------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gettext-runtime-0.21.txz Installing /packages/All/gmake-4.3_2.txz SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> cd-hit-4.8.1_1 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> cd-hit-4.8.1_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by cd-hit-4.8.1_1 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> cd-hit-4.8.1_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by cd-hit-4.8.1_1 for building => SHA256 Checksum OK for weizhongli-cdhit-V4.8.1_GH0.tar.gz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> cd-hit-4.8.1_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by cd-hit-4.8.1_1 for building ===> Extracting for cd-hit-4.8.1_1 => SHA256 Checksum OK for weizhongli-cdhit-V4.8.1_GH0.tar.gz. Extracted Memory Use: 1.74M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for cd-hit-4.8.1_1 ===> Applying ports patches for cd-hit-4.8.1_1 from /xports/biology/cd-hit/files SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> cd-hit-4.8.1_1 depends on package: gmake>=4.3 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> cd-hit-4.8.1_1 depends on package: gmake>=4.3 - found ===> Configuring for cd-hit-4.8.1_1 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for cd-hit-4.8.1_1 gmake[1]: Entering directory '/construction/biology/cd-hit/cdhit-4.8.1' gmake[1]: Nothing to be done for 'Makefile'. c++ -fopenmp -DWITH_ZLIB -O2 -pipe -O2 -fno-strict-aliasing cdhit-common.c++ -c c++ -fopenmp -DWITH_ZLIB -O2 -pipe -O2 -fno-strict-aliasing cdhit-utility.c++ -c c++ -fopenmp -DWITH_ZLIB -O2 -pipe -O2 -fno-strict-aliasing cdhit.c++ -c c++ -fopenmp -DWITH_ZLIB -O2 -pipe -O2 -fno-strict-aliasing cdhit-est.c++ -c c++ -fopenmp -DWITH_ZLIB -O2 -pipe -O2 -fno-strict-aliasing cdhit-2d.c++ -c c++ -fopenmp -DWITH_ZLIB -O2 -pipe -O2 -fno-strict-aliasing cdhit-est-2d.c++ -c c++ -fopenmp -DWITH_ZLIB -O2 -pipe -O2 -fno-strict-aliasing cdhit-div.c++ -c c++ -fopenmp -DWITH_ZLIB -O2 -pipe -O2 -fno-strict-aliasing cdhit-454.c++ -c c++ -fopenmp -DWITH_ZLIB -O2 -pipe -O2 -fno-strict-aliasing cdhit.o cdhit-common.o cdhit-utility.o -lz -o cd-hit c++ -fopenmp -DWITH_ZLIB -O2 -pipe -O2 -fno-strict-aliasing cdhit-est.o cdhit-common.o cdhit-utility.o -lz -o cd-hit-est c++ -fopenmp -DWITH_ZLIB -O2 -pipe -O2 -fno-strict-aliasing cdhit-2d.o cdhit-common.o cdhit-utility.o -lz -o cd-hit-2d c++ -fopenmp -DWITH_ZLIB -O2 -pipe -O2 -fno-strict-aliasing cdhit-est-2d.o cdhit-common.o cdhit-utility.o -lz -o cd-hit-est-2d c++ -fopenmp -DWITH_ZLIB -O2 -pipe -O2 -fno-strict-aliasing cdhit-div.o cdhit-common.o cdhit-utility.o -lz -o cd-hit-div c++ -fopenmp -DWITH_ZLIB -O2 -pipe -O2 -fno-strict-aliasing cdhit-454.o cdhit-common.o cdhit-utility.o -lz -o cd-hit-454 gmake[1]: Leaving directory '/construction/biology/cd-hit/cdhit-4.8.1' SUCCEEDED 00:00:11 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for cd-hit-4.8.1_1 ===> Generating temporary packing list gmake[1]: Entering directory '/construction/biology/cd-hit/cdhit-4.8.1' gmake[1]: Nothing to be done for 'Makefile'. mkdir -p /construction/biology/cd-hit/stage/usr/local/bin for prog in cd-hit cd-hit-est cd-hit-2d cd-hit-est-2d cd-hit-div cd-hit-454; do \ install -m 0755 $prog /construction/biology/cd-hit/stage/usr/local/bin; \ done install -m 0755 *.pl /construction/biology/cd-hit/stage/usr/local/bin gmake[1]: Leaving directory '/construction/biology/cd-hit/cdhit-4.8.1' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for cd-hit-4.8.1_1 file sizes/checksums [37]: 0% file sizes/checksums [37]: 100% packing files [37]: 0% packing files [37]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:01 TOTAL TIME 00:00:16