuffer.o gmapl-samheader.o gmapl-outbuffer.o gmapl-chimera.o gmapl-datadir.o gmapl-getopt.o gmapl-getopt1.o gmapl-gmap.o -lz -lbz2 -lm -pthread mv -f .deps/atoiindex-iit-read.Tpo .deps/atoiindex-iit-read.Po /bin/sh ../libtool --tag=CC --mode=link cc -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -o get-genome get_genome-except.o get_genome-assert.o get_genome-mem.o get_genome-intlist.o get_genome-list.o get_genome-littleendian.o get_genome-bigendian.o get_genome-univinterval.o get_genome-interval.o get_genome-uintlist.o get_genome-stopwatch.o get_genome-access.o get_genome-filestring.o get_genome-iit-read-univ.o get_genome-iit-read.o get_genome-md5.o get_genome-bzip2.o get_genome-sequence.o get_genome-genome.o get_genome-genomicpos.o get_genome-chrom.o get_genome-chrnum.o get_genome-datadir.o get_genome-parserange.o get_genome-getopt.o get_genome-getopt1.o get_genome-get-genome.o -lz -lbz2 -lm /bin/sh ../libtool --tag=CC --mode=link cc -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -o gmapindex gmapindex-except.o gmapindex-assert.o gmapindex-mem.o gmapindex-intlist.o gmapindex-list.o gmapindex-littleendian.o gmapindex-bigendian.o gmapindex-univinterval.o gmapindex-interval.o gmapindex-uintlist.o gmapindex-stopwatch.o gmapindex-access.o gmapindex-filestring.o gmapindex-iit-read-univ.o gmapindex-iit-write-univ.o gmapindex-iit-read.o gmapindex-md5.o gmapindex-bzip2.o gmapindex-sequence.o gmapindex-genome.o gmapindex-genomicpos.o gmapindex-compress-write.o gmapindex-genome-write.o gmapindex-compress.o gmapindex-popcount.o gmapindex-genome128_hr.o gmapindex-bitpack64-read.o gmapindex-bitpack64-readtwo.o gmapindex-bitpack64-access.o gmapindex-bitpack64-write.o gmapindex-indexdb.o gmapindex-indexdb-write.o gmapindex-table.o gmapindex-tableuint.o gmapindex-tableuint8.o gmapindex-chrom.o gmapindex-segmentpos.o gmapindex-saca-k.o gmapindex-uint8list.o gmapindex-bytecoding.o gmapindex-sarray-write.o gmapindex-gmapindex.o -lz -lbz2 -lm libtool: link: cc -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -o get-genome get_genome-except.o get_genome-assert.o get_genome-mem.o get_genome-intlist.o get_genome-list.o get_genome-littleendian.o get_genome-bigendian.o get_genome-univinterval.o get_genome-interval.o get_genome-uintlist.o get_genome-stopwatch.o get_genome-access.o get_genome-filestring.o get_genome-iit-read-univ.o get_genome-iit-read.o get_genome-md5.o get_genome-bzip2.o get_genome-sequence.o get_genome-genome.o get_genome-genomicpos.o get_genome-chrom.o get_genome-chrnum.o get_genome-datadir.o get_genome-parserange.o get_genome-getopt.o get_genome-getopt1.o get_genome-get-genome.o -lz -lbz2 -lm -pthread libtool: link: cc -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -o gmapindex gmapindex-except.o gmapindex-assert.o gmapindex-mem.o gmapindex-intlist.o gmapindex-list.o gmapindex-littleendian.o gmapindex-bigendian.o gmapindex-univinterval.o gmapindex-interval.o gmapindex-uintlist.o gmapindex-stopwatch.o gmapindex-access.o gmapindex-filestring.o gmapindex-iit-read-univ.o gmapindex-iit-write-univ.o gmapindex-iit-read.o gmapindex-md5.o gmapindex-bzip2.o gmapindex-sequence.o gmapindex-genome.o gmapindex-genomicpos.o gmapindex-compress-write.o gmapindex-genome-write.o gmapindex-compress.o gmapindex-popcount.o gmapindex-genome128_hr.o gmapindex-bitpack64-read.o gmapindex-bitpack64-readtwo.o gmapindex-bitpack64-access.o gmapindex-bitpack64-write.o gmapindex-indexdb.o gmapindex-indexdb-write.o gmapindex-table.o gmapindex-tableuint.o gmapindex-tableuint8.o gmapindex-chrom.o gmapindex-segmentpos.o gmapindex-saca-k.o gmapindex-uint8list.o gmapindex-bytecoding.o gmapindex-sarray-write.o gmapindex-gmapindex.o -lz -lbz2 -lm -pthread mv -f .deps/atoiindex-genome128_hr.Tpo .deps/atoiindex-genome128_hr.Po /bin/sh ../libtool --tag=CC --mode=link cc -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -o iit_store iit_store-except.o iit_store-assert.o iit_store-mem.o iit_store-intlist.o iit_store-list.o iit_store-littleendian.o iit_store-bigendian.o iit_store-univinterval.o iit_store-interval.o iit_store-uintlist.o iit_store-stopwatch.o iit_store-access.o iit_store-doublelist.o iit_store-iit-write-univ.o iit_store-iit-write.o iit_store-tableint.o iit_store-table.o iit_store-chrom.o iit_store-getopt.o iit_store-getopt1.o iit_store-iit_store.o -lm /bin/sh ../libtool --tag=CC --mode=link cc -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -o iit_get iit_get-except.o iit_get-assert.o iit_get-mem.o iit_get-intlist.o iit_get-list.o iit_get-littleendian.o iit_get-bigendian.o iit_get-univinterval.o iit_get-interval.o iit_get-uintlist.o iit_get-stopwatch.o iit_get-access.o iit_get-filestring.o iit_get-iit-read-univ.o iit_get-iit-read.o iit_get-parserange.o iit_get-getopt.o iit_get-getopt1.o iit_get-iit_get.o -lm /bin/sh ../libtool --tag=CC --mode=link cc -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -o iit_dump iit_dump-except.o iit_dump-assert.o iit_dump-mem.o iit_dump-littleendian.o iit_dump-bigendian.o iit_dump-intlist.o iit_dump-list.o iit_dump-univinterval.o iit_dump-interval.o iit_dump-uintlist.o iit_dump-stopwatch.o iit_dump-access.o iit_dump-filestring.o iit_dump-iit-read-univ.o iit_dump-iit-read.o iit_dump-getopt.o iit_dump-getopt1.o iit_dump-iit_dump.o -lm libtool: link: cc -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -o iit_store iit_store-except.o iit_store-assert.o iit_store-mem.o iit_store-intlist.o iit_store-list.o iit_store-littleendian.o iit_store-bigendian.o iit_store-univinterval.o iit_store-interval.o iit_store-uintlist.o iit_store-stopwatch.o iit_store-access.o iit_store-doublelist.o iit_store-iit-write-univ.o iit_store-iit-write.o iit_store-tableint.o iit_store-table.o iit_store-chrom.o iit_store-getopt.o iit_store-getopt1.o iit_store-iit_store.o -lm -pthread libtool: link: cc -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -o iit_get iit_get-except.o iit_get-assert.o iit_get-mem.o iit_get-intlist.o iit_get-list.o iit_get-littleendian.o iit_get-bigendian.o iit_get-univinterval.o iit_get-interval.o iit_get-uintlist.o iit_get-stopwatch.o iit_get-access.o iit_get-filestring.o iit_get-iit-read-univ.o iit_get-iit-read.o iit_get-parserange.o iit_get-getopt.o iit_get-getopt1.o iit_get-iit_get.o -lm -pthread mv -f .deps/sam_sort-samread.Tpo .deps/sam_sort-samread.Po /bin/sh ../libtool --tag=CC --mode=link cc -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -o gsnap gsnap-except.o gsnap-assert.o gsnap-mem.o gsnap-intlist.o gsnap-list.o gsnap-littleendian.o gsnap-bigendian.o gsnap-univinterval.o gsnap-interval.o gsnap-uintlist.o gsnap-stopwatch.o gsnap-access.o gsnap-filestring.o gsnap-iit-read-univ.o gsnap-iit-read.o gsnap-md5.o gsnap-bzip2.o gsnap-sequence.o gsnap-reader.o gsnap-genomicpos.o gsnap-compress.o gsnap-genome.o gsnap-popcount.o gsnap-genome128_hr.o gsnap-genome_sites.o gsnap-bitpack64-read.o gsnap-bitpack64-readtwo.o gsnap-indexdb.o gsnap-indexdb_hr.o gsnap-oligo.o gsnap-chrom.o gsnap-segmentpos.o gsnap-chrnum.o gsnap-maxent_hr.o gsnap-samprint.o gsnap-mapq.o gsnap-shortread.o gsnap-substring.o gsnap-junction.o gsnap-stage3hr.o gsnap-spanningelt.o gsnap-cmet.o gsnap-atoi.o gsnap-maxent.o gsnap-pair.o gsnap-pairpool.o gsnap-diag.o gsnap-diagpool.o gsnap-orderstat.o gsnap-oligoindex_hr.o gsnap-cellpool.o gsnap-stage2.o gsnap-intron.o gsnap-boyer-moore.o gsnap-changepoint.o gsnap-pbinom.o gsnap-dynprog.o gsnap-dynprog_simd.o gsnap-dynprog_single.o gsnap-dynprog_genome.o gsnap-dynprog_cdna.o gsnap-dynprog_end.o gsnap-gbuffer.o gsnap-translation.o gsnap-doublelist.o gsnap-smooth.o gsnap-chimera.o gsnap-stage3.o gsnap-splicestringpool.o gsnap-splicetrie_build.o gsnap-splicetrie.o gsnap-splice.o gsnap-indel.o gsnap-bitpack64-access.o gsnap-bytecoding.o gsnap-univdiag.o gsnap-sarray-read.o gsnap-stage1hr.o gsnap-request.o gsnap-resulthr.o gsnap-output.o gsnap-inbuffer.o gsnap-samheader.o gsnap-outbuffer.o gsnap-datadir.o gsnap-getopt.o gsnap-getopt1.o gsnap-gsnap.o -lz -lbz2 -lm /bin/sh ../libtool --tag=CC --mode=link cc -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -o gsnapl gsnapl-except.o gsnapl-assert.o gsnapl-mem.o gsnapl-intlist.o gsnapl-list.o gsnapl-littleendian.o gsnapl-bigendian.o gsnapl-univinterval.o gsnapl-interval.o gsnapl-uintlist.o gsnapl-uint8list.o gsnapl-stopwatch.o gsnapl-access.o gsnapl-filestring.o gsnapl-iit-read-univ.o gsnapl-iit-read.o gsnapl-md5.o gsnapl-bzip2.o gsnapl-sequence.o gsnapl-reader.o gsnapl-genomicpos.o gsnapl-compress.o gsnapl-genome.o gsnapl-popcount.o gsnapl-genome128_hr.o gsnapl-genome_sites.o gsnapl-bitpack64-read.o gsnapl-bitpack64-readtwo.o gsnapl-indexdb.o gsnapl-indexdb_hr.o gsnapl-oligo.o gsnapl-chrom.o gsnapl-segmentpos.o gsnapl-chrnum.o gsnapl-maxent_hr.o gsnapl-samprint.o gsnapl-mapq.o gsnapl-shortread.o gsnapl-substring.o gsnapl-junction.o gsnapl-stage3hr.o gsnapl-spanningelt.o gsnapl-cmet.o gsnapl-atoi.o gsnapl-maxent.o gsnapl-pair.o gsnapl-pairpool.o gsnapl-diag.o gsnapl-diagpool.o gsnapl-orderstat.o gsnapl-oligoindex_hr.o gsnapl-cellpool.o gsnapl-stage2.o gsnapl-intron.o gsnapl-boyer-moore.o gsnapl-changepoint.o gsnapl-pbinom.o gsnapl-dynprog.o gsnapl-dynprog_simd.o gsnapl-dynprog_single.o gsnapl-dynprog_genome.o gsnapl-dynprog_cdna.o gsnapl-dynprog_end.o gsnapl-gbuffer.o gsnapl-translation.o gsnapl-doublelist.o gsnapl-smooth.o gsnapl-chimera.o gsnapl-stage3.o gsnapl-splicestringpool.o gsnapl-splicetrie_build.o gsnapl-splicetrie.o gsnapl-splice.o gsnapl-indel.o gsnapl-bitpack64-access.o gsnapl-stage1hr.o gsnapl-request.o gsnapl-resulthr.o gsnapl-output.o gsnapl-inbuffer.o gsnapl-samheader.o gsnapl-outbuffer.o gsnapl-datadir.o gsnapl-getopt.o gsnapl-getopt1.o gsnapl-gsnap.o -lz -lbz2 -lm libtool: link: cc -pthread -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -o iit_dump iit_dump-except.o iit_dump-assert.o iit_dump-mem.o iit_dump-littleendian.o iit_dump-bigendian.o iit_dump-intlist.o iit_dump-list.o iit_dump-univinterval.o iit_dump-interval.o iit_dump-uintlist.o iit_dump-stopwatch.o iit_dump-access.o iit_dump-filestring.o iit_dump-iit-read-univ.o iit_dump-iit-read.o iit_dump-getopt.o iit_dump-getopt1.o iit_dump-iit_dump.o -lm -pthread /bin/sh ../libtool --tag=CC --mode=link cc -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -o uniqscan uniqscan-except.o uniqscan-assert.o uniqscan-mem.o uniqscan-intlist.o uniqscan-list.o uniqscan-littleendian.o uniqscan-bigendian.o uniqscan-univinterval.o uniqscan-interval.o uniqscan-uintlist.o uniqscan-stopwatch.o uniqscan-access.o uniqscan-filestring.o uniqscan-iit-read-univ.o uniqscan-iit-read.o uniqscan-md5.o uniqscan-bzip2.o uniqscan-sequence.o uniqscan-reader.o uniqscan-genomicpos.o uniqscan-compress.o uniqscan-genome.o uniqscan-popcount.o uniqscan-genome128_hr.o uniqscan-genome_sites.o uniqscan-bitpack64-read.o uniqscan-bitpack64-readtwo.o uniqscan-indexdb.o uniqscan-indexdb_hr.o uniqscan-oligo.o uniqscan-chrom.o uniqscan-segmentpos.o uniqscan-chrnum.o uniqscan-maxent_hr.o uniqscan-mapq.o uniqscan-shortread.o uniqscan-substring.o uniqscan-junction.o uniqscan-stage3hr.o uniqscan-spanningelt.o uniqscan-cmet.o uniqscan-atoi.o uniqscan-maxent.o uniqscan-pair.o uniqscan-pairpool.o uniqscan-diag.o uniqscan-diagpool.o uniqscan-orderstat.o uniqscan-oligoindex_hr.o uniqscan-cellpool.o uniqscan-stage2.o uniqscan-intron.o uniqscan-boyer-moore.o uniqscan-changepoint.o uniqscan-pbinom.o uniqscan-dynprog.o uniqscan-dynprog_simd.o uniqscan-dynprog_single.o uniqscan-dynprog_genome.o uniqscan-dynprog_cdna.o uniqscan-dynprog_end.o uniqscan-translation.o uniqscan-doublelist.o uniqscan-smooth.o uniqscan-chimera.o uniqscan-stage3.o uniqscan-splicestringpool.o uniqscan-splicetrie_build.o uniqscan-splicetrie.o uniqscan-splice.o uniqscan-indel.o uniqscan-bitpack64-access.o uniqscan-bytecoding.o uniqscan-univdiag.o uniqscan-sarray-read.o uniqscan-stage1hr.o uniqscan-resulthr.o uniqscan-datadir.o uniqscan-getopt.o uniqscan-getopt1.o uniqscan-uniqscan.o -lz -lbz2 -lm /bin/sh ../libtool --tag=CC --mode=link cc -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -o snpindex snpindex-except.o snpindex-assert.o snpindex-mem.o snpindex-intlist.o snpindex-list.o snpindex-littleendian.o snpindex-bigendian.o snpindex-univinterval.o snpindex-interval.o snpindex-uintlist.o snpindex-stopwatch.o snpindex-access.o snpindex-filestring.o snpindex-iit-read-univ.o snpindex-iit-read.o snpindex-genomicpos.o snpindex-compress.o snpindex-compress-write.o snpindex-popcount.o snpindex-genome128_hr.o snpindex-bitpack64-read.o snpindex-bitpack64-readtwo.o snpindex-bitpack64-write.o snpindex-indexdb.o snpindex-indexdb-write.o snpindex-chrom.o snpindex-md5.o snpindex-bzip2.o snpindex-sequence.o snpindex-genome.o snpindex-datadir.o snpindex-getopt.o snpindex-getopt1.o snpindex-snpindex.o -lz -lbz2 -lm libtool: link: cc -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -o gsnap gsnap-except.o gsnap-assert.o gsnap-mem.o gsnap-intlist.o gsnap-list.o gsnap-littleendian.o gsnap-bigendian.o gsnap-univinterval.o gsnap-interval.o gsnap-uintlist.o gsnap-stopwatch.o gsnap-access.o gsnap-filestring.o gsnap-iit-read-univ.o gsnap-iit-read.o gsnap-md5.o gsnap-bzip2.o gsnap-sequence.o gsnap-reader.o gsnap-genomicpos.o gsnap-compress.o gsnap-genome.o gsnap-popcount.o gsnap-genome128_hr.o gsnap-genome_sites.o gsnap-bitpack64-read.o gsnap-bitpack64-readtwo.o gsnap-indexdb.o gsnap-indexdb_hr.o gsnap-oligo.o gsnap-chrom.o gsnap-segmentpos.o gsnap-chrnum.o gsnap-maxent_hr.o gsnap-samprint.o gsnap-mapq.o gsnap-shortread.o gsnap-substring.o gsnap-junction.o gsnap-stage3hr.o gsnap-spanningelt.o gsnap-cmet.o gsnap-atoi.o gsnap-maxent.o gsnap-pair.o gsnap-pairpool.o gsnap-diag.o gsnap-diagpool.o gsnap-orderstat.o gsnap-oligoindex_hr.o gsnap-cellpool.o gsnap-stage2.o gsnap-intron.o gsnap-boyer-moore.o gsnap-changepoint.o gsnap-pbinom.o gsnap-dynprog.o gsnap-dynprog_simd.o gsnap-dynprog_single.o gsnap-dynprog_genome.o gsnap-dynprog_cdna.o gsnap-dynprog_end.o gsnap-gbuffer.o gsnap-translation.o gsnap-doublelist.o gsnap-smooth.o gsnap-chimera.o gsnap-stage3.o gsnap-splicestringpool.o gsnap-splicetrie_build.o gsnap-splicetrie.o gsnap-splice.o gsnap-indel.o gsnap-bitpack64-access.o gsnap-bytecoding.o gsnap-univdiag.o gsnap-sarray-read.o gsnap-stage1hr.o gsnap-request.o gsnap-resulthr.o gsnap-output.o gsnap-inbuffer.o gsnap-samheader.o gsnap-outbuffer.o gsnap-datadir.o gsnap-getopt.o gsnap-getopt1.o gsnap-gsnap.o -lz -lbz2 -lm -pthread libtool: link: cc -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -o gsnapl gsnapl-except.o gsnapl-assert.o gsnapl-mem.o gsnapl-intlist.o gsnapl-list.o gsnapl-littleendian.o gsnapl-bigendian.o gsnapl-univinterval.o gsnapl-interval.o gsnapl-uintlist.o gsnapl-uint8list.o gsnapl-stopwatch.o gsnapl-access.o gsnapl-filestring.o gsnapl-iit-read-univ.o gsnapl-iit-read.o gsnapl-md5.o gsnapl-bzip2.o gsnapl-sequence.o gsnapl-reader.o gsnapl-genomicpos.o gsnapl-compress.o gsnapl-genome.o gsnapl-popcount.o gsnapl-genome128_hr.o gsnapl-genome_sites.o gsnapl-bitpack64-read.o gsnapl-bitpack64-readtwo.o gsnapl-indexdb.o gsnapl-indexdb_hr.o gsnapl-oligo.o gsnapl-chrom.o gsnapl-segmentpos.o gsnapl-chrnum.o gsnapl-maxent_hr.o gsnapl-samprint.o gsnapl-mapq.o gsnapl-shortread.o gsnapl-substring.o gsnapl-junction.o gsnapl-stage3hr.o gsnapl-spanningelt.o gsnapl-cmet.o gsnapl-atoi.o gsnapl-maxent.o gsnapl-pair.o gsnapl-pairpool.o gsnapl-diag.o gsnapl-diagpool.o gsnapl-orderstat.o gsnapl-oligoindex_hr.o gsnapl-cellpool.o gsnapl-stage2.o gsnapl-intron.o gsnapl-boyer-moore.o gsnapl-changepoint.o gsnapl-pbinom.o gsnapl-dynprog.o gsnapl-dynprog_simd.o gsnapl-dynprog_single.o gsnapl-dynprog_genome.o gsnapl-dynprog_cdna.o gsnapl-dynprog_end.o gsnapl-gbuffer.o gsnapl-translation.o gsnapl-doublelist.o gsnapl-smooth.o gsnapl-chimera.o gsnapl-stage3.o gsnapl-splicestringpool.o gsnapl-splicetrie_build.o gsnapl-splicetrie.o gsnapl-splice.o gsnapl-indel.o gsnapl-bitpack64-access.o gsnapl-stage1hr.o gsnapl-request.o gsnapl-resulthr.o gsnapl-output.o gsnapl-inbuffer.o gsnapl-samheader.o gsnapl-outbuffer.o gsnapl-datadir.o gsnapl-getopt.o gsnapl-getopt1.o gsnapl-gsnap.o -lz -lbz2 -lm -pthread mv -f .deps/sam_sort-iit-read-univ.Tpo .deps/sam_sort-iit-read-univ.Po /bin/sh ../libtool --tag=CC --mode=link cc -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -o cmetindex cmetindex-except.o cmetindex-assert.o cmetindex-mem.o cmetindex-littleendian.o cmetindex-bigendian.o cmetindex-genomicpos.o cmetindex-stopwatch.o cmetindex-access.o cmetindex-univinterval.o cmetindex-interval.o cmetindex-filestring.o cmetindex-iit-read-univ.o cmetindex-iit-read.o cmetindex-compress.o cmetindex-compress-write.o cmetindex-popcount.o cmetindex-genome128_hr.o cmetindex-bitpack64-read.o cmetindex-bitpack64-readtwo.o cmetindex-bitpack64-write.o cmetindex-indexdb.o cmetindex-indexdb-write.o cmetindex-cmet.o cmetindex-md5.o cmetindex-bzip2.o cmetindex-sequence.o cmetindex-genome.o cmetindex-uintlist.o cmetindex-intlist.o cmetindex-saca-k.o cmetindex-uint8list.o cmetindex-bytecoding.o cmetindex-sarray-write.o cmetindex-list.o cmetindex-datadir.o cmetindex-getopt.o cmetindex-getopt1.o cmetindex-cmetindex.o -lz -lbz2 -lm libtool: link: cc -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -o snpindex snpindex-except.o snpindex-assert.o snpindex-mem.o snpindex-intlist.o snpindex-list.o snpindex-littleendian.o snpindex-bigendian.o snpindex-univinterval.o snpindex-interval.o snpindex-uintlist.o snpindex-stopwatch.o snpindex-access.o snpindex-filestring.o snpindex-iit-read-univ.o snpindex-iit-read.o snpindex-genomicpos.o snpindex-compress.o snpindex-compress-write.o snpindex-popcount.o snpindex-genome128_hr.o snpindex-bitpack64-read.o snpindex-bitpack64-readtwo.o snpindex-bitpack64-write.o snpindex-indexdb.o snpindex-indexdb-write.o snpindex-chrom.o snpindex-md5.o snpindex-bzip2.o snpindex-sequence.o snpindex-genome.o snpindex-datadir.o snpindex-getopt.o snpindex-getopt1.o snpindex-snpindex.o -lz -lbz2 -lm -pthread libtool: link: cc -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -pipe -O2 -fno-strict-aliasing -o uniqscan uniqscan-except.o uniqscan-assert.o uniqscan-mem.o uniqscan-intlist.o uniqscan-list.o uniqscan-littleendian.o uniqscan-bigendian.o uniqscan-univinterval.o uniqscan-interval.o uniqscan-uintlist.o uniqscan-stopwatch.o uniqscan-access.o uniqscan-filestring.o uniqscan-iit-read-univ.o uniqscan-iit-read.o uniqscan-md5.o uniqscan-bzip2.o uniqscan-sequence.o uniqscan-reader.o uniqscan-genomicpos.o uniqscan-compress.o uniqscan-genome.o uniqscan-popcount.o uniqscan-genome128_hr.o uniqscan-genome_sites.o uniqscan-bitpack64-read.o uniqscan-bitpack64-readtwo.o uniqscan-indexdb.o uniqscan-indexdb_hr.o uniqscan-oligo.o uniqscan-chrom.o uniqscan-segmentpos.o uniqscan-chrnum.o uniqscan-maxent_hr.o uniqscan-mapq.o uniqscan-shortread.o uniqscan-substring.o uniqscan-junction.o uniqscan-stage3hr.o uniqscan-spanningelt.o uniqscan-cmet.o uniqscan-atoi.o uniqscan-maxent.o uniqscan-pair.o uniqscan-pairpool.o uniqscan-diag.o uniqscan-diagpool.o uniqscan-orderstat.o uniqscan-oligoindex_hr.o uniqscan-cellpool.o uniqscan-stage2.o uniqscan-intron.o uniqscan-boyer-moore.o uniqscan-changepoint.o uniqscan-pbinom.o uniqscan-dynprog.o uniqscan-dynprog_simd.o uniqscan-dynprog_single.o uniqscan-dynprog_genome.o uniqscan-dynprog_cdna.o uniqscan-dynprog_end.o uniqscan-translation.o uniqscan-doublelist.o uniqscan-smooth.o uniqscan-chimera.o uniqscan-stage3.o uniqscan-splicestringpool.o uniqscan-splicetrie_build.o uniqscan-splicetrie.o uniqscan-splice.o uniqscan-indel.o uniqscan-bitpack64-access.o uniqscan-bytecoding.o uniqscan-univdiag.o uniqscan-sarray-read.o uniqscan-stage1hr.o uniqscan-resulthr.o uniqscan-datadir.o uniqscan-getopt.o uniqscan-getopt1.o uniqscan-uniqscan.o -lz -lbz2 -lm -pthread libtool: link: cc -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -o cmetindex cmetindex-except.o cmetindex-assert.o cmetindex-mem.o cmetindex-littleendian.o cmetindex-bigendian.o cmetindex-genomicpos.o cmetindex-stopwatch.o cmetindex-access.o cmetindex-univinterval.o cmetindex-interval.o cmetindex-filestring.o cmetindex-iit-read-univ.o cmetindex-iit-read.o cmetindex-compress.o cmetindex-compress-write.o cmetindex-popcount.o cmetindex-genome128_hr.o cmetindex-bitpack64-read.o cmetindex-bitpack64-readtwo.o cmetindex-bitpack64-write.o cmetindex-indexdb.o cmetindex-indexdb-write.o cmetindex-cmet.o cmetindex-md5.o cmetindex-bzip2.o cmetindex-sequence.o cmetindex-genome.o cmetindex-uintlist.o cmetindex-intlist.o cmetindex-saca-k.o cmetindex-uint8list.o cmetindex-bytecoding.o cmetindex-sarray-write.o cmetindex-list.o cmetindex-datadir.o cmetindex-getopt.o cmetindex-getopt1.o cmetindex-cmetindex.o -lz -lbz2 -lm -pthread mv -f .deps/atoiindex-genome.Tpo .deps/atoiindex-genome.Po /bin/sh ../libtool --tag=CC --mode=link cc -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -o atoiindex atoiindex-except.o atoiindex-assert.o atoiindex-mem.o atoiindex-littleendian.o atoiindex-bigendian.o atoiindex-genomicpos.o atoiindex-stopwatch.o atoiindex-access.o atoiindex-univinterval.o atoiindex-interval.o atoiindex-filestring.o atoiindex-iit-read-univ.o atoiindex-iit-read.o atoiindex-compress.o atoiindex-compress-write.o atoiindex-popcount.o atoiindex-genome128_hr.o atoiindex-bitpack64-read.o atoiindex-bitpack64-readtwo.o atoiindex-bitpack64-write.o atoiindex-indexdb.o atoiindex-indexdb-write.o atoiindex-atoi.o atoiindex-md5.o atoiindex-bzip2.o atoiindex-sequence.o atoiindex-genome.o atoiindex-uintlist.o atoiindex-intlist.o atoiindex-saca-k.o atoiindex-uint8list.o atoiindex-bytecoding.o atoiindex-sarray-write.o atoiindex-list.o atoiindex-datadir.o atoiindex-getopt.o atoiindex-getopt1.o atoiindex-atoiindex.o -lz -lbz2 -lm libtool: link: cc -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -o atoiindex atoiindex-except.o atoiindex-assert.o atoiindex-mem.o atoiindex-littleendian.o atoiindex-bigendian.o atoiindex-genomicpos.o atoiindex-stopwatch.o atoiindex-access.o atoiindex-univinterval.o atoiindex-interval.o atoiindex-filestring.o atoiindex-iit-read-univ.o atoiindex-iit-read.o atoiindex-compress.o atoiindex-compress-write.o atoiindex-popcount.o atoiindex-genome128_hr.o atoiindex-bitpack64-read.o atoiindex-bitpack64-readtwo.o atoiindex-bitpack64-write.o atoiindex-indexdb.o atoiindex-indexdb-write.o atoiindex-atoi.o atoiindex-md5.o atoiindex-bzip2.o atoiindex-sequence.o atoiindex-genome.o atoiindex-uintlist.o atoiindex-intlist.o atoiindex-saca-k.o atoiindex-uint8list.o atoiindex-bytecoding.o atoiindex-sarray-write.o atoiindex-list.o atoiindex-datadir.o atoiindex-getopt.o atoiindex-getopt1.o atoiindex-atoiindex.o -lz -lbz2 -lm -pthread mv -f .deps/sam_sort-sam_sort.Tpo .deps/sam_sort-sam_sort.Po mv -f .deps/uniqscanl-stage1hr.Tpo .deps/uniqscanl-stage1hr.Po /bin/sh ../libtool --tag=CC --mode=link cc -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -o uniqscanl uniqscanl-except.o uniqscanl-assert.o uniqscanl-mem.o uniqscanl-intlist.o uniqscanl-list.o uniqscanl-littleendian.o uniqscanl-bigendian.o uniqscanl-univinterval.o uniqscanl-interval.o uniqscanl-uintlist.o uniqscanl-uint8list.o uniqscanl-stopwatch.o uniqscanl-access.o uniqscanl-filestring.o uniqscanl-iit-read-univ.o uniqscanl-iit-read.o uniqscanl-md5.o uniqscanl-bzip2.o uniqscanl-sequence.o uniqscanl-reader.o uniqscanl-genomicpos.o uniqscanl-compress.o uniqscanl-genome.o uniqscanl-popcount.o uniqscanl-genome128_hr.o uniqscanl-genome_sites.o uniqscanl-bitpack64-read.o uniqscanl-bitpack64-readtwo.o uniqscanl-indexdb.o uniqscanl-indexdb_hr.o uniqscanl-oligo.o uniqscanl-chrom.o uniqscanl-segmentpos.o uniqscanl-chrnum.o uniqscanl-maxent_hr.o uniqscanl-mapq.o uniqscanl-shortread.o uniqscanl-substring.o uniqscanl-junction.o uniqscanl-stage3hr.o uniqscanl-spanningelt.o uniqscanl-cmet.o uniqscanl-atoi.o uniqscanl-maxent.o uniqscanl-pair.o uniqscanl-pairpool.o uniqscanl-diag.o uniqscanl-diagpool.o uniqscanl-orderstat.o uniqscanl-oligoindex_hr.o uniqscanl-cellpool.o uniqscanl-stage2.o uniqscanl-intron.o uniqscanl-boyer-moore.o uniqscanl-changepoint.o uniqscanl-pbinom.o uniqscanl-dynprog.o uniqscanl-dynprog_simd.o uniqscanl-dynprog_single.o uniqscanl-dynprog_genome.o uniqscanl-dynprog_cdna.o uniqscanl-dynprog_end.o uniqscanl-translation.o uniqscanl-doublelist.o uniqscanl-smooth.o uniqscanl-chimera.o uniqscanl-stage3.o uniqscanl-splicestringpool.o uniqscanl-splicetrie_build.o uniqscanl-splicetrie.o uniqscanl-splice.o uniqscanl-indel.o uniqscanl-bitpack64-access.o uniqscanl-stage1hr.o uniqscanl-resulthr.o uniqscanl-datadir.o uniqscanl-getopt.o uniqscanl-getopt1.o uniqscanl-uniqscan.o -lz -lbz2 -lm libtool: link: cc -pthread -DTARGET=\"x86_64-portbld-dragonfly5.9\" -DGMAPDB=\"/usr/local/share\" -DMAX_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -pipe -O2 -fno-strict-aliasing -o uniqscanl uniqscanl-except.o uniqscanl-assert.o uniqscanl-mem.o uniqscanl-intlist.o uniqscanl-list.o uniqscanl-littleendian.o uniqscanl-bigendian.o uniqscanl-univinterval.o uniqscanl-interval.o uniqscanl-uintlist.o uniqscanl-uint8list.o uniqscanl-stopwatch.o uniqscanl-access.o uniqscanl-filestring.o uniqscanl-iit-read-univ.o uniqscanl-iit-read.o uniqscanl-md5.o uniqscanl-bzip2.o uniqscanl-sequence.o uniqscanl-reader.o uniqscanl-genomicpos.o uniqscanl-compress.o uniqscanl-genome.o uniqscanl-popcount.o uniqscanl-genome128_hr.o uniqscanl-genome_sites.o uniqscanl-bitpack64-read.o uniqscanl-bitpack64-readtwo.o uniqscanl-indexdb.o uniqscanl-indexdb_hr.o uniqscanl-oligo.o uniqscanl-chrom.o uniqscanl-segmentpos.o uniqscanl-chrnum.o uniqscanl-maxent_hr.o uniqscanl-mapq.o uniqscanl-shortread.o uniqscanl-substring.o uniqscanl-junction.o uniqscanl-stage3hr.o uniqscanl-spanningelt.o uniqscanl-cmet.o uniqscanl-atoi.o uniqscanl-maxent.o uniqscanl-pair.o uniqscanl-pairpool.o uniqscanl-diag.o uniqscanl-diagpool.o uniqscanl-orderstat.o uniqscanl-oligoindex_hr.o uniqscanl-cellpool.o uniqscanl-stage2.o uniqscanl-intron.o uniqscanl-boyer-moore.o uniqscanl-changepoint.o uniqscanl-pbinom.o uniqscanl-dynprog.o uniqscanl-dynprog_simd.o uniqscanl-dynprog_single.o uniqscanl-dynprog_genome.o uniqscanl-dynprog_cdna.o uniqscanl-dynprog_end.o uniqscanl-translation.o uniqscanl-doublelist.o uniqscanl-smooth.o uniqscanl-chimera.o uniqscanl-stage3.o uniqscanl-splicestringpool.o uniqscanl-splicetrie_build.o uniqscanl-splicetrie.o uniqscanl-splice.o uniqscanl-indel.o uniqscanl-bitpack64-access.o uniqscanl-stage1hr.o uniqscanl-resulthr.o uniqscanl-datadir.o uniqscanl-getopt.o uniqscanl-getopt1.o uniqscanl-uniqscan.o -lz -lbz2 -lm -pthread mv -f .deps/sam_sort-iit-read.Tpo .deps/sam_sort-iit-read.Po /bin/sh ../libtool --tag=CC --mode=link cc -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -o sam_sort sam_sort-except.o sam_sort-assert.o sam_sort-mem.o sam_sort-littleendian.o sam_sort-bigendian.o sam_sort-intlist.o sam_sort-list.o sam_sort-stopwatch.o sam_sort-access.o sam_sort-univinterval.o sam_sort-interval.o sam_sort-uintlist.o sam_sort-filestring.o sam_sort-iit-read-univ.o sam_sort-iit-read.o sam_sort-samheader.o sam_sort-samread.o sam_sort-datadir.o sam_sort-getopt.o sam_sort-getopt1.o sam_sort-sam_sort.o -lm libtool: link: cc -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -O2 -fno-strict-aliasing -o sam_sort sam_sort-except.o sam_sort-assert.o sam_sort-mem.o sam_sort-littleendian.o sam_sort-bigendian.o sam_sort-intlist.o sam_sort-list.o sam_sort-stopwatch.o sam_sort-access.o sam_sort-univinterval.o sam_sort-interval.o sam_sort-uintlist.o sam_sort-filestring.o sam_sort-iit-read-univ.o sam_sort-iit-read.o sam_sort-samheader.o sam_sort-samread.o sam_sort-datadir.o sam_sort-getopt.o sam_sort-getopt1.o sam_sort-sam_sort.o -lm -pthread gmake[3]: Leaving directory '/construction/biology/gmap/gmap-2015-09-21/src' gmake[2]: Leaving directory '/construction/biology/gmap/gmap-2015-09-21/src' Making all in mpi gmake[2]: Entering directory '/construction/biology/gmap/gmap-2015-09-21/mpi' gmake[2]: Nothing to be done for 'all'. gmake[2]: Leaving directory '/construction/biology/gmap/gmap-2015-09-21/mpi' Making all in util gmake[2]: Entering directory '/construction/biology/gmap/gmap-2015-09-21/util' cp gmap_compress.pl gmap_compress cp gmap_uncompress.pl gmap_uncompress cp gmap_process.pl gmap_process cp gmap_build.pl gmap_build cp gmap_reassemble.pl gmap_reassemble cp md_coords.pl md_coords cp fa_coords.pl fa_coords cp psl_splicesites.pl psl_splicesites cp psl_introns.pl psl_introns cp psl_genes.pl psl_genes chmod +x md_coords chmod +x psl_splicesites chmod +x psl_introns chmod +x psl_genes chmod +x gmap_compress cp ensembl_genes.pl ensembl_genes cp gtf_splicesites.pl gtf_splicesites cp gtf_introns.pl gtf_introns cp gtf_genes.pl gtf_genes chmod +x ensembl_genes chmod +x gtf_splicesites chmod +x gtf_introns chmod +x gtf_genes cp gff3_splicesites.pl gff3_splicesites cp gff3_introns.pl gff3_introns cp gff3_genes.pl gff3_genes chmod +x gmap_process cp dbsnp_iit.pl dbsnp_iit chmod +x gff3_splicesites chmod +x gff3_introns chmod +x gff3_genes chmod +x dbsnp_iit cp gvf_iit.pl gvf_iit cp vcf_iit.pl vcf_iit chmod +x gmap_build chmod +x vcf_iit chmod +x gvf_iit chmod +x fa_coords chmod +x gmap_reassemble chmod +x gmap_uncompress gmake[2]: Leaving directory '/construction/biology/gmap/gmap-2015-09-21/util' Making all in tests gmake[2]: Entering directory '/construction/biology/gmap/gmap-2015-09-21/tests' gmake[2]: Nothing to be done for 'all'. gmake[2]: Leaving directory '/construction/biology/gmap/gmap-2015-09-21/tests' gmake[2]: Entering directory '/construction/biology/gmap/gmap-2015-09-21' gmake[2]: Nothing to be done for 'all-am'. gmake[2]: Leaving directory '/construction/biology/gmap/gmap-2015-09-21' gmake[1]: Leaving directory '/construction/biology/gmap/gmap-2015-09-21' SUCCEEDED 00:01:33 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> gmap-2015.09.21 depends on package: perl5>=5.30.r1<5.31 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for gmap-2015.09.21 ===> gmap-2015.09.21 depends on package: perl5>=5.30.r1<5.31 - found ===> Generating temporary packing list gmake[1]: Entering directory '/construction/biology/gmap/gmap-2015-09-21' Making install in src gmake[2]: Entering directory '/construction/biology/gmap/gmap-2015-09-21/src' gmake[3]: Entering directory '/construction/biology/gmap/gmap-2015-09-21/src' test -z "/usr/local/bin" || /bin/mkdir -p "/construction/biology/gmap/stage/usr/local/bin" /bin/sh ../libtool --mode=install install -s -m 555 gmap gmapl get-genome gmapindex iit_store iit_get iit_dump gsnap gsnapl uniqscan uniqscanl snpindex cmetindex atoiindex sam_sort '/construction/biology/gmap/stage/usr/local/bin' libtool: install: install -m 555 -s gmap /construction/biology/gmap/stage/usr/local/bin/gmap libtool: install: install -m 555 -s gmapl /construction/biology/gmap/stage/usr/local/bin/gmapl libtool: install: install -m 555 -s get-genome /construction/biology/gmap/stage/usr/local/bin/get-genome libtool: install: install -m 555 -s gmapindex /construction/biology/gmap/stage/usr/local/bin/gmapindex libtool: install: install -m 555 -s iit_store /construction/biology/gmap/stage/usr/local/bin/iit_store libtool: install: install -m 555 -s iit_get /construction/biology/gmap/stage/usr/local/bin/iit_get libtool: install: install -m 555 -s iit_dump /construction/biology/gmap/stage/usr/local/bin/iit_dump libtool: install: install -m 555 -s gsnap /construction/biology/gmap/stage/usr/local/bin/gsnap libtool: install: install -m 555 -s gsnapl /construction/biology/gmap/stage/usr/local/bin/gsnapl libtool: install: install -m 555 -s uniqscan /construction/biology/gmap/stage/usr/local/bin/uniqscan libtool: install: install -m 555 -s uniqscanl /construction/biology/gmap/stage/usr/local/bin/uniqscanl libtool: install: install -m 555 -s snpindex /construction/biology/gmap/stage/usr/local/bin/snpindex libtool: install: install -m 555 -s cmetindex /construction/biology/gmap/stage/usr/local/bin/cmetindex libtool: install: install -m 555 -s atoiindex /construction/biology/gmap/stage/usr/local/bin/atoiindex libtool: install: install -m 555 -s sam_sort /construction/biology/gmap/stage/usr/local/bin/sam_sort gmake[3]: Nothing to be done for 'install-data-am'. gmake[3]: Leaving directory '/construction/biology/gmap/gmap-2015-09-21/src' gmake[2]: Leaving directory '/construction/biology/gmap/gmap-2015-09-21/src' Making install in mpi gmake[2]: Entering directory '/construction/biology/gmap/gmap-2015-09-21/mpi' gmake[3]: Entering directory '/construction/biology/gmap/gmap-2015-09-21/mpi' test -z "/usr/local/bin" || /bin/mkdir -p "/construction/biology/gmap/stage/usr/local/bin" gmake[3]: Nothing to be done for 'install-data-am'. gmake[3]: Leaving directory '/construction/biology/gmap/gmap-2015-09-21/mpi' gmake[2]: Leaving directory '/construction/biology/gmap/gmap-2015-09-21/mpi' Making install in util gmake[2]: Entering directory '/construction/biology/gmap/gmap-2015-09-21/util' gmake[3]: Entering directory '/construction/biology/gmap/gmap-2015-09-21/util' test -z "/usr/local/bin" || /bin/mkdir -p "/construction/biology/gmap/stage/usr/local/bin" install -m 555 gmap_compress gmap_uncompress gmap_process gmap_build gmap_reassemble md_coords fa_coords psl_splicesites psl_introns psl_genes ensembl_genes gtf_splicesites gtf_introns gtf_genes gff3_splicesites gff3_introns gff3_genes dbsnp_iit gvf_iit vcf_iit '/construction/biology/gmap/stage/usr/local/bin' gmake[3]: Nothing to be done for 'install-data-am'. gmake[3]: Leaving directory '/construction/biology/gmap/gmap-2015-09-21/util' gmake[2]: Leaving directory '/construction/biology/gmap/gmap-2015-09-21/util' Making install in tests gmake[2]: Entering directory '/construction/biology/gmap/gmap-2015-09-21/tests' gmake[3]: Entering directory '/construction/biology/gmap/gmap-2015-09-21/tests' gmake[3]: Nothing to be done for 'install-exec-am'. gmake[3]: Nothing to be done for 'install-data-am'. gmake[3]: Leaving directory '/construction/biology/gmap/gmap-2015-09-21/tests' gmake[2]: Leaving directory '/construction/biology/gmap/gmap-2015-09-21/tests' gmake[2]: Entering directory '/construction/biology/gmap/gmap-2015-09-21' gmake[3]: Entering directory '/construction/biology/gmap/gmap-2015-09-21' gmake[3]: Nothing to be done for 'install-exec-am'. gmake[3]: Nothing to be done for 'install-data-am'. gmake[3]: Leaving directory '/construction/biology/gmap/gmap-2015-09-21' gmake[2]: Leaving directory '/construction/biology/gmap/gmap-2015-09-21' gmake[1]: Leaving directory '/construction/biology/gmap/gmap-2015-09-21' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks Warning: Possible REINPLACE_CMD issues sed failed: file content unchanged from backup: Makefile sed failed: file content unchanged from backup: util/dbsnp_iit.pl sed failed: file content unchanged from backup: util/ensembl_genes.pl sed failed: file content unchanged from backup: util/fa_coords.pl sed failed: file content unchanged from backup: util/gff3_genes.pl sed failed: file content unchanged from backup: util/gff3_introns.pl sed failed: file content unchanged from backup: util/gff3_splicesites.pl sed failed: file content unchanged from backup: util/gmap_build.pl sed failed: file content unchanged from backup: util/gmap_compress.pl sed failed: file content unchanged from backup: util/gmap_process.pl sed failed: file content unchanged from backup: util/gmap_reassemble.pl sed failed: file content unchanged from backup: util/gmap_uncompress.pl sed failed: file content unchanged from backup: util/gtf_genes.pl sed failed: file content unchanged from backup: util/gtf_introns.pl sed failed: file content unchanged from backup: util/gtf_splicesites.pl sed failed: file content unchanged from backup: util/gvf_iit.pl sed failed: file content unchanged from backup: util/md_coords.pl sed failed: file content unchanged from backup: util/psl_genes.pl sed failed: file content unchanged from backup: util/psl_introns.pl sed failed: file content unchanged from backup: util/psl_splicesites.pl sed failed: file content unchanged from backup: util/vcf_iit.pl SUCCEEDED 00:00:04 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for gmap-2015.09.21 file sizes/checksums [35]: 0% file sizes/checksums [35]: 100% packing files [35]: 0% packing files [35]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:52 TOTAL TIME 00:03:03