------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 UNAME_r=6.1 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- ===> The following configuration options are available for gmap-2020.09.12: SIMD=off: Use CPU-specific optimizations ===> Use 'make config' to modify these settings SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/construction/biology/gmap XDG_CONFIG_HOME=/construction/biology/gmap HOME=/construction/biology/gmap TMPDIR="/tmp" PATH=/construction/biology/gmap/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 CONFIG_SITE=/xports/Templates/config.site lt_cv_sys_max_cmd_len=262144 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- --disable-builtin-popcount --disable-simd --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/construction/biology/gmap XDG_CONFIG_HOME=/construction/biology/gmap HOME=/construction/biology/gmap TMPDIR="/tmp" PATH=/construction/biology/gmap/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -fcommon -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -fcommon -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/biology/gmap/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- OSREL=6.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.32.1 PERL_VER=5.32 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.32 PROFILE="@comment " DOCSDIR="share/doc/gmap" EXAMPLESDIR="share/examples/gmap" DATADIR="share/gmap" WWWDIR="www/gmap" ETCDIR="etc/gmap" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/gmap DOCSDIR=/usr/local/share/doc/gmap EXAMPLESDIR=/usr/local/share/examples/gmap WWWDIR=/usr/local/www/gmap ETCDIR=/usr/local/etc/gmap SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_SUFX=.txz DEVELOPER=1 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600102 OSVERSION=9999999 OSREL=6.1 _OSRELEASE=6.1-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=10 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gettext-runtime-0.21.txz Installing /packages/All/gmake-4.3_2.txz Installing /packages/All/perl5-5.32.1_1.txz SUCCEEDED 00:00:11 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> gmap-2020.09.12 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> gmap-2020.09.12 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by gmap-2020.09.12 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> gmap-2020.09.12 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by gmap-2020.09.12 for building => SHA256 Checksum OK for gmap-gsnap-2020-09-12.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> gmap-2020.09.12 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by gmap-2020.09.12 for building ===> Extracting for gmap-2020.09.12 => SHA256 Checksum OK for gmap-gsnap-2020-09-12.tar.gz. Extracted Memory Use: 30.19M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for gmap-2020.09.12 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> gmap-2020.09.12 depends on package: gmake>=4.3 - found ===> gmap-2020.09.12 depends on package: perl5>=5.32.r0<5.33 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> gmap-2020.09.12 depends on package: gmake>=4.3 - found ===> gmap-2020.09.12 depends on package: perl5>=5.32.r0<5.33 - found ===> Configuring for gmap-2020.09.12 configure: WARNING: unrecognized options: --disable-builtin-popcount configure: loading site script /xports/Templates/config.site checking package version... 2020-09-12 really loading site script /xports/Templates/config.site: file was found checking CFLAGS... -pipe -fcommon -O2 -fno-strict-aliasing checking build system type... x86_64-portbld-dragonfly6.1 checking host system type... x86_64-portbld-dragonfly6.1 checking target system type... x86_64-portbld-dragonfly6.1 checking for non-Intel CPU... no checking for gcc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether gmake sets $(MAKE)... yes checking for style of include used by gmake... GNU checking whether gmake supports nested variables... yes checking dependency style of cc... gcc3 checking whether to enable maintainer-specific portions of Makefiles... no checking bindir... /usr/local/bin checking for a working version of perl... /usr/local/bin/perl checking for gcc... (cached) cc checking whether we are using the GNU C compiler... (cached) yes checking whether cc accepts -g... (cached) yes checking for cc option to accept ISO C89... (cached) none needed checking whether cc understands -c and -o together... yes checking for C compiler vendor... gnu checking for rint in -lm... yes checking whether to use MPI_File for input... not specified so enabled by default checking for pthreads feature... not specified so enabled by default checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... no checking whether pthreads work with -Kthread... no checking whether pthreads work with -kthread... no checking for the pthreads library -llthread... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for cc_r... cc checking how to run the C preprocessor... cpp checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for ANSI C header files... (cached) yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for fcntl.h... (cached) yes checking for limits.h... (cached) yes checking for stddef.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/types.h... (cached) yes checking for inline... inline checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for size_t... (cached) yes checking for off_t... (cached) yes checking for caddr_t... yes checking size of unsigned long... 8 checking size of unsigned long long... 8 checking size of off_t... 8 checking for _LARGEFILE_SOURCE value needed for large files... no checking whether alloca is enabled... not specified so disabled by default checking whether mmap is enabled... not specified so enabled by default checking for working mmap with MAP_FIXED... yes checking for working mmap with MAP_VARIABLE... no checking for MAP_FILE in mmap... yes checking for MAP_VARIABLE in mmap... no checking for MAP_SHARED in mmap... yes checking for MAP_PRIVATE in mmap... yes checking for MAP_FAILED in mmap... yes checking for MADV_DONTNEED in madvise... yes checking for MADV_WILLNEED in madvise... yes checking for MADV_RANDOM in madvise... yes checking for MADV_SEQUENTIAL in madvise... yes checking for SHM_NORESERVE in shmget... no checking for ceil... yes checking for floor... yes checking for index... (cached) yes checking for log... yes checking for madvise... yes checking for memcpy... (cached) yes checking for memmove... (cached) yes checking for memset... (cached) yes checking for munmap... (cached) yes checking for pow... yes checking for rint... yes checking for stat64... no checking for strtoul... (cached) yes checking for sysconf... (cached) yes checking for sysctl... (cached) yes checking for sigaction... (cached) yes checking for shmget... (cached) yes checking for shmctl... yes checking for shmat... yes checking for shmdt... yes checking for semget... yes checking for semctl... yes checking for semop... yes checking for struct stat64... no checking for pagesize via sysconf... yes checking for pagesize via sysctl... no checking whether fopen accepts "b" mode... yes checking whether fopen accepts "t" mode... yes checking whether C compiler accepts -pipe -fcommon -O2 -fno-strict-aliasing -mpopcnt... yes checking for __builtin_popcount... yes checking for __builtin_clz... yes checking for __builtin_ctz... yes checking for bsr instruction in assembly... yes checking compiler is defective and requires an immediate in sse2 shift commands... no checking for _mm_extract_epi64... yes checking for _mm_popcnt_u64... yes checking for whether simd is enabled... disabled checking for sse2 support... yes checking for ssse3 support... yes checking for sse4.1 support... yes checking for sse4.2 support... yes checking for popcnt support... yes checking for bmi1 support... no checking for avx2 support... yes checking for bmi2 support... no checking for avx512 support... no checking for avx512bw and avx512vl support... no checking whether C compiler accepts -msse2... yes checking for emmintrin.h header file... yes checking whether C compiler accepts -msse2 -mssse3... yes checking for tmmintrin.h header file... yes checking whether C compiler accepts -msse2 -mssse3 -msse4.1... yes checking for smmintrin.h header file... yes checking whether C compiler accepts -msse2 -mssse3 -msse4.1 -msse4.2... yes checking for nmmintrin.h header file... yes checking for mm_popcnt run support... yes checking whether C compiler accepts -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2... yes checking for immintrin.h header file... yes checking gmapdb... /usr/local/share checking MAX_STACK_READLENGTH... 300 checking for zlib support... enabled checking for zlib.h... (cached) yes checking for gzopen in -lz... yes checking for gzeof in -lz... yes checking for gzgetc in -lz... yes checking for gzgets in -lz... yes checking for gzclose in -lz... yes checking if zlib package is complete... working checking for gzbuffer in -lz... yes checking for bzlib support... enabled checking bzlib.h usability... yes checking bzlib.h presence... yes checking for bzlib.h... yes checking for BZ2_bzReadOpen in -lbz2... yes checking for BZ2_bzRead in -lbz2... yes checking for BZ2_bzReadClose in -lbz2... yes checking if bzlib package is complete... working checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating util/Makefile config.status: creating util/gmap_process.pl config.status: creating util/gmap_build.pl config.status: creating util/gmap_cat.pl config.status: creating util/md_coords.pl config.status: creating util/fa_coords.pl config.status: creating util/psl_splicesites.pl config.status: creating util/psl_introns.pl config.status: creating util/psl_genes.pl config.status: creating util/ensembl_genes.pl config.status: creating util/gtf_splicesites.pl config.status: creating util/gtf_transcript_splicesites.pl config.status: creating util/gtf_introns.pl config.status: creating util/gtf_genes.pl config.status: creating util/gff3_splicesites.pl config.status: creating util/gff3_introns.pl config.status: creating util/gff3_genes.pl config.status: creating util/dbsnp_iit.pl config.status: creating util/gvf_iit.pl config.status: creating util/vcf_iit.pl config.status: creating tests/Makefile config.status: creating tests/align.test config.status: creating tests/coords1.test config.status: creating tests/setup1.test config.status: creating tests/iit.test config.status: creating src/config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-builtin-popcount checking standard compiler and flags to be used... cc -pipe -fcommon -O2 -fno-strict-aliasing checking standard linker flags to be used... checking pthread compiler flags to be used... -pthread checking popcnt flags to be used... -mpopcnt checking compile level... none SUCCEEDED 00:00:35 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for gmap-2020.09.12 gmake[1]: Entering directory '/construction/biology/gmap/gmap-2020-09-12' Making all in src gmake[2]: Entering directory '/construction/biology/gmap/gmap-2020-09-12/src' gmake all-am gmake[3]: Entering directory '/construction/biology/gmap/gmap-2020-09-12/src' cc -DHAVE_CONFIG_H -I. -DMAIN=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT cpuid-cpuid.o -MD -MP -MF .deps/cpuid-cpuid.Tpo -c -o cpuid-cpuid.o `test -f 'cpuid.c' || echo './'`cpuid.c cc -DHAVE_CONFIG_H -I. -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap-cpuid.o -MD -MP -MF .deps/gmap-cpuid.Tpo -c -o gmap-cpuid.o `test -f 'cpuid.c' || echo './'`cpuid.c cc -DHAVE_CONFIG_H -I. -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap-gmap_select.o -MD -MP -MF .deps/gmap-gmap_select.Tpo -c -o gmap-gmap_select.o `test -f 'gmap_select.c' || echo './'`gmap_select.c cc -DHAVE_CONFIG_H -I. -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl-cpuid.o -MD -MP -MF .deps/gmapl-cpuid.Tpo -c -o gmapl-cpuid.o `test -f 'cpuid.c' || echo './'`cpuid.c cc -DHAVE_CONFIG_H -I. -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl-gmapl_select.o -MD -MP -MF .deps/gmapl-gmapl_select.Tpo -c -o gmapl-gmapl_select.o `test -f 'gmapl_select.c' || echo './'`gmapl_select.c mv -f .deps/gmap-cpuid.Tpo .deps/gmap-cpuid.Po mv -f .deps/cpuid-cpuid.Tpo .deps/cpuid-cpuid.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT get_genome-except.o -MD -MP -MF .deps/get_genome-except.Tpo -c -o get_genome-except.o `test -f 'except.c' || echo './'`except.c cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT get_genome-assert.o -MD -MP -MF .deps/get_genome-assert.Tpo -c -o get_genome-assert.o `test -f 'assert.c' || echo './'`assert.c cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT get_genome-mem.o -MD -MP -MF .deps/get_genome-mem.Tpo -c -o get_genome-mem.o `test -f 'mem.c' || echo './'`mem.c cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT get_genome-intlist.o -MD -MP -MF .deps/get_genome-intlist.Tpo -c -o get_genome-intlist.o `test -f 'intlist.c' || echo './'`intlist.c mv -f .deps/get_genome-assert.Tpo .deps/get_genome-assert.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT get_genome-list.o -MD -MP -MF .deps/get_genome-list.Tpo -c -o get_genome-list.o `test -f 'list.c' || echo './'`list.c cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT get_genome-littleendian.o -MD -MP -MF .deps/get_genome-littleendian.Tpo -c -o get_genome-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT get_genome-bigendian.o -MD -MP -MF .deps/get_genome-bigendian.Tpo -c -o get_genome-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c mv -f .deps/get_genome-except.Tpo .deps/get_genome-except.Po mv -f .deps/gmapl-cpuid.Tpo .deps/gmapl-cpuid.Po mv -f .deps/gmap-gmap_select.Tpo .deps/gmap-gmap_select.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT get_genome-univinterval.o -MD -MP -MF .deps/get_genome-univinterval.Tpo -c -o get_genome-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c mv -f .deps/get_genome-littleendian.Tpo .deps/get_genome-littleendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT get_genome-interval.o -MD -MP -MF .deps/get_genome-interval.Tpo -c -o get_genome-interval.o `test -f 'interval.c' || echo './'`interval.c mv -f .deps/gmapl-gmapl_select.Tpo .deps/gmapl-gmapl_select.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT get_genome-uintlist.o -MD -MP -MF .deps/get_genome-uintlist.Tpo -c -o get_genome-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT get_genome-stopwatch.o -MD -MP -MF .deps/get_genome-stopwatch.Tpo -c -o get_genome-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT get_genome-semaphore.o -MD -MP -MF .deps/get_genome-semaphore.Tpo -c -o get_genome-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT get_genome-access.o -MD -MP -MF .deps/get_genome-access.Tpo -c -o get_genome-access.o `test -f 'access.c' || echo './'`access.c mv -f .deps/get_genome-mem.Tpo .deps/get_genome-mem.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT get_genome-filestring.o -MD -MP -MF .deps/get_genome-filestring.Tpo -c -o get_genome-filestring.o `test -f 'filestring.c' || echo './'`filestring.c mv -f .deps/get_genome-stopwatch.Tpo .deps/get_genome-stopwatch.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT get_genome-iit-read-univ.o -MD -MP -MF .deps/get_genome-iit-read-univ.Tpo -c -o get_genome-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c mv -f .deps/get_genome-univinterval.Tpo .deps/get_genome-univinterval.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT get_genome-iit-read.o -MD -MP -MF .deps/get_genome-iit-read.Tpo -c -o get_genome-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c mv -f .deps/get_genome-semaphore.Tpo .deps/get_genome-semaphore.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT get_genome-md5.o -MD -MP -MF .deps/get_genome-md5.Tpo -c -o get_genome-md5.o `test -f 'md5.c' || echo './'`md5.c mv -f .deps/get_genome-bigendian.Tpo .deps/get_genome-bigendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT get_genome-bzip2.o -MD -MP -MF .deps/get_genome-bzip2.Tpo -c -o get_genome-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c mv -f .deps/get_genome-interval.Tpo .deps/get_genome-interval.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT get_genome-fopen.o -MD -MP -MF .deps/get_genome-fopen.Tpo -c -o get_genome-fopen.o `test -f 'fopen.c' || echo './'`fopen.c mv -f .deps/get_genome-fopen.Tpo .deps/get_genome-fopen.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT get_genome-sequence.o -MD -MP -MF .deps/get_genome-sequence.Tpo -c -o get_genome-sequence.o `test -f 'sequence.c' || echo './'`sequence.c mv -f .deps/get_genome-bzip2.Tpo .deps/get_genome-bzip2.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT get_genome-genome.o -MD -MP -MF .deps/get_genome-genome.Tpo -c -o get_genome-genome.o `test -f 'genome.c' || echo './'`genome.c mv -f .deps/get_genome-intlist.Tpo .deps/get_genome-intlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT get_genome-genomicpos.o -MD -MP -MF .deps/get_genome-genomicpos.Tpo -c -o get_genome-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c mv -f .deps/get_genome-md5.Tpo .deps/get_genome-md5.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT get_genome-chrom.o -MD -MP -MF .deps/get_genome-chrom.Tpo -c -o get_genome-chrom.o `test -f 'chrom.c' || echo './'`chrom.c mv -f .deps/get_genome-list.Tpo .deps/get_genome-list.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT get_genome-chrnum.o -MD -MP -MF .deps/get_genome-chrnum.Tpo -c -o get_genome-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c mv -f .deps/get_genome-uintlist.Tpo .deps/get_genome-uintlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT get_genome-datadir.o -MD -MP -MF .deps/get_genome-datadir.Tpo -c -o get_genome-datadir.o `test -f 'datadir.c' || echo './'`datadir.c mv -f .deps/get_genome-access.Tpo .deps/get_genome-access.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT get_genome-parserange.o -MD -MP -MF .deps/get_genome-parserange.Tpo -c -o get_genome-parserange.o `test -f 'parserange.c' || echo './'`parserange.c mv -f .deps/get_genome-chrnum.Tpo .deps/get_genome-chrnum.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT get_genome-getline.o -MD -MP -MF .deps/get_genome-getline.Tpo -c -o get_genome-getline.o `test -f 'getline.c' || echo './'`getline.c mv -f .deps/get_genome-genomicpos.Tpo .deps/get_genome-genomicpos.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT get_genome-getopt.o -MD -MP -MF .deps/get_genome-getopt.Tpo -c -o get_genome-getopt.o `test -f 'getopt.c' || echo './'`getopt.c mv -f .deps/get_genome-filestring.Tpo .deps/get_genome-filestring.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT get_genome-getopt1.o -MD -MP -MF .deps/get_genome-getopt1.Tpo -c -o get_genome-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c mv -f .deps/get_genome-getopt1.Tpo .deps/get_genome-getopt1.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT get_genome-get-genome.o -MD -MP -MF .deps/get_genome-get-genome.Tpo -c -o get_genome-get-genome.o `test -f 'get-genome.c' || echo './'`get-genome.c mv -f .deps/get_genome-getline.Tpo .deps/get_genome-getline.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapindex-except.o -MD -MP -MF .deps/gmapindex-except.Tpo -c -o gmapindex-except.o `test -f 'except.c' || echo './'`except.c mv -f .deps/get_genome-datadir.Tpo .deps/get_genome-datadir.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapindex-assert.o -MD -MP -MF .deps/gmapindex-assert.Tpo -c -o gmapindex-assert.o `test -f 'assert.c' || echo './'`assert.c mv -f .deps/get_genome-chrom.Tpo .deps/get_genome-chrom.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapindex-mem.o -MD -MP -MF .deps/gmapindex-mem.Tpo -c -o gmapindex-mem.o `test -f 'mem.c' || echo './'`mem.c mv -f .deps/gmapindex-except.Tpo .deps/gmapindex-except.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapindex-intlist.o -MD -MP -MF .deps/gmapindex-intlist.Tpo -c -o gmapindex-intlist.o `test -f 'intlist.c' 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-pipe -fcommon -O2 -fno-strict-aliasing -MT gmapindex-univinterval.o -MD -MP -MF .deps/gmapindex-univinterval.Tpo -c -o gmapindex-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c mv -f .deps/gmapindex-list.Tpo .deps/gmapindex-list.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapindex-interval.o -MD -MP -MF .deps/gmapindex-interval.Tpo -c -o gmapindex-interval.o `test -f 'interval.c' || echo './'`interval.c mv -f .deps/gmapindex-intlist.Tpo .deps/gmapindex-intlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapindex-uintlist.o -MD -MP -MF .deps/gmapindex-uintlist.Tpo -c -o gmapindex-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c mv -f .deps/get_genome-getopt.Tpo .deps/get_genome-getopt.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapindex-stopwatch.o -MD -MP -MF .deps/gmapindex-stopwatch.Tpo -c -o gmapindex-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c mv -f .deps/gmapindex-univinterval.Tpo .deps/gmapindex-univinterval.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapindex-semaphore.o -MD -MP -MF .deps/gmapindex-semaphore.Tpo -c -o gmapindex-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c mv -f .deps/gmapindex-stopwatch.Tpo .deps/gmapindex-stopwatch.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapindex-access.o -MD -MP -MF .deps/gmapindex-access.Tpo -c -o gmapindex-access.o `test -f 'access.c' || echo './'`access.c mv -f .deps/get_genome-sequence.Tpo .deps/get_genome-sequence.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapindex-filestring.o -MD -MP -MF .deps/gmapindex-filestring.Tpo -c -o gmapindex-filestring.o `test -f 'filestring.c' || echo './'`filestring.c mv -f .deps/gmapindex-bigendian.Tpo .deps/gmapindex-bigendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapindex-iit-read-univ.o -MD -MP -MF .deps/gmapindex-iit-read-univ.Tpo -c -o gmapindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c mv -f .deps/gmapindex-semaphore.Tpo .deps/gmapindex-semaphore.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapindex-iit-write-univ.o -MD -MP -MF .deps/gmapindex-iit-write-univ.Tpo -c -o gmapindex-iit-write-univ.o `test -f 'iit-write-univ.c' || echo './'`iit-write-univ.c mv -f .deps/gmapindex-uintlist.Tpo .deps/gmapindex-uintlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapindex-iit-read.o -MD -MP -MF .deps/gmapindex-iit-read.Tpo -c -o gmapindex-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c mv -f .deps/gmapindex-interval.Tpo .deps/gmapindex-interval.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapindex-md5.o -MD -MP -MF .deps/gmapindex-md5.Tpo -c -o gmapindex-md5.o `test -f 'md5.c' || echo './'`md5.c mv -f .deps/get_genome-iit-read-univ.Tpo .deps/get_genome-iit-read-univ.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapindex-bzip2.o -MD -MP -MF .deps/gmapindex-bzip2.Tpo -c -o gmapindex-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c mv -f .deps/gmapindex-md5.Tpo .deps/gmapindex-md5.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapindex-fopen.o -MD -MP -MF .deps/gmapindex-fopen.Tpo -c -o gmapindex-fopen.o `test -f 'fopen.c' || echo './'`fopen.c mv -f .deps/gmapindex-bzip2.Tpo .deps/gmapindex-bzip2.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapindex-sequence.o -MD -MP -MF .deps/gmapindex-sequence.Tpo -c -o gmapindex-sequence.o `test -f 'sequence.c' || echo './'`sequence.c mv -f .deps/gmapindex-fopen.Tpo .deps/gmapindex-fopen.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapindex-genome.o -MD -MP -MF .deps/gmapindex-genome.Tpo -c -o gmapindex-genome.o `test -f 'genome.c' || echo './'`genome.c mv -f .deps/get_genome-get-genome.Tpo .deps/get_genome-get-genome.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapindex-genomicpos.o -MD -MP -MF .deps/gmapindex-genomicpos.Tpo -c -o gmapindex-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c mv -f .deps/gmapindex-iit-write-univ.Tpo .deps/gmapindex-iit-write-univ.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapindex-compress-write.o -MD -MP -MF .deps/gmapindex-compress-write.Tpo -c -o gmapindex-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c mv -f .deps/gmapindex-filestring.Tpo .deps/gmapindex-filestring.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapindex-genome-write.o -MD -MP -MF .deps/gmapindex-genome-write.Tpo -c -o gmapindex-genome-write.o `test -f 'genome-write.c' || echo './'`genome-write.c mv -f .deps/gmapindex-genomicpos.Tpo .deps/gmapindex-genomicpos.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapindex-compress.o -MD -MP -MF .deps/gmapindex-compress.Tpo -c -o gmapindex-compress.o `test -f 'compress.c' || echo './'`compress.c mv -f .deps/gmapindex-access.Tpo .deps/gmapindex-access.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapindex-popcount.o -MD -MP -MF .deps/gmapindex-popcount.Tpo -c -o gmapindex-popcount.o `test -f 'popcount.c' || echo './'`popcount.c mv -f .deps/gmapindex-compress.Tpo .deps/gmapindex-compress.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapindex-genome128_hr.o -MD -MP -MF .deps/gmapindex-genome128_hr.Tpo -c -o gmapindex-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c mv -f .deps/gmapindex-genome-write.Tpo .deps/gmapindex-genome-write.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapindex-genome128_consec.o -MD -MP -MF .deps/gmapindex-genome128_consec.Tpo -c -o gmapindex-genome128_consec.o `test -f 'genome128_consec.c' || echo './'`genome128_consec.c mv -f .deps/gmapindex-iit-read-univ.Tpo .deps/gmapindex-iit-read-univ.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapindex-bitpack64-read.o -MD -MP -MF .deps/gmapindex-bitpack64-read.Tpo -c -o gmapindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c mv -f .deps/gmapindex-sequence.Tpo .deps/gmapindex-sequence.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapindex-bitpack64-readtwo.o -MD -MP -MF .deps/gmapindex-bitpack64-readtwo.Tpo -c -o gmapindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c mv -f .deps/gmapindex-compress-write.Tpo .deps/gmapindex-compress-write.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapindex-bitpack64-access.o -MD -MP -MF .deps/gmapindex-bitpack64-access.Tpo -c -o gmapindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c mv -f .deps/gmapindex-popcount.Tpo .deps/gmapindex-popcount.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapindex-bitpack64-incr.o -MD -MP -MF .deps/gmapindex-bitpack64-incr.Tpo -c -o gmapindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo './'`bitpack64-incr.c mv -f .deps/gmapindex-genome128_consec.Tpo .deps/gmapindex-genome128_consec.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapindex-bitpack64-write.o -MD -MP 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-DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapindex-tableuint8.o -MD -MP -MF .deps/gmapindex-tableuint8.Tpo -c -o gmapindex-tableuint8.o `test -f 'tableuint8.c' || echo './'`tableuint8.c mv -f .deps/gmapindex-regiondb-write.Tpo .deps/gmapindex-regiondb-write.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapindex-tableint.o -MD -MP -MF .deps/gmapindex-tableint.Tpo -c -o gmapindex-tableint.o `test -f 'tableint.c' || echo './'`tableint.c mv -f .deps/gmapindex-indexdb-write.Tpo .deps/gmapindex-indexdb-write.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapindex-chrom.o -MD -MP -MF .deps/gmapindex-chrom.Tpo -c -o gmapindex-chrom.o `test -f 'chrom.c' || echo './'`chrom.c mv -f .deps/gmapindex-bitpack64-write.Tpo .deps/gmapindex-bitpack64-write.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapindex-segmentpos.o 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iit_store-littleendian.o -MD -MP -MF .deps/iit_store-littleendian.Tpo -c -o iit_store-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c mv -f .deps/indexdb_cat-getopt.Tpo .deps/indexdb_cat-getopt.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_store-bigendian.o -MD -MP -MF .deps/iit_store-bigendian.Tpo -c -o iit_store-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c mv -f .deps/iit_store-except.Tpo .deps/iit_store-except.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_store-univinterval.o -MD -MP -MF .deps/iit_store-univinterval.Tpo -c -o iit_store-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c mv -f .deps/iit_store-mem.Tpo .deps/iit_store-mem.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_store-interval.o -MD -MP -MF .deps/iit_store-interval.Tpo -c -o iit_store-interval.o `test -f 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-I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_store-access.o -MD -MP -MF .deps/iit_store-access.Tpo -c -o iit_store-access.o `test -f 'access.c' || echo './'`access.c mv -f .deps/indexdb_cat-bitpack64-write.Tpo .deps/indexdb_cat-bitpack64-write.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_store-doublelist.o -MD -MP -MF .deps/iit_store-doublelist.Tpo -c -o iit_store-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c mv -f .deps/iit_store-semaphore.Tpo .deps/iit_store-semaphore.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_store-iit-write-univ.o -MD -MP -MF .deps/iit_store-iit-write-univ.Tpo -c -o iit_store-iit-write-univ.o `test -f 'iit-write-univ.c' || echo './'`iit-write-univ.c mv -f .deps/iit_store-univinterval.Tpo .deps/iit_store-univinterval.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_store-iit-write.o -MD -MP -MF .deps/iit_store-iit-write.Tpo -c -o iit_store-iit-write.o `test -f 'iit-write.c' || echo './'`iit-write.c mv -f .deps/iit_store-list.Tpo .deps/iit_store-list.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_store-tableint.o -MD -MP -MF .deps/iit_store-tableint.Tpo -c -o iit_store-tableint.o `test -f 'tableint.c' || echo './'`tableint.c mv -f .deps/indexdb_cat-indexdb-cat.Tpo .deps/indexdb_cat-indexdb-cat.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_store-table.o -MD -MP -MF .deps/iit_store-table.Tpo -c -o iit_store-table.o `test -f 'table.c' || echo './'`table.c mv -f .deps/iit_store-interval.Tpo .deps/iit_store-interval.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_store-chrom.o -MD -MP -MF .deps/iit_store-chrom.Tpo -c -o iit_store-chrom.o `test -f 'chrom.c' || echo './'`chrom.c mv -f 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-MF .deps/iit_store-getopt1.Tpo -c -o iit_store-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c mv -f .deps/iit_store-getopt1.Tpo .deps/iit_store-getopt1.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_store-iit_store.o -MD -MP -MF .deps/iit_store-iit_store.Tpo -c -o iit_store-iit_store.o `test -f 'iit_store.c' || echo './'`iit_store.c mv -f .deps/iit_store-chrom.Tpo .deps/iit_store-chrom.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_get-except.o -MD -MP -MF .deps/iit_get-except.Tpo -c -o iit_get-except.o `test -f 'except.c' || echo './'`except.c mv -f .deps/iit_store-table.Tpo .deps/iit_store-table.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_get-assert.o -MD -MP -MF .deps/iit_get-assert.Tpo -c -o iit_get-assert.o `test -f 'assert.c' || echo './'`assert.c mv -f .deps/iit_store-getline.Tpo .deps/iit_store-getline.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_get-mem.o -MD -MP -MF .deps/iit_get-mem.Tpo -c -o iit_get-mem.o `test -f 'mem.c' || echo './'`mem.c mv -f .deps/iit_get-assert.Tpo .deps/iit_get-assert.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_get-intlist.o -MD -MP -MF .deps/iit_get-intlist.Tpo -c -o iit_get-intlist.o `test -f 'intlist.c' || echo './'`intlist.c mv -f .deps/indexdb_cat-bitpack64-incr.Tpo .deps/indexdb_cat-bitpack64-incr.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_get-list.o -MD -MP -MF .deps/iit_get-list.Tpo -c -o iit_get-list.o `test -f 'list.c' || echo './'`list.c mv -f .deps/iit_get-except.Tpo .deps/iit_get-except.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_get-littleendian.o -MD -MP -MF .deps/iit_get-littleendian.Tpo -c -o iit_get-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c mv -f .deps/iit_store-getopt.Tpo .deps/iit_store-getopt.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_get-bigendian.o -MD -MP -MF .deps/iit_get-bigendian.Tpo -c -o iit_get-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c mv -f .deps/iit_store-iit-write-univ.Tpo .deps/iit_store-iit-write-univ.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_get-univinterval.o -MD -MP -MF .deps/iit_get-univinterval.Tpo -c -o iit_get-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c mv -f .deps/iit_get-littleendian.Tpo .deps/iit_get-littleendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_get-interval.o -MD -MP -MF .deps/iit_get-interval.Tpo -c -o iit_get-interval.o `test -f 'interval.c' || echo './'`interval.c mv -f .deps/iit_store-uintlist.Tpo .deps/iit_store-uintlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_get-uintlist.o -MD -MP -MF .deps/iit_get-uintlist.Tpo -c -o iit_get-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c mv -f .deps/iit_get-mem.Tpo .deps/iit_get-mem.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_get-stopwatch.o -MD -MP -MF .deps/iit_get-stopwatch.Tpo -c -o iit_get-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c mv -f .deps/iit_get-univinterval.Tpo .deps/iit_get-univinterval.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_get-semaphore.o -MD -MP -MF .deps/iit_get-semaphore.Tpo -c -o iit_get-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c mv -f .deps/iit_get-interval.Tpo .deps/iit_get-interval.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_get-access.o -MD -MP -MF .deps/iit_get-access.Tpo -c -o iit_get-access.o `test -f 'access.c' || echo './'`access.c mv -f .deps/iit_get-list.Tpo .deps/iit_get-list.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_get-filestring.o -MD -MP -MF .deps/iit_get-filestring.Tpo -c -o iit_get-filestring.o `test -f 'filestring.c' || echo './'`filestring.c mv -f .deps/iit_store-iit-write.Tpo .deps/iit_store-iit-write.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_get-iit-read-univ.o -MD -MP -MF .deps/iit_get-iit-read-univ.Tpo -c -o iit_get-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c mv -f .deps/iit_get-stopwatch.Tpo .deps/iit_get-stopwatch.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_get-iit-read.o -MD -MP -MF .deps/iit_get-iit-read.Tpo -c -o iit_get-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c mv -f .deps/iit_get-intlist.Tpo .deps/iit_get-intlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_get-parserange.o -MD -MP -MF .deps/iit_get-parserange.Tpo -c -o iit_get-parserange.o `test -f 'parserange.c' || echo './'`parserange.c mv -f .deps/iit_get-semaphore.Tpo .deps/iit_get-semaphore.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_get-bzip2.o -MD -MP -MF .deps/iit_get-bzip2.Tpo -c -o iit_get-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c mv -f .deps/iit_get-uintlist.Tpo .deps/iit_get-uintlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_get-getline.o -MD -MP -MF .deps/iit_get-getline.Tpo -c -o iit_get-getline.o `test -f 'getline.c' || echo './'`getline.c mv -f .deps/iit_get-bzip2.Tpo .deps/iit_get-bzip2.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_get-getopt.o -MD -MP -MF .deps/iit_get-getopt.Tpo -c -o iit_get-getopt.o `test -f 'getopt.c' || echo './'`getopt.c mv -f 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-DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_dump-intlist.o -MD -MP -MF .deps/iit_dump-intlist.Tpo -c -o iit_dump-intlist.o `test -f 'intlist.c' || echo './'`intlist.c mv -f .deps/iit_get-filestring.Tpo .deps/iit_get-filestring.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_dump-list.o -MD -MP -MF .deps/iit_dump-list.Tpo -c -o iit_dump-list.o `test -f 'list.c' || echo './'`list.c mv -f .deps/iit_dump-littleendian.Tpo .deps/iit_dump-littleendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_dump-univinterval.o -MD -MP -MF .deps/iit_dump-univinterval.Tpo -c -o iit_dump-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c mv -f .deps/iit_dump-mem.Tpo .deps/iit_dump-mem.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_dump-interval.o -MD -MP -MF .deps/iit_dump-interval.Tpo -c -o iit_dump-interval.o `test -f 'interval.c' || echo './'`interval.c mv -f .deps/iit_dump-univinterval.Tpo .deps/iit_dump-univinterval.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_dump-uintlist.o -MD -MP -MF .deps/iit_dump-uintlist.Tpo -c -o iit_dump-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c mv -f .deps/iit_dump-bigendian.Tpo .deps/iit_dump-bigendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_dump-stopwatch.o -MD -MP -MF .deps/iit_dump-stopwatch.Tpo -c -o iit_dump-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c mv -f .deps/iit_get-getopt.Tpo .deps/iit_get-getopt.Po cc -DHAVE_CONFIG_H -I. -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT iit_dump-semaphore.o -MD -MP -MF .deps/iit_dump-semaphore.Tpo -c -o iit_dump-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c mv -f .deps/iit_dump-list.Tpo .deps/iit_dump-list.Po cc -DHAVE_CONFIG_H 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atoiindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c mv -f .deps/atoiindex-compress-write.Tpo .deps/atoiindex-compress-write.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT atoiindex-bitpack64-readtwo.o -MD -MP -MF .deps/atoiindex-bitpack64-readtwo.Tpo -c -o atoiindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c mv -f .deps/atoiindex-popcount.Tpo .deps/atoiindex-popcount.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT atoiindex-bitpack64-access.o -MD -MP -MF .deps/atoiindex-bitpack64-access.Tpo -c -o atoiindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c mv -f .deps/cmetindex-bitpack64-incr.Tpo .deps/cmetindex-bitpack64-incr.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 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atoiindex-sequence.o -MD -MP -MF .deps/atoiindex-sequence.Tpo -c -o atoiindex-sequence.o `test -f 'sequence.c' || echo './'`sequence.c mv -f .deps/atoiindex-md5.Tpo .deps/atoiindex-md5.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT atoiindex-genome.o -MD -MP -MF .deps/atoiindex-genome.Tpo -c -o atoiindex-genome.o `test -f 'genome.c' || echo './'`genome.c mv -f .deps/atoiindex-indexdb.Tpo .deps/atoiindex-indexdb.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT atoiindex-uintlist.o -MD -MP -MF .deps/atoiindex-uintlist.Tpo -c -o atoiindex-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c mv -f .deps/atoiindex-indexdb-write.Tpo .deps/atoiindex-indexdb-write.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT atoiindex-intlist.o -MD -MP -MF .deps/atoiindex-intlist.Tpo 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trindex-bigendian.o -MD -MP -MF .deps/trindex-bigendian.Tpo -c -o trindex-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c mv -f .deps/atoiindex-datadir.Tpo .deps/atoiindex-datadir.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT trindex-genomicpos.o -MD -MP -MF .deps/trindex-genomicpos.Tpo -c -o trindex-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c mv -f .deps/trindex-assert.Tpo .deps/trindex-assert.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT trindex-stopwatch.o -MD -MP -MF .deps/trindex-stopwatch.Tpo -c -o trindex-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c mv -f .deps/trindex-littleendian.Tpo .deps/trindex-littleendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -MT trindex-semaphore.o -MD -MP -MF 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'iit-read-univ.c' || echo './'`iit-read-univ.c mv -f .deps/gmap_nosimd-interval.Tpo .deps/gmap_nosimd-interval.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-iit-read.o -MD -MP -MF .deps/gmap_nosimd-iit-read.Tpo -c -o gmap_nosimd-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c mv -f .deps/atoiindex-genome.Tpo .deps/atoiindex-genome.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-md5.o -MD -MP -MF .deps/gmap_nosimd-md5.Tpo -c -o gmap_nosimd-md5.o `test -f 'md5.c' || echo './'`md5.c mv -f .deps/gmap_nosimd-bigendian.Tpo .deps/gmap_nosimd-bigendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-bzip2.o -MD -MP -MF .deps/gmap_nosimd-bzip2.Tpo -c -o gmap_nosimd-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c mv -f .deps/gmap_nosimd-bzip2.Tpo .deps/gmap_nosimd-bzip2.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-fopen.o -MD -MP -MF .deps/gmap_nosimd-fopen.Tpo -c -o gmap_nosimd-fopen.o `test -f 'fopen.c' || echo './'`fopen.c mv -f .deps/sam_sort-sam_sort.Tpo .deps/sam_sort-sam_sort.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-sequence.o -MD -MP -MF .deps/gmap_nosimd-sequence.Tpo -c -o gmap_nosimd-sequence.o `test -f 'sequence.c' || echo './'`sequence.c mv -f .deps/gmap_nosimd-fopen.Tpo .deps/gmap_nosimd-fopen.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-reader.o -MD -MP -MF .deps/gmap_nosimd-reader.Tpo -c -o gmap_nosimd-reader.o `test -f 'reader.c' || echo './'`reader.c mv -f .deps/gmap_nosimd-md5.Tpo .deps/gmap_nosimd-md5.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-genomicpos.o -MD -MP -MF .deps/gmap_nosimd-genomicpos.Tpo -c -o gmap_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c mv -f .deps/gmap_nosimd-filestring.Tpo .deps/gmap_nosimd-filestring.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-compress.o -MD -MP -MF .deps/gmap_nosimd-compress.Tpo -c -o gmap_nosimd-compress.o `test -f 'compress.c' || echo './'`compress.c mv -f .deps/gmap_nosimd-genomicpos.Tpo .deps/gmap_nosimd-genomicpos.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-compress-write.o -MD -MP -MF .deps/gmap_nosimd-compress-write.Tpo -c -o gmap_nosimd-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c mv -f .deps/gmap_nosimd-reader.Tpo .deps/gmap_nosimd-reader.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-gbuffer.o -MD -MP -MF .deps/gmap_nosimd-gbuffer.Tpo -c -o gmap_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c mv -f .deps/sam_sort-iit-read-univ.Tpo .deps/sam_sort-iit-read-univ.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-genome.o -MD -MP -MF .deps/gmap_nosimd-genome.Tpo -c -o gmap_nosimd-genome.o `test -f 'genome.c' || echo './'`genome.c mv -f .deps/gmap_nosimd-access.Tpo .deps/gmap_nosimd-access.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-popcount.o -MD -MP -MF .deps/gmap_nosimd-popcount.Tpo -c -o gmap_nosimd-popcount.o `test -f 'popcount.c' || echo './'`popcount.c mv -f .deps/gmap_nosimd-compress.Tpo .deps/gmap_nosimd-compress.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-genome_sites.o -MD -MP -MF .deps/gmap_nosimd-genome_sites.Tpo -c -o gmap_nosimd-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c mv -f .deps/gmap_nosimd-gbuffer.Tpo .deps/gmap_nosimd-gbuffer.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-genome-write.o -MD -MP -MF .deps/gmap_nosimd-genome-write.Tpo -c -o gmap_nosimd-genome-write.o `test -f 'genome-write.c' || echo './'`genome-write.c mv -f .deps/gmap_nosimd-popcount.Tpo .deps/gmap_nosimd-popcount.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-bitpack64-read.o -MD -MP -MF .deps/gmap_nosimd-bitpack64-read.Tpo -c -o gmap_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c mv -f .deps/gmap_nosimd-compress-write.Tpo .deps/gmap_nosimd-compress-write.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-bitpack64-readtwo.o -MD -MP -MF .deps/gmap_nosimd-bitpack64-readtwo.Tpo -c -o gmap_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c mv -f .deps/gmap_nosimd-genome-write.Tpo .deps/gmap_nosimd-genome-write.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-indexdb.o -MD -MP -MF .deps/gmap_nosimd-indexdb.Tpo -c -o gmap_nosimd-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c mv -f .deps/gmap_nosimd-sequence.Tpo .deps/gmap_nosimd-sequence.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-oligo.o -MD -MP -MF .deps/gmap_nosimd-oligo.Tpo -c -o gmap_nosimd-oligo.o `test -f 'oligo.c' || echo './'`oligo.c mv -f .deps/gmap_nosimd-oligo.Tpo .deps/gmap_nosimd-oligo.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-block.o -MD -MP -MF .deps/gmap_nosimd-block.Tpo -c -o gmap_nosimd-block.o `test -f 'block.c' || echo './'`block.c mv -f .deps/gmap_nosimd-bitpack64-readtwo.Tpo .deps/gmap_nosimd-bitpack64-readtwo.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-chrom.o -MD -MP -MF .deps/gmap_nosimd-chrom.Tpo -c -o gmap_nosimd-chrom.o `test -f 'chrom.c' || echo './'`chrom.c mv -f .deps/gmap_nosimd-block.Tpo .deps/gmap_nosimd-block.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-segmentpos.o -MD -MP -MF .deps/gmap_nosimd-segmentpos.Tpo -c -o gmap_nosimd-segmentpos.o `test -f 'segmentpos.c' || echo './'`segmentpos.c mv -f .deps/gmap_nosimd-bitpack64-read.Tpo .deps/gmap_nosimd-bitpack64-read.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-chrnum.o -MD -MP -MF .deps/gmap_nosimd-chrnum.Tpo -c -o gmap_nosimd-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c mv -f .deps/gmap_nosimd-segmentpos.Tpo .deps/gmap_nosimd-segmentpos.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-uinttable_rh.o -MD -MP -MF .deps/gmap_nosimd-uinttable_rh.Tpo -c -o gmap_nosimd-uinttable_rh.o `test -f 'uinttable_rh.c' || echo './'`uinttable_rh.c mv -f .deps/gmap_nosimd-chrnum.Tpo .deps/gmap_nosimd-chrnum.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-gregion.o -MD -MP -MF .deps/gmap_nosimd-gregion.Tpo -c -o gmap_nosimd-gregion.o `test -f 'gregion.c' || echo './'`gregion.c mv -f .deps/gmap_nosimd-iit-read-univ.Tpo .deps/gmap_nosimd-iit-read-univ.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-match.o -MD -MP -MF .deps/gmap_nosimd-match.Tpo -c -o gmap_nosimd-match.o `test -f 'match.c' || echo './'`match.c mv -f .deps/gmap_nosimd-indexdb.Tpo .deps/gmap_nosimd-indexdb.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-matchpool.o -MD -MP -MF .deps/gmap_nosimd-matchpool.Tpo -c -o gmap_nosimd-matchpool.o `test -f 'matchpool.c' || echo './'`matchpool.c mv -f .deps/gmap_nosimd-matchpool.Tpo .deps/gmap_nosimd-matchpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-diagnostic.o -MD -MP -MF .deps/gmap_nosimd-diagnostic.Tpo -c -o gmap_nosimd-diagnostic.o `test -f 'diagnostic.c' || echo './'`diagnostic.c mv -f .deps/gmap_nosimd-diagnostic.Tpo .deps/gmap_nosimd-diagnostic.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-stage1.o -MD -MP -MF .deps/gmap_nosimd-stage1.Tpo -c -o gmap_nosimd-stage1.o `test -f 'stage1.c' || echo './'`stage1.c mv -f .deps/gmap_nosimd-uinttable_rh.Tpo .deps/gmap_nosimd-uinttable_rh.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-diag.o -MD -MP -MF .deps/gmap_nosimd-diag.Tpo -c -o gmap_nosimd-diag.o `test -f 'diag.c' || echo './'`diag.c mv -f .deps/gmap_nosimd-chrom.Tpo .deps/gmap_nosimd-chrom.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-diagpool.o -MD -MP -MF .deps/gmap_nosimd-diagpool.Tpo -c -o gmap_nosimd-diagpool.o `test -f 'diagpool.c' || echo './'`diagpool.c mv -f .deps/gmap_nosimd-match.Tpo .deps/gmap_nosimd-match.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-cmet.o -MD -MP -MF .deps/gmap_nosimd-cmet.Tpo -c -o gmap_nosimd-cmet.o `test -f 'cmet.c' || echo './'`cmet.c mv -f .deps/gmap_nosimd-diagpool.Tpo .deps/gmap_nosimd-diagpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-atoi.o -MD -MP -MF .deps/gmap_nosimd-atoi.Tpo -c -o gmap_nosimd-atoi.o `test -f 'atoi.c' || echo './'`atoi.c mv -f .deps/gmap_nosimd-genome.Tpo .deps/gmap_nosimd-genome.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-orderstat.o -MD -MP -MF .deps/gmap_nosimd-orderstat.Tpo -c -o gmap_nosimd-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c mv -f .deps/sam_sort-iit-read.Tpo .deps/sam_sort-iit-read.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-oligoindex_hr.o -MD -MP -MF .deps/gmap_nosimd-oligoindex_hr.Tpo -c -o gmap_nosimd-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo './'`oligoindex_hr.c mv -f .deps/gmap_nosimd-diag.Tpo .deps/gmap_nosimd-diag.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-transcript.o -MD -MP -MF .deps/gmap_nosimd-transcript.Tpo -c -o gmap_nosimd-transcript.o `test -f 'transcript.c' || echo './'`transcript.c mv -f .deps/gmap_nosimd-orderstat.Tpo .deps/gmap_nosimd-orderstat.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-intron.o -MD -MP -MF .deps/gmap_nosimd-intron.Tpo -c -o gmap_nosimd-intron.o `test -f 'intron.c' || echo './'`intron.c mv -f .deps/gmap_nosimd-intron.Tpo .deps/gmap_nosimd-intron.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-maxent.o -MD -MP -MF .deps/gmap_nosimd-maxent.Tpo -c -o gmap_nosimd-maxent.o `test -f 'maxent.c' || echo './'`maxent.c mv -f .deps/trindex-iit-read.Tpo .deps/trindex-iit-read.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-maxent_hr.o -MD -MP -MF .deps/gmap_nosimd-maxent_hr.Tpo -c -o gmap_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c mv -f .deps/gmap_nosimd-gregion.Tpo .deps/gmap_nosimd-gregion.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-pair.o -MD -MP -MF .deps/gmap_nosimd-pair.Tpo -c -o gmap_nosimd-pair.o `test -f 'pair.c' || echo './'`pair.c mv -f .deps/gmap_nosimd-transcript.Tpo .deps/gmap_nosimd-transcript.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-pairpool.o -MD -MP -MF .deps/gmap_nosimd-pairpool.Tpo -c -o gmap_nosimd-pairpool.o `test -f 'pairpool.c' || echo './'`pairpool.c mv -f .deps/gmap_nosimd-genome_sites.Tpo .deps/gmap_nosimd-genome_sites.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-cellpool.o -MD -MP -MF .deps/gmap_nosimd-cellpool.Tpo -c -o gmap_nosimd-cellpool.o `test -f 'cellpool.c' || echo './'`cellpool.c mv -f .deps/gmap_nosimd-cmet.Tpo .deps/gmap_nosimd-cmet.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-stage2.o -MD -MP -MF .deps/gmap_nosimd-stage2.Tpo -c -o gmap_nosimd-stage2.o `test -f 'stage2.c' || echo './'`stage2.c mv -f .deps/gmap_nosimd-cellpool.Tpo .deps/gmap_nosimd-cellpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-doublelist.o -MD -MP -MF .deps/gmap_nosimd-doublelist.Tpo -c -o gmap_nosimd-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c mv -f .deps/gmap_nosimd-doublelist.Tpo .deps/gmap_nosimd-doublelist.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-smooth.o -MD -MP -MF .deps/gmap_nosimd-smooth.Tpo -c -o gmap_nosimd-smooth.o `test -f 'smooth.c' || echo './'`smooth.c mv -f .deps/gmap_nosimd-atoi.Tpo .deps/gmap_nosimd-atoi.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-splicestringpool.o -MD -MP -MF .deps/gmap_nosimd-splicestringpool.Tpo -c -o gmap_nosimd-splicestringpool.o `test -f 'splicestringpool.c' || echo './'`splicestringpool.c mv -f .deps/gmap_nosimd-iit-read.Tpo .deps/gmap_nosimd-iit-read.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-splicetrie_build.o -MD -MP -MF .deps/gmap_nosimd-splicetrie_build.Tpo -c -o gmap_nosimd-splicetrie_build.o `test -f 'splicetrie_build.c' || echo './'`splicetrie_build.c mv -f .deps/gmap_nosimd-stage1.Tpo .deps/gmap_nosimd-stage1.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-splicetrie.o -MD -MP -MF .deps/gmap_nosimd-splicetrie.Tpo -c -o gmap_nosimd-splicetrie.o `test -f 'splicetrie.c' || echo './'`splicetrie.c mv -f .deps/gmap_nosimd-splicestringpool.Tpo .deps/gmap_nosimd-splicestringpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-boyer-moore.o -MD -MP -MF .deps/gmap_nosimd-boyer-moore.Tpo -c -o gmap_nosimd-boyer-moore.o `test -f 'boyer-moore.c' || echo './'`boyer-moore.c mv -f .deps/gmap_nosimd-pairpool.Tpo .deps/gmap_nosimd-pairpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-dynprog.o -MD -MP -MF .deps/gmap_nosimd-dynprog.Tpo -c -o gmap_nosimd-dynprog.o `test -f 'dynprog.c' || echo './'`dynprog.c mv -f .deps/gmap_nosimd-boyer-moore.Tpo .deps/gmap_nosimd-boyer-moore.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-dynprog_simd.o -MD -MP -MF .deps/gmap_nosimd-dynprog_simd.Tpo -c -o gmap_nosimd-dynprog_simd.o `test -f 'dynprog_simd.c' || echo './'`dynprog_simd.c mv -f .deps/gmap_nosimd-dynprog_simd.Tpo .deps/gmap_nosimd-dynprog_simd.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-dynprog_single.o -MD -MP -MF .deps/gmap_nosimd-dynprog_single.Tpo -c -o gmap_nosimd-dynprog_single.o `test -f 'dynprog_single.c' || echo './'`dynprog_single.c mv -f .deps/gmap_nosimd-smooth.Tpo .deps/gmap_nosimd-smooth.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-dynprog_genome.o -MD -MP -MF .deps/gmap_nosimd-dynprog_genome.Tpo -c -o gmap_nosimd-dynprog_genome.o `test -f 'dynprog_genome.c' || echo './'`dynprog_genome.c mv -f .deps/gmap_nosimd-splicetrie.Tpo .deps/gmap_nosimd-splicetrie.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-dynprog_cdna.o -MD -MP -MF .deps/gmap_nosimd-dynprog_cdna.Tpo -c -o gmap_nosimd-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo './'`dynprog_cdna.c mv -f .deps/gmap_nosimd-dynprog_cdna.Tpo .deps/gmap_nosimd-dynprog_cdna.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-dynprog_end.o -MD -MP -MF .deps/gmap_nosimd-dynprog_end.Tpo -c -o gmap_nosimd-dynprog_end.o `test -f 'dynprog_end.c' || echo './'`dynprog_end.c mv -f .deps/gmap_nosimd-maxent.Tpo .deps/gmap_nosimd-maxent.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-translation.o -MD -MP -MF .deps/gmap_nosimd-translation.Tpo -c -o gmap_nosimd-translation.o `test -f 'translation.c' || echo './'`translation.c mv -f .deps/gmap_nosimd-dynprog_single.Tpo .deps/gmap_nosimd-dynprog_single.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-pbinom.o -MD -MP -MF .deps/gmap_nosimd-pbinom.Tpo -c -o gmap_nosimd-pbinom.o `test -f 'pbinom.c' || echo './'`pbinom.c mv -f .deps/gmap_nosimd-dynprog.Tpo .deps/gmap_nosimd-dynprog.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-changepoint.o -MD -MP -MF .deps/gmap_nosimd-changepoint.Tpo -c -o gmap_nosimd-changepoint.o `test -f 'changepoint.c' || echo './'`changepoint.c mv -f .deps/gmap_nosimd-changepoint.Tpo .deps/gmap_nosimd-changepoint.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-stage3.o -MD -MP -MF .deps/gmap_nosimd-stage3.Tpo -c -o gmap_nosimd-stage3.o `test -f 'stage3.c' || echo './'`stage3.c mv -f .deps/gmap_nosimd-dynprog_genome.Tpo .deps/gmap_nosimd-dynprog_genome.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-request.o -MD -MP -MF .deps/gmap_nosimd-request.Tpo -c -o gmap_nosimd-request.o `test -f 'request.c' || echo './'`request.c mv -f .deps/gmap_nosimd-pbinom.Tpo .deps/gmap_nosimd-pbinom.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-result.o -MD -MP -MF .deps/gmap_nosimd-result.Tpo -c -o gmap_nosimd-result.o `test -f 'result.c' || echo './'`result.c mv -f .deps/gmap_nosimd-request.Tpo .deps/gmap_nosimd-request.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-output.o -MD -MP -MF .deps/gmap_nosimd-output.Tpo -c -o gmap_nosimd-output.o `test -f 'output.c' || echo './'`output.c mv -f .deps/gmap_nosimd-stage2.Tpo .deps/gmap_nosimd-stage2.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-inbuffer.o -MD -MP -MF .deps/gmap_nosimd-inbuffer.Tpo -c -o gmap_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c mv -f .deps/gmap_nosimd-result.Tpo .deps/gmap_nosimd-result.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-samheader.o -MD -MP -MF .deps/gmap_nosimd-samheader.Tpo -c -o gmap_nosimd-samheader.o `test -f 'samheader.c' || echo './'`samheader.c mv -f .deps/gmap_nosimd-dynprog_end.Tpo .deps/gmap_nosimd-dynprog_end.Po mv -f .deps/gmap_nosimd-splicetrie_build.Tpo .deps/gmap_nosimd-splicetrie_build.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-outbuffer.o -MD -MP -MF .deps/gmap_nosimd-outbuffer.Tpo -c -o gmap_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-chimera.o -MD -MP -MF .deps/gmap_nosimd-chimera.Tpo -c -o gmap_nosimd-chimera.o `test -f 'chimera.c' || echo './'`chimera.c mv -f .deps/gmap_nosimd-inbuffer.Tpo .deps/gmap_nosimd-inbuffer.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-datadir.o -MD -MP -MF .deps/gmap_nosimd-datadir.Tpo -c -o gmap_nosimd-datadir.o `test -f 'datadir.c' || echo './'`datadir.c mv -f .deps/gmap_nosimd-output.Tpo .deps/gmap_nosimd-output.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-parserange.o -MD -MP -MF .deps/gmap_nosimd-parserange.Tpo -c -o gmap_nosimd-parserange.o `test -f 'parserange.c' || echo './'`parserange.c mv -f .deps/gmap_nosimd-samheader.Tpo .deps/gmap_nosimd-samheader.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-getline.o -MD -MP -MF .deps/gmap_nosimd-getline.Tpo -c -o gmap_nosimd-getline.o `test -f 'getline.c' || echo './'`getline.c mv -f .deps/gmap_nosimd-getline.Tpo .deps/gmap_nosimd-getline.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-getopt.o -MD -MP -MF .deps/gmap_nosimd-getopt.Tpo -c -o gmap_nosimd-getopt.o `test -f 'getopt.c' || echo './'`getopt.c mv -f .deps/gmap_nosimd-translation.Tpo .deps/gmap_nosimd-translation.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-getopt1.o -MD -MP -MF .deps/gmap_nosimd-getopt1.Tpo -c -o gmap_nosimd-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c mv -f .deps/gmap_nosimd-datadir.Tpo .deps/gmap_nosimd-datadir.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmap_nosimd-gmap.o -MD -MP -MF .deps/gmap_nosimd-gmap.Tpo -c -o gmap_nosimd-gmap.o `test -f 'gmap.c' || echo './'`gmap.c mv -f .deps/gmap_nosimd-getopt1.Tpo .deps/gmap_nosimd-getopt1.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-except.o -MD -MP -MF .deps/gmapl_nosimd-except.Tpo -c -o gmapl_nosimd-except.o `test -f 'except.c' || echo './'`except.c mv -f .deps/gmap_nosimd-parserange.Tpo .deps/gmap_nosimd-parserange.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-assert.o -MD -MP -MF .deps/gmapl_nosimd-assert.Tpo -c -o gmapl_nosimd-assert.o `test -f 'assert.c' || echo './'`assert.c mv -f .deps/gmapl_nosimd-assert.Tpo .deps/gmapl_nosimd-assert.Po mv -f .deps/gmap_nosimd-outbuffer.Tpo .deps/gmap_nosimd-outbuffer.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-mem.o -MD -MP -MF .deps/gmapl_nosimd-mem.Tpo -c -o gmapl_nosimd-mem.o `test -f 'mem.c' || echo './'`mem.c cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-intlist.o -MD -MP -MF .deps/gmapl_nosimd-intlist.Tpo -c -o gmapl_nosimd-intlist.o `test -f 'intlist.c' || echo './'`intlist.c mv -f .deps/gmapl_nosimd-except.Tpo .deps/gmapl_nosimd-except.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-uintlist.o -MD -MP -MF .deps/gmapl_nosimd-uintlist.Tpo -c -o gmapl_nosimd-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c mv -f .deps/gmap_nosimd-chimera.Tpo .deps/gmap_nosimd-chimera.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-uint8list.o -MD -MP -MF .deps/gmapl_nosimd-uint8list.Tpo -c -o gmapl_nosimd-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c mv -f .deps/gmapl_nosimd-mem.Tpo .deps/gmapl_nosimd-mem.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-list.o -MD -MP -MF .deps/gmapl_nosimd-list.Tpo -c -o gmapl_nosimd-list.o `test -f 'list.c' || echo './'`list.c mv -f .deps/gmap_nosimd-getopt.Tpo .deps/gmap_nosimd-getopt.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-littleendian.o -MD -MP -MF .deps/gmapl_nosimd-littleendian.Tpo -c -o gmapl_nosimd-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c mv -f .deps/gmapl_nosimd-uintlist.Tpo .deps/gmapl_nosimd-uintlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-bigendian.o -MD -MP -MF .deps/gmapl_nosimd-bigendian.Tpo -c -o gmapl_nosimd-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c mv -f .deps/gmapl_nosimd-littleendian.Tpo .deps/gmapl_nosimd-littleendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-univinterval.o -MD -MP -MF .deps/gmapl_nosimd-univinterval.Tpo -c -o gmapl_nosimd-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c mv -f .deps/gmapl_nosimd-uint8list.Tpo .deps/gmapl_nosimd-uint8list.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-interval.o -MD -MP -MF .deps/gmapl_nosimd-interval.Tpo -c -o gmapl_nosimd-interval.o `test -f 'interval.c' || echo './'`interval.c mv -f .deps/gmapl_nosimd-list.Tpo .deps/gmapl_nosimd-list.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-stopwatch.o -MD -MP -MF .deps/gmapl_nosimd-stopwatch.Tpo -c -o gmapl_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c mv -f .deps/gmapl_nosimd-stopwatch.Tpo .deps/gmapl_nosimd-stopwatch.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-semaphore.o -MD -MP -MF .deps/gmapl_nosimd-semaphore.Tpo -c -o gmapl_nosimd-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c mv -f .deps/gmapl_nosimd-bigendian.Tpo .deps/gmapl_nosimd-bigendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-access.o -MD -MP -MF .deps/gmapl_nosimd-access.Tpo -c -o gmapl_nosimd-access.o `test -f 'access.c' || echo './'`access.c mv -f .deps/gmapl_nosimd-intlist.Tpo .deps/gmapl_nosimd-intlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-filestring.o -MD -MP -MF .deps/gmapl_nosimd-filestring.Tpo -c -o gmapl_nosimd-filestring.o `test -f 'filestring.c' || echo './'`filestring.c mv -f .deps/gmapl_nosimd-semaphore.Tpo .deps/gmapl_nosimd-semaphore.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-iit-read-univ.o -MD -MP -MF .deps/gmapl_nosimd-iit-read-univ.Tpo -c -o gmapl_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c mv -f .deps/gmapl_nosimd-univinterval.Tpo .deps/gmapl_nosimd-univinterval.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-iit-read.o -MD -MP -MF .deps/gmapl_nosimd-iit-read.Tpo -c -o gmapl_nosimd-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c mv -f .deps/gmapl_nosimd-interval.Tpo .deps/gmapl_nosimd-interval.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-md5.o -MD -MP -MF .deps/gmapl_nosimd-md5.Tpo -c -o gmapl_nosimd-md5.o `test -f 'md5.c' || echo './'`md5.c mv -f .deps/gmap_nosimd-maxent_hr.Tpo .deps/gmap_nosimd-maxent_hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-bzip2.o -MD -MP -MF .deps/gmapl_nosimd-bzip2.Tpo -c -o gmapl_nosimd-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c mv -f .deps/gmapl_nosimd-bzip2.Tpo .deps/gmapl_nosimd-bzip2.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-fopen.o -MD -MP -MF .deps/gmapl_nosimd-fopen.Tpo -c -o gmapl_nosimd-fopen.o `test -f 'fopen.c' || echo './'`fopen.c mv -f .deps/gmapl_nosimd-fopen.Tpo .deps/gmapl_nosimd-fopen.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-sequence.o -MD -MP -MF .deps/gmapl_nosimd-sequence.Tpo -c -o gmapl_nosimd-sequence.o `test -f 'sequence.c' || echo './'`sequence.c mv -f .deps/gmapl_nosimd-access.Tpo .deps/gmapl_nosimd-access.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-reader.o -MD -MP -MF .deps/gmapl_nosimd-reader.Tpo -c -o gmapl_nosimd-reader.o `test -f 'reader.c' || echo './'`reader.c mv -f .deps/gmapl_nosimd-md5.Tpo .deps/gmapl_nosimd-md5.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-genomicpos.o -MD -MP -MF .deps/gmapl_nosimd-genomicpos.Tpo -c -o gmapl_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c mv -f .deps/gmapl_nosimd-filestring.Tpo .deps/gmapl_nosimd-filestring.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-compress.o -MD -MP -MF .deps/gmapl_nosimd-compress.Tpo -c -o gmapl_nosimd-compress.o `test -f 'compress.c' || echo './'`compress.c mv -f .deps/gmapl_nosimd-reader.Tpo .deps/gmapl_nosimd-reader.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-compress-write.o -MD -MP -MF .deps/gmapl_nosimd-compress-write.Tpo -c -o gmapl_nosimd-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c mv -f .deps/gmapl_nosimd-genomicpos.Tpo .deps/gmapl_nosimd-genomicpos.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-gbuffer.o -MD -MP -MF .deps/gmapl_nosimd-gbuffer.Tpo -c -o gmapl_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c mv -f .deps/gmapl_nosimd-gbuffer.Tpo .deps/gmapl_nosimd-gbuffer.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-genome.o -MD -MP -MF .deps/gmapl_nosimd-genome.Tpo -c -o gmapl_nosimd-genome.o `test -f 'genome.c' || echo './'`genome.c mv -f .deps/gmapl_nosimd-compress.Tpo .deps/gmapl_nosimd-compress.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-popcount.o -MD -MP -MF .deps/gmapl_nosimd-popcount.Tpo -c -o gmapl_nosimd-popcount.o `test -f 'popcount.c' || echo './'`popcount.c mv -f .deps/gmap_nosimd-pair.Tpo .deps/gmap_nosimd-pair.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-genome_sites.o -MD -MP -MF .deps/gmapl_nosimd-genome_sites.Tpo -c -o gmapl_nosimd-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c mv -f .deps/gmapl_nosimd-sequence.Tpo .deps/gmapl_nosimd-sequence.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-genome-write.o -MD -MP -MF .deps/gmapl_nosimd-genome-write.Tpo -c -o gmapl_nosimd-genome-write.o `test -f 'genome-write.c' || echo './'`genome-write.c mv -f .deps/gmap_nosimd-oligoindex_hr.Tpo .deps/gmap_nosimd-oligoindex_hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-bitpack64-read.o -MD -MP -MF .deps/gmapl_nosimd-bitpack64-read.Tpo -c -o gmapl_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c mv -f .deps/gmapl_nosimd-iit-read-univ.Tpo .deps/gmapl_nosimd-iit-read-univ.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-bitpack64-readtwo.o -MD -MP -MF .deps/gmapl_nosimd-bitpack64-readtwo.Tpo -c -o gmapl_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c mv -f .deps/gmapl_nosimd-compress-write.Tpo .deps/gmapl_nosimd-compress-write.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-indexdb.o -MD -MP -MF .deps/gmapl_nosimd-indexdb.Tpo -c -o gmapl_nosimd-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c mv -f .deps/gmapl_nosimd-popcount.Tpo .deps/gmapl_nosimd-popcount.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-oligo.o -MD -MP -MF .deps/gmapl_nosimd-oligo.Tpo -c -o gmapl_nosimd-oligo.o `test -f 'oligo.c' || echo './'`oligo.c mv -f .deps/gmapl_nosimd-oligo.Tpo .deps/gmapl_nosimd-oligo.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-block.o -MD -MP -MF .deps/gmapl_nosimd-block.Tpo -c -o gmapl_nosimd-block.o `test -f 'block.c' || echo './'`block.c mv -f .deps/gmapl_nosimd-genome-write.Tpo .deps/gmapl_nosimd-genome-write.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-chrom.o -MD -MP -MF .deps/gmapl_nosimd-chrom.Tpo -c -o gmapl_nosimd-chrom.o `test -f 'chrom.c' || echo './'`chrom.c mv -f .deps/gmapl_nosimd-block.Tpo .deps/gmapl_nosimd-block.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-segmentpos.o -MD -MP -MF .deps/gmapl_nosimd-segmentpos.Tpo -c -o gmapl_nosimd-segmentpos.o `test -f 'segmentpos.c' || echo './'`segmentpos.c mv -f .deps/gmapl_nosimd-chrom.Tpo .deps/gmapl_nosimd-chrom.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-chrnum.o -MD -MP -MF .deps/gmapl_nosimd-chrnum.Tpo -c -o gmapl_nosimd-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c mv -f .deps/gmapl_nosimd-bitpack64-readtwo.Tpo .deps/gmapl_nosimd-bitpack64-readtwo.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-uinttable_rh.o -MD -MP -MF .deps/gmapl_nosimd-uinttable_rh.Tpo -c -o gmapl_nosimd-uinttable_rh.o `test -f 'uinttable_rh.c' || echo './'`uinttable_rh.c mv -f .deps/gmapl_nosimd-indexdb.Tpo .deps/gmapl_nosimd-indexdb.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-gregion.o -MD -MP -MF .deps/gmapl_nosimd-gregion.Tpo -c -o gmapl_nosimd-gregion.o `test -f 'gregion.c' || echo './'`gregion.c mv -f .deps/gmapl_nosimd-chrnum.Tpo .deps/gmapl_nosimd-chrnum.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-match.o -MD -MP -MF .deps/gmapl_nosimd-match.Tpo -c -o gmapl_nosimd-match.o `test -f 'match.c' || echo './'`match.c mv -f .deps/gmap_nosimd-gmap.Tpo .deps/gmap_nosimd-gmap.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-matchpool.o -MD -MP -MF .deps/gmapl_nosimd-matchpool.Tpo -c -o gmapl_nosimd-matchpool.o `test -f 'matchpool.c' || echo './'`matchpool.c mv -f .deps/gmapl_nosimd-uinttable_rh.Tpo .deps/gmapl_nosimd-uinttable_rh.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-diagnostic.o -MD -MP -MF .deps/gmapl_nosimd-diagnostic.Tpo -c -o gmapl_nosimd-diagnostic.o `test -f 'diagnostic.c' || echo './'`diagnostic.c mv -f .deps/gmapl_nosimd-diagnostic.Tpo .deps/gmapl_nosimd-diagnostic.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-stage1.o -MD -MP -MF .deps/gmapl_nosimd-stage1.Tpo -c -o gmapl_nosimd-stage1.o `test -f 'stage1.c' || echo './'`stage1.c mv -f .deps/gmapl_nosimd-segmentpos.Tpo .deps/gmapl_nosimd-segmentpos.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-diag.o -MD -MP -MF .deps/gmapl_nosimd-diag.Tpo -c -o gmapl_nosimd-diag.o `test -f 'diag.c' || echo './'`diag.c mv -f .deps/gmapl_nosimd-matchpool.Tpo .deps/gmapl_nosimd-matchpool.Po mv -f .deps/gmapl_nosimd-match.Tpo .deps/gmapl_nosimd-match.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-diagpool.o -MD -MP -MF .deps/gmapl_nosimd-diagpool.Tpo -c -o gmapl_nosimd-diagpool.o `test -f 'diagpool.c' || echo './'`diagpool.c cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-cmet.o -MD -MP -MF .deps/gmapl_nosimd-cmet.Tpo -c -o gmapl_nosimd-cmet.o `test -f 'cmet.c' || echo './'`cmet.c mv -f .deps/gmapl_nosimd-bitpack64-read.Tpo .deps/gmapl_nosimd-bitpack64-read.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-atoi.o -MD -MP -MF .deps/gmapl_nosimd-atoi.Tpo -c -o gmapl_nosimd-atoi.o `test -f 'atoi.c' || echo './'`atoi.c mv -f .deps/gmapl_nosimd-diagpool.Tpo .deps/gmapl_nosimd-diagpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-orderstat.o -MD -MP -MF .deps/gmapl_nosimd-orderstat.Tpo -c -o gmapl_nosimd-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c mv -f .deps/gmapl_nosimd-orderstat.Tpo .deps/gmapl_nosimd-orderstat.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-oligoindex_hr.o -MD -MP -MF .deps/gmapl_nosimd-oligoindex_hr.Tpo -c -o gmapl_nosimd-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo './'`oligoindex_hr.c mv -f .deps/gmapl_nosimd-gregion.Tpo .deps/gmapl_nosimd-gregion.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-transcript.o -MD -MP -MF .deps/gmapl_nosimd-transcript.Tpo -c -o gmapl_nosimd-transcript.o `test -f 'transcript.c' || echo './'`transcript.c mv -f .deps/gmapl_nosimd-cmet.Tpo .deps/gmapl_nosimd-cmet.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-intron.o -MD -MP -MF .deps/gmapl_nosimd-intron.Tpo -c -o gmapl_nosimd-intron.o `test -f 'intron.c' || echo './'`intron.c mv -f .deps/gmapl_nosimd-diag.Tpo .deps/gmapl_nosimd-diag.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-maxent.o -MD -MP -MF .deps/gmapl_nosimd-maxent.Tpo -c -o gmapl_nosimd-maxent.o `test -f 'maxent.c' || echo './'`maxent.c mv -f .deps/gmapl_nosimd-intron.Tpo .deps/gmapl_nosimd-intron.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-maxent_hr.o -MD -MP -MF .deps/gmapl_nosimd-maxent_hr.Tpo -c -o gmapl_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c mv -f .deps/gmapl_nosimd-genome_sites.Tpo .deps/gmapl_nosimd-genome_sites.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-pair.o -MD -MP -MF .deps/gmapl_nosimd-pair.Tpo -c -o gmapl_nosimd-pair.o `test -f 'pair.c' || echo './'`pair.c mv -f .deps/gmapl_nosimd-atoi.Tpo .deps/gmapl_nosimd-atoi.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-pairpool.o -MD -MP -MF .deps/gmapl_nosimd-pairpool.Tpo -c -o gmapl_nosimd-pairpool.o `test -f 'pairpool.c' || echo './'`pairpool.c mv -f .deps/gmapl_nosimd-transcript.Tpo .deps/gmapl_nosimd-transcript.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-cellpool.o -MD -MP -MF .deps/gmapl_nosimd-cellpool.Tpo -c -o gmapl_nosimd-cellpool.o `test -f 'cellpool.c' || echo './'`cellpool.c mv -f .deps/gmapl_nosimd-cellpool.Tpo .deps/gmapl_nosimd-cellpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-stage2.o -MD -MP -MF .deps/gmapl_nosimd-stage2.Tpo -c -o gmapl_nosimd-stage2.o `test -f 'stage2.c' || echo './'`stage2.c mv -f .deps/gmap_nosimd-stage3.Tpo .deps/gmap_nosimd-stage3.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-doublelist.o -MD -MP -MF .deps/gmapl_nosimd-doublelist.Tpo -c -o gmapl_nosimd-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c mv -f .deps/gmapl_nosimd-doublelist.Tpo .deps/gmapl_nosimd-doublelist.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-smooth.o -MD -MP -MF .deps/gmapl_nosimd-smooth.Tpo -c -o gmapl_nosimd-smooth.o `test -f 'smooth.c' || echo './'`smooth.c mv -f .deps/gmapl_nosimd-genome.Tpo .deps/gmapl_nosimd-genome.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-splicestringpool.o -MD -MP -MF .deps/gmapl_nosimd-splicestringpool.Tpo -c -o gmapl_nosimd-splicestringpool.o `test -f 'splicestringpool.c' || echo './'`splicestringpool.c mv -f .deps/gmapl_nosimd-splicestringpool.Tpo .deps/gmapl_nosimd-splicestringpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-splicetrie_build.o -MD -MP -MF .deps/gmapl_nosimd-splicetrie_build.Tpo -c -o gmapl_nosimd-splicetrie_build.o `test -f 'splicetrie_build.c' || echo './'`splicetrie_build.c mv -f .deps/gmapl_nosimd-pairpool.Tpo .deps/gmapl_nosimd-pairpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-splicetrie.o -MD -MP -MF .deps/gmapl_nosimd-splicetrie.Tpo -c -o gmapl_nosimd-splicetrie.o `test -f 'splicetrie.c' || echo './'`splicetrie.c mv -f .deps/gmapl_nosimd-stage1.Tpo .deps/gmapl_nosimd-stage1.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-boyer-moore.o -MD -MP -MF .deps/gmapl_nosimd-boyer-moore.Tpo -c -o gmapl_nosimd-boyer-moore.o `test -f 'boyer-moore.c' || echo './'`boyer-moore.c mv -f .deps/gmapl_nosimd-iit-read.Tpo .deps/gmapl_nosimd-iit-read.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-dynprog.o -MD -MP -MF .deps/gmapl_nosimd-dynprog.Tpo -c -o gmapl_nosimd-dynprog.o `test -f 'dynprog.c' || echo './'`dynprog.c mv -f .deps/gmapl_nosimd-boyer-moore.Tpo .deps/gmapl_nosimd-boyer-moore.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-dynprog_simd.o -MD -MP -MF .deps/gmapl_nosimd-dynprog_simd.Tpo -c -o gmapl_nosimd-dynprog_simd.o `test -f 'dynprog_simd.c' || echo './'`dynprog_simd.c mv -f .deps/gmapl_nosimd-dynprog_simd.Tpo .deps/gmapl_nosimd-dynprog_simd.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-dynprog_single.o -MD -MP -MF .deps/gmapl_nosimd-dynprog_single.Tpo -c -o gmapl_nosimd-dynprog_single.o `test -f 'dynprog_single.c' || echo './'`dynprog_single.c mv -f .deps/gmapl_nosimd-smooth.Tpo .deps/gmapl_nosimd-smooth.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-dynprog_genome.o -MD -MP -MF .deps/gmapl_nosimd-dynprog_genome.Tpo -c -o gmapl_nosimd-dynprog_genome.o `test -f 'dynprog_genome.c' || echo './'`dynprog_genome.c mv -f .deps/gmapl_nosimd-splicetrie.Tpo .deps/gmapl_nosimd-splicetrie.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-dynprog_cdna.o -MD -MP -MF .deps/gmapl_nosimd-dynprog_cdna.Tpo -c -o gmapl_nosimd-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo './'`dynprog_cdna.c mv -f .deps/gmapl_nosimd-maxent.Tpo .deps/gmapl_nosimd-maxent.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-dynprog_end.o -MD -MP -MF .deps/gmapl_nosimd-dynprog_end.Tpo -c -o gmapl_nosimd-dynprog_end.o `test -f 'dynprog_end.c' || echo './'`dynprog_end.c mv -f .deps/gmapl_nosimd-dynprog.Tpo .deps/gmapl_nosimd-dynprog.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-translation.o -MD -MP -MF .deps/gmapl_nosimd-translation.Tpo -c -o gmapl_nosimd-translation.o `test -f 'translation.c' || echo './'`translation.c mv -f .deps/gmapl_nosimd-dynprog_cdna.Tpo .deps/gmapl_nosimd-dynprog_cdna.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-pbinom.o -MD -MP -MF .deps/gmapl_nosimd-pbinom.Tpo -c -o gmapl_nosimd-pbinom.o `test -f 'pbinom.c' || echo './'`pbinom.c mv -f .deps/gmapl_nosimd-dynprog_single.Tpo .deps/gmapl_nosimd-dynprog_single.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-changepoint.o -MD -MP -MF .deps/gmapl_nosimd-changepoint.Tpo -c -o gmapl_nosimd-changepoint.o `test -f 'changepoint.c' || echo './'`changepoint.c mv -f .deps/gmapl_nosimd-changepoint.Tpo .deps/gmapl_nosimd-changepoint.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-stage3.o -MD -MP -MF .deps/gmapl_nosimd-stage3.Tpo -c -o gmapl_nosimd-stage3.o `test -f 'stage3.c' || echo './'`stage3.c mv -f .deps/gmapl_nosimd-pbinom.Tpo .deps/gmapl_nosimd-pbinom.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-request.o -MD -MP -MF .deps/gmapl_nosimd-request.Tpo -c -o gmapl_nosimd-request.o `test -f 'request.c' || echo './'`request.c mv -f .deps/gmapl_nosimd-request.Tpo .deps/gmapl_nosimd-request.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-result.o -MD -MP -MF .deps/gmapl_nosimd-result.Tpo -c -o gmapl_nosimd-result.o `test -f 'result.c' || echo './'`result.c mv -f .deps/gmapl_nosimd-dynprog_genome.Tpo .deps/gmapl_nosimd-dynprog_genome.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-output.o -MD -MP -MF .deps/gmapl_nosimd-output.Tpo -c -o gmapl_nosimd-output.o `test -f 'output.c' || echo './'`output.c mv -f .deps/gmapl_nosimd-result.Tpo .deps/gmapl_nosimd-result.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-inbuffer.o -MD -MP -MF .deps/gmapl_nosimd-inbuffer.Tpo -c -o gmapl_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c mv -f .deps/gmapl_nosimd-dynprog_end.Tpo .deps/gmapl_nosimd-dynprog_end.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-samheader.o -MD -MP -MF .deps/gmapl_nosimd-samheader.Tpo -c -o gmapl_nosimd-samheader.o `test -f 'samheader.c' || echo './'`samheader.c mv -f .deps/gmapl_nosimd-inbuffer.Tpo .deps/gmapl_nosimd-inbuffer.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-outbuffer.o -MD -MP -MF .deps/gmapl_nosimd-outbuffer.Tpo -c -o gmapl_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c mv -f .deps/gmapl_nosimd-stage2.Tpo .deps/gmapl_nosimd-stage2.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-chimera.o -MD -MP -MF .deps/gmapl_nosimd-chimera.Tpo -c -o gmapl_nosimd-chimera.o `test -f 'chimera.c' || echo './'`chimera.c mv -f .deps/gmapl_nosimd-samheader.Tpo .deps/gmapl_nosimd-samheader.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-datadir.o -MD -MP -MF .deps/gmapl_nosimd-datadir.Tpo -c -o gmapl_nosimd-datadir.o `test -f 'datadir.c' || echo './'`datadir.c mv -f .deps/gmapl_nosimd-output.Tpo .deps/gmapl_nosimd-output.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-parserange.o -MD -MP -MF .deps/gmapl_nosimd-parserange.Tpo -c -o gmapl_nosimd-parserange.o `test -f 'parserange.c' || echo './'`parserange.c mv -f .deps/gmapl_nosimd-outbuffer.Tpo .deps/gmapl_nosimd-outbuffer.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-getline.o -MD -MP -MF .deps/gmapl_nosimd-getline.Tpo -c -o gmapl_nosimd-getline.o `test -f 'getline.c' || echo './'`getline.c mv -f .deps/gmapl_nosimd-datadir.Tpo .deps/gmapl_nosimd-datadir.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-getopt.o -MD -MP -MF .deps/gmapl_nosimd-getopt.Tpo -c -o gmapl_nosimd-getopt.o `test -f 'getopt.c' || echo './'`getopt.c mv -f .deps/gmapl_nosimd-getline.Tpo .deps/gmapl_nosimd-getline.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-getopt1.o -MD -MP -MF .deps/gmapl_nosimd-getopt1.Tpo -c -o gmapl_nosimd-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c mv -f .deps/gmapl_nosimd-translation.Tpo .deps/gmapl_nosimd-translation.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gmapl_nosimd-gmap.o -MD -MP -MF .deps/gmapl_nosimd-gmap.Tpo -c -o gmapl_nosimd-gmap.o `test -f 'gmap.c' || echo './'`gmap.c mv -f .deps/gmapl_nosimd-getopt1.Tpo .deps/gmapl_nosimd-getopt1.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-except.o -MD -MP -MF .deps/gsnap_nosimd-except.Tpo -c -o gsnap_nosimd-except.o `test -f 'except.c' || echo './'`except.c mv -f .deps/gmapl_nosimd-parserange.Tpo .deps/gmapl_nosimd-parserange.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-assert.o -MD -MP -MF .deps/gsnap_nosimd-assert.Tpo -c -o gsnap_nosimd-assert.o `test -f 'assert.c' || echo './'`assert.c mv -f .deps/gsnap_nosimd-assert.Tpo .deps/gsnap_nosimd-assert.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-mem.o -MD -MP -MF .deps/gsnap_nosimd-mem.Tpo -c -o gsnap_nosimd-mem.o `test -f 'mem.c' || echo './'`mem.c mv -f .deps/gmapl_nosimd-getopt.Tpo .deps/gmapl_nosimd-getopt.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-intlist.o -MD -MP -MF .deps/gsnap_nosimd-intlist.Tpo -c -o gsnap_nosimd-intlist.o `test -f 'intlist.c' || echo './'`intlist.c mv -f .deps/gmapl_nosimd-chimera.Tpo .deps/gmapl_nosimd-chimera.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-uintlist.o -MD -MP -MF .deps/gsnap_nosimd-uintlist.Tpo -c -o gsnap_nosimd-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c mv -f .deps/gsnap_nosimd-except.Tpo .deps/gsnap_nosimd-except.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-list.o -MD -MP -MF .deps/gsnap_nosimd-list.Tpo -c -o gsnap_nosimd-list.o `test -f 'list.c' || echo './'`list.c mv -f .deps/gmapl_nosimd-maxent_hr.Tpo .deps/gmapl_nosimd-maxent_hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-littleendian.o -MD -MP -MF .deps/gsnap_nosimd-littleendian.Tpo -c -o gsnap_nosimd-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c mv -f .deps/gsnap_nosimd-littleendian.Tpo .deps/gsnap_nosimd-littleendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-bigendian.o -MD -MP -MF .deps/gsnap_nosimd-bigendian.Tpo -c -o gsnap_nosimd-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c mv -f .deps/gmapl_nosimd-oligoindex_hr.Tpo .deps/gmapl_nosimd-oligoindex_hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-univinterval.o -MD -MP -MF .deps/gsnap_nosimd-univinterval.Tpo -c -o gsnap_nosimd-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c mv -f .deps/gsnap_nosimd-mem.Tpo .deps/gsnap_nosimd-mem.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-interval.o -MD -MP -MF .deps/gsnap_nosimd-interval.Tpo -c -o gsnap_nosimd-interval.o `test -f 'interval.c' || echo './'`interval.c mv -f .deps/gsnap_nosimd-list.Tpo .deps/gsnap_nosimd-list.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-stopwatch.o -MD -MP -MF .deps/gsnap_nosimd-stopwatch.Tpo -c -o gsnap_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c mv -f .deps/gsnap_nosimd-univinterval.Tpo .deps/gsnap_nosimd-univinterval.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-semaphore.o -MD -MP -MF .deps/gsnap_nosimd-semaphore.Tpo -c -o gsnap_nosimd-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c mv -f .deps/gsnap_nosimd-interval.Tpo .deps/gsnap_nosimd-interval.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-access.o -MD -MP -MF .deps/gsnap_nosimd-access.Tpo -c -o gsnap_nosimd-access.o `test -f 'access.c' || echo './'`access.c mv -f .deps/gsnap_nosimd-bigendian.Tpo .deps/gsnap_nosimd-bigendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-filestring.o -MD -MP -MF .deps/gsnap_nosimd-filestring.Tpo -c -o gsnap_nosimd-filestring.o `test -f 'filestring.c' || echo './'`filestring.c mv -f .deps/gsnap_nosimd-stopwatch.Tpo .deps/gsnap_nosimd-stopwatch.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-iit-read-univ.o -MD -MP -MF .deps/gsnap_nosimd-iit-read-univ.Tpo -c -o gsnap_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c mv -f .deps/gsnap_nosimd-intlist.Tpo .deps/gsnap_nosimd-intlist.Po mv -f .deps/gmapl_nosimd-splicetrie_build.Tpo .deps/gmapl_nosimd-splicetrie_build.Po mv -f .deps/gsnap_nosimd-semaphore.Tpo .deps/gsnap_nosimd-semaphore.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-iit-read.o -MD -MP -MF .deps/gsnap_nosimd-iit-read.Tpo -c -o gsnap_nosimd-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-bzip2.o -MD -MP -MF .deps/gsnap_nosimd-bzip2.Tpo -c -o gsnap_nosimd-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c mv -f .deps/gsnap_nosimd-uintlist.Tpo .deps/gsnap_nosimd-uintlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-reader.o -MD -MP -MF .deps/gsnap_nosimd-reader.Tpo -c -o gsnap_nosimd-reader.o `test -f 'reader.c' || echo './'`reader.c cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-genomicpos.o -MD -MP -MF .deps/gsnap_nosimd-genomicpos.Tpo -c -o gsnap_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c mv -f .deps/gsnap_nosimd-genomicpos.Tpo .deps/gsnap_nosimd-genomicpos.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-compress.o -MD -MP -MF .deps/gsnap_nosimd-compress.Tpo -c -o gsnap_nosimd-compress.o `test -f 'compress.c' || echo './'`compress.c mv -f .deps/gsnap_nosimd-reader.Tpo .deps/gsnap_nosimd-reader.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-genome.o -MD -MP -MF .deps/gsnap_nosimd-genome.Tpo -c -o gsnap_nosimd-genome.o `test -f 'genome.c' || echo './'`genome.c mv -f .deps/gsnap_nosimd-bzip2.Tpo .deps/gsnap_nosimd-bzip2.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-transcriptome.o -MD -MP -MF .deps/gsnap_nosimd-transcriptome.Tpo -c -o gsnap_nosimd-transcriptome.o `test -f 'transcriptome.c' || echo './'`transcriptome.c mv -f .deps/gmapl_nosimd-pair.Tpo .deps/gmapl_nosimd-pair.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-popcount.o -MD -MP -MF .deps/gsnap_nosimd-popcount.Tpo -c -o gsnap_nosimd-popcount.o `test -f 'popcount.c' || echo './'`popcount.c mv -f .deps/gsnap_nosimd-access.Tpo .deps/gsnap_nosimd-access.Po mv -f .deps/gsnap_nosimd-transcriptome.Tpo .deps/gsnap_nosimd-transcriptome.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-genome128_hr.o -MD -MP -MF .deps/gsnap_nosimd-genome128_hr.Tpo -c -o gsnap_nosimd-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c mv -f .deps/gsnap_nosimd-filestring.Tpo .deps/gsnap_nosimd-filestring.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-genome128_consec.o -MD -MP -MF .deps/gsnap_nosimd-genome128_consec.Tpo -c -o gsnap_nosimd-genome128_consec.o `test -f 'genome128_consec.c' || echo './'`genome128_consec.c cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-genome_sites.o -MD -MP -MF .deps/gsnap_nosimd-genome_sites.Tpo -c -o gsnap_nosimd-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c mv -f .deps/gsnap_nosimd-compress.Tpo .deps/gsnap_nosimd-compress.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-bitpack64-read.o -MD -MP -MF .deps/gsnap_nosimd-bitpack64-read.Tpo -c -o gsnap_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c mv -f .deps/gsnap_nosimd-popcount.Tpo .deps/gsnap_nosimd-popcount.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-bitpack64-readtwo.o -MD -MP -MF .deps/gsnap_nosimd-bitpack64-readtwo.Tpo -c -o gsnap_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c mv -f .deps/gsnap_nosimd-genome128_consec.Tpo .deps/gsnap_nosimd-genome128_consec.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-merge-uint4.o -MD -MP -MF .deps/gsnap_nosimd-merge-uint4.Tpo -c -o gsnap_nosimd-merge-uint4.o `test -f 'merge-uint4.c' || echo './'`merge-uint4.c mv -f .deps/gsnap_nosimd-merge-uint4.Tpo .deps/gsnap_nosimd-merge-uint4.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-merge-diagonals-simd-uint4.o -MD -MP -MF .deps/gsnap_nosimd-merge-diagonals-simd-uint4.Tpo -c -o gsnap_nosimd-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo './'`merge-diagonals-simd-uint4.c mv -f .deps/gsnap_nosimd-iit-read-univ.Tpo .deps/gsnap_nosimd-iit-read-univ.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-indexdb.o -MD -MP -MF .deps/gsnap_nosimd-indexdb.Tpo -c -o gsnap_nosimd-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c mv -f .deps/gsnap_nosimd-bitpack64-readtwo.Tpo .deps/gsnap_nosimd-bitpack64-readtwo.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-regiondb.o -MD -MP -MF .deps/gsnap_nosimd-regiondb.Tpo -c -o gsnap_nosimd-regiondb.o `test -f 'regiondb.c' || echo './'`regiondb.c mv -f .deps/gsnap_nosimd-bitpack64-read.Tpo .deps/gsnap_nosimd-bitpack64-read.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-oligo.o -MD -MP -MF .deps/gsnap_nosimd-oligo.Tpo -c -o gsnap_nosimd-oligo.o `test -f 'oligo.c' || echo './'`oligo.c mv -f .deps/gsnap_nosimd-merge-diagonals-simd-uint4.Tpo .deps/gsnap_nosimd-merge-diagonals-simd-uint4.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-chrnum.o -MD -MP -MF .deps/gsnap_nosimd-chrnum.Tpo -c -o gsnap_nosimd-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c mv -f .deps/gsnap_nosimd-chrnum.Tpo .deps/gsnap_nosimd-chrnum.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-maxent_hr.o -MD -MP -MF .deps/gsnap_nosimd-maxent_hr.Tpo -c -o gsnap_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c mv -f .deps/gsnap_nosimd-oligo.Tpo .deps/gsnap_nosimd-oligo.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-mdprint.o -MD -MP -MF .deps/gsnap_nosimd-mdprint.Tpo -c -o gsnap_nosimd-mdprint.o `test -f 'mdprint.c' || echo './'`mdprint.c mv -f .deps/gsnap_nosimd-regiondb.Tpo .deps/gsnap_nosimd-regiondb.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-cigar.o -MD -MP -MF .deps/gsnap_nosimd-cigar.Tpo -c -o gsnap_nosimd-cigar.o `test -f 'cigar.c' || echo './'`cigar.c mv -f .deps/gsnap_nosimd-mdprint.Tpo .deps/gsnap_nosimd-mdprint.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-samprint.o -MD -MP -MF .deps/gsnap_nosimd-samprint.Tpo -c -o gsnap_nosimd-samprint.o `test -f 'samprint.c' || echo './'`samprint.c mv -f .deps/gsnap_nosimd-indexdb.Tpo .deps/gsnap_nosimd-indexdb.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-mapq.o -MD -MP -MF .deps/gsnap_nosimd-mapq.Tpo -c -o gsnap_nosimd-mapq.o `test -f 'mapq.c' || echo './'`mapq.c mv -f .deps/gsnap_nosimd-mapq.Tpo .deps/gsnap_nosimd-mapq.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-fopen.o -MD -MP -MF .deps/gsnap_nosimd-fopen.Tpo -c -o gsnap_nosimd-fopen.o `test -f 'fopen.c' || echo './'`fopen.c mv -f .deps/gsnap_nosimd-fopen.Tpo .deps/gsnap_nosimd-fopen.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-shortread.o -MD -MP -MF .deps/gsnap_nosimd-shortread.Tpo -c -o gsnap_nosimd-shortread.o `test -f 'shortread.c' || echo './'`shortread.c mv -f .deps/gsnap_nosimd-genome128_hr.Tpo .deps/gsnap_nosimd-genome128_hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-substring.o -MD -MP -MF .deps/gsnap_nosimd-substring.Tpo -c -o gsnap_nosimd-substring.o `test -f 'substring.c' || echo './'`substring.c mv -f .deps/gsnap_nosimd-cigar.Tpo .deps/gsnap_nosimd-cigar.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-junction.o -MD -MP -MF .deps/gsnap_nosimd-junction.Tpo -c -o gsnap_nosimd-junction.o `test -f 'junction.c' || echo './'`junction.c mv -f .deps/gmapl_nosimd-gmap.Tpo .deps/gmapl_nosimd-gmap.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-transcript.o -MD -MP -MF .deps/gsnap_nosimd-transcript.Tpo -c -o gsnap_nosimd-transcript.o `test -f 'transcript.c' || echo './'`transcript.c mv -f .deps/gsnap_nosimd-genome_sites.Tpo .deps/gsnap_nosimd-genome_sites.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-method.o -MD -MP -MF .deps/gsnap_nosimd-method.Tpo -c -o gsnap_nosimd-method.o `test -f 'method.c' || echo './'`method.c mv -f .deps/gsnap_nosimd-genome.Tpo .deps/gsnap_nosimd-genome.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-stage3hr.o -MD -MP -MF .deps/gsnap_nosimd-stage3hr.Tpo -c -o gsnap_nosimd-stage3hr.o `test -f 'stage3hr.c' || echo './'`stage3hr.c mv -f .deps/gsnap_nosimd-junction.Tpo .deps/gsnap_nosimd-junction.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-ladder.o -MD -MP -MF .deps/gsnap_nosimd-ladder.Tpo -c -o gsnap_nosimd-ladder.o `test -f 'ladder.c' || echo './'`ladder.c mv -f .deps/gsnap_nosimd-method.Tpo .deps/gsnap_nosimd-method.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-concordance.o -MD -MP -MF .deps/gsnap_nosimd-concordance.Tpo -c -o gsnap_nosimd-concordance.o `test -f 'concordance.c' || echo './'`concordance.c mv -f .deps/gsnap_nosimd-samprint.Tpo .deps/gsnap_nosimd-samprint.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-simplepair.o -MD -MP -MF .deps/gsnap_nosimd-simplepair.Tpo -c -o gsnap_nosimd-simplepair.o `test -f 'simplepair.c' || echo './'`simplepair.c mv -f .deps/gsnap_nosimd-transcript.Tpo .deps/gsnap_nosimd-transcript.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-maxent.o -MD -MP -MF .deps/gsnap_nosimd-maxent.Tpo -c -o gsnap_nosimd-maxent.o `test -f 'maxent.c' || echo './'`maxent.c mv -f .deps/gsnap_nosimd-ladder.Tpo .deps/gsnap_nosimd-ladder.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-orderstat.o -MD -MP -MF .deps/gsnap_nosimd-orderstat.Tpo -c -o gsnap_nosimd-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c mv -f .deps/gsnap_nosimd-orderstat.Tpo .deps/gsnap_nosimd-orderstat.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-intlistpool.o -MD -MP -MF .deps/gsnap_nosimd-intlistpool.Tpo -c -o gsnap_nosimd-intlistpool.o `test -f 'intlistpool.c' || echo './'`intlistpool.c mv -f .deps/gmapl_nosimd-stage3.Tpo .deps/gmapl_nosimd-stage3.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-uintlistpool.o -MD -MP -MF .deps/gsnap_nosimd-uintlistpool.Tpo -c -o gsnap_nosimd-uintlistpool.o `test -f 'uintlistpool.c' || echo './'`uintlistpool.c mv -f .deps/gsnap_nosimd-concordance.Tpo .deps/gsnap_nosimd-concordance.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-listpool.o -MD -MP -MF .deps/gsnap_nosimd-listpool.Tpo -c -o gsnap_nosimd-listpool.o `test -f 'listpool.c' || echo './'`listpool.c mv -f .deps/gsnap_nosimd-intlistpool.Tpo .deps/gsnap_nosimd-intlistpool.Po mv -f .deps/gsnap_nosimd-iit-read.Tpo .deps/gsnap_nosimd-iit-read.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-hitlistpool.o -MD -MP -MF .deps/gsnap_nosimd-hitlistpool.Tpo -c -o gsnap_nosimd-hitlistpool.o `test -f 'hitlistpool.c' || echo './'`hitlistpool.c cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-intron.o -MD -MP -MF .deps/gsnap_nosimd-intron.Tpo -c -o gsnap_nosimd-intron.o `test -f 'intron.c' || echo './'`intron.c mv -f .deps/gsnap_nosimd-listpool.Tpo .deps/gsnap_nosimd-listpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-gbuffer.o -MD -MP -MF .deps/gsnap_nosimd-gbuffer.Tpo -c -o gsnap_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c mv -f .deps/gsnap_nosimd-hitlistpool.Tpo .deps/gsnap_nosimd-hitlistpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-knownsplicing.o -MD -MP -MF .deps/gsnap_nosimd-knownsplicing.Tpo -c -o gsnap_nosimd-knownsplicing.o `test -f 'knownsplicing.c' || echo './'`knownsplicing.c mv -f .deps/gsnap_nosimd-uintlistpool.Tpo .deps/gsnap_nosimd-uintlistpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-splice.o -MD -MP -MF .deps/gsnap_nosimd-splice.Tpo -c -o gsnap_nosimd-splice.o `test -f 'splice.c' || echo './'`splice.c mv -f .deps/gsnap_nosimd-intron.Tpo .deps/gsnap_nosimd-intron.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-indel.o -MD -MP -MF .deps/gsnap_nosimd-indel.Tpo -c -o gsnap_nosimd-indel.o `test -f 'indel.c' || echo './'`indel.c mv -f .deps/gsnap_nosimd-gbuffer.Tpo .deps/gsnap_nosimd-gbuffer.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-bitpack64-access.o -MD -MP -MF .deps/gsnap_nosimd-bitpack64-access.Tpo -c -o gsnap_nosimd-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c mv -f .deps/gsnap_nosimd-simplepair.Tpo .deps/gsnap_nosimd-simplepair.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-univdiag.o -MD -MP -MF .deps/gsnap_nosimd-univdiag.Tpo -c -o gsnap_nosimd-univdiag.o `test -f 'univdiag.c' || echo './'`univdiag.c mv -f .deps/gsnap_nosimd-univdiag.Tpo .deps/gsnap_nosimd-univdiag.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-univdiagpool.o -MD -MP -MF .deps/gsnap_nosimd-univdiagpool.Tpo -c -o gsnap_nosimd-univdiagpool.o `test -f 'univdiagpool.c' || echo './'`univdiagpool.c mv -f .deps/gsnap_nosimd-shortread.Tpo .deps/gsnap_nosimd-shortread.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-sedgesort.o -MD -MP -MF .deps/gsnap_nosimd-sedgesort.Tpo -c -o gsnap_nosimd-sedgesort.o `test -f 'sedgesort.c' || echo './'`sedgesort.c mv -f .deps/gsnap_nosimd-univdiagpool.Tpo .deps/gsnap_nosimd-univdiagpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-intersect.o -MD -MP -MF .deps/gsnap_nosimd-intersect.Tpo -c -o gsnap_nosimd-intersect.o `test -f 'intersect.c' || echo './'`intersect.c mv -f .deps/gsnap_nosimd-knownsplicing.Tpo .deps/gsnap_nosimd-knownsplicing.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-kmer-search.o -MD -MP -MF .deps/gsnap_nosimd-kmer-search.Tpo -c -o gsnap_nosimd-kmer-search.o `test -f 'kmer-search.c' || echo './'`kmer-search.c mv -f .deps/gsnap_nosimd-sedgesort.Tpo .deps/gsnap_nosimd-sedgesort.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-path-solve.o -MD -MP -MF .deps/gsnap_nosimd-path-solve.Tpo -c -o gsnap_nosimd-path-solve.o `test -f 'path-solve.c' || echo './'`path-solve.c mv -f .deps/gsnap_nosimd-substring.Tpo .deps/gsnap_nosimd-substring.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-extension-search.o -MD -MP -MF .deps/gsnap_nosimd-extension-search.Tpo -c -o gsnap_nosimd-extension-search.o `test -f 'extension-search.c' || echo './'`extension-search.c mv -f .deps/gsnap_nosimd-maxent_hr.Tpo .deps/gsnap_nosimd-maxent_hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-segment-search.o -MD -MP -MF .deps/gsnap_nosimd-segment-search.Tpo -c -o gsnap_nosimd-segment-search.o `test -f 'segment-search.c' || echo './'`segment-search.c mv -f .deps/gsnap_nosimd-indel.Tpo .deps/gsnap_nosimd-indel.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-terminal.o -MD -MP -MF .deps/gsnap_nosimd-terminal.Tpo -c -o gsnap_nosimd-terminal.o `test -f 'terminal.c' || echo './'`terminal.c mv -f .deps/gsnap_nosimd-intersect.Tpo .deps/gsnap_nosimd-intersect.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-distant-rna.o -MD -MP -MF .deps/gsnap_nosimd-distant-rna.Tpo -c -o gsnap_nosimd-distant-rna.o `test -f 'distant-rna.c' || echo './'`distant-rna.c mv -f .deps/gsnap_nosimd-maxent.Tpo .deps/gsnap_nosimd-maxent.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-distant-dna.o -MD -MP -MF .deps/gsnap_nosimd-distant-dna.Tpo -c -o gsnap_nosimd-distant-dna.o `test -f 'distant-dna.c' || echo './'`distant-dna.c mv -f .deps/gsnap_nosimd-terminal.Tpo .deps/gsnap_nosimd-terminal.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-uint8table_rh.o -MD -MP -MF .deps/gsnap_nosimd-uint8table_rh.Tpo -c -o gsnap_nosimd-uint8table_rh.o `test -f 'uint8table_rh.c' || echo './'`uint8table_rh.c mv -f .deps/gsnap_nosimd-uint8table_rh.Tpo .deps/gsnap_nosimd-uint8table_rh.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-uinttable_rh.o -MD -MP -MF .deps/gsnap_nosimd-uinttable_rh.Tpo -c -o gsnap_nosimd-uinttable_rh.o `test -f 'uinttable_rh.c' || echo './'`uinttable_rh.c mv -f .deps/gsnap_nosimd-segment-search.Tpo .deps/gsnap_nosimd-segment-search.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-stage1hr.o -MD -MP -MF .deps/gsnap_nosimd-stage1hr.Tpo -c -o gsnap_nosimd-stage1hr.o `test -f 'stage1hr.c' || echo './'`stage1hr.c mv -f .deps/gsnap_nosimd-uinttable_rh.Tpo .deps/gsnap_nosimd-uinttable_rh.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-request.o -MD -MP -MF .deps/gsnap_nosimd-request.Tpo -c -o gsnap_nosimd-request.o `test -f 'request.c' || echo './'`request.c mv -f .deps/gsnap_nosimd-distant-dna.Tpo .deps/gsnap_nosimd-distant-dna.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-resulthr.o -MD -MP -MF .deps/gsnap_nosimd-resulthr.Tpo -c -o gsnap_nosimd-resulthr.o `test -f 'resulthr.c' || echo './'`resulthr.c mv -f .deps/gsnap_nosimd-extension-search.Tpo .deps/gsnap_nosimd-extension-search.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-output.o -MD -MP -MF .deps/gsnap_nosimd-output.Tpo -c -o gsnap_nosimd-output.o `test -f 'output.c' || echo './'`output.c mv -f .deps/gsnap_nosimd-bitpack64-access.Tpo .deps/gsnap_nosimd-bitpack64-access.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-inbuffer.o -MD -MP -MF .deps/gsnap_nosimd-inbuffer.Tpo -c -o gsnap_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c mv -f .deps/gsnap_nosimd-request.Tpo .deps/gsnap_nosimd-request.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-samheader.o -MD -MP -MF .deps/gsnap_nosimd-samheader.Tpo -c -o gsnap_nosimd-samheader.o `test -f 'samheader.c' || echo './'`samheader.c mv -f .deps/gsnap_nosimd-output.Tpo .deps/gsnap_nosimd-output.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-outbuffer.o -MD -MP -MF .deps/gsnap_nosimd-outbuffer.Tpo -c -o gsnap_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c mv -f .deps/gsnap_nosimd-samheader.Tpo .deps/gsnap_nosimd-samheader.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-datadir.o -MD -MP -MF .deps/gsnap_nosimd-datadir.Tpo -c -o gsnap_nosimd-datadir.o `test -f 'datadir.c' || echo './'`datadir.c mv -f .deps/gsnap_nosimd-resulthr.Tpo .deps/gsnap_nosimd-resulthr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-parserange.o -MD -MP -MF .deps/gsnap_nosimd-parserange.Tpo -c -o gsnap_nosimd-parserange.o `test -f 'parserange.c' || echo './'`parserange.c mv -f .deps/gsnap_nosimd-inbuffer.Tpo .deps/gsnap_nosimd-inbuffer.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-getline.o -MD -MP -MF .deps/gsnap_nosimd-getline.Tpo -c -o gsnap_nosimd-getline.o `test -f 'getline.c' || echo './'`getline.c mv -f .deps/gsnap_nosimd-getline.Tpo .deps/gsnap_nosimd-getline.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-getopt.o -MD -MP -MF .deps/gsnap_nosimd-getopt.Tpo -c -o gsnap_nosimd-getopt.o `test -f 'getopt.c' || echo './'`getopt.c mv -f .deps/gsnap_nosimd-datadir.Tpo .deps/gsnap_nosimd-datadir.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-getopt1.o -MD -MP -MF .deps/gsnap_nosimd-getopt1.Tpo -c -o gsnap_nosimd-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c mv -f .deps/gsnap_nosimd-outbuffer.Tpo .deps/gsnap_nosimd-outbuffer.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnap_nosimd-gsnap.o -MD -MP -MF .deps/gsnap_nosimd-gsnap.Tpo -c -o gsnap_nosimd-gsnap.o `test -f 'gsnap.c' || echo './'`gsnap.c mv -f .deps/gsnap_nosimd-getopt1.Tpo .deps/gsnap_nosimd-getopt1.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-except.o -MD -MP -MF .deps/gsnapl_nosimd-except.Tpo -c -o gsnapl_nosimd-except.o `test -f 'except.c' || echo './'`except.c mv -f .deps/gsnapl_nosimd-except.Tpo .deps/gsnapl_nosimd-except.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-assert.o -MD -MP -MF .deps/gsnapl_nosimd-assert.Tpo -c -o gsnapl_nosimd-assert.o `test -f 'assert.c' || echo './'`assert.c mv -f .deps/gsnap_nosimd-splice.Tpo .deps/gsnap_nosimd-splice.Po mv -f .deps/gsnapl_nosimd-assert.Tpo .deps/gsnapl_nosimd-assert.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-mem.o -MD -MP -MF .deps/gsnapl_nosimd-mem.Tpo -c -o gsnapl_nosimd-mem.o `test -f 'mem.c' || echo './'`mem.c cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-intlist.o -MD -MP -MF .deps/gsnapl_nosimd-intlist.Tpo -c -o gsnapl_nosimd-intlist.o `test -f 'intlist.c' || echo './'`intlist.c mv -f .deps/gsnap_nosimd-distant-rna.Tpo .deps/gsnap_nosimd-distant-rna.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-uintlist.o -MD -MP -MF .deps/gsnapl_nosimd-uintlist.Tpo -c -o gsnapl_nosimd-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c mv -f .deps/gsnap_nosimd-parserange.Tpo .deps/gsnap_nosimd-parserange.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-uint8list.o -MD -MP -MF .deps/gsnapl_nosimd-uint8list.Tpo -c -o gsnapl_nosimd-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c mv -f .deps/gsnap_nosimd-getopt.Tpo .deps/gsnap_nosimd-getopt.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-list.o -MD -MP -MF .deps/gsnapl_nosimd-list.Tpo -c -o gsnapl_nosimd-list.o `test -f 'list.c' || echo './'`list.c mv -f .deps/gsnapl_nosimd-uintlist.Tpo .deps/gsnapl_nosimd-uintlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-littleendian.o -MD -MP -MF .deps/gsnapl_nosimd-littleendian.Tpo -c -o gsnapl_nosimd-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c mv -f .deps/gsnapl_nosimd-mem.Tpo .deps/gsnapl_nosimd-mem.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-bigendian.o -MD -MP -MF .deps/gsnapl_nosimd-bigendian.Tpo -c -o gsnapl_nosimd-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c mv -f .deps/gsnapl_nosimd-littleendian.Tpo .deps/gsnapl_nosimd-littleendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-univinterval.o -MD -MP -MF .deps/gsnapl_nosimd-univinterval.Tpo -c -o gsnapl_nosimd-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c mv -f .deps/gsnapl_nosimd-uint8list.Tpo .deps/gsnapl_nosimd-uint8list.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-interval.o -MD -MP -MF .deps/gsnapl_nosimd-interval.Tpo -c -o gsnapl_nosimd-interval.o `test -f 'interval.c' || echo './'`interval.c mv -f .deps/gsnapl_nosimd-bigendian.Tpo .deps/gsnapl_nosimd-bigendian.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-stopwatch.o -MD -MP -MF .deps/gsnapl_nosimd-stopwatch.Tpo -c -o gsnapl_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c mv -f .deps/gsnapl_nosimd-univinterval.Tpo .deps/gsnapl_nosimd-univinterval.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-semaphore.o -MD -MP -MF .deps/gsnapl_nosimd-semaphore.Tpo -c -o gsnapl_nosimd-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c mv -f .deps/gsnapl_nosimd-stopwatch.Tpo .deps/gsnapl_nosimd-stopwatch.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-access.o -MD -MP -MF .deps/gsnapl_nosimd-access.Tpo -c -o gsnapl_nosimd-access.o `test -f 'access.c' || echo './'`access.c mv -f .deps/gsnapl_nosimd-list.Tpo .deps/gsnapl_nosimd-list.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-filestring.o -MD -MP -MF .deps/gsnapl_nosimd-filestring.Tpo -c -o gsnapl_nosimd-filestring.o `test -f 'filestring.c' || echo './'`filestring.c mv -f .deps/gsnap_nosimd-stage1hr.Tpo .deps/gsnap_nosimd-stage1hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-iit-read-univ.o -MD -MP -MF .deps/gsnapl_nosimd-iit-read-univ.Tpo -c -o gsnapl_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c mv -f .deps/gsnapl_nosimd-interval.Tpo .deps/gsnapl_nosimd-interval.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-iit-read.o -MD -MP -MF .deps/gsnapl_nosimd-iit-read.Tpo -c -o gsnapl_nosimd-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c mv -f .deps/gsnapl_nosimd-semaphore.Tpo .deps/gsnapl_nosimd-semaphore.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-bzip2.o -MD -MP -MF .deps/gsnapl_nosimd-bzip2.Tpo -c -o gsnapl_nosimd-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c mv -f .deps/gsnapl_nosimd-intlist.Tpo .deps/gsnapl_nosimd-intlist.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-reader.o -MD -MP -MF .deps/gsnapl_nosimd-reader.Tpo -c -o gsnapl_nosimd-reader.o `test -f 'reader.c' || echo './'`reader.c mv -f .deps/gsnapl_nosimd-bzip2.Tpo .deps/gsnapl_nosimd-bzip2.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-genomicpos.o -MD -MP -MF .deps/gsnapl_nosimd-genomicpos.Tpo -c -o gsnapl_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c mv -f .deps/gsnapl_nosimd-reader.Tpo .deps/gsnapl_nosimd-reader.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-compress.o -MD -MP -MF .deps/gsnapl_nosimd-compress.Tpo -c -o gsnapl_nosimd-compress.o `test -f 'compress.c' || echo './'`compress.c mv -f .deps/gsnap_nosimd-path-solve.Tpo .deps/gsnap_nosimd-path-solve.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-genome.o -MD -MP -MF .deps/gsnapl_nosimd-genome.Tpo -c -o gsnapl_nosimd-genome.o `test -f 'genome.c' || echo './'`genome.c mv -f .deps/gsnapl_nosimd-genomicpos.Tpo .deps/gsnapl_nosimd-genomicpos.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-transcriptome.o -MD -MP -MF .deps/gsnapl_nosimd-transcriptome.Tpo -c -o gsnapl_nosimd-transcriptome.o `test -f 'transcriptome.c' || echo './'`transcriptome.c mv -f .deps/gsnapl_nosimd-access.Tpo .deps/gsnapl_nosimd-access.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-popcount.o -MD -MP -MF .deps/gsnapl_nosimd-popcount.Tpo -c -o gsnapl_nosimd-popcount.o `test -f 'popcount.c' || echo './'`popcount.c mv -f .deps/gsnapl_nosimd-filestring.Tpo .deps/gsnapl_nosimd-filestring.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-genome128_hr.o -MD -MP -MF .deps/gsnapl_nosimd-genome128_hr.Tpo -c -o gsnapl_nosimd-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c mv -f .deps/gsnapl_nosimd-compress.Tpo .deps/gsnapl_nosimd-compress.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-genome128_consec.o -MD -MP -MF .deps/gsnapl_nosimd-genome128_consec.Tpo -c -o gsnapl_nosimd-genome128_consec.o `test -f 'genome128_consec.c' || echo './'`genome128_consec.c mv -f .deps/gsnapl_nosimd-transcriptome.Tpo .deps/gsnapl_nosimd-transcriptome.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-genome_sites.o -MD -MP -MF .deps/gsnapl_nosimd-genome_sites.Tpo -c -o gsnapl_nosimd-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c mv -f .deps/gsnapl_nosimd-popcount.Tpo .deps/gsnapl_nosimd-popcount.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-bitpack64-read.o -MD -MP -MF .deps/gsnapl_nosimd-bitpack64-read.Tpo -c -o gsnapl_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c mv -f .deps/gsnapl_nosimd-genome128_consec.Tpo .deps/gsnapl_nosimd-genome128_consec.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-bitpack64-readtwo.o -MD -MP -MF .deps/gsnapl_nosimd-bitpack64-readtwo.Tpo -c -o gsnapl_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c mv -f .deps/gsnapl_nosimd-iit-read-univ.Tpo .deps/gsnapl_nosimd-iit-read-univ.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-merge-diagonals-heap.o -MD -MP -MF .deps/gsnapl_nosimd-merge-diagonals-heap.Tpo -c -o gsnapl_nosimd-merge-diagonals-heap.o `test -f 'merge-diagonals-heap.c' || echo './'`merge-diagonals-heap.c mv -f .deps/gsnap_nosimd-stage3hr.Tpo .deps/gsnap_nosimd-stage3hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-merge-uint8.o -MD -MP -MF .deps/gsnapl_nosimd-merge-uint8.Tpo -c -o gsnapl_nosimd-merge-uint8.o `test -f 'merge-uint8.c' || echo './'`merge-uint8.c mv -f .deps/gsnapl_nosimd-merge-uint8.Tpo .deps/gsnapl_nosimd-merge-uint8.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-merge-diagonals-simd-uint8.o -MD -MP -MF .deps/gsnapl_nosimd-merge-diagonals-simd-uint8.Tpo -c -o gsnapl_nosimd-merge-diagonals-simd-uint8.o `test -f 'merge-diagonals-simd-uint8.c' || echo './'`merge-diagonals-simd-uint8.c mv -f .deps/gsnapl_nosimd-merge-diagonals-simd-uint8.Tpo .deps/gsnapl_nosimd-merge-diagonals-simd-uint8.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-merge-uint4.o -MD -MP -MF .deps/gsnapl_nosimd-merge-uint4.Tpo -c -o gsnapl_nosimd-merge-uint4.o `test -f 'merge-uint4.c' || echo './'`merge-uint4.c mv -f .deps/gsnapl_nosimd-merge-uint4.Tpo .deps/gsnapl_nosimd-merge-uint4.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-merge-diagonals-simd-uint4.o -MD -MP -MF .deps/gsnapl_nosimd-merge-diagonals-simd-uint4.Tpo -c -o gsnapl_nosimd-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo './'`merge-diagonals-simd-uint4.c mv -f .deps/gsnapl_nosimd-merge-diagonals-heap.Tpo .deps/gsnapl_nosimd-merge-diagonals-heap.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-indexdb.o -MD -MP -MF .deps/gsnapl_nosimd-indexdb.Tpo -c -o gsnapl_nosimd-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c mv -f .deps/gsnapl_nosimd-bitpack64-readtwo.Tpo .deps/gsnapl_nosimd-bitpack64-readtwo.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-regiondb.o -MD -MP -MF .deps/gsnapl_nosimd-regiondb.Tpo -c -o gsnapl_nosimd-regiondb.o `test -f 'regiondb.c' || echo './'`regiondb.c mv -f .deps/gsnapl_nosimd-merge-diagonals-simd-uint4.Tpo .deps/gsnapl_nosimd-merge-diagonals-simd-uint4.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-oligo.o -MD -MP -MF .deps/gsnapl_nosimd-oligo.Tpo -c -o gsnapl_nosimd-oligo.o `test -f 'oligo.c' || echo './'`oligo.c mv -f .deps/gsnap_nosimd-gsnap.Tpo .deps/gsnap_nosimd-gsnap.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-chrnum.o -MD -MP -MF .deps/gsnapl_nosimd-chrnum.Tpo -c -o gsnapl_nosimd-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c mv -f .deps/gsnapl_nosimd-chrnum.Tpo .deps/gsnapl_nosimd-chrnum.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-maxent_hr.o -MD -MP -MF .deps/gsnapl_nosimd-maxent_hr.Tpo -c -o gsnapl_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c mv -f .deps/gsnapl_nosimd-bitpack64-read.Tpo .deps/gsnapl_nosimd-bitpack64-read.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-mdprint.o -MD -MP -MF .deps/gsnapl_nosimd-mdprint.Tpo -c -o gsnapl_nosimd-mdprint.o `test -f 'mdprint.c' || echo './'`mdprint.c mv -f .deps/gsnap_nosimd-kmer-search.Tpo .deps/gsnap_nosimd-kmer-search.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-cigar.o -MD -MP -MF .deps/gsnapl_nosimd-cigar.Tpo -c -o gsnapl_nosimd-cigar.o `test -f 'cigar.c' || echo './'`cigar.c mv -f .deps/gsnapl_nosimd-oligo.Tpo .deps/gsnapl_nosimd-oligo.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-samprint.o -MD -MP -MF .deps/gsnapl_nosimd-samprint.Tpo -c -o gsnapl_nosimd-samprint.o `test -f 'samprint.c' || echo './'`samprint.c mv -f .deps/gsnapl_nosimd-indexdb.Tpo .deps/gsnapl_nosimd-indexdb.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-mapq.o -MD -MP -MF .deps/gsnapl_nosimd-mapq.Tpo -c -o gsnapl_nosimd-mapq.o `test -f 'mapq.c' || echo './'`mapq.c mv -f .deps/gsnapl_nosimd-mapq.Tpo .deps/gsnapl_nosimd-mapq.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-fopen.o -MD -MP -MF .deps/gsnapl_nosimd-fopen.Tpo -c -o gsnapl_nosimd-fopen.o `test -f 'fopen.c' || echo './'`fopen.c mv -f .deps/gsnapl_nosimd-fopen.Tpo .deps/gsnapl_nosimd-fopen.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-shortread.o -MD -MP -MF .deps/gsnapl_nosimd-shortread.Tpo -c -o gsnapl_nosimd-shortread.o `test -f 'shortread.c' || echo './'`shortread.c mv -f .deps/gsnapl_nosimd-mdprint.Tpo .deps/gsnapl_nosimd-mdprint.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-substring.o -MD -MP -MF .deps/gsnapl_nosimd-substring.Tpo -c -o gsnapl_nosimd-substring.o `test -f 'substring.c' || echo './'`substring.c mv -f .deps/gsnapl_nosimd-genome.Tpo .deps/gsnapl_nosimd-genome.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-junction.o -MD -MP -MF .deps/gsnapl_nosimd-junction.Tpo -c -o gsnapl_nosimd-junction.o `test -f 'junction.c' || echo './'`junction.c mv -f .deps/gsnapl_nosimd-genome_sites.Tpo .deps/gsnapl_nosimd-genome_sites.Po mv -f .deps/gsnapl_nosimd-regiondb.Tpo .deps/gsnapl_nosimd-regiondb.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-transcript.o -MD -MP -MF .deps/gsnapl_nosimd-transcript.Tpo -c -o gsnapl_nosimd-transcript.o `test -f 'transcript.c' || echo './'`transcript.c cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-method.o -MD -MP -MF .deps/gsnapl_nosimd-method.Tpo -c -o gsnapl_nosimd-method.o `test -f 'method.c' || echo './'`method.c mv -f .deps/gsnapl_nosimd-method.Tpo .deps/gsnapl_nosimd-method.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-stage3hr.o -MD -MP -MF .deps/gsnapl_nosimd-stage3hr.Tpo -c -o gsnapl_nosimd-stage3hr.o `test -f 'stage3hr.c' || echo './'`stage3hr.c mv -f .deps/gsnapl_nosimd-genome128_hr.Tpo .deps/gsnapl_nosimd-genome128_hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-ladder.o -MD -MP -MF .deps/gsnapl_nosimd-ladder.Tpo -c -o gsnapl_nosimd-ladder.o `test -f 'ladder.c' || echo './'`ladder.c mv -f .deps/gsnapl_nosimd-junction.Tpo .deps/gsnapl_nosimd-junction.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-concordance.o -MD -MP -MF .deps/gsnapl_nosimd-concordance.Tpo -c -o gsnapl_nosimd-concordance.o `test -f 'concordance.c' || echo './'`concordance.c mv -f .deps/gsnapl_nosimd-cigar.Tpo .deps/gsnapl_nosimd-cigar.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-simplepair.o -MD -MP -MF .deps/gsnapl_nosimd-simplepair.Tpo -c -o gsnapl_nosimd-simplepair.o `test -f 'simplepair.c' || echo './'`simplepair.c mv -f .deps/gsnapl_nosimd-transcript.Tpo .deps/gsnapl_nosimd-transcript.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-maxent.o -MD -MP -MF .deps/gsnapl_nosimd-maxent.Tpo -c -o gsnapl_nosimd-maxent.o `test -f 'maxent.c' || echo './'`maxent.c mv -f .deps/gsnapl_nosimd-samprint.Tpo .deps/gsnapl_nosimd-samprint.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-orderstat.o -MD -MP -MF .deps/gsnapl_nosimd-orderstat.Tpo -c -o gsnapl_nosimd-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c mv -f .deps/gsnapl_nosimd-ladder.Tpo .deps/gsnapl_nosimd-ladder.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-intlistpool.o -MD -MP -MF .deps/gsnapl_nosimd-intlistpool.Tpo -c -o gsnapl_nosimd-intlistpool.o `test -f 'intlistpool.c' || echo './'`intlistpool.c mv -f .deps/gsnapl_nosimd-intlistpool.Tpo .deps/gsnapl_nosimd-intlistpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-uint8listpool.o -MD -MP -MF .deps/gsnapl_nosimd-uint8listpool.Tpo -c -o gsnapl_nosimd-uint8listpool.o `test -f 'uint8listpool.c' || echo './'`uint8listpool.c mv -f .deps/gsnapl_nosimd-uint8listpool.Tpo .deps/gsnapl_nosimd-uint8listpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-listpool.o -MD -MP -MF .deps/gsnapl_nosimd-listpool.Tpo -c -o gsnapl_nosimd-listpool.o `test -f 'listpool.c' || echo './'`listpool.c mv -f .deps/gsnapl_nosimd-orderstat.Tpo .deps/gsnapl_nosimd-orderstat.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-hitlistpool.o -MD -MP -MF .deps/gsnapl_nosimd-hitlistpool.Tpo -c -o gsnapl_nosimd-hitlistpool.o `test -f 'hitlistpool.c' || echo './'`hitlistpool.c mv -f .deps/gsnapl_nosimd-concordance.Tpo .deps/gsnapl_nosimd-concordance.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-intron.o -MD -MP -MF .deps/gsnapl_nosimd-intron.Tpo -c -o gsnapl_nosimd-intron.o `test -f 'intron.c' || echo './'`intron.c mv -f .deps/gsnapl_nosimd-listpool.Tpo .deps/gsnapl_nosimd-listpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-gbuffer.o -MD -MP -MF .deps/gsnapl_nosimd-gbuffer.Tpo -c -o gsnapl_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c mv -f .deps/gsnapl_nosimd-hitlistpool.Tpo .deps/gsnapl_nosimd-hitlistpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-knownsplicing.o -MD -MP -MF .deps/gsnapl_nosimd-knownsplicing.Tpo -c -o gsnapl_nosimd-knownsplicing.o `test -f 'knownsplicing.c' || echo './'`knownsplicing.c mv -f .deps/gsnapl_nosimd-gbuffer.Tpo .deps/gsnapl_nosimd-gbuffer.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-splice.o -MD -MP -MF .deps/gsnapl_nosimd-splice.Tpo -c -o gsnapl_nosimd-splice.o `test -f 'splice.c' || echo './'`splice.c mv -f .deps/gsnapl_nosimd-intron.Tpo .deps/gsnapl_nosimd-intron.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-indel.o -MD -MP -MF .deps/gsnapl_nosimd-indel.Tpo -c -o gsnapl_nosimd-indel.o `test -f 'indel.c' || echo './'`indel.c mv -f .deps/gsnapl_nosimd-simplepair.Tpo .deps/gsnapl_nosimd-simplepair.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-bitpack64-access.o -MD -MP -MF .deps/gsnapl_nosimd-bitpack64-access.Tpo -c -o gsnapl_nosimd-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c mv -f .deps/gsnapl_nosimd-knownsplicing.Tpo .deps/gsnapl_nosimd-knownsplicing.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-univdiag.o -MD -MP -MF .deps/gsnapl_nosimd-univdiag.Tpo -c -o gsnapl_nosimd-univdiag.o `test -f 'univdiag.c' || echo './'`univdiag.c mv -f .deps/gsnapl_nosimd-iit-read.Tpo .deps/gsnapl_nosimd-iit-read.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-univdiagpool.o -MD -MP -MF .deps/gsnapl_nosimd-univdiagpool.Tpo -c -o gsnapl_nosimd-univdiagpool.o `test -f 'univdiagpool.c' || echo './'`univdiagpool.c mv -f .deps/gsnapl_nosimd-univdiag.Tpo .deps/gsnapl_nosimd-univdiag.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-sedgesort.o -MD -MP -MF .deps/gsnapl_nosimd-sedgesort.Tpo -c -o gsnapl_nosimd-sedgesort.o `test -f 'sedgesort.c' || echo './'`sedgesort.c mv -f .deps/gsnapl_nosimd-univdiagpool.Tpo .deps/gsnapl_nosimd-univdiagpool.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-intersect.o -MD -MP -MF .deps/gsnapl_nosimd-intersect.Tpo -c -o gsnapl_nosimd-intersect.o `test -f 'intersect.c' || echo './'`intersect.c mv -f .deps/gsnapl_nosimd-indel.Tpo .deps/gsnapl_nosimd-indel.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-intersect-large.o -MD -MP -MF .deps/gsnapl_nosimd-intersect-large.Tpo -c -o gsnapl_nosimd-intersect-large.o `test -f 'intersect-large.c' || echo './'`intersect-large.c mv -f .deps/gsnapl_nosimd-shortread.Tpo .deps/gsnapl_nosimd-shortread.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-kmer-search.o -MD -MP -MF .deps/gsnapl_nosimd-kmer-search.Tpo -c -o gsnapl_nosimd-kmer-search.o `test -f 'kmer-search.c' || echo './'`kmer-search.c mv -f .deps/gsnapl_nosimd-substring.Tpo .deps/gsnapl_nosimd-substring.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-path-solve.o -MD -MP -MF .deps/gsnapl_nosimd-path-solve.Tpo -c -o gsnapl_nosimd-path-solve.o `test -f 'path-solve.c' || echo './'`path-solve.c mv -f .deps/gsnapl_nosimd-sedgesort.Tpo .deps/gsnapl_nosimd-sedgesort.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-extension-search.o -MD -MP -MF .deps/gsnapl_nosimd-extension-search.Tpo -c -o gsnapl_nosimd-extension-search.o `test -f 'extension-search.c' || echo './'`extension-search.c mv -f .deps/gsnapl_nosimd-intersect.Tpo .deps/gsnapl_nosimd-intersect.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-segment-search.o -MD -MP -MF .deps/gsnapl_nosimd-segment-search.Tpo -c -o gsnapl_nosimd-segment-search.o `test -f 'segment-search.c' || echo './'`segment-search.c mv -f .deps/gsnapl_nosimd-intersect-large.Tpo .deps/gsnapl_nosimd-intersect-large.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-terminal.o -MD -MP -MF .deps/gsnapl_nosimd-terminal.Tpo -c -o gsnapl_nosimd-terminal.o `test -f 'terminal.c' || echo './'`terminal.c mv -f .deps/gsnapl_nosimd-maxent.Tpo .deps/gsnapl_nosimd-maxent.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-distant-rna.o -MD -MP -MF .deps/gsnapl_nosimd-distant-rna.Tpo -c -o gsnapl_nosimd-distant-rna.o `test -f 'distant-rna.c' || echo './'`distant-rna.c mv -f .deps/gsnapl_nosimd-bitpack64-access.Tpo .deps/gsnapl_nosimd-bitpack64-access.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-distant-dna.o -MD -MP -MF .deps/gsnapl_nosimd-distant-dna.Tpo -c -o gsnapl_nosimd-distant-dna.o `test -f 'distant-dna.c' || echo './'`distant-dna.c mv -f .deps/gsnapl_nosimd-maxent_hr.Tpo .deps/gsnapl_nosimd-maxent_hr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-uint8table_rh.o -MD -MP -MF .deps/gsnapl_nosimd-uint8table_rh.Tpo -c -o gsnapl_nosimd-uint8table_rh.o `test -f 'uint8table_rh.c' || echo './'`uint8table_rh.c mv -f .deps/gsnapl_nosimd-terminal.Tpo .deps/gsnapl_nosimd-terminal.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-stage1hr.o -MD -MP -MF .deps/gsnapl_nosimd-stage1hr.Tpo -c -o gsnapl_nosimd-stage1hr.o `test -f 'stage1hr.c' || echo './'`stage1hr.c mv -f .deps/gsnapl_nosimd-extension-search.Tpo .deps/gsnapl_nosimd-extension-search.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-request.o -MD -MP -MF .deps/gsnapl_nosimd-request.Tpo -c -o gsnapl_nosimd-request.o `test -f 'request.c' || echo './'`request.c mv -f .deps/gsnapl_nosimd-request.Tpo .deps/gsnapl_nosimd-request.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-resulthr.o -MD -MP -MF .deps/gsnapl_nosimd-resulthr.Tpo -c -o gsnapl_nosimd-resulthr.o `test -f 'resulthr.c' || echo './'`resulthr.c mv -f .deps/gsnapl_nosimd-uint8table_rh.Tpo .deps/gsnapl_nosimd-uint8table_rh.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-output.o -MD -MP -MF .deps/gsnapl_nosimd-output.Tpo -c -o gsnapl_nosimd-output.o `test -f 'output.c' || echo './'`output.c mv -f .deps/gsnapl_nosimd-segment-search.Tpo .deps/gsnapl_nosimd-segment-search.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-inbuffer.o -MD -MP -MF .deps/gsnapl_nosimd-inbuffer.Tpo -c -o gsnapl_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c mv -f .deps/gsnapl_nosimd-resulthr.Tpo .deps/gsnapl_nosimd-resulthr.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-samheader.o -MD -MP -MF .deps/gsnapl_nosimd-samheader.Tpo -c -o gsnapl_nosimd-samheader.o `test -f 'samheader.c' || echo './'`samheader.c mv -f .deps/gsnapl_nosimd-distant-dna.Tpo .deps/gsnapl_nosimd-distant-dna.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-outbuffer.o -MD -MP -MF .deps/gsnapl_nosimd-outbuffer.Tpo -c -o gsnapl_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c mv -f .deps/gsnapl_nosimd-splice.Tpo .deps/gsnapl_nosimd-splice.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-datadir.o -MD -MP -MF .deps/gsnapl_nosimd-datadir.Tpo -c -o gsnapl_nosimd-datadir.o `test -f 'datadir.c' || echo './'`datadir.c mv -f .deps/gsnapl_nosimd-samheader.Tpo .deps/gsnapl_nosimd-samheader.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-parserange.o -MD -MP -MF .deps/gsnapl_nosimd-parserange.Tpo -c -o gsnapl_nosimd-parserange.o `test -f 'parserange.c' || echo './'`parserange.c mv -f .deps/gsnapl_nosimd-inbuffer.Tpo .deps/gsnapl_nosimd-inbuffer.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-getline.o -MD -MP -MF .deps/gsnapl_nosimd-getline.Tpo -c -o gsnapl_nosimd-getline.o `test -f 'getline.c' || echo './'`getline.c mv -f .deps/gsnapl_nosimd-getline.Tpo .deps/gsnapl_nosimd-getline.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-getopt.o -MD -MP -MF .deps/gsnapl_nosimd-getopt.Tpo -c -o gsnapl_nosimd-getopt.o `test -f 'getopt.c' || echo './'`getopt.c mv -f .deps/gsnapl_nosimd-output.Tpo .deps/gsnapl_nosimd-output.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-getopt1.o -MD -MP -MF .deps/gsnapl_nosimd-getopt1.Tpo -c -o gsnapl_nosimd-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c mv -f .deps/gsnapl_nosimd-getopt1.Tpo .deps/gsnapl_nosimd-getopt1.Po cc -DHAVE_CONFIG_H -I. -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -MT gsnapl_nosimd-gsnap.o -MD -MP -MF .deps/gsnapl_nosimd-gsnap.Tpo -c -o gsnapl_nosimd-gsnap.o `test -f 'gsnap.c' || echo './'`gsnap.c mv -f .deps/gsnapl_nosimd-datadir.Tpo .deps/gsnapl_nosimd-datadir.Po cc -DMAIN=1 -pipe -fcommon -O2 -fno-strict-aliasing -o cpuid cpuid-cpuid.o -lm cc -pipe -fcommon -O2 -fno-strict-aliasing -o gmap gmap-cpuid.o gmap-gmap_select.o -lm cc -pipe -fcommon -O2 -fno-strict-aliasing -o gmapl gmapl-cpuid.o gmapl-gmapl_select.o -lm cc -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -o get-genome get_genome-except.o get_genome-assert.o get_genome-mem.o get_genome-intlist.o get_genome-list.o get_genome-littleendian.o get_genome-bigendian.o get_genome-univinterval.o get_genome-interval.o get_genome-uintlist.o get_genome-stopwatch.o get_genome-semaphore.o get_genome-access.o get_genome-filestring.o get_genome-iit-read-univ.o get_genome-iit-read.o get_genome-md5.o get_genome-bzip2.o get_genome-fopen.o get_genome-sequence.o get_genome-genome.o get_genome-genomicpos.o get_genome-chrom.o get_genome-chrnum.o get_genome-datadir.o get_genome-parserange.o get_genome-getline.o get_genome-getopt.o get_genome-getopt1.o get_genome-get-genome.o -lz -lbz2 -lm mv -f .deps/gsnapl_nosimd-outbuffer.Tpo .deps/gsnapl_nosimd-outbuffer.Po cc -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -o gmapindex gmapindex-except.o gmapindex-assert.o gmapindex-mem.o gmapindex-intlist.o gmapindex-list.o gmapindex-littleendian.o gmapindex-bigendian.o gmapindex-univinterval.o gmapindex-interval.o gmapindex-uintlist.o gmapindex-stopwatch.o gmapindex-semaphore.o gmapindex-access.o gmapindex-filestring.o gmapindex-iit-read-univ.o gmapindex-iit-write-univ.o gmapindex-iit-read.o gmapindex-md5.o gmapindex-bzip2.o gmapindex-fopen.o gmapindex-sequence.o gmapindex-genome.o gmapindex-genomicpos.o gmapindex-compress-write.o gmapindex-genome-write.o gmapindex-compress.o gmapindex-popcount.o gmapindex-genome128_hr.o gmapindex-genome128_consec.o gmapindex-bitpack64-read.o gmapindex-bitpack64-readtwo.o gmapindex-bitpack64-access.o gmapindex-bitpack64-incr.o gmapindex-bitpack64-write.o gmapindex-indexdb.o gmapindex-indexdb-write.o gmapindex-regiondb.o gmapindex-regiondb-write.o gmapindex-table.o gmapindex-tableuint.o gmapindex-tableuint8.o gmapindex-tableint.o gmapindex-chrom.o gmapindex-segmentpos.o gmapindex-uint8list.o gmapindex-parserange.o gmapindex-getline.o gmapindex-gmapindex.o -lz -lbz2 -lm mv -f .deps/gsnapl_nosimd-parserange.Tpo .deps/gsnapl_nosimd-parserange.Po cc -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -o indexdb_cat indexdb_cat-except.o indexdb_cat-assert.o indexdb_cat-mem.o indexdb_cat-littleendian.o indexdb_cat-bigendian.o indexdb_cat-genomicpos.o indexdb_cat-stopwatch.o indexdb_cat-semaphore.o indexdb_cat-access.o indexdb_cat-univinterval.o indexdb_cat-interval.o indexdb_cat-uintlist.o indexdb_cat-intlist.o indexdb_cat-list.o indexdb_cat-filestring.o indexdb_cat-iit-read-univ.o indexdb_cat-iit-read.o indexdb_cat-bitpack64-read.o indexdb_cat-bitpack64-readtwo.o indexdb_cat-bitpack64-access.o indexdb_cat-bitpack64-incr.o indexdb_cat-bitpack64-write.o indexdb_cat-indexdb.o indexdb_cat-indexdb-write.o indexdb_cat-compress-write.o indexdb_cat-bzip2.o indexdb_cat-fopen.o indexdb_cat-datadir.o indexdb_cat-parserange.o indexdb_cat-getline.o indexdb_cat-getopt.o indexdb_cat-getopt1.o indexdb_cat-indexdb-cat.o -lz -lbz2 -lm mv -f .deps/gsnapl_nosimd-getopt.Tpo .deps/gsnapl_nosimd-getopt.Po cc -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -o iit_store iit_store-except.o iit_store-assert.o iit_store-mem.o iit_store-intlist.o iit_store-list.o iit_store-littleendian.o iit_store-bigendian.o iit_store-univinterval.o iit_store-interval.o iit_store-uintlist.o iit_store-stopwatch.o iit_store-semaphore.o iit_store-access.o iit_store-doublelist.o iit_store-iit-write-univ.o iit_store-iit-write.o iit_store-tableint.o iit_store-table.o iit_store-chrom.o iit_store-bzip2.o iit_store-getline.o iit_store-getopt.o iit_store-getopt1.o iit_store-iit_store.o -lz -lbz2 -lm cc -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -o iit_get iit_get-except.o iit_get-assert.o iit_get-mem.o iit_get-intlist.o iit_get-list.o iit_get-littleendian.o iit_get-bigendian.o iit_get-univinterval.o iit_get-interval.o iit_get-uintlist.o iit_get-stopwatch.o iit_get-semaphore.o iit_get-access.o iit_get-filestring.o iit_get-iit-read-univ.o iit_get-iit-read.o iit_get-parserange.o iit_get-bzip2.o iit_get-getline.o iit_get-getopt.o iit_get-getopt1.o iit_get-iit_get.o -lz -lbz2 -lm cc -pthread -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -o iit_dump iit_dump-except.o iit_dump-assert.o iit_dump-mem.o iit_dump-littleendian.o iit_dump-bigendian.o iit_dump-intlist.o iit_dump-list.o iit_dump-univinterval.o iit_dump-interval.o iit_dump-uintlist.o iit_dump-stopwatch.o iit_dump-semaphore.o iit_dump-access.o iit_dump-filestring.o iit_dump-iit-read-univ.o iit_dump-iit-read.o iit_dump-parserange.o iit_dump-getopt.o iit_dump-getopt1.o iit_dump-iit_dump.o -lm cc -pipe -fcommon -O2 -fno-strict-aliasing -o gsnap gsnap-cpuid.o gsnap-gsnap_select.o -lm cc -pipe -fcommon -O2 -fno-strict-aliasing -o gsnapl gsnapl-cpuid.o gsnapl-gsnapl_select.o -lm cc -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -o snpindex snpindex-except.o snpindex-assert.o snpindex-mem.o snpindex-intlist.o snpindex-list.o snpindex-littleendian.o snpindex-bigendian.o snpindex-univinterval.o snpindex-interval.o snpindex-uintlist.o snpindex-stopwatch.o snpindex-semaphore.o snpindex-access.o snpindex-filestring.o snpindex-iit-read-univ.o snpindex-iit-read.o snpindex-genomicpos.o snpindex-compress.o snpindex-compress-write.o snpindex-popcount.o snpindex-genome128_hr.o snpindex-genome128_consec.o snpindex-bitpack64-read.o snpindex-bitpack64-readtwo.o snpindex-bitpack64-access.o snpindex-bitpack64-incr.o snpindex-bitpack64-write.o snpindex-indexdb.o snpindex-indexdb-write.o snpindex-chrom.o snpindex-md5.o snpindex-bzip2.o snpindex-fopen.o snpindex-sequence.o snpindex-genome.o snpindex-datadir.o snpindex-parserange.o snpindex-getline.o snpindex-getopt.o snpindex-getopt1.o snpindex-snpindex.o -lz -lbz2 -lm cc -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -o cmetindex cmetindex-except.o cmetindex-assert.o cmetindex-mem.o cmetindex-littleendian.o cmetindex-bigendian.o cmetindex-genomicpos.o cmetindex-stopwatch.o cmetindex-semaphore.o cmetindex-access.o cmetindex-univinterval.o cmetindex-interval.o cmetindex-filestring.o cmetindex-iit-read-univ.o cmetindex-iit-read.o cmetindex-compress.o cmetindex-compress-write.o cmetindex-popcount.o cmetindex-genome128_hr.o cmetindex-genome128_consec.o cmetindex-bitpack64-read.o cmetindex-bitpack64-readtwo.o cmetindex-bitpack64-access.o cmetindex-bitpack64-incr.o cmetindex-bitpack64-write.o cmetindex-indexdb.o cmetindex-indexdb-write.o cmetindex-regiondb-write.o cmetindex-cmet.o cmetindex-md5.o cmetindex-bzip2.o cmetindex-fopen.o cmetindex-sequence.o cmetindex-genome.o cmetindex-uintlist.o cmetindex-intlist.o cmetindex-uint8list.o cmetindex-list.o cmetindex-datadir.o cmetindex-parserange.o cmetindex-getline.o cmetindex-getopt.o cmetindex-getopt1.o cmetindex-cmetindex.o -lz -lbz2 -lm cc -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -o atoiindex atoiindex-except.o atoiindex-assert.o atoiindex-mem.o atoiindex-littleendian.o atoiindex-bigendian.o atoiindex-genomicpos.o atoiindex-stopwatch.o atoiindex-semaphore.o atoiindex-access.o atoiindex-univinterval.o atoiindex-interval.o atoiindex-filestring.o atoiindex-iit-read-univ.o atoiindex-iit-read.o atoiindex-compress.o atoiindex-compress-write.o atoiindex-popcount.o atoiindex-genome128_hr.o atoiindex-genome128_consec.o atoiindex-bitpack64-read.o atoiindex-bitpack64-readtwo.o atoiindex-bitpack64-access.o atoiindex-bitpack64-incr.o atoiindex-bitpack64-write.o atoiindex-indexdb.o atoiindex-indexdb-write.o atoiindex-regiondb-write.o atoiindex-atoi.o atoiindex-md5.o atoiindex-bzip2.o atoiindex-fopen.o atoiindex-sequence.o atoiindex-genome.o atoiindex-uintlist.o atoiindex-intlist.o atoiindex-uint8list.o atoiindex-list.o atoiindex-datadir.o atoiindex-parserange.o atoiindex-getline.o atoiindex-getopt.o atoiindex-getopt1.o atoiindex-atoiindex.o -lz -lbz2 -lm cc -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -o trindex trindex-except.o trindex-assert.o trindex-mem.o trindex-littleendian.o trindex-bigendian.o trindex-genomicpos.o trindex-stopwatch.o trindex-semaphore.o trindex-access.o trindex-interval.o trindex-filestring.o trindex-iit-read.o trindex-parserange.o trindex-univinterval.o trindex-iit-read-univ.o trindex-bitpack64-access.o trindex-bitpack64-write.o trindex-uintlist.o trindex-intlist.o trindex-list.o trindex-datadir.o trindex-bzip2.o trindex-getline.o trindex-getopt.o trindex-getopt1.o trindex-trindex.o -lz -lbz2 -lm cc -pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -pipe -fcommon -O2 -fno-strict-aliasing -o sam_sort sam_sort-except.o sam_sort-assert.o sam_sort-mem.o sam_sort-littleendian.o sam_sort-bigendian.o sam_sort-intlist.o sam_sort-list.o sam_sort-stopwatch.o sam_sort-semaphore.o sam_sort-access.o sam_sort-univinterval.o sam_sort-interval.o sam_sort-uintlist.o sam_sort-filestring.o sam_sort-parserange.o sam_sort-iit-read-univ.o sam_sort-iit-read.o sam_sort-samheader.o sam_sort-samread.o sam_sort-bzip2.o sam_sort-getline.o sam_sort-datadir.o sam_sort-getopt.o sam_sort-getopt1.o sam_sort-sam_sort.o -lz -lbz2 -lm cc -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -o gmap.nosimd gmap_nosimd-except.o gmap_nosimd-assert.o gmap_nosimd-mem.o gmap_nosimd-intlist.o gmap_nosimd-uintlist.o gmap_nosimd-list.o gmap_nosimd-littleendian.o gmap_nosimd-bigendian.o gmap_nosimd-univinterval.o gmap_nosimd-interval.o gmap_nosimd-stopwatch.o gmap_nosimd-semaphore.o gmap_nosimd-access.o gmap_nosimd-filestring.o gmap_nosimd-iit-read-univ.o gmap_nosimd-iit-read.o gmap_nosimd-md5.o gmap_nosimd-bzip2.o gmap_nosimd-fopen.o gmap_nosimd-sequence.o gmap_nosimd-reader.o gmap_nosimd-genomicpos.o gmap_nosimd-compress.o gmap_nosimd-compress-write.o gmap_nosimd-gbuffer.o gmap_nosimd-genome.o gmap_nosimd-popcount.o gmap_nosimd-genome_sites.o gmap_nosimd-genome-write.o gmap_nosimd-bitpack64-read.o gmap_nosimd-bitpack64-readtwo.o gmap_nosimd-indexdb.o gmap_nosimd-oligo.o gmap_nosimd-block.o gmap_nosimd-chrom.o gmap_nosimd-segmentpos.o gmap_nosimd-chrnum.o gmap_nosimd-uinttable_rh.o gmap_nosimd-gregion.o gmap_nosimd-match.o gmap_nosimd-matchpool.o gmap_nosimd-diagnostic.o gmap_nosimd-stage1.o gmap_nosimd-diag.o gmap_nosimd-diagpool.o gmap_nosimd-cmet.o gmap_nosimd-atoi.o gmap_nosimd-orderstat.o gmap_nosimd-oligoindex_hr.o gmap_nosimd-transcript.o gmap_nosimd-intron.o gmap_nosimd-maxent.o gmap_nosimd-maxent_hr.o gmap_nosimd-pair.o gmap_nosimd-pairpool.o gmap_nosimd-cellpool.o gmap_nosimd-stage2.o gmap_nosimd-doublelist.o gmap_nosimd-smooth.o gmap_nosimd-splicestringpool.o gmap_nosimd-splicetrie_build.o gmap_nosimd-splicetrie.o gmap_nosimd-boyer-moore.o gmap_nosimd-dynprog.o gmap_nosimd-dynprog_simd.o gmap_nosimd-dynprog_single.o gmap_nosimd-dynprog_genome.o gmap_nosimd-dynprog_cdna.o gmap_nosimd-dynprog_end.o gmap_nosimd-translation.o gmap_nosimd-pbinom.o gmap_nosimd-changepoint.o gmap_nosimd-stage3.o gmap_nosimd-request.o gmap_nosimd-result.o gmap_nosimd-output.o gmap_nosimd-inbuffer.o gmap_nosimd-samheader.o gmap_nosimd-outbuffer.o gmap_nosimd-chimera.o gmap_nosimd-datadir.o gmap_nosimd-parserange.o gmap_nosimd-getline.o gmap_nosimd-getopt.o gmap_nosimd-getopt1.o gmap_nosimd-gmap.o -lz -lbz2 -lm cc -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -o gmapl.nosimd gmapl_nosimd-except.o gmapl_nosimd-assert.o gmapl_nosimd-mem.o gmapl_nosimd-intlist.o gmapl_nosimd-uintlist.o gmapl_nosimd-uint8list.o gmapl_nosimd-list.o gmapl_nosimd-littleendian.o gmapl_nosimd-bigendian.o gmapl_nosimd-univinterval.o gmapl_nosimd-interval.o gmapl_nosimd-stopwatch.o gmapl_nosimd-semaphore.o gmapl_nosimd-access.o gmapl_nosimd-filestring.o gmapl_nosimd-iit-read-univ.o gmapl_nosimd-iit-read.o gmapl_nosimd-md5.o gmapl_nosimd-bzip2.o gmapl_nosimd-fopen.o gmapl_nosimd-sequence.o gmapl_nosimd-reader.o gmapl_nosimd-genomicpos.o gmapl_nosimd-compress.o gmapl_nosimd-compress-write.o gmapl_nosimd-gbuffer.o gmapl_nosimd-genome.o gmapl_nosimd-popcount.o gmapl_nosimd-genome_sites.o gmapl_nosimd-genome-write.o gmapl_nosimd-bitpack64-read.o gmapl_nosimd-bitpack64-readtwo.o gmapl_nosimd-indexdb.o gmapl_nosimd-oligo.o gmapl_nosimd-block.o gmapl_nosimd-chrom.o gmapl_nosimd-segmentpos.o gmapl_nosimd-chrnum.o gmapl_nosimd-uinttable_rh.o gmapl_nosimd-gregion.o gmapl_nosimd-match.o gmapl_nosimd-matchpool.o gmapl_nosimd-diagnostic.o gmapl_nosimd-stage1.o gmapl_nosimd-diag.o gmapl_nosimd-diagpool.o gmapl_nosimd-cmet.o gmapl_nosimd-atoi.o gmapl_nosimd-orderstat.o gmapl_nosimd-oligoindex_hr.o gmapl_nosimd-transcript.o gmapl_nosimd-intron.o gmapl_nosimd-maxent.o gmapl_nosimd-maxent_hr.o gmapl_nosimd-pair.o gmapl_nosimd-pairpool.o gmapl_nosimd-cellpool.o gmapl_nosimd-stage2.o gmapl_nosimd-doublelist.o gmapl_nosimd-smooth.o gmapl_nosimd-splicestringpool.o gmapl_nosimd-splicetrie_build.o gmapl_nosimd-splicetrie.o gmapl_nosimd-boyer-moore.o gmapl_nosimd-dynprog.o gmapl_nosimd-dynprog_simd.o gmapl_nosimd-dynprog_single.o gmapl_nosimd-dynprog_genome.o gmapl_nosimd-dynprog_cdna.o gmapl_nosimd-dynprog_end.o gmapl_nosimd-translation.o gmapl_nosimd-pbinom.o gmapl_nosimd-changepoint.o gmapl_nosimd-stage3.o gmapl_nosimd-request.o gmapl_nosimd-result.o gmapl_nosimd-output.o gmapl_nosimd-inbuffer.o gmapl_nosimd-samheader.o gmapl_nosimd-outbuffer.o gmapl_nosimd-chimera.o gmapl_nosimd-datadir.o gmapl_nosimd-parserange.o gmapl_nosimd-getline.o gmapl_nosimd-getopt.o gmapl_nosimd-getopt1.o gmapl_nosimd-gmap.o -lz -lbz2 -lm cc -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -o gsnap.nosimd gsnap_nosimd-except.o gsnap_nosimd-assert.o gsnap_nosimd-mem.o gsnap_nosimd-intlist.o gsnap_nosimd-uintlist.o gsnap_nosimd-list.o gsnap_nosimd-littleendian.o gsnap_nosimd-bigendian.o gsnap_nosimd-univinterval.o gsnap_nosimd-interval.o gsnap_nosimd-stopwatch.o gsnap_nosimd-semaphore.o gsnap_nosimd-access.o gsnap_nosimd-filestring.o gsnap_nosimd-iit-read-univ.o gsnap_nosimd-iit-read.o gsnap_nosimd-bzip2.o gsnap_nosimd-reader.o gsnap_nosimd-genomicpos.o gsnap_nosimd-compress.o gsnap_nosimd-genome.o gsnap_nosimd-transcriptome.o gsnap_nosimd-popcount.o gsnap_nosimd-genome128_hr.o gsnap_nosimd-genome128_consec.o gsnap_nosimd-genome_sites.o gsnap_nosimd-bitpack64-read.o gsnap_nosimd-bitpack64-readtwo.o gsnap_nosimd-merge-uint4.o gsnap_nosimd-merge-diagonals-simd-uint4.o gsnap_nosimd-indexdb.o gsnap_nosimd-regiondb.o gsnap_nosimd-oligo.o gsnap_nosimd-chrnum.o gsnap_nosimd-maxent_hr.o gsnap_nosimd-mdprint.o gsnap_nosimd-cigar.o gsnap_nosimd-samprint.o gsnap_nosimd-mapq.o gsnap_nosimd-fopen.o gsnap_nosimd-shortread.o gsnap_nosimd-substring.o gsnap_nosimd-junction.o gsnap_nosimd-transcript.o gsnap_nosimd-method.o gsnap_nosimd-stage3hr.o gsnap_nosimd-ladder.o gsnap_nosimd-concordance.o gsnap_nosimd-simplepair.o gsnap_nosimd-maxent.o gsnap_nosimd-orderstat.o gsnap_nosimd-intlistpool.o gsnap_nosimd-uintlistpool.o gsnap_nosimd-listpool.o gsnap_nosimd-hitlistpool.o gsnap_nosimd-intron.o gsnap_nosimd-gbuffer.o gsnap_nosimd-knownsplicing.o gsnap_nosimd-splice.o gsnap_nosimd-indel.o gsnap_nosimd-bitpack64-access.o gsnap_nosimd-univdiag.o gsnap_nosimd-univdiagpool.o gsnap_nosimd-sedgesort.o gsnap_nosimd-intersect.o gsnap_nosimd-kmer-search.o gsnap_nosimd-path-solve.o gsnap_nosimd-extension-search.o gsnap_nosimd-segment-search.o gsnap_nosimd-terminal.o gsnap_nosimd-distant-rna.o gsnap_nosimd-distant-dna.o gsnap_nosimd-uint8table_rh.o gsnap_nosimd-uinttable_rh.o gsnap_nosimd-stage1hr.o gsnap_nosimd-request.o gsnap_nosimd-resulthr.o gsnap_nosimd-output.o gsnap_nosimd-inbuffer.o gsnap_nosimd-samheader.o gsnap_nosimd-outbuffer.o gsnap_nosimd-datadir.o gsnap_nosimd-parserange.o gsnap_nosimd-getline.o gsnap_nosimd-getopt.o gsnap_nosimd-getopt1.o gsnap_nosimd-gsnap.o -lz -lbz2 -lm mv -f .deps/gsnapl_nosimd-distant-rna.Tpo .deps/gsnapl_nosimd-distant-rna.Po mv -f .deps/gsnapl_nosimd-stage1hr.Tpo .deps/gsnapl_nosimd-stage1hr.Po mv -f .deps/gsnapl_nosimd-stage3hr.Tpo .deps/gsnapl_nosimd-stage3hr.Po mv -f .deps/gsnapl_nosimd-path-solve.Tpo .deps/gsnapl_nosimd-path-solve.Po mv -f .deps/gsnapl_nosimd-gsnap.Tpo .deps/gsnapl_nosimd-gsnap.Po mv -f .deps/gsnapl_nosimd-kmer-search.Tpo .deps/gsnapl_nosimd-kmer-search.Po cc -pthread -DTARGET=\"x86_64-portbld-dragonfly6.1\" -DGMAPDB=\"/usr/local/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -pipe -fcommon -O2 -fno-strict-aliasing -o gsnapl.nosimd gsnapl_nosimd-except.o gsnapl_nosimd-assert.o gsnapl_nosimd-mem.o gsnapl_nosimd-intlist.o gsnapl_nosimd-uintlist.o gsnapl_nosimd-uint8list.o gsnapl_nosimd-list.o gsnapl_nosimd-littleendian.o gsnapl_nosimd-bigendian.o gsnapl_nosimd-univinterval.o gsnapl_nosimd-interval.o gsnapl_nosimd-stopwatch.o gsnapl_nosimd-semaphore.o gsnapl_nosimd-access.o gsnapl_nosimd-filestring.o gsnapl_nosimd-iit-read-univ.o gsnapl_nosimd-iit-read.o gsnapl_nosimd-bzip2.o gsnapl_nosimd-reader.o gsnapl_nosimd-genomicpos.o gsnapl_nosimd-compress.o gsnapl_nosimd-genome.o gsnapl_nosimd-transcriptome.o gsnapl_nosimd-popcount.o gsnapl_nosimd-genome128_hr.o gsnapl_nosimd-genome128_consec.o gsnapl_nosimd-genome_sites.o gsnapl_nosimd-bitpack64-read.o gsnapl_nosimd-bitpack64-readtwo.o gsnapl_nosimd-merge-diagonals-heap.o gsnapl_nosimd-merge-uint8.o gsnapl_nosimd-merge-diagonals-simd-uint8.o gsnapl_nosimd-merge-uint4.o gsnapl_nosimd-merge-diagonals-simd-uint4.o gsnapl_nosimd-indexdb.o gsnapl_nosimd-regiondb.o gsnapl_nosimd-oligo.o gsnapl_nosimd-chrnum.o gsnapl_nosimd-maxent_hr.o gsnapl_nosimd-mdprint.o gsnapl_nosimd-cigar.o gsnapl_nosimd-samprint.o gsnapl_nosimd-mapq.o gsnapl_nosimd-fopen.o gsnapl_nosimd-shortread.o gsnapl_nosimd-substring.o gsnapl_nosimd-junction.o gsnapl_nosimd-transcript.o gsnapl_nosimd-method.o gsnapl_nosimd-stage3hr.o gsnapl_nosimd-ladder.o gsnapl_nosimd-concordance.o gsnapl_nosimd-simplepair.o gsnapl_nosimd-maxent.o gsnapl_nosimd-orderstat.o gsnapl_nosimd-intlistpool.o gsnapl_nosimd-uint8listpool.o gsnapl_nosimd-listpool.o gsnapl_nosimd-hitlistpool.o gsnapl_nosimd-intron.o gsnapl_nosimd-gbuffer.o gsnapl_nosimd-knownsplicing.o gsnapl_nosimd-splice.o gsnapl_nosimd-indel.o gsnapl_nosimd-bitpack64-access.o gsnapl_nosimd-univdiag.o gsnapl_nosimd-univdiagpool.o gsnapl_nosimd-sedgesort.o gsnapl_nosimd-intersect.o gsnapl_nosimd-intersect-large.o gsnapl_nosimd-kmer-search.o gsnapl_nosimd-path-solve.o gsnapl_nosimd-extension-search.o gsnapl_nosimd-segment-search.o gsnapl_nosimd-terminal.o gsnapl_nosimd-distant-rna.o gsnapl_nosimd-distant-dna.o gsnapl_nosimd-uint8table_rh.o gsnapl_nosimd-stage1hr.o gsnapl_nosimd-request.o gsnapl_nosimd-resulthr.o gsnapl_nosimd-output.o gsnapl_nosimd-inbuffer.o gsnapl_nosimd-samheader.o gsnapl_nosimd-outbuffer.o gsnapl_nosimd-datadir.o gsnapl_nosimd-parserange.o gsnapl_nosimd-getline.o gsnapl_nosimd-getopt.o gsnapl_nosimd-getopt1.o gsnapl_nosimd-gsnap.o -lz -lbz2 -lm gmake[3]: Leaving directory '/construction/biology/gmap/gmap-2020-09-12/src' gmake[2]: Leaving directory '/construction/biology/gmap/gmap-2020-09-12/src' Making all in util gmake[2]: Entering directory '/construction/biology/gmap/gmap-2020-09-12/util' cp gmap_process.pl gmap_process cp gmap_build.pl gmap_build cp gmap_cat.pl gmap_cat cp md_coords.pl md_coords cp fa_coords.pl fa_coords cp psl_splicesites.pl psl_splicesites cp psl_introns.pl psl_introns cp psl_genes.pl psl_genes chmod +x gmap_cat chmod +x md_coords cp ensembl_genes.pl ensembl_genes chmod +x psl_splicesites chmod +x fa_coords chmod +x psl_introns chmod +x psl_genes chmod +x gmap_process cp gtf_splicesites.pl gtf_splicesites chmod +x ensembl_genes cp gtf_introns.pl gtf_introns cp gtf_genes.pl gtf_genes cp gtf_transcript_splicesites.pl gtf_transcript_splicesites cp gff3_splicesites.pl gff3_splicesites chmod +x gtf_splicesites chmod +x gff3_splicesites chmod +x gtf_transcript_splicesites chmod +x gtf_genes chmod +x gtf_introns chmod +x gmap_build cp gff3_introns.pl gff3_introns cp gff3_genes.pl gff3_genes chmod +x gff3_introns cp dbsnp_iit.pl dbsnp_iit cp gvf_iit.pl gvf_iit cp vcf_iit.pl vcf_iit chmod +x gff3_genes chmod +x dbsnp_iit chmod +x gvf_iit chmod +x vcf_iit gmake[2]: Leaving directory '/construction/biology/gmap/gmap-2020-09-12/util' Making all in tests gmake[2]: Entering directory '/construction/biology/gmap/gmap-2020-09-12/tests' gmake[2]: Nothing to be done for 'all'. gmake[2]: Leaving directory '/construction/biology/gmap/gmap-2020-09-12/tests' gmake[2]: Entering directory '/construction/biology/gmap/gmap-2020-09-12' gmake[2]: Nothing to be done for 'all-am'. gmake[2]: Leaving directory '/construction/biology/gmap/gmap-2020-09-12' gmake[1]: Leaving directory '/construction/biology/gmap/gmap-2020-09-12' SUCCEEDED 00:01:13 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> gmap-2020.09.12 depends on package: perl5>=5.32.r0<5.33 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for gmap-2020.09.12 ===> gmap-2020.09.12 depends on package: perl5>=5.32.r0<5.33 - found ===> Generating temporary packing list gmake[1]: Entering directory '/construction/biology/gmap/gmap-2020-09-12' Making install in src gmake[2]: Entering directory '/construction/biology/gmap/gmap-2020-09-12/src' gmake[3]: Entering directory '/construction/biology/gmap/gmap-2020-09-12/src' /bin/mkdir -p '/construction/biology/gmap/stage/usr/local/bin' install -s -m 555 cpuid gmap gmapl get-genome gmapindex indexdb_cat iit_store iit_get iit_dump gsnap gsnapl snpindex cmetindex atoiindex trindex sam_sort gmap.nosimd gmapl.nosimd gsnap.nosimd gsnapl.nosimd '/construction/biology/gmap/stage/usr/local/bin' gmake[3]: Nothing to be done for 'install-data-am'. gmake[3]: Leaving directory '/construction/biology/gmap/gmap-2020-09-12/src' gmake[2]: Leaving directory '/construction/biology/gmap/gmap-2020-09-12/src' Making install in util gmake[2]: Entering directory '/construction/biology/gmap/gmap-2020-09-12/util' gmake[3]: Entering directory '/construction/biology/gmap/gmap-2020-09-12/util' /bin/mkdir -p '/construction/biology/gmap/stage/usr/local/bin' install -m 555 gmap_process gmap_build gmap_cat md_coords fa_coords psl_splicesites psl_introns psl_genes ensembl_genes gtf_splicesites gtf_introns gtf_genes gtf_transcript_splicesites gff3_splicesites gff3_introns gff3_genes dbsnp_iit gvf_iit vcf_iit '/construction/biology/gmap/stage/usr/local/bin' gmake[3]: Nothing to be done for 'install-data-am'. gmake[3]: Leaving directory '/construction/biology/gmap/gmap-2020-09-12/util' gmake[2]: Leaving directory '/construction/biology/gmap/gmap-2020-09-12/util' Making install in tests gmake[2]: Entering directory '/construction/biology/gmap/gmap-2020-09-12/tests' gmake[3]: Entering directory '/construction/biology/gmap/gmap-2020-09-12/tests' gmake[3]: Nothing to be done for 'install-exec-am'. gmake[3]: Nothing to be done for 'install-data-am'. gmake[3]: Leaving directory '/construction/biology/gmap/gmap-2020-09-12/tests' gmake[2]: Leaving directory '/construction/biology/gmap/gmap-2020-09-12/tests' gmake[2]: Entering directory '/construction/biology/gmap/gmap-2020-09-12' gmake[3]: Entering directory '/construction/biology/gmap/gmap-2020-09-12' gmake[3]: Nothing to be done for 'install-exec-am'. gmake[3]: Nothing to be done for 'install-data-am'. gmake[3]: Leaving directory '/construction/biology/gmap/gmap-2020-09-12' gmake[2]: Leaving directory '/construction/biology/gmap/gmap-2020-09-12' gmake[1]: Leaving directory '/construction/biology/gmap/gmap-2020-09-12' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:05 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for gmap-2020.09.12 file sizes/checksums [39]: 0% file sizes/checksums [39]: 100% packing files [39]: 0% packing files [39]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:27 TOTAL TIME 00:02:32