------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 UNAME_r=6.1 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- MAKE=gmake XDG_DATA_HOME=/construction/biology/cd-hit XDG_CONFIG_HOME=/construction/biology/cd-hit HOME=/construction/biology/cd-hit TMPDIR="/tmp" PATH=/construction/biology/cd-hit/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/biology/cd-hit XDG_CONFIG_HOME=/construction/biology/cd-hit HOME=/construction/biology/cd-hit TMPDIR="/tmp" PATH=/construction/biology/cd-hit/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/biology/cd-hit/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- OSREL=6.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/cd-hit" EXAMPLESDIR="share/examples/cd-hit" DATADIR="share/cd-hit" WWWDIR="www/cd-hit" ETCDIR="etc/cd-hit" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/cd-hit DOCSDIR=/usr/local/share/doc/cd-hit EXAMPLESDIR=/usr/local/share/examples/cd-hit WWWDIR=/usr/local/www/cd-hit ETCDIR=/usr/local/etc/cd-hit SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_SUFX=.txz DEVELOPER=1 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600100 OSVERSION=9999999 OSREL=6.1 _OSRELEASE=6.1-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=10 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gettext-runtime-0.21.txz Installing /packages/All/gmake-4.3_2.txz SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> cd-hit-4.8.1_2 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> cd-hit-4.8.1_2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by cd-hit-4.8.1_2 for building SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> cd-hit-4.8.1_2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by cd-hit-4.8.1_2 for building => SHA256 Checksum OK for weizhongli-cdhit-V4.8.1_GH0.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> cd-hit-4.8.1_2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by cd-hit-4.8.1_2 for building ===> Extracting for cd-hit-4.8.1_2 => SHA256 Checksum OK for weizhongli-cdhit-V4.8.1_GH0.tar.gz. Extracted Memory Use: 1.74M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for cd-hit-4.8.1_2 ===> Applying ports patches for cd-hit-4.8.1_2 from /xports/biology/cd-hit/files SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> cd-hit-4.8.1_2 depends on package: gmake>=4.3 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> cd-hit-4.8.1_2 depends on package: gmake>=4.3 - found ===> Configuring for cd-hit-4.8.1_2 SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for cd-hit-4.8.1_2 gmake[1]: Entering directory '/construction/biology/cd-hit/cdhit-4.8.1' gmake[1]: Nothing to be done for 'Makefile'. c++ -fopenmp -DWITH_ZLIB -O2 -pipe -O2 -fno-strict-aliasing cdhit-common.c++ -c c++ -fopenmp -DWITH_ZLIB -O2 -pipe -O2 -fno-strict-aliasing cdhit-utility.c++ -c c++ -fopenmp -DWITH_ZLIB -O2 -pipe -O2 -fno-strict-aliasing cdhit.c++ -c c++ -fopenmp -DWITH_ZLIB -O2 -pipe -O2 -fno-strict-aliasing cdhit-est.c++ -c c++ -fopenmp -DWITH_ZLIB -O2 -pipe -O2 -fno-strict-aliasing cdhit-2d.c++ -c c++ -fopenmp -DWITH_ZLIB -O2 -pipe -O2 -fno-strict-aliasing cdhit-est-2d.c++ -c c++ -fopenmp -DWITH_ZLIB -O2 -pipe -O2 -fno-strict-aliasing cdhit-div.c++ -c c++ -fopenmp -DWITH_ZLIB -O2 -pipe -O2 -fno-strict-aliasing cdhit-454.c++ -c c++ -fopenmp -DWITH_ZLIB -O2 -pipe -O2 -fno-strict-aliasing cdhit.o cdhit-common.o cdhit-utility.o -lz -o cd-hit c++ -fopenmp -DWITH_ZLIB -O2 -pipe -O2 -fno-strict-aliasing cdhit-est.o cdhit-common.o cdhit-utility.o -lz -o cd-hit-est c++ -fopenmp -DWITH_ZLIB -O2 -pipe -O2 -fno-strict-aliasing cdhit-2d.o cdhit-common.o cdhit-utility.o -lz -o cd-hit-2d c++ -fopenmp -DWITH_ZLIB -O2 -pipe -O2 -fno-strict-aliasing cdhit-est-2d.o cdhit-common.o cdhit-utility.o -lz -o cd-hit-est-2d c++ -fopenmp -DWITH_ZLIB -O2 -pipe -O2 -fno-strict-aliasing cdhit-div.o cdhit-common.o cdhit-utility.o -lz -o cd-hit-div c++ -fopenmp -DWITH_ZLIB -O2 -pipe -O2 -fno-strict-aliasing cdhit-454.o cdhit-common.o cdhit-utility.o -lz -o cd-hit-454 gmake[1]: Leaving directory '/construction/biology/cd-hit/cdhit-4.8.1' SUCCEEDED 00:00:19 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for cd-hit-4.8.1_2 ===> Generating temporary packing list gmake[1]: Entering directory '/construction/biology/cd-hit/cdhit-4.8.1' gmake[1]: Nothing to be done for 'Makefile'. mkdir -p /construction/biology/cd-hit/stage/usr/local/bin for prog in cd-hit cd-hit-est cd-hit-2d cd-hit-est-2d cd-hit-div cd-hit-454; do \ install -m 0755 $prog /construction/biology/cd-hit/stage/usr/local/bin; \ done install -m 0755 *.pl /construction/biology/cd-hit/stage/usr/local/bin gmake[1]: Leaving directory '/construction/biology/cd-hit/cdhit-4.8.1' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for cd-hit-4.8.1_2 file sizes/checksums [37]: 0% file sizes/checksums [37]: 100% packing files [37]: 0% packing files [37]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:01 TOTAL TIME 00:00:25