------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 UNAME_r=6.1 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- MAKE=gmake XDG_DATA_HOME=/construction/biology/fastp XDG_CONFIG_HOME=/construction/biology/fastp HOME=/construction/biology/fastp TMPDIR="/tmp" PATH=/construction/biology/fastp/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/biology/fastp XDG_CONFIG_HOME=/construction/biology/fastp HOME=/construction/biology/fastp TMPDIR="/tmp" PATH=/construction/biology/fastp/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/biology/fastp/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- OSREL=6.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/fastp" EXAMPLESDIR="share/examples/fastp" DATADIR="share/fastp" WWWDIR="www/fastp" ETCDIR="etc/fastp" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/fastp DOCSDIR=/usr/local/share/doc/fastp EXAMPLESDIR=/usr/local/share/examples/fastp WWWDIR=/usr/local/www/fastp ETCDIR=/usr/local/etc/fastp SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_SUFX=.txz DEVELOPER=1 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600102 OSVERSION=9999999 OSREL=6.1 _OSRELEASE=6.1-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=10 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gettext-runtime-0.21.txz Installing /packages/All/gmake-4.3_2.txz SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> fastp-0.20.1 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> fastp-0.20.1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by fastp-0.20.1 for building SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> fastp-0.20.1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by fastp-0.20.1 for building => SHA256 Checksum OK for OpenGene-fastp-v0.20.1_GH0.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> fastp-0.20.1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by fastp-0.20.1 for building ===> Extracting for fastp-0.20.1 => SHA256 Checksum OK for OpenGene-fastp-v0.20.1_GH0.tar.gz. Extracted Memory Use: 0.71M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for fastp-0.20.1 ===> Applying ports patches for fastp-0.20.1 from /xports/biology/fastp/files SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> fastp-0.20.1 depends on package: gmake>=4.3 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> fastp-0.20.1 depends on package: gmake>=4.3 - found ===> Configuring for fastp-0.20.1 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for fastp-0.20.1 gmake[1]: Entering directory '/construction/biology/fastp/fastp-0.20.1' c++ -c src/adaptertrimmer.cpp -o obj/adaptertrimmer.o -pipe -O2 -fno-strict-aliasing -std=c++11 -I./inc c++ -c src/basecorrector.cpp -o obj/basecorrector.o -pipe -O2 -fno-strict-aliasing -std=c++11 -I./inc c++ -c src/duplicate.cpp -o obj/duplicate.o -pipe -O2 -fno-strict-aliasing -std=c++11 -I./inc c++ -c src/evaluator.cpp -o obj/evaluator.o -pipe -O2 -fno-strict-aliasing -std=c++11 -I./inc c++ -c src/fastareader.cpp -o obj/fastareader.o -pipe -O2 -fno-strict-aliasing -std=c++11 -I./inc c++ -c src/fastqreader.cpp -o obj/fastqreader.o -pipe -O2 -fno-strict-aliasing -std=c++11 -I./inc c++ -c src/filter.cpp -o obj/filter.o -pipe -O2 -fno-strict-aliasing -std=c++11 -I./inc c++ -c src/filterresult.cpp -o obj/filterresult.o -pipe -O2 -fno-strict-aliasing -std=c++11 -I./inc c++ -c src/htmlreporter.cpp -o obj/htmlreporter.o -pipe -O2 -fno-strict-aliasing -std=c++11 -I./inc c++ -c src/jsonreporter.cpp -o obj/jsonreporter.o -pipe -O2 -fno-strict-aliasing -std=c++11 -I./inc c++ -c src/main.cpp -o obj/main.o -pipe -O2 -fno-strict-aliasing -std=c++11 -I./inc c++ -c src/nucleotidetree.cpp -o obj/nucleotidetree.o -pipe -O2 -fno-strict-aliasing -std=c++11 -I./inc c++ -c src/options.cpp -o obj/options.o -pipe -O2 -fno-strict-aliasing -std=c++11 -I./inc c++ -c src/overlapanalysis.cpp -o obj/overlapanalysis.o -pipe -O2 -fno-strict-aliasing -std=c++11 -I./inc c++ -c src/peprocessor.cpp -o obj/peprocessor.o -pipe -O2 -fno-strict-aliasing -std=c++11 -I./inc c++ -c src/polyx.cpp -o obj/polyx.o -pipe -O2 -fno-strict-aliasing -std=c++11 -I./inc c++ -c src/processor.cpp -o obj/processor.o -pipe -O2 -fno-strict-aliasing -std=c++11 -I./inc c++ -c src/read.cpp -o obj/read.o -pipe -O2 -fno-strict-aliasing -std=c++11 -I./inc c++ -c src/seprocessor.cpp -o obj/seprocessor.o -pipe -O2 -fno-strict-aliasing -std=c++11 -I./inc c++ -c src/sequence.cpp -o obj/sequence.o -pipe -O2 -fno-strict-aliasing -std=c++11 -I./inc c++ -c src/stats.cpp -o obj/stats.o -pipe -O2 -fno-strict-aliasing -std=c++11 -I./inc c++ -c src/threadconfig.cpp -o obj/threadconfig.o -pipe -O2 -fno-strict-aliasing -std=c++11 -I./inc c++ -c src/umiprocessor.cpp -o obj/umiprocessor.o -pipe -O2 -fno-strict-aliasing -std=c++11 -I./inc c++ -c src/unittest.cpp -o obj/unittest.o -pipe -O2 -fno-strict-aliasing -std=c++11 -I./inc c++ -c src/writer.cpp -o obj/writer.o -pipe -O2 -fno-strict-aliasing -std=c++11 -I./inc c++ -c src/writerthread.cpp -o obj/writerthread.o -pipe -O2 -fno-strict-aliasing -std=c++11 -I./inc c++ ./obj/adaptertrimmer.o ./obj/basecorrector.o ./obj/duplicate.o ./obj/evaluator.o ./obj/fastareader.o ./obj/fastqreader.o ./obj/filter.o ./obj/filterresult.o ./obj/htmlreporter.o ./obj/jsonreporter.o ./obj/main.o ./obj/nucleotidetree.o ./obj/options.o ./obj/overlapanalysis.o ./obj/peprocessor.o ./obj/polyx.o ./obj/processor.o ./obj/read.o ./obj/seprocessor.o ./obj/sequence.o ./obj/stats.o ./obj/threadconfig.o ./obj/umiprocessor.o ./obj/unittest.o ./obj/writer.o ./obj/writerthread.o -o fastp -lz -lpthread gmake[1]: Leaving directory '/construction/biology/fastp/fastp-0.20.1' SUCCEEDED 00:00:10 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for fastp-0.20.1 ===> Generating temporary packing list gmake[1]: Entering directory '/construction/biology/fastp/fastp-0.20.1' install fastp /construction/biology/fastp/stage/usr/local/bin/fastp Installed. gmake[1]: Leaving directory '/construction/biology/fastp/fastp-0.20.1' /usr/bin/strip /construction/biology/fastp/stage/usr/local/bin/fastp ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for fastp-0.20.1 file sizes/checksums [1]: 0% file sizes/checksums [1]: 100% packing files [1]: 0% packing files [1]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:01 TOTAL TIME 00:00:14