------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 UNAME_r=6.1 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- MAKE=gmake XDG_DATA_HOME=/construction/biology/artemis XDG_CONFIG_HOME=/construction/biology/artemis HOME=/construction/biology/artemis TMPDIR="/tmp" PATH=/construction/biology/artemis/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/biology/artemis XDG_CONFIG_HOME=/construction/biology/artemis HOME=/construction/biology/artemis TMPDIR="/tmp" PATH=/construction/biology/artemis/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/biology/artemis/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- PORTVERSION="17.0.1.11" JAVASHAREDIR="share/java" JAVAJARDIR="share/java/classes" OSREL=6.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/artemis" EXAMPLESDIR="share/examples/artemis" DATADIR="share/artemis" WWWDIR="www/artemis" ETCDIR="etc/artemis" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/artemis DOCSDIR=/usr/local/share/doc/artemis EXAMPLESDIR=/usr/local/share/examples/artemis WWWDIR=/usr/local/www/artemis ETCDIR=/usr/local/etc/artemis SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_SUFX=.txz DEVELOPER=1 UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600102 OSVERSION=9999999 OSREL=6.1 _OSRELEASE=6.1-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=12 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/png-1.6.37_1.txz Installing /packages/All/freetype2-2.10.4.txz ===== Message from freetype2-2.10.4: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/site/index.html, if documentation was installed). Installing /packages/All/expat-2.4.1.txz Installing /packages/All/fontconfig-2.13.93_1,1.txz Installing /packages/All/libinotify-20180201_2.txz ===== Message from libinotify-20180201_2: -- Libinotify functionality on FreeBSD is missing support for - detecting a file being moved into or out of a directory within the same filesystem - certain modifications to a symbolic link (rather than the file it points to.) in addition to the known limitations on all platforms using kqueue(2) where various open and close notifications are unimplemented. This means the following regression tests will fail: Directory notifications: IN_MOVED_FROM IN_MOVED_TO Open/close notifications: IN_OPEN IN_CLOSE_NOWRITE IN_CLOSE_WRITE Symbolic Link notifications: IN_DONT_FOLLOW IN_ATTRIB IN_MOVE_SELF IN_DELETE_SELF Kernel patches to address the missing directory and symbolic link notifications are available from: https://github.com/libinotify-kqueue/libinotify-kqueue/tree/master/patches You might want to consider increasing the kern.maxfiles tunable if you plan to use this library for applications that need to monitor activity of a lot of files. Installing /packages/All/alsa-lib-1.2.2.txz ===== Message from alsa-lib-1.2.2: -- ===> NOTICE: The alsa-lib port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing Installing /packages/All/giflib-5.2.1.txz Installing /packages/All/javavmwrapper-2.7.7.txz Installing /packages/All/libfontenc-1.1.4.txz Installing /packages/All/mkfontscale-1.2.1.txz Installing /packages/All/dejavu-2.37_1.txz ===== Message from dejavu-2.37_1: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Installing /packages/All/java-zoneinfo-2021.a.txz Installing /packages/All/libpthread-stubs-0.4.txz Installing /packages/All/libXau-1.0.9.txz Installing /packages/All/xorgproto-2021.4.txz Installing /packages/All/libXdmcp-1.1.3.txz Installing /packages/All/libxcb-1.14_1.txz Installing /packages/All/libX11-1.7.2,1.txz Installing /packages/All/libXext-1.3.4,1.txz Installing /packages/All/libXfixes-5.0.3_2.txz Installing /packages/All/libXi-1.7.10,1.txz Installing /packages/All/libXrender-0.9.10_2.txz Installing /packages/All/libICE-1.0.10,1.txz Installing /packages/All/libSM-1.2.3,1.txz Installing /packages/All/libXt-1.2.1,1.txz Installing /packages/All/libXtst-1.2.3_2.txz Installing /packages/All/openjdk8-8.292.10.1.txz ===== Message from openjdk8-8.292.10.1: -- This OpenJDK implementation requires procfs(5) mounted on /proc. If you have not done it yet, please do the following: mount -t procfs proc /proc To make it permanent, you need the following lines in /etc/fstab: proc /proc procfs rw 0 0 Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gettext-runtime-0.21.txz Installing /packages/All/gmake-4.3_2.txz Installing /packages/All/ncurses-6.2.20210626.txz ===== Message from ncurses-6.2.20210626: -- { type: install message: < artemis-17.0.1.11 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> artemis-17.0.1.11 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by artemis-17.0.1.11 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> artemis-17.0.1.11 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by artemis-17.0.1.11 for building => SHA256 Checksum OK for sanger-pathogens-artemis-v17.0.1-11-g3e43d27e_GH0.tar.gz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> artemis-17.0.1.11 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by artemis-17.0.1.11 for building ===> Extracting for artemis-17.0.1.11 => SHA256 Checksum OK for sanger-pathogens-artemis-v17.0.1-11-g3e43d27e_GH0.tar.gz. Extracted Memory Use: 128.94M SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for artemis-17.0.1.11 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> artemis-17.0.1.11 depends on file: /usr/local/openjdk8/bin/java - found ===> artemis-17.0.1.11 depends on package: gmake>=4.3 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> artemis-17.0.1.11 depends on file: /usr/local/openjdk8/bin/java - found ===> artemis-17.0.1.11 depends on package: gmake>=4.3 - found ===> Configuring for artemis-17.0.1.11 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for artemis-17.0.1.11 gmake[1]: Entering directory '/construction/biology/artemis/artemis-17.0.1-11-g3e43d27e' CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/Action.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/ActionController.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/ActionVector.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/AlignMatch.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/AlignMatchVector.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/AlignmentSelectionChangeEvent.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/AlignmentSelectionChangeListener.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/BlastM8ComparisonData.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/ChangeEvent.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/ChangeEventVector.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/ChangeListener.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/ClipBoard.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/ComparisonData.java warning: Implicitly compiled files were not subject to annotation processing. Use -proc:none to disable annotation processing or -implicit to specify a policy for implicit compilation. Note: uk/ac/sanger/artemis/ChangeEventVector.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 1 warning CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/ComparisonDataFactory.java warning: Implicitly compiled files were not subject to annotation processing. Use -proc:none to disable annotation processing or -implicit to specify a policy for implicit compilation. 1 warning CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/ComparisonDataParseException.java warning: Implicitly compiled files were not subject to annotation processing. Use -proc:none to disable annotation processing or -implicit to specify a policy for implicit compilation. Note: ./uk/ac/sanger/artemis/util/FastVector.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 1 warning CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/Entry.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/EntryChangeEvent.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/EntryChangeListener.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/EntryGroup.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/EntryGroupChangeEvent.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/EntryGroupChangeListener.java warning: Implicitly compiled files were not subject to annotation processing. Use -proc:none to disable annotation processing or -implicit to specify a policy for implicit compilation. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 1 warning CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/EntrySource.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/EntrySourceVector.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/EntryVector.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/ExternalProgram.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/ExternalProgramEvent.java Note: uk/ac/sanger/artemis/EntryVector.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/ExternalProgramException.java Note: uk/ac/sanger/artemis/EntrySourceVector.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/ExternalProgramThread.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/FeatureFromVectorPredicate.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/FeatureKeyPredicate.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/FeatureKeyQualifierPredicate.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/FeaturePatternPredicate.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/FeaturePredicateConjunction.java warning: Implicitly compiled files were not subject to annotation processing. Use -proc:none to disable annotation processing or -implicit to specify a policy for implicit compilation. Note: ./uk/ac/sanger/artemis/SimpleExternalProgramMonitor.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 1 warning CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/FeaturePredicateVector.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/FilteredEntryGroup.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/MUMmerComparisonData.java Note: uk/ac/sanger/artemis/FeaturePredicateVector.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/SimpleEntryGroup.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/SimpleGotoEventSource.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/chado/ChadoDAO.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/chado/ChadoDemo.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/chado/DbSqlConfig.java Note: uk/ac/sanger/artemis/SimpleGotoEventSource.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/circular/BlockComparator.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/circular/EmbossCirdnaReader.java warning: Implicitly compiled files were not subject to annotation processing. Use -proc:none to disable annotation processing or -implicit to specify a policy for implicit compilation. Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 1 warning CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/circular/LineAttribute.java Note: uk/ac/sanger/artemis/SimpleEntryGroup.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. warning: Implicitly compiled files were not subject to annotation processing. Use -proc:none to disable annotation processing or -implicit to specify a policy for implicit compilation. Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/circular/MemoryComboBox.java 1 warning CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/circular/digest/Utils.java Note: uk/ac/sanger/artemis/chado/ChadoDemo.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/circular/digest/CutSite.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/circular/digest/EmbossDigestParser.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/circular/digest/EmbossTableParser.java warning: Implicitly compiled files were not subject to annotation processing. Use -proc:none to disable annotation processing or -implicit to specify a policy for implicit compilation. Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 1 warning warning: Implicitly compiled files were not subject to annotation processing. Use -proc:none to disable annotation processing or -implicit to specify a policy for implicit compilation. Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 1 warning CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/circular/digest/FileSelectionPanel.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/circular/digest/FragmentBand.java warning: Implicitly compiled files were not subject to annotation processing. Use -proc:none to disable annotation processing or -implicit to specify a policy for implicit compilation. Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 1 warning CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/circular/digest/InSilicoGelPanel.java Note: uk/ac/sanger/artemis/circular/EmbossCirdnaReader.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/components/BioJavaEntrySource.java warning: Implicitly compiled files were not subject to annotation processing. Use -proc:none to disable annotation processing or -implicit to specify a policy for implicit compilation. Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 1 warning warning: Implicitly compiled files were not subject to annotation processing. Use -proc:none to disable annotation processing or -implicit to specify a policy for implicit compilation. Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 1 warning CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/components/EntryEditVector.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/components/ListDialog.java Note: uk/ac/sanger/artemis/circular/MemoryComboBox.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/components/TransferableContig.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/components/alignment/RunSamTools.java warning: Implicitly compiled files were not subject to annotation processing. Use -proc:none to disable annotation processing or -implicit to specify a policy for implicit compilation. 1 warning CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/io/EntryStreamEvent.java Note: uk/ac/sanger/artemis/circular/LineAttribute.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/io/GffToEMBL.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/io/ReadOnlyEmblStreamFeature.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/io/ReadOnlyEntry.java CLASSPATH=lib/commons-lang-2.6.jar:lib/biojava.jar:lib/jemAlign.jar:lib/j2ssh/j2ssh-core.jar:lib/ibatis/ibatis-2.3.4.726.jar:lib/ibatis/log4j-1.2.14.jar:lib/postgresql-8.4-701.jdbc3.jar:lib/picard/picard.jar:lib/commons-net-3.6.jar:lib/batik/batik-awt-util.jar:lib/batik/batik-dom.jar:lib/batik/batik-ext.jar:lib/batik/batik-svggen.jar:lib/batik/batik-util.jar:lib/batik/batik-xml.jar:. javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/circular/digest/CircularGenomeController.java Note: uk/ac/sanger/artemis/components/BioJavaEntrySource.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. mkdir -p jar_build/build rm -f *.jar cd jar_build/build; \ for fileJar in ../../lib/*.jar; do \ jar xvf $fileJar; \ rm -rf META-INF/MANIFEST.MF; \ done; \ for fileJar in ../../lib/j2ssh/*.jar; do \ jar xvf $fileJar; \ rm -rf META-INF/MANIFEST.MF; \ done; \ for fileJar in ../../lib/ibatis/*.jar; do \ jar xvf $fileJar; \ rm -rf META-INF/MANIFEST.MF; \ done; \ for fileJar in ../../lib/batik/*.jar; do \ jar xvf $fileJar; \ rm -rf META-INF/MANIFEST.MF; \ done; \ for fileJar in ../../lib/picard/*.jar; do \ jar xvf $fileJar; \ rm -rf META-INF/MANIFEST.MF; \ done; \ cp -R ../../lib/LICENSE.* ../../uk ../../org ../../etc ../../images ../../lib/j2ssh/j2ssh.properties \ ../../images/Wellcome_Sanger_Institute_Logo_Landscape_Digital_RGB_Full_Colour.jpg ../../images/icon.gif ../../README.md ../../artemis_sqlmap . created: META-INF/ inflated: META-INF/MANIFEST.MF created: org/ created: org/biojava/ created: org/biojava/bibliography/ created: org/biojava/bio/ created: org/biojava/bio/alignment/ created: org/biojava/bio/annodb/ created: org/biojava/bio/chromatogram/ created: org/biojava/bio/chromatogram/graphic/ created: org/biojava/bio/dist/ created: org/biojava/bio/dp/ created: org/biojava/bio/dp/onehead/ created: org/biojava/bio/dp/twohead/ created: org/biojava/bio/gui/ created: org/biojava/bio/gui/glyph/ created: org/biojava/bio/gui/sequence/ created: org/biojava/bio/gui/sequence/tracklayout/ created: org/biojava/bio/molbio/ created: org/biojava/bio/program/ created: org/biojava/bio/program/abi/ created: org/biojava/bio/program/blast2html/ created: org/biojava/bio/program/das/ created: org/biojava/bio/program/das/dasalignment/ created: org/biojava/bio/program/das/dasstructure/ created: org/biojava/bio/program/formats/ created: org/biojava/bio/program/gff/ created: org/biojava/bio/program/gff3/ created: org/biojava/bio/program/hmmer/ created: org/biojava/bio/program/homologene/ created: org/biojava/bio/program/indexdb/ created: org/biojava/bio/program/phred/ created: org/biojava/bio/program/sax/ created: org/biojava/bio/program/sax/blastxml/ created: org/biojava/bio/program/scf/ created: org/biojava/bio/program/ssaha/ created: org/biojava/bio/program/ssbind/ created: org/biojava/bio/program/tagvalue/ created: org/biojava/bio/program/unigene/ created: org/biojava/bio/program/xff/ created: org/biojava/bio/program/xml/ created: org/biojava/bio/proteomics/ created: org/biojava/bio/proteomics/aaindex/ created: org/biojava/bio/search/ created: org/biojava/bio/seq/ created: org/biojava/bio/seq/db/ created: org/biojava/bio/seq/db/biofetch/ created: org/biojava/bio/seq/db/biosql/ created: org/biojava/bio/seq/db/emblcd/ created: org/biojava/bio/seq/db/flat/ created: org/biojava/bio/seq/distributed/ created: org/biojava/bio/seq/filter/ created: org/biojava/bio/seq/homol/ created: org/biojava/bio/seq/impl/ created: org/biojava/bio/seq/io/ created: org/biojava/bio/seq/io/agave/ created: org/biojava/bio/seq/io/filterxml/ created: org/biojava/bio/seq/io/game/ created: org/biojava/bio/seq/io/game12/ created: org/biojava/bio/seq/projection/ created: org/biojava/bio/structure/ created: org/biojava/bio/structure/align/ created: org/biojava/bio/structure/align/helper/ created: org/biojava/bio/structure/align/pairwise/ created: org/biojava/bio/structure/gui/ created: org/biojava/bio/structure/io/ created: org/biojava/bio/structure/jama/ created: org/biojava/bio/structure/server/ created: org/biojava/bio/symbol/ created: org/biojava/bio/taxa/ created: org/biojava/directory/ created: org/biojava/naming/ created: org/biojava/ontology/ created: org/biojava/ontology/io/ created: org/biojava/stats/ created: org/biojava/stats/svm/ created: org/biojava/stats/svm/tools/ created: org/biojava/utils/ created: org/biojava/utils/automata/ created: org/biojava/utils/cache/ created: org/biojava/utils/candy/ created: org/biojava/utils/io/ created: org/biojava/utils/lsid/ created: org/biojava/utils/math/ created: org/biojava/utils/net/ created: org/biojava/utils/process/ created: org/biojava/utils/regex/ created: org/biojava/utils/stax/ created: org/biojava/utils/walker/ created: org/biojava/utils/xml/ created: org/biojavax/ created: org/biojavax/bio/ created: org/biojavax/bio/db/ created: org/biojavax/bio/db/biosql/ created: org/biojavax/bio/db/ncbi/ created: org/biojavax/bio/phylo/ created: org/biojavax/bio/phylo/io/ created: org/biojavax/bio/phylo/io/nexus/ created: org/biojavax/bio/phylo/io/phylip/ created: org/biojavax/bio/seq/ created: org/biojavax/bio/seq/io/ created: org/biojavax/bio/taxa/ created: org/biojavax/bio/taxa/io/ created: org/biojavax/ga/ created: org/biojavax/ga/exception/ created: org/biojavax/ga/functions/ created: org/biojavax/ga/impl/ created: org/biojavax/ga/util/ created: org/biojavax/ontology/ created: org/biojavax/utils/ inflated: org/biojava/bibliography/BibRef.class inflated: org/biojava/bibliography/BibRefException.class inflated: org/biojava/bibliography/BibRefQuery.class inflated: org/biojava/bibliography/BibRefSupport.class inflated: org/biojava/bibliography/BiblioArticle.class inflated: org/biojava/bibliography/BiblioBook.class inflated: org/biojava/bibliography/BiblioBookArticle.class inflated: org/biojava/bibliography/BiblioCriterion.class inflated: org/biojava/bibliography/BiblioDescription.class inflated: org/biojava/bibliography/BiblioEntryStatus.class inflated: org/biojava/bibliography/BiblioJournal.class inflated: org/biojava/bibliography/BiblioJournalArticle.class inflated: org/biojava/bibliography/BiblioOrganisation.class inflated: org/biojava/bibliography/BiblioPatent.class inflated: org/biojava/bibliography/BiblioPerson.class inflated: org/biojava/bibliography/BiblioProceeding.class inflated: org/biojava/bibliography/BiblioProvider.class inflated: org/biojava/bibliography/BiblioScope.class inflated: org/biojava/bibliography/BiblioService.class inflated: org/biojava/bibliography/BiblioSubject.class inflated: org/biojava/bibliography/BiblioTechReport.class inflated: org/biojava/bibliography/BiblioThesis.class inflated: org/biojava/bibliography/BiblioWebResource.class inflated: org/biojava/bio/AbstractAnnotation.class inflated: org/biojava/bio/Annotatable$AnnotationForwarder.class inflated: org/biojava/bio/Annotatable.class inflated: org/biojava/bio/Annotation.class inflated: org/biojava/bio/AnnotationChanger$1.class inflated: org/biojava/bio/AnnotationChanger$MappedHash.class inflated: org/biojava/bio/AnnotationChanger$WrappedSet$1$1.class inflated: org/biojava/bio/AnnotationChanger$WrappedSet$1.class inflated: org/biojava/bio/AnnotationChanger$WrappedSet.class inflated: org/biojava/bio/AnnotationChanger.class inflated: org/biojava/bio/AnnotationRenamer$1.class inflated: org/biojava/bio/AnnotationRenamer$MappedHash.class inflated: org/biojava/bio/AnnotationRenamer$WrappedSet$1$1.class inflated: org/biojava/bio/AnnotationRenamer$WrappedSet$1.class inflated: 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org/biojava/bio/seq/io/agave/AGAVEDescPropHandler.class inflated: org/biojava/bio/seq/io/agave/AGAVEElementIdPropHandler$1.class inflated: org/biojava/bio/seq/io/agave/AGAVEElementIdPropHandler.class inflated: org/biojava/bio/seq/io/agave/AGAVEEvidenceCallbackItf.class inflated: org/biojava/bio/seq/io/agave/AGAVEEvidenceHandler$1.class inflated: org/biojava/bio/seq/io/agave/AGAVEEvidenceHandler.class inflated: org/biojava/bio/seq/io/agave/AGAVEExonsPropHandler$1.class inflated: org/biojava/bio/seq/io/agave/AGAVEExonsPropHandler.class inflated: org/biojava/bio/seq/io/agave/AGAVEFeatureCallbackItf.class inflated: org/biojava/bio/seq/io/agave/AGAVEFragmentOrderHandler$1.class inflated: org/biojava/bio/seq/io/agave/AGAVEFragmentOrderHandler.class inflated: org/biojava/bio/seq/io/agave/AGAVEFragmentOrientationHandler$1.class inflated: org/biojava/bio/seq/io/agave/AGAVEFragmentOrientationHandler.class inflated: org/biojava/bio/seq/io/agave/AGAVEGeneHandler$1.class inflated: org/biojava/bio/seq/io/agave/AGAVEGeneHandler.class inflated: org/biojava/bio/seq/io/agave/AGAVEHandler.class inflated: org/biojava/bio/seq/io/agave/AGAVEIdAlias.class inflated: org/biojava/bio/seq/io/agave/AGAVEIdAliasCallbackItf.class inflated: org/biojava/bio/seq/io/agave/AGAVEIdAliasPropHandler$1.class inflated: org/biojava/bio/seq/io/agave/AGAVEIdAliasPropHandler.class inflated: org/biojava/bio/seq/io/agave/AGAVEKeywordPropHandler$1.class inflated: org/biojava/bio/seq/io/agave/AGAVEKeywordPropHandler.class inflated: org/biojava/bio/seq/io/agave/AGAVEMapLocation.class inflated: org/biojava/bio/seq/io/agave/AGAVEMapLocationPropHandler$1.class inflated: org/biojava/bio/seq/io/agave/AGAVEMapLocationPropHandler.class inflated: org/biojava/bio/seq/io/agave/AGAVEMapPosition.class inflated: org/biojava/bio/seq/io/agave/AGAVEMapPositionPropHandler$1.class inflated: org/biojava/bio/seq/io/agave/AGAVEMapPositionPropHandler.class inflated: org/biojava/bio/seq/io/agave/AGAVEMatchAlignPropHandler$1.class inflated: org/biojava/bio/seq/io/agave/AGAVEMatchAlignPropHandler.class inflated: org/biojava/bio/seq/io/agave/AGAVEMatchDescPropHandler$1.class inflated: org/biojava/bio/seq/io/agave/AGAVEMatchDescPropHandler.class inflated: org/biojava/bio/seq/io/agave/AGAVEMatchRegion.class inflated: org/biojava/bio/seq/io/agave/AGAVEMatchRegionPropHandler$1.class inflated: org/biojava/bio/seq/io/agave/AGAVEMatchRegionPropHandler.class inflated: org/biojava/bio/seq/io/agave/AGAVEMrnaHandler$1.class inflated: org/biojava/bio/seq/io/agave/AGAVEMrnaHandler.class inflated: org/biojava/bio/seq/io/agave/AGAVENotePropHandler$1.class inflated: org/biojava/bio/seq/io/agave/AGAVENotePropHandler.class inflated: org/biojava/bio/seq/io/agave/AGAVEPredictedProteinHandler$1.class inflated: org/biojava/bio/seq/io/agave/AGAVEPredictedProteinHandler.class inflated: org/biojava/bio/seq/io/agave/AGAVEProperty.class inflated: org/biojava/bio/seq/io/agave/AGAVEQualifierPropHandler$1.class inflated: org/biojava/bio/seq/io/agave/AGAVEQualifierPropHandler.class inflated: org/biojava/bio/seq/io/agave/AGAVEQueryRegion.class inflated: org/biojava/bio/seq/io/agave/AGAVEQueryRegionPropHandler$1.class inflated: org/biojava/bio/seq/io/agave/AGAVEQueryRegionPropHandler.class inflated: org/biojava/bio/seq/io/agave/AGAVERelatedAnnot.class inflated: org/biojava/bio/seq/io/agave/AGAVERelatedAnnotPropHandler$1.class inflated: org/biojava/bio/seq/io/agave/AGAVERelatedAnnotPropHandler.class inflated: org/biojava/bio/seq/io/agave/AGAVEResultGroupHandler$1.class inflated: org/biojava/bio/seq/io/agave/AGAVEResultGroupHandler.class inflated: org/biojava/bio/seq/io/agave/AGAVEResultPropertyPropHandler$1.class inflated: org/biojava/bio/seq/io/agave/AGAVEResultPropertyPropHandler.class inflated: org/biojava/bio/seq/io/agave/AGAVESciPropertyPropHandler$1.class inflated: org/biojava/bio/seq/io/agave/AGAVESciPropertyPropHandler.class 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org/biojava/bio/seq/io/agave/AGAVEXref.class inflated: org/biojava/bio/seq/io/agave/AGAVEXrefCallbackItf.class inflated: org/biojava/bio/seq/io/agave/AGAVEXrefPropHandler$1.class inflated: org/biojava/bio/seq/io/agave/AGAVEXrefPropHandler.class inflated: org/biojava/bio/seq/io/agave/AGAVEXrefPropPropHandler$1.class inflated: org/biojava/bio/seq/io/agave/AGAVEXrefPropPropHandler.class inflated: org/biojava/bio/seq/io/agave/AGAVEXrefs.class inflated: org/biojava/bio/seq/io/agave/AGAVEXrefsPropHandler$1.class inflated: org/biojava/bio/seq/io/agave/AGAVEXrefsPropHandler.class inflated: org/biojava/bio/seq/io/agave/Agave2AgaveAnnotFilter$1.class inflated: org/biojava/bio/seq/io/agave/Agave2AgaveAnnotFilter.class inflated: org/biojava/bio/seq/io/agave/AgaveWriter$Indent.class inflated: org/biojava/bio/seq/io/agave/AgaveWriter.class inflated: org/biojava/bio/seq/io/agave/DelegationManager.class inflated: org/biojava/bio/seq/io/agave/ElementRecognizer$AllElementRecognizer.class inflated: 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org/biojava/bio/seq/io/game12/GAMEFeatureSetHandler$3.class inflated: org/biojava/bio/seq/io/game12/GAMEFeatureSetHandler$4.class inflated: org/biojava/bio/seq/io/game12/GAMEFeatureSetHandler$5.class inflated: org/biojava/bio/seq/io/game12/GAMEFeatureSetHandler$AuthorHandler.class inflated: org/biojava/bio/seq/io/game12/GAMEFeatureSetHandler$FeatureSpanHandler.class inflated: org/biojava/bio/seq/io/game12/GAMEFeatureSetHandler$NameHandler.class inflated: org/biojava/bio/seq/io/game12/GAMEFeatureSetHandler$TypeHandler.class inflated: org/biojava/bio/seq/io/game12/GAMEFeatureSetHandler.class inflated: org/biojava/bio/seq/io/game12/GAMEFeatureSpanHandler$1.class inflated: org/biojava/bio/seq/io/game12/GAMEFeatureSpanHandler$2.class inflated: org/biojava/bio/seq/io/game12/GAMEFeatureSpanHandler$3.class inflated: org/biojava/bio/seq/io/game12/GAMEFeatureSpanHandler$4.class inflated: org/biojava/bio/seq/io/game12/GAMEFeatureSpanHandler$NameHandler.class inflated: org/biojava/bio/seq/io/game12/GAMEFeatureSpanHandler$SeqRelHandler.class inflated: org/biojava/bio/seq/io/game12/GAMEFeatureSpanHandler$TypeHandler.class inflated: org/biojava/bio/seq/io/game12/GAMEFeatureSpanHandler.class inflated: org/biojava/bio/seq/io/game12/GAMEGeneHandler$1.class inflated: org/biojava/bio/seq/io/game12/GAMEGeneHandler$2.class inflated: org/biojava/bio/seq/io/game12/GAMEGeneHandler$NameHandler.class inflated: org/biojava/bio/seq/io/game12/GAMEGeneHandler.class inflated: org/biojava/bio/seq/io/game12/GAMEHandler.class inflated: org/biojava/bio/seq/io/game12/GAMEPropertyHandler$1.class inflated: org/biojava/bio/seq/io/game12/GAMEPropertyHandler$2.class inflated: org/biojava/bio/seq/io/game12/GAMEPropertyHandler$3.class inflated: org/biojava/bio/seq/io/game12/GAMEPropertyHandler$TypeHandler.class inflated: org/biojava/bio/seq/io/game12/GAMEPropertyHandler$ValueHandler.class inflated: org/biojava/bio/seq/io/game12/GAMEPropertyHandler.class inflated: org/biojava/bio/seq/io/game12/GAMESeqHandler$1.class inflated: org/biojava/bio/seq/io/game12/GAMESeqHandler$2.class inflated: org/biojava/bio/seq/io/game12/GAMESeqHandler$3.class inflated: org/biojava/bio/seq/io/game12/GAMESeqHandler$DescriptionHandler.class inflated: org/biojava/bio/seq/io/game12/GAMESeqHandler$NameHandler.class inflated: org/biojava/bio/seq/io/game12/GAMESeqHandler.class inflated: org/biojava/bio/seq/io/game12/GAMESeqRelHandler$1.class inflated: org/biojava/bio/seq/io/game12/GAMESeqRelHandler$2.class inflated: org/biojava/bio/seq/io/game12/GAMESeqRelHandler$SpanHandler.class inflated: org/biojava/bio/seq/io/game12/GAMESeqRelHandler.class inflated: org/biojava/bio/seq/io/game12/GAMESpanHandler$1.class inflated: org/biojava/bio/seq/io/game12/GAMESpanHandler$2.class inflated: org/biojava/bio/seq/io/game12/GAMESpanHandler$3.class inflated: org/biojava/bio/seq/io/game12/GAMESpanHandler$EndHandler.class inflated: org/biojava/bio/seq/io/game12/GAMESpanHandler$StartHandler.class inflated: org/biojava/bio/seq/io/game12/GAMESpanHandler.class inflated: org/biojava/bio/seq/io/game12/StAXFeatureHandler$Binding.class inflated: org/biojava/bio/seq/io/game12/StAXFeatureHandler.class inflated: org/biojava/bio/seq/io/game12/StAXHandlerFactory.class inflated: org/biojava/bio/seq/projection/ProjectedFeature.class inflated: org/biojava/bio/seq/projection/ProjectedFeatureHolder$1.class inflated: org/biojava/bio/seq/projection/ProjectedFeatureHolder.class inflated: org/biojava/bio/seq/projection/Projection.class inflated: org/biojava/bio/seq/projection/ProjectionContext.class inflated: org/biojava/bio/seq/projection/ProjectionEngine$Instantiator.class inflated: org/biojava/bio/seq/projection/ProjectionEngine$InstantiatorImpl.class inflated: org/biojava/bio/seq/projection/ProjectionEngine$PEClassLoader.class inflated: org/biojava/bio/seq/projection/ProjectionEngine$TemplateProjector.class inflated: 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org/postgresql/jdbc3/Jdbc3PoolingDataSource.class inflated: org/postgresql/jdbc3/Jdbc3SimpleDataSource.class inflated: org/postgresql/jdbc3/PSQLSavepoint.class inflated: org/postgresql/jdbc3/Jdbc3ParameterMetaData.class inflated: org/postgresql/jdbc3/Jdbc3ResultSetMetaData.class created: org/postgresql/ssl/ inflated: org/postgresql/ssl/WrappedFactory.class inflated: org/postgresql/ssl/MakeSSL.class inflated: org/postgresql/ssl/NonValidatingFactory$NonValidatingTM.class inflated: org/postgresql/ssl/NonValidatingFactory.class inflated: org/postgresql/Driver$1.class inflated: org/postgresql/Driver$ConnectThread.class inflated: org/postgresql/Driver.class created: org/postgresql/translation/ inflated: org/postgresql/translation/messages_cs.class inflated: org/postgresql/translation/messages_de.class inflated: org/postgresql/translation/messages_es.class inflated: org/postgresql/translation/messages_fr.class inflated: org/postgresql/translation/messages_it.class inflated: org/postgresql/translation/messages_nl.class inflated: org/postgresql/translation/messages_pl.class inflated: org/postgresql/translation/messages_pt_BR.class inflated: org/postgresql/translation/messages_ru.class inflated: org/postgresql/translation/messages_sr.class inflated: org/postgresql/translation/messages_tr.class inflated: org/postgresql/translation/messages_zh_CN.class inflated: org/postgresql/translation/messages_zh_TW.class created: META-INF/services/ inflated: META-INF/services/java.sql.Driver created: META-INF/ inflated: META-INF/MANIFEST.MF created: org/ created: org/apache/ created: org/apache/commons/ created: org/apache/commons/logging/ created: org/apache/commons/logging/impl/ inflated: org/apache/commons/logging/impl/Jdk14Logger.class inflated: org/apache/commons/logging/impl/Log4JCategoryLog.class inflated: org/apache/commons/logging/impl/Log4JLogger.class inflated: org/apache/commons/logging/impl/Log4jFactory.class inflated: org/apache/commons/logging/impl/LogFactoryImpl$1.class inflated: org/apache/commons/logging/impl/LogFactoryImpl.class inflated: org/apache/commons/logging/impl/LogKitLogger.class inflated: org/apache/commons/logging/impl/NoOpLog.class inflated: org/apache/commons/logging/impl/SimpleLog$1.class inflated: org/apache/commons/logging/impl/SimpleLog.class inflated: org/apache/commons/logging/impl/package.html inflated: org/apache/commons/logging/Log.class inflated: org/apache/commons/logging/LogFactory$1.class inflated: org/apache/commons/logging/LogFactory$2.class inflated: org/apache/commons/logging/LogFactory$3.class inflated: org/apache/commons/logging/LogFactory.class inflated: org/apache/commons/logging/LogConfigurationException.class inflated: org/apache/commons/logging/LogSource.class inflated: org/apache/commons/logging/package.html inflated: META-INF/LICENSE.txt created: META-INF/ inflated: META-INF/MANIFEST.MF created: uk/ac/sanger/artemis/j2ssh/ created: uk/ac/sanger/artemis/j2ssh/CVS/ inflated: uk/ac/sanger/artemis/j2ssh/CVS/Entries inflated: uk/ac/sanger/artemis/j2ssh/CVS/Repository inflated: uk/ac/sanger/artemis/j2ssh/CVS/Root extracted: uk/ac/sanger/artemis/j2ssh/CVS/Template inflated: uk/ac/sanger/artemis/j2ssh/FileTransferProgressMonitor.class inflated: uk/ac/sanger/artemis/j2ssh/FileTransferProgressMonitor.java inflated: uk/ac/sanger/artemis/j2ssh/FTProgress.class inflated: uk/ac/sanger/artemis/j2ssh/FTProgress.java inflated: uk/ac/sanger/artemis/j2ssh/SshFileManager$1.class inflated: uk/ac/sanger/artemis/j2ssh/SshFileManager.class inflated: uk/ac/sanger/artemis/j2ssh/SshFileManager.java inflated: uk/ac/sanger/artemis/j2ssh/SshLogin.class inflated: uk/ac/sanger/artemis/j2ssh/SshLogin.java inflated: uk/ac/sanger/artemis/j2ssh/SshPSUClient$StdoutStdErrHandler.class inflated: uk/ac/sanger/artemis/j2ssh/SshPSUClient.class inflated: uk/ac/sanger/artemis/j2ssh/SshPSUClient.java created: META-INF/ inflated: META-INF/MANIFEST.MF created: com/ created: com/sshtools/ created: com/sshtools/j2ssh/ inflated: com/sshtools/j2ssh/DirectoryOperation.class inflated: com/sshtools/j2ssh/FileTransferProgress.class inflated: com/sshtools/j2ssh/ScpClient$ScpChannel.class inflated: com/sshtools/j2ssh/ScpClient$ScpInputStream.class inflated: com/sshtools/j2ssh/ScpClient.class inflated: com/sshtools/j2ssh/SftpClient.class inflated: com/sshtools/j2ssh/SshClient$ActiveChannelEventListener.class inflated: com/sshtools/j2ssh/SshClient.class inflated: com/sshtools/j2ssh/SshEventAdapter.class inflated: com/sshtools/j2ssh/SshException.class inflated: com/sshtools/j2ssh/SshRuntimeException.class inflated: com/sshtools/j2ssh/SshThread.class inflated: com/sshtools/j2ssh/TransferCancelledException.class created: com/sshtools/j2ssh/agent/ inflated: com/sshtools/j2ssh/agent/AgentAuthenticationClient.class inflated: com/sshtools/j2ssh/agent/AgentNotAvailableException.class inflated: com/sshtools/j2ssh/agent/AgentSocketChannel.class inflated: 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inflated: com/sshtools/j2ssh/agent/SshAgentLock.class inflated: com/sshtools/j2ssh/agent/SshAgentOperationComplete.class inflated: com/sshtools/j2ssh/agent/SshAgentPing.class inflated: com/sshtools/j2ssh/agent/SshAgentPrivateKeyOp.class inflated: com/sshtools/j2ssh/agent/SshAgentRandom.class inflated: com/sshtools/j2ssh/agent/SshAgentRandomData.class inflated: com/sshtools/j2ssh/agent/SshAgentRequestVersion.class inflated: com/sshtools/j2ssh/agent/SshAgentSocketListener$1.class inflated: com/sshtools/j2ssh/agent/SshAgentSocketListener$2.class inflated: com/sshtools/j2ssh/agent/SshAgentSocketListener.class inflated: com/sshtools/j2ssh/agent/SshAgentSuccess.class inflated: com/sshtools/j2ssh/agent/SshAgentUnlock.class inflated: com/sshtools/j2ssh/agent/SshAgentVersionResponse.class created: com/sshtools/j2ssh/authentication/ inflated: com/sshtools/j2ssh/authentication/AuthenticationProtocolClient.class inflated: com/sshtools/j2ssh/authentication/AuthenticationProtocolException.class inflated: com/sshtools/j2ssh/authentication/AuthenticationProtocolListener.class inflated: com/sshtools/j2ssh/authentication/AuthenticationProtocolState.class inflated: com/sshtools/j2ssh/authentication/HostbasedAuthenticationClient.class inflated: com/sshtools/j2ssh/authentication/KBIAuthenticationClient.class inflated: com/sshtools/j2ssh/authentication/KBIPrompt.class inflated: com/sshtools/j2ssh/authentication/KBIRequestHandler.class inflated: com/sshtools/j2ssh/authentication/PasswordAuthenticationClient.class inflated: com/sshtools/j2ssh/authentication/PasswordChangePrompt.class inflated: com/sshtools/j2ssh/authentication/PublicKeyAuthenticationClient.class inflated: com/sshtools/j2ssh/authentication/SshAuthenticationClient.class inflated: com/sshtools/j2ssh/authentication/SshAuthenticationClientFactory.class inflated: com/sshtools/j2ssh/authentication/SshAuthenticationPrompt.class inflated: com/sshtools/j2ssh/authentication/SshMsgUserAuthBanner.class inflated: 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org/apache/batik/ext/awt/image/renderable/TurbulenceRable8Bit.class created: org/apache/batik/ext/awt/image/rendered/ inflated: org/apache/batik/ext/awt/image/rendered/AbstractRed.class inflated: org/apache/batik/ext/awt/image/rendered/AbstractTiledRed.class inflated: org/apache/batik/ext/awt/image/rendered/AffineRed.class inflated: org/apache/batik/ext/awt/image/rendered/Any2LsRGBRed.class inflated: org/apache/batik/ext/awt/image/rendered/Any2LumRed.class inflated: org/apache/batik/ext/awt/image/rendered/Any2sRGBRed.class inflated: org/apache/batik/ext/awt/image/rendered/BufferedImageCachableRed.class inflated: org/apache/batik/ext/awt/image/rendered/BumpMap.class inflated: org/apache/batik/ext/awt/image/rendered/CachableRed.class inflated: org/apache/batik/ext/awt/image/rendered/ColorMatrixRed.class inflated: org/apache/batik/ext/awt/image/rendered/ComponentTransferRed$1.class inflated: org/apache/batik/ext/awt/image/rendered/ComponentTransferRed.class inflated: 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org/apache/batik/ext/awt/image/rendered/LRUCache$LRUObj.class inflated: org/apache/batik/ext/awt/image/rendered/LRUCache.class inflated: org/apache/batik/ext/awt/image/rendered/MorphologyOp.class inflated: org/apache/batik/ext/awt/image/rendered/MultiplyAlphaRed.class inflated: org/apache/batik/ext/awt/image/rendered/PadRed$ZeroRecter.class inflated: org/apache/batik/ext/awt/image/rendered/PadRed$ZeroRecter_INT_PACK.class inflated: org/apache/batik/ext/awt/image/rendered/PadRed.class inflated: org/apache/batik/ext/awt/image/rendered/ProfileRed.class inflated: org/apache/batik/ext/awt/image/rendered/RenderedImageCachableRed.class inflated: org/apache/batik/ext/awt/image/rendered/SpecularLightingRed.class inflated: org/apache/batik/ext/awt/image/rendered/TileBlock.class inflated: org/apache/batik/ext/awt/image/rendered/TileCache.class inflated: org/apache/batik/ext/awt/image/rendered/TileCacheRed.class inflated: org/apache/batik/ext/awt/image/rendered/TileGenerator.class inflated: org/apache/batik/ext/awt/image/rendered/TileGrid.class inflated: org/apache/batik/ext/awt/image/rendered/TileLRUMember.class inflated: org/apache/batik/ext/awt/image/rendered/TileMap$TileMapLRUMember$RasterSoftRef.class inflated: org/apache/batik/ext/awt/image/rendered/TileMap$TileMapLRUMember.class inflated: org/apache/batik/ext/awt/image/rendered/TileMap.class inflated: org/apache/batik/ext/awt/image/rendered/TileRed.class inflated: org/apache/batik/ext/awt/image/rendered/TileStore.class inflated: org/apache/batik/ext/awt/image/rendered/TranslateRed.class inflated: org/apache/batik/ext/awt/image/rendered/TurbulencePatternRed$StitchInfo.class inflated: org/apache/batik/ext/awt/image/rendered/TurbulencePatternRed.class created: org/apache/batik/ext/awt/image/spi/ inflated: org/apache/batik/ext/awt/image/spi/AbstractRegistryEntry.class inflated: org/apache/batik/ext/awt/image/spi/BrokenLinkProvider.class inflated: org/apache/batik/ext/awt/image/spi/DefaultBrokenLinkProvider.class inflated: org/apache/batik/ext/awt/image/spi/ErrorConstants.class inflated: org/apache/batik/ext/awt/image/spi/ImageTagRegistry.class inflated: org/apache/batik/ext/awt/image/spi/ImageWriter.class inflated: org/apache/batik/ext/awt/image/spi/ImageWriterParams.class inflated: org/apache/batik/ext/awt/image/spi/ImageWriterRegistry.class inflated: org/apache/batik/ext/awt/image/spi/JDKRegistryEntry$1.class inflated: org/apache/batik/ext/awt/image/spi/JDKRegistryEntry$MyImgObs.class inflated: org/apache/batik/ext/awt/image/spi/JDKRegistryEntry.class inflated: org/apache/batik/ext/awt/image/spi/MagicNumberRegistryEntry$MagicNumber.class inflated: org/apache/batik/ext/awt/image/spi/MagicNumberRegistryEntry.class inflated: org/apache/batik/ext/awt/image/spi/RegistryEntry.class inflated: org/apache/batik/ext/awt/image/spi/StreamRegistryEntry.class inflated: org/apache/batik/ext/awt/image/spi/URLRegistryEntry.class created: org/apache/batik/ext/swing/ inflated: org/apache/batik/ext/swing/AffineTransformTracker.class inflated: org/apache/batik/ext/swing/DoubleDocument.class inflated: org/apache/batik/ext/swing/GridBagConstants.class inflated: org/apache/batik/ext/swing/JAffineTransformChooser$1.class inflated: org/apache/batik/ext/swing/JAffineTransformChooser$2.class inflated: org/apache/batik/ext/swing/JAffineTransformChooser$3.class inflated: org/apache/batik/ext/swing/JAffineTransformChooser$4.class inflated: org/apache/batik/ext/swing/JAffineTransformChooser$Closer.class inflated: org/apache/batik/ext/swing/JAffineTransformChooser$Dialog.class inflated: org/apache/batik/ext/swing/JAffineTransformChooser$DisposeOnClose.class inflated: org/apache/batik/ext/swing/JAffineTransformChooser.class inflated: org/apache/batik/ext/swing/JGridBagPanel$1.class inflated: org/apache/batik/ext/swing/JGridBagPanel$DefaultInsetsManager.class inflated: org/apache/batik/ext/swing/JGridBagPanel$InsetsManager.class inflated: org/apache/batik/ext/swing/JGridBagPanel$ZeroInsetsManager.class inflated: org/apache/batik/ext/swing/JGridBagPanel.class inflated: org/apache/batik/ext/swing/Messages.class inflated: org/apache/batik/ext/swing/Resources.class created: org/apache/batik/ext/awt/image/codec/ created: org/apache/batik/ext/awt/image/spi/resources/ created: org/apache/batik/ext/swing/resources/ inflated: org/apache/batik/ext/awt/image/spi/resources/Messages.properties inflated: org/apache/batik/ext/swing/resources/Messages.properties created: META-INF/ inflated: META-INF/MANIFEST.MF inflated: META-INF/LICENSE inflated: META-INF/NOTICE created: org/ created: org/apache/ created: org/apache/batik/ created: org/apache/batik/ext/ created: org/apache/batik/ext/awt/ created: org/apache/batik/ext/awt/image/ created: org/apache/batik/ext/awt/image/codec/ created: org/apache/batik/ext/awt/image/codec/imageio/ inflated: org/apache/batik/ext/awt/image/codec/imageio/AbstractImageIORegistryEntry$1.class inflated: org/apache/batik/ext/awt/image/codec/imageio/AbstractImageIORegistryEntry.class inflated: org/apache/batik/ext/awt/image/codec/imageio/ImageIODebugUtil.class inflated: org/apache/batik/ext/awt/image/codec/imageio/ImageIOImageWriter.class inflated: org/apache/batik/ext/awt/image/codec/imageio/ImageIOJPEGImageWriter.class inflated: org/apache/batik/ext/awt/image/codec/imageio/ImageIOJPEGRegistryEntry.class inflated: org/apache/batik/ext/awt/image/codec/imageio/ImageIOPNGImageWriter.class inflated: org/apache/batik/ext/awt/image/codec/imageio/ImageIOPNGRegistryEntry.class inflated: org/apache/batik/ext/awt/image/codec/imageio/ImageIOTIFFImageWriter.class inflated: org/apache/batik/ext/awt/image/codec/imageio/ImageIOTIFFRegistryEntry.class inflated: org/apache/batik/ext/awt/image/codec/imageio/PNGTranscoderImageIOWriteAdapter.class inflated: org/apache/batik/ext/awt/image/codec/imageio/TIFFTranscoderImageIOWriteAdapter.class created: org/apache/batik/ext/awt/image/codec/jpeg/ inflated: org/apache/batik/ext/awt/image/codec/jpeg/JPEGImageWriter.class inflated: org/apache/batik/ext/awt/image/codec/jpeg/JPEGRegistryEntry$1.class inflated: org/apache/batik/ext/awt/image/codec/jpeg/JPEGRegistryEntry.class created: org/apache/batik/ext/awt/image/codec/png/ inflated: org/apache/batik/ext/awt/image/codec/png/CRC.class inflated: org/apache/batik/ext/awt/image/codec/png/ChunkStream.class inflated: org/apache/batik/ext/awt/image/codec/png/IDATOutputStream.class inflated: org/apache/batik/ext/awt/image/codec/png/PNGChunk.class inflated: org/apache/batik/ext/awt/image/codec/png/PNGDecodeParam.class inflated: org/apache/batik/ext/awt/image/codec/png/PNGEncodeParam$Gray.class inflated: org/apache/batik/ext/awt/image/codec/png/PNGEncodeParam$Palette.class inflated: org/apache/batik/ext/awt/image/codec/png/PNGEncodeParam$RGB.class inflated: org/apache/batik/ext/awt/image/codec/png/PNGEncodeParam.class inflated: org/apache/batik/ext/awt/image/codec/png/PNGImage.class inflated: org/apache/batik/ext/awt/image/codec/png/PNGImageDecoder.class inflated: org/apache/batik/ext/awt/image/codec/png/PNGImageEncoder.class inflated: org/apache/batik/ext/awt/image/codec/png/PNGImageWriter.class inflated: org/apache/batik/ext/awt/image/codec/png/PNGRed$PNGChunk.class inflated: org/apache/batik/ext/awt/image/codec/png/PNGRed.class inflated: org/apache/batik/ext/awt/image/codec/png/PNGRegistryEntry$1.class inflated: org/apache/batik/ext/awt/image/codec/png/PNGRegistryEntry.class inflated: org/apache/batik/ext/awt/image/codec/png/PNGSuggestedPaletteEntry.class inflated: org/apache/batik/ext/awt/image/codec/png/PNGTranscoderInternalCodecWriteAdapter.class created: org/apache/batik/ext/awt/image/codec/tiff/ inflated: org/apache/batik/ext/awt/image/codec/tiff/TIFFDecodeParam.class inflated: org/apache/batik/ext/awt/image/codec/tiff/TIFFDirectory.class inflated: org/apache/batik/ext/awt/image/codec/tiff/TIFFEncodeParam.class inflated: org/apache/batik/ext/awt/image/codec/tiff/TIFFFaxDecoder.class inflated: org/apache/batik/ext/awt/image/codec/tiff/TIFFField.class inflated: org/apache/batik/ext/awt/image/codec/tiff/TIFFImage.class inflated: org/apache/batik/ext/awt/image/codec/tiff/TIFFImageDecoder.class inflated: org/apache/batik/ext/awt/image/codec/tiff/TIFFImageEncoder.class inflated: org/apache/batik/ext/awt/image/codec/tiff/TIFFLZWDecoder.class inflated: org/apache/batik/ext/awt/image/codec/tiff/TIFFRegistryEntry$1.class inflated: org/apache/batik/ext/awt/image/codec/tiff/TIFFRegistryEntry.class inflated: org/apache/batik/ext/awt/image/codec/tiff/TIFFTranscoderInternalCodecWriteAdapter.class created: org/apache/batik/ext/awt/image/codec/util/ inflated: org/apache/batik/ext/awt/image/codec/util/FileCacheSeekableStream.class inflated: org/apache/batik/ext/awt/image/codec/util/ForwardSeekableStream.class inflated: org/apache/batik/ext/awt/image/codec/util/ImageDecodeParam.class inflated: org/apache/batik/ext/awt/image/codec/util/ImageDecoder.class inflated: org/apache/batik/ext/awt/image/codec/util/ImageDecoderImpl.class inflated: org/apache/batik/ext/awt/image/codec/util/ImageEncodeParam.class inflated: org/apache/batik/ext/awt/image/codec/util/ImageEncoder.class inflated: org/apache/batik/ext/awt/image/codec/util/ImageEncoderImpl.class inflated: org/apache/batik/ext/awt/image/codec/util/MemoryCacheSeekableStream.class inflated: org/apache/batik/ext/awt/image/codec/util/PropertyUtil.class inflated: org/apache/batik/ext/awt/image/codec/util/SeekableOutputStream.class inflated: org/apache/batik/ext/awt/image/codec/util/SeekableStream.class inflated: org/apache/batik/ext/awt/image/codec/util/SimpleRenderedImage.class inflated: org/apache/batik/ext/awt/image/codec/util/SingleTileRenderedImage.class created: META-INF/services/ inflated: META-INF/services/org.apache.batik.ext.awt.image.spi.ImageWriter inflated: META-INF/services/org.apache.batik.ext.awt.image.spi.RegistryEntry inflated: org/apache/batik/ext/awt/image/codec/properties created: META-INF/ inflated: META-INF/MANIFEST.MF inflated: META-INF/LICENSE inflated: META-INF/NOTICE created: org/ created: org/apache/ created: org/apache/batik/ created: org/apache/batik/dom/ inflated: org/apache/batik/dom/AbstractAttr$AttrTypeInfo.class inflated: org/apache/batik/dom/AbstractAttr.class inflated: org/apache/batik/dom/AbstractAttrNS.class inflated: org/apache/batik/dom/AbstractCharacterData.class inflated: org/apache/batik/dom/AbstractChildNode.class inflated: org/apache/batik/dom/AbstractComment.class inflated: org/apache/batik/dom/AbstractDOMImplementation.class inflated: org/apache/batik/dom/AbstractDocument$DocumentConfiguration$ParameterNameList.class inflated: org/apache/batik/dom/AbstractDocument$DocumentConfiguration.class inflated: org/apache/batik/dom/AbstractDocument$DocumentError$ErrorLocation.class inflated: org/apache/batik/dom/AbstractDocument$DocumentError.class inflated: org/apache/batik/dom/AbstractDocument$IdSoftRef.class inflated: org/apache/batik/dom/AbstractDocument$XPathExpr$NSPrefixResolver.class inflated: org/apache/batik/dom/AbstractDocument$XPathExpr$Result.class inflated: org/apache/batik/dom/AbstractDocument$XPathExpr.class inflated: org/apache/batik/dom/AbstractDocument$XPathNodeNSResolver.class inflated: org/apache/batik/dom/AbstractDocument.class inflated: org/apache/batik/dom/AbstractDocumentFragment.class inflated: org/apache/batik/dom/AbstractElement$ElementTypeInfo.class inflated: org/apache/batik/dom/AbstractElement$Entry.class inflated: org/apache/batik/dom/AbstractElement$NamedNodeHashMap.class inflated: org/apache/batik/dom/AbstractElement.class inflated: org/apache/batik/dom/AbstractElementNS.class inflated: org/apache/batik/dom/AbstractEntity.class inflated: org/apache/batik/dom/AbstractEntityReference.class inflated: org/apache/batik/dom/AbstractNode$1.class 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org/apache/batik/xml/LexicalUnits.class inflated: org/apache/batik/xml/XMLCharacters.class inflated: org/apache/batik/xml/XMLException.class inflated: org/apache/batik/xml/XMLScanner.class inflated: org/apache/batik/xml/XMLStreamNormalizingReader.class inflated: org/apache/batik/xml/XMLUtilities.class created: org/apache/batik/xml/scanner/ created: org/apache/batik/xml/scanner/resources/ inflated: org/apache/batik/xml/scanner/resources/Messages.properties created: META-INF/ inflated: META-INF/MANIFEST.MF created: picard/ created: picard/analysis/ inflated: picard/analysis/AbstractWgsMetricsCollector.class inflated: picard/analysis/AdapterUtility.class inflated: picard/analysis/AlignmentSummaryMetrics$Category.class inflated: picard/analysis/AlignmentSummaryMetrics.class inflated: picard/analysis/AlignmentSummaryMetricsCollector$GroupAlignmentSummaryMetricsPerUnitMetricCollector$IndividualAlignmentSummaryMetricsCollector.class inflated: 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META-INF/maven/commons-io/ created: META-INF/maven/commons-io/commons-io/ inflated: META-INF/maven/commons-io/commons-io/pom.xml inflated: META-INF/maven/commons-io/commons-io/pom.properties created: org/broadinstitute/gatk/ created: org/broadinstitute/gatk/nativebindings/ inflated: org/broadinstitute/gatk/nativebindings/NativeLibrary.class created: org/broadinstitute/gatk/nativebindings/pairhmm/ inflated: org/broadinstitute/gatk/nativebindings/pairhmm/HaplotypeDataHolder.class inflated: org/broadinstitute/gatk/nativebindings/pairhmm/PairHMMNativeArguments.class inflated: org/broadinstitute/gatk/nativebindings/pairhmm/PairHMMNativeBinding.class inflated: org/broadinstitute/gatk/nativebindings/pairhmm/ReadDataHolder.class created: org/broadinstitute/gatk/nativebindings/smithwaterman/ inflated: org/broadinstitute/gatk/nativebindings/smithwaterman/SWAlignerNativeBinding.class inflated: org/broadinstitute/gatk/nativebindings/smithwaterman/SWNativeAlignerResult.class inflated: org/broadinstitute/gatk/nativebindings/smithwaterman/SWOverhangStrategy.class inflated: org/broadinstitute/gatk/nativebindings/smithwaterman/SWParameters.class inflated: META-INF/DEPENDENCIES inflated: META-INF/LICENSE inflated: META-INF/NOTICE created: org/apache/logging/ created: org/apache/logging/log4j/ inflated: org/apache/logging/log4j/EventLogger.class inflated: org/apache/logging/log4j/Level.class inflated: org/apache/logging/log4j/Logger.class inflated: org/apache/logging/log4j/LoggingException.class inflated: org/apache/logging/log4j/LogManager.class inflated: org/apache/logging/log4j/Marker.class inflated: org/apache/logging/log4j/MarkerManager$Log4jMarker.class inflated: org/apache/logging/log4j/MarkerManager.class created: org/apache/logging/log4j/message/ inflated: org/apache/logging/log4j/message/AbstractMessageFactory.class inflated: org/apache/logging/log4j/message/BasicThreadInformation.class inflated: org/apache/logging/log4j/message/ExtendedThreadInformation$1.class inflated: org/apache/logging/log4j/message/ExtendedThreadInformation.class inflated: org/apache/logging/log4j/message/FormattedMessage.class inflated: org/apache/logging/log4j/message/FormattedMessageFactory.class inflated: org/apache/logging/log4j/message/LocalizedMessage.class inflated: org/apache/logging/log4j/message/LocalizedMessageFactory.class inflated: org/apache/logging/log4j/message/LoggerNameAwareMessage.class inflated: org/apache/logging/log4j/message/MapMessage$1.class inflated: org/apache/logging/log4j/message/MapMessage$MapFormat.class inflated: org/apache/logging/log4j/message/MapMessage.class inflated: org/apache/logging/log4j/message/Message.class inflated: org/apache/logging/log4j/message/MessageFactory.class inflated: org/apache/logging/log4j/message/MessageFormatMessage.class inflated: org/apache/logging/log4j/message/MessageFormatMessageFactory.class inflated: org/apache/logging/log4j/message/MultiformatMessage.class inflated: org/apache/logging/log4j/message/ObjectArrayMessage.class inflated: org/apache/logging/log4j/message/ObjectMessage.class inflated: org/apache/logging/log4j/message/ParameterizedMessage.class inflated: org/apache/logging/log4j/message/ParameterizedMessageFactory.class inflated: org/apache/logging/log4j/message/ParameterizedNoReferenceMessageFactory.class inflated: org/apache/logging/log4j/message/SimpleMessage.class inflated: org/apache/logging/log4j/message/SimpleMessageFactory.class inflated: org/apache/logging/log4j/message/StringFormattedMessage.class inflated: org/apache/logging/log4j/message/StringFormatterMessageFactory.class inflated: org/apache/logging/log4j/message/StructuredDataId.class inflated: org/apache/logging/log4j/message/StructuredDataMessage$Format.class inflated: org/apache/logging/log4j/message/StructuredDataMessage.class inflated: org/apache/logging/log4j/message/ThreadDumpMessage$1.class inflated: org/apache/logging/log4j/message/ThreadDumpMessage$BasicThreadInfoFactory.class inflated: org/apache/logging/log4j/message/ThreadDumpMessage$ExtendedThreadInfoFactory.class inflated: org/apache/logging/log4j/message/ThreadDumpMessage$ThreadDumpMessageProxy.class inflated: org/apache/logging/log4j/message/ThreadDumpMessage$ThreadInfoFactory.class inflated: org/apache/logging/log4j/message/ThreadDumpMessage.class inflated: org/apache/logging/log4j/message/ThreadInformation.class inflated: org/apache/logging/log4j/message/TimestampMessage.class created: org/apache/logging/log4j/simple/ inflated: org/apache/logging/log4j/simple/SimpleLogger.class inflated: org/apache/logging/log4j/simple/SimpleLoggerContext.class inflated: org/apache/logging/log4j/simple/SimpleLoggerContextFactory.class created: org/apache/logging/log4j/spi/ inflated: org/apache/logging/log4j/spi/AbstractLogger.class inflated: org/apache/logging/log4j/spi/AbstractLoggerAdapter.class inflated: org/apache/logging/log4j/spi/DefaultThreadContextMap$1.class inflated: org/apache/logging/log4j/spi/DefaultThreadContextMap.class inflated: org/apache/logging/log4j/spi/DefaultThreadContextStack.class inflated: org/apache/logging/log4j/spi/ExtendedLogger.class inflated: org/apache/logging/log4j/spi/ExtendedLoggerWrapper.class inflated: org/apache/logging/log4j/spi/LoggerAdapter.class inflated: org/apache/logging/log4j/spi/LoggerContext.class inflated: org/apache/logging/log4j/spi/LoggerContextFactory.class inflated: org/apache/logging/log4j/spi/LoggerContextKey.class inflated: org/apache/logging/log4j/spi/MutableThreadContextStack.class inflated: org/apache/logging/log4j/spi/Provider.class inflated: org/apache/logging/log4j/spi/StandardLevel.class inflated: org/apache/logging/log4j/spi/ThreadContextMap.class inflated: org/apache/logging/log4j/spi/ThreadContextStack.class created: org/apache/logging/log4j/status/ inflated: org/apache/logging/log4j/status/StatusConsoleListener.class inflated: org/apache/logging/log4j/status/StatusData.class inflated: org/apache/logging/log4j/status/StatusListener.class inflated: org/apache/logging/log4j/status/StatusLogger$BoundedQueue.class inflated: org/apache/logging/log4j/status/StatusLogger.class inflated: org/apache/logging/log4j/ThreadContext$1.class inflated: org/apache/logging/log4j/ThreadContext$ContextStack.class inflated: org/apache/logging/log4j/ThreadContext$EmptyIterator.class inflated: org/apache/logging/log4j/ThreadContext$EmptyThreadContextStack.class inflated: org/apache/logging/log4j/ThreadContext.class created: org/apache/logging/log4j/util/ inflated: org/apache/logging/log4j/util/Activator.class inflated: org/apache/logging/log4j/util/Chars.class inflated: org/apache/logging/log4j/util/EnglishEnums.class inflated: org/apache/logging/log4j/util/LambdaUtil.class inflated: org/apache/logging/log4j/util/LoaderUtil$1.class inflated: org/apache/logging/log4j/util/LoaderUtil$ThreadContextClassLoaderGetter.class inflated: org/apache/logging/log4j/util/LoaderUtil$UrlResource.class inflated: org/apache/logging/log4j/util/LoaderUtil.class inflated: org/apache/logging/log4j/util/MessageSupplier.class inflated: org/apache/logging/log4j/util/PropertiesUtil.class inflated: org/apache/logging/log4j/util/ProviderUtil.class inflated: org/apache/logging/log4j/util/ReflectionUtil$PrivateSecurityManager.class inflated: org/apache/logging/log4j/util/ReflectionUtil.class inflated: org/apache/logging/log4j/util/StringBuilders.class inflated: org/apache/logging/log4j/util/Strings.class inflated: org/apache/logging/log4j/util/Supplier.class created: META-INF/maven/org.apache.logging.log4j/ created: META-INF/maven/org.apache.logging.log4j/log4j-api/ inflated: META-INF/maven/org.apache.logging.log4j/log4j-api/pom.xml inflated: META-INF/maven/org.apache.logging.log4j/log4j-api/pom.properties inflated: Log4j-config.xsd inflated: Log4j-events.dtd inflated: Log4j-events.xsd inflated: Log4j-levels.xsd inflated: META-INF/log4j-provider.properties created: META-INF/org/ created: META-INF/org/apache/ created: META-INF/org/apache/logging/ created: META-INF/org/apache/logging/log4j/ created: META-INF/org/apache/logging/log4j/core/ created: META-INF/org/apache/logging/log4j/core/config/ created: META-INF/org/apache/logging/log4j/core/config/plugins/ inflated: META-INF/org/apache/logging/log4j/core/config/plugins/Log4j2Plugins.dat created: META-INF/services/ inflated: META-INF/services/javax.annotation.processing.Processor created: org/apache/logging/log4j/core/ inflated: org/apache/logging/log4j/core/AbstractLifeCycle.class inflated: org/apache/logging/log4j/core/AbstractLogEvent.class created: org/apache/logging/log4j/core/appender/ inflated: org/apache/logging/log4j/core/appender/AbstractAppender.class inflated: org/apache/logging/log4j/core/appender/AbstractManager.class inflated: org/apache/logging/log4j/core/appender/AbstractOutputStreamAppender.class inflated: org/apache/logging/log4j/core/appender/AbstractWriterAppender.class inflated: org/apache/logging/log4j/core/appender/AppenderLoggingException.class inflated: org/apache/logging/log4j/core/appender/AsyncAppender$AsyncThread.class inflated: org/apache/logging/log4j/core/appender/AsyncAppender.class inflated: org/apache/logging/log4j/core/appender/ConsoleAppender$1.class inflated: org/apache/logging/log4j/core/appender/ConsoleAppender$Builder.class inflated: org/apache/logging/log4j/core/appender/ConsoleAppender$ConsoleManagerFactory.class inflated: org/apache/logging/log4j/core/appender/ConsoleAppender$FactoryData.class inflated: org/apache/logging/log4j/core/appender/ConsoleAppender$SystemErrStream.class inflated: org/apache/logging/log4j/core/appender/ConsoleAppender$SystemOutStream.class inflated: org/apache/logging/log4j/core/appender/ConsoleAppender$Target.class inflated: org/apache/logging/log4j/core/appender/ConsoleAppender.class created: org/apache/logging/log4j/core/appender/db/ inflated: org/apache/logging/log4j/core/appender/db/AbstractDatabaseAppender.class inflated: org/apache/logging/log4j/core/appender/db/AbstractDatabaseManager$AbstractFactoryData.class inflated: org/apache/logging/log4j/core/appender/db/AbstractDatabaseManager.class created: org/apache/logging/log4j/core/appender/db/jdbc/ inflated: org/apache/logging/log4j/core/appender/db/jdbc/ColumnConfig.class inflated: org/apache/logging/log4j/core/appender/db/jdbc/ConnectionSource.class inflated: org/apache/logging/log4j/core/appender/db/jdbc/DataSourceConnectionSource.class inflated: org/apache/logging/log4j/core/appender/db/jdbc/FactoryMethodConnectionSource$1.class inflated: org/apache/logging/log4j/core/appender/db/jdbc/FactoryMethodConnectionSource.class inflated: org/apache/logging/log4j/core/appender/db/jdbc/JdbcAppender.class inflated: org/apache/logging/log4j/core/appender/db/jdbc/JdbcDatabaseManager$1.class inflated: org/apache/logging/log4j/core/appender/db/jdbc/JdbcDatabaseManager$Column.class inflated: org/apache/logging/log4j/core/appender/db/jdbc/JdbcDatabaseManager$FactoryData.class inflated: org/apache/logging/log4j/core/appender/db/jdbc/JdbcDatabaseManager$JdbcDatabaseManagerFactory.class inflated: org/apache/logging/log4j/core/appender/db/jdbc/JdbcDatabaseManager.class created: org/apache/logging/log4j/core/appender/db/jpa/ inflated: org/apache/logging/log4j/core/appender/db/jpa/AbstractLogEventWrapperEntity$1.class inflated: org/apache/logging/log4j/core/appender/db/jpa/AbstractLogEventWrapperEntity$NullLogEvent.class inflated: org/apache/logging/log4j/core/appender/db/jpa/AbstractLogEventWrapperEntity.class inflated: org/apache/logging/log4j/core/appender/db/jpa/BasicLogEventEntity.class created: org/apache/logging/log4j/core/appender/db/jpa/converter/ inflated: org/apache/logging/log4j/core/appender/db/jpa/converter/ContextMapAttributeConverter.class inflated: org/apache/logging/log4j/core/appender/db/jpa/converter/ContextMapJsonAttributeConverter$1.class inflated: org/apache/logging/log4j/core/appender/db/jpa/converter/ContextMapJsonAttributeConverter.class inflated: org/apache/logging/log4j/core/appender/db/jpa/converter/ContextStackAttributeConverter.class inflated: org/apache/logging/log4j/core/appender/db/jpa/converter/ContextStackJsonAttributeConverter$1.class inflated: org/apache/logging/log4j/core/appender/db/jpa/converter/ContextStackJsonAttributeConverter.class inflated: org/apache/logging/log4j/core/appender/db/jpa/converter/LevelAttributeConverter.class inflated: org/apache/logging/log4j/core/appender/db/jpa/converter/MarkerAttributeConverter.class inflated: org/apache/logging/log4j/core/appender/db/jpa/converter/MessageAttributeConverter.class inflated: org/apache/logging/log4j/core/appender/db/jpa/converter/StackTraceElementAttributeConverter.class inflated: org/apache/logging/log4j/core/appender/db/jpa/converter/ThrowableAttributeConverter.class inflated: org/apache/logging/log4j/core/appender/db/jpa/JpaAppender.class inflated: org/apache/logging/log4j/core/appender/db/jpa/JpaDatabaseManager$1.class inflated: org/apache/logging/log4j/core/appender/db/jpa/JpaDatabaseManager$FactoryData.class inflated: org/apache/logging/log4j/core/appender/db/jpa/JpaDatabaseManager$JPADatabaseManagerFactory.class inflated: org/apache/logging/log4j/core/appender/db/jpa/JpaDatabaseManager.class inflated: org/apache/logging/log4j/core/appender/DefaultErrorHandler.class inflated: org/apache/logging/log4j/core/appender/FailoverAppender.class inflated: org/apache/logging/log4j/core/appender/FailoversPlugin.class inflated: org/apache/logging/log4j/core/appender/FileAppender.class inflated: org/apache/logging/log4j/core/appender/FileManager$1.class inflated: org/apache/logging/log4j/core/appender/FileManager$FactoryData.class inflated: org/apache/logging/log4j/core/appender/FileManager$FileManagerFactory.class inflated: org/apache/logging/log4j/core/appender/FileManager.class inflated: org/apache/logging/log4j/core/appender/ManagerFactory.class inflated: org/apache/logging/log4j/core/appender/MemoryMappedFileAppender.class inflated: org/apache/logging/log4j/core/appender/MemoryMappedFileManager$1.class inflated: org/apache/logging/log4j/core/appender/MemoryMappedFileManager$FactoryData.class inflated: org/apache/logging/log4j/core/appender/MemoryMappedFileManager$MemoryMappedFileManagerFactory.class inflated: org/apache/logging/log4j/core/appender/MemoryMappedFileManager.class created: org/apache/logging/log4j/core/appender/mom/ created: org/apache/logging/log4j/core/appender/mom/jeromq/ inflated: org/apache/logging/log4j/core/appender/mom/jeromq/JeroMqAppender$1.class inflated: org/apache/logging/log4j/core/appender/mom/jeromq/JeroMqAppender.class inflated: org/apache/logging/log4j/core/appender/mom/JmsAppender$1.class inflated: org/apache/logging/log4j/core/appender/mom/JmsAppender$Builder.class inflated: org/apache/logging/log4j/core/appender/mom/JmsAppender.class inflated: org/apache/logging/log4j/core/appender/mom/JmsManager$1.class inflated: org/apache/logging/log4j/core/appender/mom/JmsManager$JmsConfiguration.class inflated: org/apache/logging/log4j/core/appender/mom/JmsManager$JmsManagerFactory.class inflated: org/apache/logging/log4j/core/appender/mom/JmsManager.class created: org/apache/logging/log4j/core/appender/mom/kafka/ inflated: org/apache/logging/log4j/core/appender/mom/kafka/DefaultKafkaProducerFactory.class inflated: org/apache/logging/log4j/core/appender/mom/kafka/KafkaAppender.class inflated: org/apache/logging/log4j/core/appender/mom/kafka/KafkaManager$1.class inflated: org/apache/logging/log4j/core/appender/mom/kafka/KafkaManager.class inflated: org/apache/logging/log4j/core/appender/mom/kafka/KafkaProducerFactory.class inflated: org/apache/logging/log4j/core/appender/OutputStreamAppender$1.class inflated: org/apache/logging/log4j/core/appender/OutputStreamAppender$Builder.class inflated: org/apache/logging/log4j/core/appender/OutputStreamAppender$FactoryData.class inflated: org/apache/logging/log4j/core/appender/OutputStreamAppender$OutputStreamManagerFactory.class inflated: org/apache/logging/log4j/core/appender/OutputStreamAppender.class inflated: org/apache/logging/log4j/core/appender/OutputStreamManager.class inflated: org/apache/logging/log4j/core/appender/RandomAccessFileAppender.class inflated: org/apache/logging/log4j/core/appender/RandomAccessFileManager$1.class inflated: org/apache/logging/log4j/core/appender/RandomAccessFileManager$FactoryData.class inflated: org/apache/logging/log4j/core/appender/RandomAccessFileManager$RandomAccessFileManagerFactory.class inflated: org/apache/logging/log4j/core/appender/RandomAccessFileManager.class created: org/apache/logging/log4j/core/appender/rewrite/ inflated: org/apache/logging/log4j/core/appender/rewrite/LoggerNameLevelRewritePolicy.class inflated: org/apache/logging/log4j/core/appender/rewrite/MapRewritePolicy$1.class inflated: org/apache/logging/log4j/core/appender/rewrite/MapRewritePolicy$Mode.class inflated: org/apache/logging/log4j/core/appender/rewrite/MapRewritePolicy.class inflated: org/apache/logging/log4j/core/appender/rewrite/PropertiesRewritePolicy.class inflated: org/apache/logging/log4j/core/appender/rewrite/RewriteAppender.class inflated: org/apache/logging/log4j/core/appender/rewrite/RewritePolicy.class created: org/apache/logging/log4j/core/appender/rolling/ inflated: org/apache/logging/log4j/core/appender/rolling/AbstractRolloverStrategy.class created: org/apache/logging/log4j/core/appender/rolling/action/ inflated: org/apache/logging/log4j/core/appender/rolling/action/AbstractAction.class inflated: org/apache/logging/log4j/core/appender/rolling/action/AbstractPathAction.class inflated: org/apache/logging/log4j/core/appender/rolling/action/Action.class inflated: org/apache/logging/log4j/core/appender/rolling/action/CommonsCompressAction.class inflated: org/apache/logging/log4j/core/appender/rolling/action/CompositeAction.class inflated: org/apache/logging/log4j/core/appender/rolling/action/DeleteAction.class inflated: org/apache/logging/log4j/core/appender/rolling/action/DeletingVisitor.class inflated: org/apache/logging/log4j/core/appender/rolling/action/Duration.class inflated: org/apache/logging/log4j/core/appender/rolling/action/FileRenameAction.class inflated: org/apache/logging/log4j/core/appender/rolling/action/GzCompressAction.class inflated: org/apache/logging/log4j/core/appender/rolling/action/IfAccumulatedFileCount.class inflated: org/apache/logging/log4j/core/appender/rolling/action/IfAccumulatedFileSize.class inflated: org/apache/logging/log4j/core/appender/rolling/action/IfAll.class inflated: org/apache/logging/log4j/core/appender/rolling/action/IfAny.class inflated: org/apache/logging/log4j/core/appender/rolling/action/IfFileName.class inflated: org/apache/logging/log4j/core/appender/rolling/action/IfLastModified.class inflated: org/apache/logging/log4j/core/appender/rolling/action/IfNot.class inflated: org/apache/logging/log4j/core/appender/rolling/action/PathCondition.class inflated: org/apache/logging/log4j/core/appender/rolling/action/PathSortByModificationTime.class inflated: org/apache/logging/log4j/core/appender/rolling/action/PathSorter.class inflated: org/apache/logging/log4j/core/appender/rolling/action/PathWithAttributes.class inflated: org/apache/logging/log4j/core/appender/rolling/action/ScriptCondition.class inflated: org/apache/logging/log4j/core/appender/rolling/action/SortingVisitor.class inflated: org/apache/logging/log4j/core/appender/rolling/action/ZipCompressAction.class inflated: org/apache/logging/log4j/core/appender/rolling/CompositeTriggeringPolicy.class inflated: org/apache/logging/log4j/core/appender/rolling/CronTriggeringPolicy$1.class inflated: org/apache/logging/log4j/core/appender/rolling/CronTriggeringPolicy$CronTrigger.class inflated: org/apache/logging/log4j/core/appender/rolling/CronTriggeringPolicy.class inflated: org/apache/logging/log4j/core/appender/rolling/DefaultRolloverStrategy$1.class inflated: org/apache/logging/log4j/core/appender/rolling/DefaultRolloverStrategy$FileExtensions$1.class inflated: org/apache/logging/log4j/core/appender/rolling/DefaultRolloverStrategy$FileExtensions$2.class inflated: org/apache/logging/log4j/core/appender/rolling/DefaultRolloverStrategy$FileExtensions$3.class inflated: org/apache/logging/log4j/core/appender/rolling/DefaultRolloverStrategy$FileExtensions$4.class inflated: org/apache/logging/log4j/core/appender/rolling/DefaultRolloverStrategy$FileExtensions$5.class inflated: org/apache/logging/log4j/core/appender/rolling/DefaultRolloverStrategy$FileExtensions$6.class inflated: org/apache/logging/log4j/core/appender/rolling/DefaultRolloverStrategy$FileExtensions.class inflated: org/apache/logging/log4j/core/appender/rolling/DefaultRolloverStrategy.class inflated: org/apache/logging/log4j/core/appender/rolling/FileSize.class inflated: org/apache/logging/log4j/core/appender/rolling/OnStartupTriggeringPolicy.class inflated: org/apache/logging/log4j/core/appender/rolling/PatternProcessor.class inflated: org/apache/logging/log4j/core/appender/rolling/RollingFileManager$1.class inflated: org/apache/logging/log4j/core/appender/rolling/RollingFileManager$AsyncAction.class inflated: org/apache/logging/log4j/core/appender/rolling/RollingFileManager$FactoryData.class inflated: org/apache/logging/log4j/core/appender/rolling/RollingFileManager$RollingFileManagerFactory.class inflated: org/apache/logging/log4j/core/appender/rolling/RollingFileManager.class inflated: org/apache/logging/log4j/core/appender/rolling/RollingRandomAccessFileManager$1.class inflated: org/apache/logging/log4j/core/appender/rolling/RollingRandomAccessFileManager$FactoryData.class inflated: org/apache/logging/log4j/core/appender/rolling/RollingRandomAccessFileManager$RollingRandomAccessFileManagerFactory.class inflated: org/apache/logging/log4j/core/appender/rolling/RollingRandomAccessFileManager.class inflated: org/apache/logging/log4j/core/appender/rolling/RolloverDescription.class inflated: org/apache/logging/log4j/core/appender/rolling/RolloverDescriptionImpl.class inflated: org/apache/logging/log4j/core/appender/rolling/RolloverFrequency.class inflated: org/apache/logging/log4j/core/appender/rolling/RolloverStrategy.class inflated: org/apache/logging/log4j/core/appender/rolling/SizeBasedTriggeringPolicy.class inflated: org/apache/logging/log4j/core/appender/rolling/TimeBasedTriggeringPolicy.class inflated: org/apache/logging/log4j/core/appender/rolling/TriggeringPolicy.class inflated: org/apache/logging/log4j/core/appender/RollingFileAppender.class inflated: org/apache/logging/log4j/core/appender/RollingRandomAccessFileAppender.class created: org/apache/logging/log4j/core/appender/routing/ inflated: org/apache/logging/log4j/core/appender/routing/IdlePurgePolicy.class inflated: org/apache/logging/log4j/core/appender/routing/PurgePolicy.class inflated: org/apache/logging/log4j/core/appender/routing/Route.class inflated: org/apache/logging/log4j/core/appender/routing/Routes.class inflated: org/apache/logging/log4j/core/appender/routing/RoutingAppender.class inflated: org/apache/logging/log4j/core/appender/SmtpAppender.class inflated: org/apache/logging/log4j/core/appender/SocketAppender$1.class inflated: org/apache/logging/log4j/core/appender/SocketAppender.class inflated: org/apache/logging/log4j/core/appender/SyslogAppender.class inflated: org/apache/logging/log4j/core/appender/TlsSyslogFrame.class inflated: org/apache/logging/log4j/core/appender/WriterAppender$1.class inflated: org/apache/logging/log4j/core/appender/WriterAppender$Builder.class inflated: org/apache/logging/log4j/core/appender/WriterAppender$FactoryData.class inflated: org/apache/logging/log4j/core/appender/WriterAppender$WriterManagerFactory.class inflated: org/apache/logging/log4j/core/appender/WriterAppender.class inflated: org/apache/logging/log4j/core/appender/WriterManager.class inflated: org/apache/logging/log4j/core/Appender.class created: org/apache/logging/log4j/core/async/ inflated: org/apache/logging/log4j/core/async/AsyncLogger.class inflated: org/apache/logging/log4j/core/async/AsyncLoggerConfig$RootLogger.class inflated: org/apache/logging/log4j/core/async/AsyncLoggerConfig.class inflated: org/apache/logging/log4j/core/async/AsyncLoggerConfigDelegate.class inflated: org/apache/logging/log4j/core/async/AsyncLoggerConfigDisruptor$1.class inflated: org/apache/logging/log4j/core/async/AsyncLoggerConfigDisruptor$2.class inflated: org/apache/logging/log4j/core/async/AsyncLoggerConfigDisruptor$Log4jEventWrapper.class inflated: org/apache/logging/log4j/core/async/AsyncLoggerConfigDisruptor$Log4jEventWrapperHandler.class inflated: org/apache/logging/log4j/core/async/AsyncLoggerConfigDisruptor.class inflated: org/apache/logging/log4j/core/async/AsyncLoggerContext.class inflated: org/apache/logging/log4j/core/async/AsyncLoggerContextSelector.class inflated: org/apache/logging/log4j/core/async/AsyncLoggerDisruptor.class inflated: org/apache/logging/log4j/core/async/DaemonThreadFactory.class inflated: org/apache/logging/log4j/core/async/DisruptorUtil$1.class inflated: org/apache/logging/log4j/core/async/DisruptorUtil.class inflated: org/apache/logging/log4j/core/async/RingBufferLogEvent$1.class inflated: org/apache/logging/log4j/core/async/RingBufferLogEvent$Factory.class inflated: org/apache/logging/log4j/core/async/RingBufferLogEvent.class inflated: org/apache/logging/log4j/core/async/RingBufferLogEventHandler.class inflated: org/apache/logging/log4j/core/async/RingBufferLogEventTranslator.class inflated: org/apache/logging/log4j/core/async/ThreadNameCachingStrategy$1.class inflated: org/apache/logging/log4j/core/async/ThreadNameCachingStrategy$2.class inflated: org/apache/logging/log4j/core/async/ThreadNameCachingStrategy.class created: org/apache/logging/log4j/core/config/ inflated: org/apache/logging/log4j/core/config/AbstractConfiguration.class inflated: org/apache/logging/log4j/core/config/AppenderControl.class inflated: org/apache/logging/log4j/core/config/AppenderRef.class inflated: org/apache/logging/log4j/core/config/AppendersPlugin.class inflated: org/apache/logging/log4j/core/config/AwaitCompletionReliabilityStrategy.class inflated: org/apache/logging/log4j/core/config/AwaitUnconditionallyReliabilityStrategy.class created: org/apache/logging/log4j/core/config/builder/ created: org/apache/logging/log4j/core/config/builder/api/ inflated: org/apache/logging/log4j/core/config/builder/api/AppenderComponentBuilder.class inflated: org/apache/logging/log4j/core/config/builder/api/AppenderRefComponentBuilder.class inflated: org/apache/logging/log4j/core/config/builder/api/Component.class inflated: org/apache/logging/log4j/core/config/builder/api/ComponentBuilder.class inflated: org/apache/logging/log4j/core/config/builder/api/CompositeFilterComponentBuilder.class inflated: org/apache/logging/log4j/core/config/builder/api/ConfigurationBuilder.class inflated: org/apache/logging/log4j/core/config/builder/api/ConfigurationBuilderFactory.class inflated: org/apache/logging/log4j/core/config/builder/api/CustomLevelComponentBuilder.class inflated: org/apache/logging/log4j/core/config/builder/api/FilterComponentBuilder.class inflated: org/apache/logging/log4j/core/config/builder/api/LayoutComponentBuilder.class inflated: org/apache/logging/log4j/core/config/builder/api/LoggerComponentBuilder.class inflated: org/apache/logging/log4j/core/config/builder/api/RootLoggerComponentBuilder.class inflated: org/apache/logging/log4j/core/config/builder/api/ScriptComponentBuilder.class inflated: org/apache/logging/log4j/core/config/builder/api/ScriptFileComponentBuilder.class created: org/apache/logging/log4j/core/config/builder/impl/ inflated: org/apache/logging/log4j/core/config/builder/impl/BuiltConfiguration.class inflated: org/apache/logging/log4j/core/config/builder/impl/DefaultAppenderComponentBuilder.class inflated: org/apache/logging/log4j/core/config/builder/impl/DefaultAppenderRefComponentBuilder.class inflated: org/apache/logging/log4j/core/config/builder/impl/DefaultComponentAndConfigurationBuilder.class inflated: org/apache/logging/log4j/core/config/builder/impl/DefaultComponentBuilder.class inflated: org/apache/logging/log4j/core/config/builder/impl/DefaultCompositeFilterComponentBuilder.class inflated: org/apache/logging/log4j/core/config/builder/impl/DefaultConfigurationBuilder.class inflated: org/apache/logging/log4j/core/config/builder/impl/DefaultCustomLevelComponentBuilder.class inflated: org/apache/logging/log4j/core/config/builder/impl/DefaultFilterComponentBuilder.class inflated: org/apache/logging/log4j/core/config/builder/impl/DefaultLayoutComponentBuilder.class inflated: org/apache/logging/log4j/core/config/builder/impl/DefaultLoggerComponentBuilder.class inflated: org/apache/logging/log4j/core/config/builder/impl/DefaultRootLoggerComponentBuilder.class inflated: org/apache/logging/log4j/core/config/builder/impl/DefaultScriptComponentBuilder.class inflated: org/apache/logging/log4j/core/config/builder/impl/DefaultScriptFileComponentBuilder.class inflated: org/apache/logging/log4j/core/config/Configuration.class inflated: org/apache/logging/log4j/core/config/ConfigurationException.class inflated: org/apache/logging/log4j/core/config/ConfigurationFactory$1.class inflated: org/apache/logging/log4j/core/config/ConfigurationFactory$Factory.class inflated: org/apache/logging/log4j/core/config/ConfigurationFactory.class inflated: org/apache/logging/log4j/core/config/ConfigurationListener.class inflated: org/apache/logging/log4j/core/config/ConfigurationScheduler$CronRunnable.class inflated: org/apache/logging/log4j/core/config/ConfigurationScheduler.class inflated: org/apache/logging/log4j/core/config/ConfigurationSource.class inflated: org/apache/logging/log4j/core/config/ConfiguratonFileWatcher$ReconfigurationWorker.class inflated: org/apache/logging/log4j/core/config/ConfiguratonFileWatcher.class inflated: org/apache/logging/log4j/core/config/Configurator.class inflated: org/apache/logging/log4j/core/config/CronScheduledFuture.class inflated: org/apache/logging/log4j/core/config/CustomLevelConfig.class inflated: org/apache/logging/log4j/core/config/CustomLevels.class inflated: org/apache/logging/log4j/core/config/DefaultAdvertiser.class inflated: org/apache/logging/log4j/core/config/DefaultConfiguration.class inflated: org/apache/logging/log4j/core/config/DefaultReliabilityStrategy.class created: org/apache/logging/log4j/core/config/json/ inflated: org/apache/logging/log4j/core/config/json/JsonConfiguration$ErrorType.class inflated: org/apache/logging/log4j/core/config/json/JsonConfiguration$Status.class inflated: org/apache/logging/log4j/core/config/json/JsonConfiguration.class inflated: org/apache/logging/log4j/core/config/json/JsonConfigurationFactory.class inflated: org/apache/logging/log4j/core/config/LockingReliabilityStrategy.class inflated: org/apache/logging/log4j/core/config/LoggerConfig$RootLogger.class inflated: org/apache/logging/log4j/core/config/LoggerConfig.class inflated: org/apache/logging/log4j/core/config/Loggers.class inflated: org/apache/logging/log4j/core/config/LoggersPlugin.class inflated: org/apache/logging/log4j/core/config/Node.class inflated: org/apache/logging/log4j/core/config/NullConfiguration.class inflated: org/apache/logging/log4j/core/config/Order.class inflated: org/apache/logging/log4j/core/config/OrderComparator.class created: org/apache/logging/log4j/core/config/plugins/ created: org/apache/logging/log4j/core/config/plugins/convert/ inflated: org/apache/logging/log4j/core/config/plugins/convert/EnumConverter.class inflated: org/apache/logging/log4j/core/config/plugins/convert/TypeConverter.class inflated: org/apache/logging/log4j/core/config/plugins/convert/TypeConverterRegistry.class inflated: org/apache/logging/log4j/core/config/plugins/convert/TypeConverters$BigDecimalConverter.class inflated: org/apache/logging/log4j/core/config/plugins/convert/TypeConverters$BigIntegerConverter.class inflated: org/apache/logging/log4j/core/config/plugins/convert/TypeConverters$BooleanConverter.class inflated: org/apache/logging/log4j/core/config/plugins/convert/TypeConverters$ByteArrayConverter.class inflated: org/apache/logging/log4j/core/config/plugins/convert/TypeConverters$ByteConverter.class inflated: org/apache/logging/log4j/core/config/plugins/convert/TypeConverters$CharacterConverter.class inflated: org/apache/logging/log4j/core/config/plugins/convert/TypeConverters$CharArrayConverter.class inflated: org/apache/logging/log4j/core/config/plugins/convert/TypeConverters$CharsetConverter.class inflated: org/apache/logging/log4j/core/config/plugins/convert/TypeConverters$ClassConverter.class inflated: org/apache/logging/log4j/core/config/plugins/convert/TypeConverters$CronExpressionConverter.class inflated: org/apache/logging/log4j/core/config/plugins/convert/TypeConverters$DoubleConverter.class inflated: org/apache/logging/log4j/core/config/plugins/convert/TypeConverters$DurationConverter.class inflated: org/apache/logging/log4j/core/config/plugins/convert/TypeConverters$FileConverter.class inflated: org/apache/logging/log4j/core/config/plugins/convert/TypeConverters$FloatConverter.class inflated: org/apache/logging/log4j/core/config/plugins/convert/TypeConverters$IntegerConverter.class inflated: org/apache/logging/log4j/core/config/plugins/convert/TypeConverters$LevelConverter.class inflated: org/apache/logging/log4j/core/config/plugins/convert/TypeConverters$LongConverter.class inflated: org/apache/logging/log4j/core/config/plugins/convert/TypeConverters$PatternConverter.class inflated: org/apache/logging/log4j/core/config/plugins/convert/TypeConverters$SecurityProviderConverter.class inflated: org/apache/logging/log4j/core/config/plugins/convert/TypeConverters$ShortConverter.class inflated: org/apache/logging/log4j/core/config/plugins/convert/TypeConverters$StringConverter.class inflated: org/apache/logging/log4j/core/config/plugins/convert/TypeConverters$UriConverter.class inflated: org/apache/logging/log4j/core/config/plugins/convert/TypeConverters$UrlConverter.class inflated: org/apache/logging/log4j/core/config/plugins/convert/TypeConverters.class inflated: org/apache/logging/log4j/core/config/plugins/Plugin.class inflated: org/apache/logging/log4j/core/config/plugins/PluginAliases.class inflated: org/apache/logging/log4j/core/config/plugins/PluginAttribute.class inflated: org/apache/logging/log4j/core/config/plugins/PluginBuilderAttribute.class inflated: org/apache/logging/log4j/core/config/plugins/PluginBuilderFactory.class inflated: org/apache/logging/log4j/core/config/plugins/PluginConfiguration.class inflated: org/apache/logging/log4j/core/config/plugins/PluginElement.class inflated: org/apache/logging/log4j/core/config/plugins/PluginFactory.class inflated: org/apache/logging/log4j/core/config/plugins/PluginNode.class inflated: org/apache/logging/log4j/core/config/plugins/PluginValue.class inflated: org/apache/logging/log4j/core/config/plugins/PluginVisitorStrategy.class created: org/apache/logging/log4j/core/config/plugins/processor/ inflated: org/apache/logging/log4j/core/config/plugins/processor/PluginCache.class inflated: org/apache/logging/log4j/core/config/plugins/processor/PluginEntry.class inflated: org/apache/logging/log4j/core/config/plugins/processor/PluginProcessor$1.class inflated: org/apache/logging/log4j/core/config/plugins/processor/PluginProcessor$PluginAliasesElementVisitor.class inflated: org/apache/logging/log4j/core/config/plugins/processor/PluginProcessor$PluginElementVisitor.class inflated: org/apache/logging/log4j/core/config/plugins/processor/PluginProcessor.class created: org/apache/logging/log4j/core/config/plugins/util/ inflated: org/apache/logging/log4j/core/config/plugins/util/PluginBuilder.class inflated: org/apache/logging/log4j/core/config/plugins/util/PluginManager.class inflated: org/apache/logging/log4j/core/config/plugins/util/PluginRegistry$PluginTest.class inflated: org/apache/logging/log4j/core/config/plugins/util/PluginRegistry.class inflated: org/apache/logging/log4j/core/config/plugins/util/PluginType.class inflated: org/apache/logging/log4j/core/config/plugins/util/ResolverUtil$Test.class inflated: org/apache/logging/log4j/core/config/plugins/util/ResolverUtil.class created: org/apache/logging/log4j/core/config/plugins/validation/ inflated: org/apache/logging/log4j/core/config/plugins/validation/Constraint.class created: org/apache/logging/log4j/core/config/plugins/validation/constraints/ inflated: org/apache/logging/log4j/core/config/plugins/validation/constraints/Required.class inflated: org/apache/logging/log4j/core/config/plugins/validation/ConstraintValidator.class inflated: org/apache/logging/log4j/core/config/plugins/validation/ConstraintValidators.class created: org/apache/logging/log4j/core/config/plugins/validation/validators/ inflated: org/apache/logging/log4j/core/config/plugins/validation/validators/RequiredValidator.class created: org/apache/logging/log4j/core/config/plugins/visitors/ inflated: org/apache/logging/log4j/core/config/plugins/visitors/AbstractPluginVisitor.class inflated: org/apache/logging/log4j/core/config/plugins/visitors/PluginAttributeVisitor.class inflated: org/apache/logging/log4j/core/config/plugins/visitors/PluginBuilderAttributeVisitor.class inflated: org/apache/logging/log4j/core/config/plugins/visitors/PluginConfigurationVisitor.class inflated: org/apache/logging/log4j/core/config/plugins/visitors/PluginElementVisitor.class inflated: org/apache/logging/log4j/core/config/plugins/visitors/PluginNodeVisitor.class inflated: org/apache/logging/log4j/core/config/plugins/visitors/PluginValueVisitor.class inflated: org/apache/logging/log4j/core/config/plugins/visitors/PluginVisitor.class inflated: org/apache/logging/log4j/core/config/plugins/visitors/PluginVisitors.class created: org/apache/logging/log4j/core/config/properties/ inflated: org/apache/logging/log4j/core/config/properties/PropertiesConfiguration.class inflated: org/apache/logging/log4j/core/config/properties/PropertiesConfigurationFactory.class inflated: org/apache/logging/log4j/core/config/PropertiesPlugin.class inflated: org/apache/logging/log4j/core/config/Property.class inflated: org/apache/logging/log4j/core/config/Reconfigurable.class inflated: org/apache/logging/log4j/core/config/ReliabilityStrategy.class inflated: org/apache/logging/log4j/core/config/ReliabilityStrategyFactory.class inflated: org/apache/logging/log4j/core/config/Scheduled.class inflated: org/apache/logging/log4j/core/config/ScriptsPlugin.class created: org/apache/logging/log4j/core/config/status/ inflated: org/apache/logging/log4j/core/config/status/StatusConfiguration$Verbosity.class inflated: org/apache/logging/log4j/core/config/status/StatusConfiguration.class created: org/apache/logging/log4j/core/config/xml/ inflated: org/apache/logging/log4j/core/config/xml/XmlConfiguration$ErrorType.class inflated: org/apache/logging/log4j/core/config/xml/XmlConfiguration$Status.class inflated: org/apache/logging/log4j/core/config/xml/XmlConfiguration.class inflated: org/apache/logging/log4j/core/config/xml/XmlConfigurationFactory.class created: org/apache/logging/log4j/core/config/yaml/ inflated: org/apache/logging/log4j/core/config/yaml/YamlConfiguration.class inflated: org/apache/logging/log4j/core/config/yaml/YamlConfigurationFactory.class inflated: org/apache/logging/log4j/core/ErrorHandler.class created: org/apache/logging/log4j/core/filter/ inflated: org/apache/logging/log4j/core/filter/AbstractFilter.class inflated: org/apache/logging/log4j/core/filter/AbstractFilterable.class inflated: org/apache/logging/log4j/core/filter/BurstFilter$1.class inflated: org/apache/logging/log4j/core/filter/BurstFilter$Builder.class inflated: org/apache/logging/log4j/core/filter/BurstFilter$LogDelay.class inflated: org/apache/logging/log4j/core/filter/BurstFilter.class inflated: org/apache/logging/log4j/core/filter/CompositeFilter.class inflated: org/apache/logging/log4j/core/filter/DynamicThresholdFilter.class inflated: org/apache/logging/log4j/core/filter/Filterable.class inflated: org/apache/logging/log4j/core/filter/LevelRangeFilter.class inflated: org/apache/logging/log4j/core/filter/MapFilter.class inflated: org/apache/logging/log4j/core/filter/MarkerFilter.class inflated: org/apache/logging/log4j/core/filter/RegexFilter$1.class inflated: org/apache/logging/log4j/core/filter/RegexFilter.class inflated: org/apache/logging/log4j/core/filter/ScriptFilter.class inflated: org/apache/logging/log4j/core/filter/StructuredDataFilter.class inflated: org/apache/logging/log4j/core/filter/ThreadContextMapFilter.class inflated: org/apache/logging/log4j/core/filter/ThresholdFilter.class inflated: org/apache/logging/log4j/core/filter/TimeFilter.class inflated: org/apache/logging/log4j/core/Filter$Result.class inflated: org/apache/logging/log4j/core/Filter.class created: org/apache/logging/log4j/core/impl/ inflated: org/apache/logging/log4j/core/impl/ContextAnchor.class inflated: org/apache/logging/log4j/core/impl/DefaultLogEventFactory.class inflated: org/apache/logging/log4j/core/impl/ExtendedClassInfo.class inflated: org/apache/logging/log4j/core/impl/ExtendedStackTraceElement.class inflated: org/apache/logging/log4j/core/impl/Log4jContextFactory.class inflated: org/apache/logging/log4j/core/impl/Log4jLogEvent$1.class inflated: org/apache/logging/log4j/core/impl/Log4jLogEvent$Builder.class inflated: org/apache/logging/log4j/core/impl/Log4jLogEvent$LogEventProxy.class inflated: org/apache/logging/log4j/core/impl/Log4jLogEvent.class inflated: org/apache/logging/log4j/core/impl/LogEventFactory.class inflated: org/apache/logging/log4j/core/impl/ThrowableFormatOptions.class inflated: org/apache/logging/log4j/core/impl/ThrowableProxy$CacheEntry.class inflated: org/apache/logging/log4j/core/impl/ThrowableProxy.class created: org/apache/logging/log4j/core/jackson/ inflated: org/apache/logging/log4j/core/jackson/ExtendedStackTraceElementMixIn.class inflated: org/apache/logging/log4j/core/jackson/Initializers$SetupContextInitializer.class inflated: org/apache/logging/log4j/core/jackson/Initializers$SimpleModuleInitializer.class inflated: org/apache/logging/log4j/core/jackson/Initializers.class inflated: org/apache/logging/log4j/core/jackson/JsonConstants.class inflated: org/apache/logging/log4j/core/jackson/LevelMixIn.class inflated: org/apache/logging/log4j/core/jackson/ListOfMapEntryDeserializer$1.class inflated: org/apache/logging/log4j/core/jackson/ListOfMapEntryDeserializer.class inflated: org/apache/logging/log4j/core/jackson/ListOfMapEntrySerializer.class inflated: org/apache/logging/log4j/core/jackson/Log4jJsonModule.class inflated: org/apache/logging/log4j/core/jackson/Log4jJsonObjectMapper.class inflated: org/apache/logging/log4j/core/jackson/Log4jStackTraceElementDeserializer.class inflated: org/apache/logging/log4j/core/jackson/Log4jXmlModule.class inflated: org/apache/logging/log4j/core/jackson/Log4jXmlObjectMapper.class inflated: org/apache/logging/log4j/core/jackson/LogEventMixIn.class inflated: org/apache/logging/log4j/core/jackson/MapEntry.class inflated: org/apache/logging/log4j/core/jackson/MarkerMixIn.class inflated: org/apache/logging/log4j/core/jackson/MessageSerializer.class inflated: org/apache/logging/log4j/core/jackson/MutableThreadContextStackDeserializer$1.class inflated: org/apache/logging/log4j/core/jackson/MutableThreadContextStackDeserializer.class inflated: org/apache/logging/log4j/core/jackson/SimpleMessageDeserializer.class inflated: org/apache/logging/log4j/core/jackson/StackTraceElementMixIn.class inflated: org/apache/logging/log4j/core/jackson/ThrowableProxyMixIn.class inflated: org/apache/logging/log4j/core/jackson/XmlConstants.class created: org/apache/logging/log4j/core/jmx/ inflated: org/apache/logging/log4j/core/jmx/AppenderAdmin.class inflated: org/apache/logging/log4j/core/jmx/AppenderAdminMBean.class inflated: org/apache/logging/log4j/core/jmx/AsyncAppenderAdmin.class inflated: org/apache/logging/log4j/core/jmx/AsyncAppenderAdminMBean.class inflated: org/apache/logging/log4j/core/jmx/ContextSelectorAdmin.class inflated: org/apache/logging/log4j/core/jmx/ContextSelectorAdminMBean.class inflated: org/apache/logging/log4j/core/jmx/LoggerConfigAdmin.class inflated: org/apache/logging/log4j/core/jmx/LoggerConfigAdminMBean.class inflated: org/apache/logging/log4j/core/jmx/LoggerContextAdmin.class inflated: org/apache/logging/log4j/core/jmx/LoggerContextAdminMBean.class inflated: org/apache/logging/log4j/core/jmx/RingBufferAdmin.class inflated: org/apache/logging/log4j/core/jmx/RingBufferAdminMBean.class inflated: org/apache/logging/log4j/core/jmx/Server.class inflated: org/apache/logging/log4j/core/jmx/StatusLoggerAdmin.class inflated: org/apache/logging/log4j/core/jmx/StatusLoggerAdminMBean.class created: org/apache/logging/log4j/core/layout/ inflated: org/apache/logging/log4j/core/layout/AbstractCsvLayout.class inflated: org/apache/logging/log4j/core/layout/AbstractJacksonLayout.class inflated: org/apache/logging/log4j/core/layout/AbstractLayout.class inflated: org/apache/logging/log4j/core/layout/AbstractStringLayout.class inflated: org/apache/logging/log4j/core/layout/CsvLogEventLayout.class inflated: org/apache/logging/log4j/core/layout/CsvParameterLayout.class inflated: org/apache/logging/log4j/core/layout/GelfLayout$1.class inflated: org/apache/logging/log4j/core/layout/GelfLayout$CompressionType$1.class inflated: org/apache/logging/log4j/core/layout/GelfLayout$CompressionType$2.class inflated: org/apache/logging/log4j/core/layout/GelfLayout$CompressionType$3.class inflated: org/apache/logging/log4j/core/layout/GelfLayout$CompressionType.class inflated: org/apache/logging/log4j/core/layout/GelfLayout.class inflated: org/apache/logging/log4j/core/layout/HtmlLayout$1.class inflated: org/apache/logging/log4j/core/layout/HtmlLayout$Builder.class inflated: org/apache/logging/log4j/core/layout/HtmlLayout$FontSize.class inflated: org/apache/logging/log4j/core/layout/HtmlLayout.class inflated: org/apache/logging/log4j/core/layout/JacksonFactory$JSON.class inflated: org/apache/logging/log4j/core/layout/JacksonFactory$XML.class inflated: org/apache/logging/log4j/core/layout/JacksonFactory.class inflated: org/apache/logging/log4j/core/layout/JsonLayout.class inflated: org/apache/logging/log4j/core/layout/LoggerFields.class inflated: org/apache/logging/log4j/core/layout/MarkerPatternSelector.class inflated: org/apache/logging/log4j/core/layout/PatternLayout$1.class inflated: org/apache/logging/log4j/core/layout/PatternLayout$Builder.class inflated: org/apache/logging/log4j/core/layout/PatternLayout$PatternSelectorSerializer.class inflated: org/apache/logging/log4j/core/layout/PatternLayout$PatternSerializer.class inflated: org/apache/logging/log4j/core/layout/PatternLayout$Serializer.class inflated: org/apache/logging/log4j/core/layout/PatternLayout.class inflated: org/apache/logging/log4j/core/layout/PatternMatch$Builder.class inflated: org/apache/logging/log4j/core/layout/PatternMatch.class inflated: org/apache/logging/log4j/core/layout/PatternSelector.class inflated: org/apache/logging/log4j/core/layout/Rfc5424Layout$1.class inflated: org/apache/logging/log4j/core/layout/Rfc5424Layout$ExcludeChecker.class inflated: org/apache/logging/log4j/core/layout/Rfc5424Layout$FieldFormatter.class inflated: org/apache/logging/log4j/core/layout/Rfc5424Layout$IncludeChecker.class inflated: org/apache/logging/log4j/core/layout/Rfc5424Layout$ListChecker.class inflated: org/apache/logging/log4j/core/layout/Rfc5424Layout$NoopChecker.class inflated: org/apache/logging/log4j/core/layout/Rfc5424Layout$StructuredDataElement.class inflated: org/apache/logging/log4j/core/layout/Rfc5424Layout.class inflated: org/apache/logging/log4j/core/layout/ScriptPatternSelector.class inflated: org/apache/logging/log4j/core/layout/SerializedLayout$PrivateObjectOutputStream.class inflated: org/apache/logging/log4j/core/layout/SerializedLayout.class inflated: org/apache/logging/log4j/core/layout/SyslogLayout.class inflated: org/apache/logging/log4j/core/layout/XmlLayout.class inflated: org/apache/logging/log4j/core/Layout.class inflated: org/apache/logging/log4j/core/LifeCycle$State.class inflated: org/apache/logging/log4j/core/LifeCycle.class inflated: org/apache/logging/log4j/core/LogEvent.class inflated: org/apache/logging/log4j/core/LogEventListener.class inflated: org/apache/logging/log4j/core/Logger$LoggerProxy.class inflated: org/apache/logging/log4j/core/Logger$PrivateConfig.class inflated: org/apache/logging/log4j/core/Logger.class inflated: org/apache/logging/log4j/core/LoggerContext$1.class inflated: org/apache/logging/log4j/core/LoggerContext.class created: org/apache/logging/log4j/core/lookup/ inflated: org/apache/logging/log4j/core/lookup/AbstractLookup.class inflated: org/apache/logging/log4j/core/lookup/ContextMapLookup.class inflated: org/apache/logging/log4j/core/lookup/DateLookup.class inflated: org/apache/logging/log4j/core/lookup/EnvironmentLookup.class inflated: org/apache/logging/log4j/core/lookup/Interpolator.class inflated: org/apache/logging/log4j/core/lookup/JavaLookup.class inflated: org/apache/logging/log4j/core/lookup/JmxRuntimeInputArgumentsLookup.class inflated: org/apache/logging/log4j/core/lookup/JndiLookup.class inflated: org/apache/logging/log4j/core/lookup/Log4jLookup.class inflated: org/apache/logging/log4j/core/lookup/MainMapLookup.class inflated: org/apache/logging/log4j/core/lookup/MapLookup.class inflated: org/apache/logging/log4j/core/lookup/MarkerLookup.class inflated: org/apache/logging/log4j/core/lookup/ResourceBundleLookup.class inflated: org/apache/logging/log4j/core/lookup/StrLookup.class inflated: org/apache/logging/log4j/core/lookup/StrMatcher$CharMatcher.class inflated: org/apache/logging/log4j/core/lookup/StrMatcher$CharSetMatcher.class inflated: org/apache/logging/log4j/core/lookup/StrMatcher$NoMatcher.class inflated: org/apache/logging/log4j/core/lookup/StrMatcher$StringMatcher.class inflated: org/apache/logging/log4j/core/lookup/StrMatcher$TrimMatcher.class inflated: org/apache/logging/log4j/core/lookup/StrMatcher.class inflated: org/apache/logging/log4j/core/lookup/StrSubstitutor.class inflated: org/apache/logging/log4j/core/lookup/StructuredDataLookup.class inflated: org/apache/logging/log4j/core/lookup/SystemPropertiesLookup.class created: org/apache/logging/log4j/core/net/ inflated: org/apache/logging/log4j/core/net/AbstractSocketManager.class inflated: org/apache/logging/log4j/core/net/Advertiser.class inflated: org/apache/logging/log4j/core/net/DatagramOutputStream.class inflated: org/apache/logging/log4j/core/net/DatagramSocketManager$1.class inflated: org/apache/logging/log4j/core/net/DatagramSocketManager$DatagramSocketManagerFactory.class inflated: org/apache/logging/log4j/core/net/DatagramSocketManager$FactoryData.class inflated: org/apache/logging/log4j/core/net/DatagramSocketManager.class inflated: org/apache/logging/log4j/core/net/Facility.class inflated: org/apache/logging/log4j/core/net/JndiManager$1.class inflated: org/apache/logging/log4j/core/net/JndiManager$JndiManagerFactory.class inflated: org/apache/logging/log4j/core/net/JndiManager.class inflated: org/apache/logging/log4j/core/net/MimeMessageBuilder.class created: org/apache/logging/log4j/core/net/mom/ created: org/apache/logging/log4j/core/net/mom/jms/ inflated: org/apache/logging/log4j/core/net/mom/jms/JmsQueueReceiver.class inflated: org/apache/logging/log4j/core/net/mom/jms/JmsTopicReceiver.class inflated: org/apache/logging/log4j/core/net/MulticastDnsAdvertiser.class inflated: org/apache/logging/log4j/core/net/Priority.class inflated: org/apache/logging/log4j/core/net/Protocol.class created: org/apache/logging/log4j/core/net/server/ inflated: org/apache/logging/log4j/core/net/server/AbstractLogEventBridge.class inflated: org/apache/logging/log4j/core/net/server/AbstractSocketServer$ServerConfigurationFactory.class inflated: org/apache/logging/log4j/core/net/server/AbstractSocketServer.class inflated: org/apache/logging/log4j/core/net/server/InputStreamLogEventBridge.class inflated: org/apache/logging/log4j/core/net/server/JmsServer.class inflated: org/apache/logging/log4j/core/net/server/JsonInputStreamLogEventBridge.class inflated: org/apache/logging/log4j/core/net/server/LogEventBridge.class inflated: org/apache/logging/log4j/core/net/server/ObjectInputStreamLogEventBridge.class inflated: org/apache/logging/log4j/core/net/server/SecureTcpSocketServer.class inflated: 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inflated: org/apache/logging/log4j/core/net/ssl/KeyStoreConfigurationException.class inflated: org/apache/logging/log4j/core/net/ssl/SslConfiguration.class inflated: org/apache/logging/log4j/core/net/ssl/SslConfigurationDefaults.class inflated: org/apache/logging/log4j/core/net/ssl/SslConfigurationException.class inflated: org/apache/logging/log4j/core/net/ssl/StoreConfiguration.class inflated: org/apache/logging/log4j/core/net/ssl/StoreConfigurationException.class inflated: org/apache/logging/log4j/core/net/ssl/TrustStoreConfiguration.class inflated: org/apache/logging/log4j/core/net/ssl/TrustStoreConfigurationException.class inflated: org/apache/logging/log4j/core/net/SslSocketManager$1.class inflated: org/apache/logging/log4j/core/net/SslSocketManager$SslFactoryData.class inflated: org/apache/logging/log4j/core/net/SslSocketManager$SslSocketManagerFactory$TlsSocketManagerFactoryException.class inflated: org/apache/logging/log4j/core/net/SslSocketManager$SslSocketManagerFactory.class inflated: org/apache/logging/log4j/core/net/SslSocketManager.class inflated: org/apache/logging/log4j/core/net/TcpSocketManager$FactoryData.class inflated: org/apache/logging/log4j/core/net/TcpSocketManager$Reconnector.class inflated: org/apache/logging/log4j/core/net/TcpSocketManager$TcpSocketManagerFactory.class inflated: org/apache/logging/log4j/core/net/TcpSocketManager.class created: org/apache/logging/log4j/core/osgi/ inflated: org/apache/logging/log4j/core/osgi/Activator.class inflated: org/apache/logging/log4j/core/osgi/BundleContextSelector.class created: org/apache/logging/log4j/core/pattern/ inflated: org/apache/logging/log4j/core/pattern/AbstractPatternConverter.class inflated: org/apache/logging/log4j/core/pattern/AbstractStyleNameConverter$Black.class inflated: org/apache/logging/log4j/core/pattern/AbstractStyleNameConverter$Blue.class inflated: org/apache/logging/log4j/core/pattern/AbstractStyleNameConverter$Cyan.class inflated: 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org/apache/logging/log4j/core/pattern/DatePatternConverter$1.class inflated: org/apache/logging/log4j/core/pattern/DatePatternConverter$CachedTime.class inflated: org/apache/logging/log4j/core/pattern/DatePatternConverter$FixedFormatter.class inflated: org/apache/logging/log4j/core/pattern/DatePatternConverter$Formatter.class inflated: org/apache/logging/log4j/core/pattern/DatePatternConverter$PatternFormatter.class inflated: org/apache/logging/log4j/core/pattern/DatePatternConverter$UnixFormatter.class inflated: org/apache/logging/log4j/core/pattern/DatePatternConverter$UnixMillisFormatter.class inflated: org/apache/logging/log4j/core/pattern/DatePatternConverter.class inflated: org/apache/logging/log4j/core/pattern/EncodingPatternConverter.class inflated: org/apache/logging/log4j/core/pattern/EqualsIgnoreCaseReplacementConverter.class inflated: org/apache/logging/log4j/core/pattern/EqualsReplacementConverter.class inflated: org/apache/logging/log4j/core/pattern/ExtendedThrowablePatternConverter.class inflated: org/apache/logging/log4j/core/pattern/FileDatePatternConverter.class inflated: org/apache/logging/log4j/core/pattern/FileLocationPatternConverter.class inflated: org/apache/logging/log4j/core/pattern/FormattingInfo.class inflated: org/apache/logging/log4j/core/pattern/FullLocationPatternConverter.class inflated: org/apache/logging/log4j/core/pattern/HighlightConverter.class inflated: org/apache/logging/log4j/core/pattern/IntegerPatternConverter.class inflated: org/apache/logging/log4j/core/pattern/LevelPatternConverter.class inflated: org/apache/logging/log4j/core/pattern/LineLocationPatternConverter.class inflated: org/apache/logging/log4j/core/pattern/LineSeparatorPatternConverter.class inflated: org/apache/logging/log4j/core/pattern/LiteralPatternConverter.class inflated: org/apache/logging/log4j/core/pattern/LogEventPatternConverter.class inflated: org/apache/logging/log4j/core/pattern/LoggerPatternConverter.class inflated: org/apache/logging/log4j/core/pattern/MapPatternConverter.class inflated: org/apache/logging/log4j/core/pattern/MarkerPatternConverter.class inflated: org/apache/logging/log4j/core/pattern/MarkerSimpleNamePatternConverter.class inflated: org/apache/logging/log4j/core/pattern/MdcPatternConverter.class inflated: org/apache/logging/log4j/core/pattern/MessagePatternConverter.class inflated: org/apache/logging/log4j/core/pattern/MethodLocationPatternConverter.class inflated: org/apache/logging/log4j/core/pattern/NameAbbreviator$MaxElementAbbreviator.class inflated: org/apache/logging/log4j/core/pattern/NameAbbreviator$NOPAbbreviator.class inflated: org/apache/logging/log4j/core/pattern/NameAbbreviator$PatternAbbreviator.class inflated: org/apache/logging/log4j/core/pattern/NameAbbreviator$PatternAbbreviatorFragment.class inflated: org/apache/logging/log4j/core/pattern/NameAbbreviator.class inflated: org/apache/logging/log4j/core/pattern/NamePatternConverter.class inflated: org/apache/logging/log4j/core/pattern/NanoTimePatternConverter.class inflated: org/apache/logging/log4j/core/pattern/NdcPatternConverter.class inflated: org/apache/logging/log4j/core/pattern/PatternConverter.class inflated: org/apache/logging/log4j/core/pattern/PatternFormatter.class inflated: org/apache/logging/log4j/core/pattern/PatternParser$1.class inflated: org/apache/logging/log4j/core/pattern/PatternParser$ParserState.class inflated: org/apache/logging/log4j/core/pattern/PatternParser.class inflated: org/apache/logging/log4j/core/pattern/RegexReplacement.class inflated: org/apache/logging/log4j/core/pattern/RegexReplacementConverter.class inflated: org/apache/logging/log4j/core/pattern/RelativeTimePatternConverter.class inflated: org/apache/logging/log4j/core/pattern/RootThrowablePatternConverter.class inflated: org/apache/logging/log4j/core/pattern/SequenceNumberPatternConverter.class inflated: org/apache/logging/log4j/core/pattern/StyleConverter.class inflated: org/apache/logging/log4j/core/pattern/ThreadPatternConverter.class inflated: org/apache/logging/log4j/core/pattern/ThrowablePatternConverter.class inflated: org/apache/logging/log4j/core/pattern/UuidPatternConverter.class inflated: org/apache/logging/log4j/core/pattern/VariablesNotEmptyReplacementConverter.class created: org/apache/logging/log4j/core/script/ inflated: org/apache/logging/log4j/core/script/AbstractScript.class inflated: org/apache/logging/log4j/core/script/Script.class inflated: org/apache/logging/log4j/core/script/ScriptFile.class inflated: org/apache/logging/log4j/core/script/ScriptManager$1.class inflated: org/apache/logging/log4j/core/script/ScriptManager$MainScriptRunner$1.class inflated: org/apache/logging/log4j/core/script/ScriptManager$MainScriptRunner.class inflated: org/apache/logging/log4j/core/script/ScriptManager$ScriptRunner.class inflated: org/apache/logging/log4j/core/script/ScriptManager$ThreadLocalScriptRunner$1.class inflated: org/apache/logging/log4j/core/script/ScriptManager$ThreadLocalScriptRunner.class inflated: org/apache/logging/log4j/core/script/ScriptManager.class inflated: org/apache/logging/log4j/core/script/ScriptRef.class created: org/apache/logging/log4j/core/selector/ inflated: org/apache/logging/log4j/core/selector/BasicContextSelector.class inflated: org/apache/logging/log4j/core/selector/ClassLoaderContextSelector.class inflated: org/apache/logging/log4j/core/selector/ContextSelector.class inflated: org/apache/logging/log4j/core/selector/JndiContextSelector.class inflated: org/apache/logging/log4j/core/selector/NamedContextSelector.class inflated: org/apache/logging/log4j/core/StringLayout.class created: org/apache/logging/log4j/core/tools/ inflated: org/apache/logging/log4j/core/tools/Generate$1.class inflated: org/apache/logging/log4j/core/tools/Generate$CustomLogger.class inflated: org/apache/logging/log4j/core/tools/Generate$ExtendedLogger.class inflated: org/apache/logging/log4j/core/tools/Generate$LevelInfo.class inflated: org/apache/logging/log4j/core/tools/Generate$Type$1.class inflated: org/apache/logging/log4j/core/tools/Generate$Type$2.class inflated: org/apache/logging/log4j/core/tools/Generate$Type.class inflated: org/apache/logging/log4j/core/tools/Generate.class created: org/apache/logging/log4j/core/util/ inflated: org/apache/logging/log4j/core/util/Assert.class inflated: org/apache/logging/log4j/core/util/Booleans.class inflated: org/apache/logging/log4j/core/util/Builder.class inflated: org/apache/logging/log4j/core/util/CachedClock$1.class inflated: org/apache/logging/log4j/core/util/CachedClock.class inflated: org/apache/logging/log4j/core/util/Cancellable.class inflated: org/apache/logging/log4j/core/util/Clock.class inflated: org/apache/logging/log4j/core/util/ClockFactory.class inflated: org/apache/logging/log4j/core/util/Closer.class inflated: org/apache/logging/log4j/core/util/CloseShieldOutputStream.class inflated: org/apache/logging/log4j/core/util/CloseShieldWriter.class inflated: org/apache/logging/log4j/core/util/CoarseCachedClock$1.class inflated: org/apache/logging/log4j/core/util/CoarseCachedClock.class inflated: org/apache/logging/log4j/core/util/Constants.class inflated: org/apache/logging/log4j/core/util/CronExpression$1.class inflated: org/apache/logging/log4j/core/util/CronExpression$ValueSet.class inflated: org/apache/logging/log4j/core/util/CronExpression.class inflated: org/apache/logging/log4j/core/util/CyclicBuffer.class created: org/apache/logging/log4j/core/util/datetime/ inflated: org/apache/logging/log4j/core/util/datetime/DateParser.class inflated: org/apache/logging/log4j/core/util/datetime/DatePrinter.class inflated: org/apache/logging/log4j/core/util/datetime/FastDateFormat$1.class inflated: org/apache/logging/log4j/core/util/datetime/FastDateFormat.class inflated: org/apache/logging/log4j/core/util/datetime/FastDateParser$1.class inflated: org/apache/logging/log4j/core/util/datetime/FastDateParser$2.class inflated: org/apache/logging/log4j/core/util/datetime/FastDateParser$3.class inflated: org/apache/logging/log4j/core/util/datetime/FastDateParser$4.class inflated: org/apache/logging/log4j/core/util/datetime/FastDateParser$CaseInsensitiveTextStrategy.class inflated: org/apache/logging/log4j/core/util/datetime/FastDateParser$CopyQuotedStrategy.class inflated: org/apache/logging/log4j/core/util/datetime/FastDateParser$ISO8601TimeZoneStrategy.class inflated: org/apache/logging/log4j/core/util/datetime/FastDateParser$NumberStrategy.class inflated: org/apache/logging/log4j/core/util/datetime/FastDateParser$Strategy.class inflated: org/apache/logging/log4j/core/util/datetime/FastDateParser$TimeZoneStrategy.class inflated: org/apache/logging/log4j/core/util/datetime/FastDateParser.class inflated: org/apache/logging/log4j/core/util/datetime/FastDatePrinter$CharacterLiteral.class inflated: org/apache/logging/log4j/core/util/datetime/FastDatePrinter$Iso8601_Rule.class inflated: org/apache/logging/log4j/core/util/datetime/FastDatePrinter$NumberRule.class inflated: org/apache/logging/log4j/core/util/datetime/FastDatePrinter$PaddedNumberField.class inflated: org/apache/logging/log4j/core/util/datetime/FastDatePrinter$Rule.class inflated: org/apache/logging/log4j/core/util/datetime/FastDatePrinter$StringLiteral.class inflated: org/apache/logging/log4j/core/util/datetime/FastDatePrinter$TextField.class inflated: org/apache/logging/log4j/core/util/datetime/FastDatePrinter$TimeZoneDisplayKey.class inflated: org/apache/logging/log4j/core/util/datetime/FastDatePrinter$TimeZoneNameRule.class inflated: org/apache/logging/log4j/core/util/datetime/FastDatePrinter$TimeZoneNumberRule.class inflated: org/apache/logging/log4j/core/util/datetime/FastDatePrinter$TwelveHourField.class inflated: org/apache/logging/log4j/core/util/datetime/FastDatePrinter$TwentyFourHourField.class inflated: org/apache/logging/log4j/core/util/datetime/FastDatePrinter$TwoDigitMonthField.class inflated: org/apache/logging/log4j/core/util/datetime/FastDatePrinter$TwoDigitNumberField.class inflated: org/apache/logging/log4j/core/util/datetime/FastDatePrinter$TwoDigitYearField.class inflated: org/apache/logging/log4j/core/util/datetime/FastDatePrinter$UnpaddedMonthField.class inflated: org/apache/logging/log4j/core/util/datetime/FastDatePrinter$UnpaddedNumberField.class inflated: org/apache/logging/log4j/core/util/datetime/FastDatePrinter.class inflated: org/apache/logging/log4j/core/util/datetime/FixedDateFormat$FixedFormat.class inflated: org/apache/logging/log4j/core/util/datetime/FixedDateFormat.class inflated: org/apache/logging/log4j/core/util/datetime/Format.class inflated: org/apache/logging/log4j/core/util/datetime/FormatCache$MultipartKey.class inflated: org/apache/logging/log4j/core/util/datetime/FormatCache.class inflated: org/apache/logging/log4j/core/util/DefaultShutdownCallbackRegistry$1.class inflated: org/apache/logging/log4j/core/util/DefaultShutdownCallbackRegistry.class inflated: org/apache/logging/log4j/core/util/DummyNanoClock.class inflated: org/apache/logging/log4j/core/util/ExtensionLanguageMapping.class inflated: org/apache/logging/log4j/core/util/FileUtils.class inflated: org/apache/logging/log4j/core/util/FileWatcher.class inflated: org/apache/logging/log4j/core/util/Integers.class inflated: org/apache/logging/log4j/core/util/IOUtils.class inflated: org/apache/logging/log4j/core/util/JndiCloser.class inflated: org/apache/logging/log4j/core/util/KeyValuePair$Builder.class inflated: org/apache/logging/log4j/core/util/KeyValuePair.class inflated: org/apache/logging/log4j/core/util/Loader.class inflated: org/apache/logging/log4j/core/util/Log4jThread.class inflated: org/apache/logging/log4j/core/util/NameUtil.class inflated: org/apache/logging/log4j/core/util/NanoClock.class inflated: org/apache/logging/log4j/core/util/NanoClockFactory$1.class inflated: org/apache/logging/log4j/core/util/NanoClockFactory$Mode$1.class inflated: org/apache/logging/log4j/core/util/NanoClockFactory$Mode$2.class inflated: org/apache/logging/log4j/core/util/NanoClockFactory$Mode.class inflated: org/apache/logging/log4j/core/util/NanoClockFactory.class inflated: org/apache/logging/log4j/core/util/NetUtils.class inflated: org/apache/logging/log4j/core/util/NullOutputStream.class inflated: org/apache/logging/log4j/core/util/OptionConverter.class inflated: org/apache/logging/log4j/core/util/Patterns.class inflated: org/apache/logging/log4j/core/util/ReflectionUtil.class inflated: org/apache/logging/log4j/core/util/SecretKeyProvider.class inflated: org/apache/logging/log4j/core/util/SetUtils.class inflated: org/apache/logging/log4j/core/util/ShutdownCallbackRegistry.class inflated: org/apache/logging/log4j/core/util/StringBuilderWriter.class inflated: org/apache/logging/log4j/core/util/StringEncoder.class inflated: org/apache/logging/log4j/core/util/SystemClock.class inflated: org/apache/logging/log4j/core/util/SystemNanoClock.class inflated: org/apache/logging/log4j/core/util/Throwables.class inflated: org/apache/logging/log4j/core/util/Transform.class inflated: org/apache/logging/log4j/core/util/TypeUtil.class inflated: org/apache/logging/log4j/core/util/UuidUtil.class inflated: org/apache/logging/log4j/core/util/WatchManager$1.class inflated: org/apache/logging/log4j/core/util/WatchManager$FileMonitor.class inflated: org/apache/logging/log4j/core/util/WatchManager$WatchWorker.class inflated: org/apache/logging/log4j/core/util/WatchManager.class created: META-INF/maven/org.apache.logging.log4j/log4j-core/ inflated: META-INF/maven/org.apache.logging.log4j/log4j-core/pom.xml inflated: META-INF/maven/org.apache.logging.log4j/log4j-core/pom.properties inflated: META-INF/services/javax.script.ScriptEngineFactory created: org/apache/commons/jexl2/ inflated: org/apache/commons/jexl2/Debugger.class inflated: org/apache/commons/jexl2/DebugInfo.class inflated: org/apache/commons/jexl2/Expression.class inflated: org/apache/commons/jexl2/ExpressionImpl$1.class inflated: org/apache/commons/jexl2/ExpressionImpl.class created: org/apache/commons/jexl2/internal/ inflated: org/apache/commons/jexl2/internal/AbstractExecutor$1.class inflated: org/apache/commons/jexl2/internal/AbstractExecutor$Get.class inflated: org/apache/commons/jexl2/internal/AbstractExecutor$Method$Parameter.class inflated: org/apache/commons/jexl2/internal/AbstractExecutor$Method.class inflated: org/apache/commons/jexl2/internal/AbstractExecutor$Set.class inflated: org/apache/commons/jexl2/internal/AbstractExecutor.class inflated: org/apache/commons/jexl2/internal/ArrayIterator.class inflated: org/apache/commons/jexl2/internal/ArrayListWrapper.class inflated: org/apache/commons/jexl2/internal/BooleanGetExecutor.class inflated: org/apache/commons/jexl2/internal/DuckGetExecutor.class inflated: org/apache/commons/jexl2/internal/DuckSetExecutor.class inflated: org/apache/commons/jexl2/internal/EnumerationIterator.class created: org/apache/commons/jexl2/internal/introspection/ inflated: org/apache/commons/jexl2/internal/introspection/ClassMap$MethodCache.class inflated: org/apache/commons/jexl2/internal/introspection/ClassMap.class inflated: org/apache/commons/jexl2/internal/introspection/IntrospectorBase$CacheMiss.class inflated: org/apache/commons/jexl2/internal/introspection/IntrospectorBase.class inflated: org/apache/commons/jexl2/internal/introspection/MethodKey$1.class inflated: org/apache/commons/jexl2/internal/introspection/MethodKey$2.class inflated: org/apache/commons/jexl2/internal/introspection/MethodKey$AmbiguousException.class inflated: org/apache/commons/jexl2/internal/introspection/MethodKey$Parameters.class inflated: 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inflated: org/apache/commons/jexl2/parser/JexlNode.class inflated: org/apache/commons/jexl2/parser/JexlParser.class inflated: org/apache/commons/jexl2/parser/JJTParserState.class inflated: org/apache/commons/jexl2/parser/Node.class inflated: org/apache/commons/jexl2/parser/ParseException.class inflated: org/apache/commons/jexl2/parser/Parser$1.class inflated: org/apache/commons/jexl2/parser/Parser$JJCalls.class inflated: org/apache/commons/jexl2/parser/Parser$LookaheadSuccess.class inflated: org/apache/commons/jexl2/parser/Parser.class inflated: org/apache/commons/jexl2/parser/ParserConstants.class inflated: org/apache/commons/jexl2/parser/ParserTokenManager.class inflated: org/apache/commons/jexl2/parser/ParserTreeConstants.class inflated: org/apache/commons/jexl2/parser/ParserVisitor.class inflated: org/apache/commons/jexl2/parser/SimpleCharStream.class inflated: org/apache/commons/jexl2/parser/SimpleNode.class inflated: org/apache/commons/jexl2/parser/StringParser.class inflated: org/apache/commons/jexl2/parser/Token.class inflated: org/apache/commons/jexl2/parser/TokenMgrError.class inflated: org/apache/commons/jexl2/ReadonlyContext.class inflated: org/apache/commons/jexl2/Script.class created: org/apache/commons/jexl2/scripting/ inflated: org/apache/commons/jexl2/scripting/JexlScriptEngine$1.class inflated: org/apache/commons/jexl2/scripting/JexlScriptEngine$EngineSingletonHolder$1.class inflated: org/apache/commons/jexl2/scripting/JexlScriptEngine$EngineSingletonHolder.class inflated: org/apache/commons/jexl2/scripting/JexlScriptEngine$FactorySingletonHolder.class inflated: org/apache/commons/jexl2/scripting/JexlScriptEngine$JexlCompiledScript.class inflated: org/apache/commons/jexl2/scripting/JexlScriptEngine$JexlContextWrapper.class inflated: org/apache/commons/jexl2/scripting/JexlScriptEngine$JexlScriptObject.class inflated: org/apache/commons/jexl2/scripting/JexlScriptEngine.class inflated: org/apache/commons/jexl2/scripting/JexlScriptEngineFactory.class inflated: org/apache/commons/jexl2/scripting/Main.class inflated: org/apache/commons/jexl2/UnifiedJEXL$1.class inflated: org/apache/commons/jexl2/UnifiedJEXL$BlockType.class inflated: org/apache/commons/jexl2/UnifiedJEXL$CompositeExpression.class inflated: org/apache/commons/jexl2/UnifiedJEXL$ConstantExpression.class inflated: org/apache/commons/jexl2/UnifiedJEXL$DeferredExpression.class inflated: org/apache/commons/jexl2/UnifiedJEXL$Exception.class inflated: org/apache/commons/jexl2/UnifiedJEXL$Expression.class inflated: org/apache/commons/jexl2/UnifiedJEXL$ExpressionBuilder.class inflated: org/apache/commons/jexl2/UnifiedJEXL$ExpressionType.class inflated: org/apache/commons/jexl2/UnifiedJEXL$ImmediateExpression.class inflated: org/apache/commons/jexl2/UnifiedJEXL$JexlBasedExpression.class inflated: org/apache/commons/jexl2/UnifiedJEXL$NestedExpression.class inflated: org/apache/commons/jexl2/UnifiedJEXL$ParseState.class inflated: org/apache/commons/jexl2/UnifiedJEXL$Template.class inflated: org/apache/commons/jexl2/UnifiedJEXL$TemplateBlock.class inflated: org/apache/commons/jexl2/UnifiedJEXL$TemplateContext.class inflated: org/apache/commons/jexl2/UnifiedJEXL.class created: META-INF/maven/org.apache.commons/ created: META-INF/maven/org.apache.commons/commons-jexl/ inflated: META-INF/maven/org.apache.commons/commons-jexl/pom.xml inflated: META-INF/maven/org.apache.commons/commons-jexl/pom.properties created: org/apache/commons/logging/ created: org/apache/commons/logging/impl/ inflated: org/apache/commons/logging/impl/AvalonLogger.class inflated: org/apache/commons/logging/impl/Jdk13LumberjackLogger.class inflated: org/apache/commons/logging/impl/Jdk14Logger.class inflated: org/apache/commons/logging/impl/Log4JLogger.class inflated: org/apache/commons/logging/impl/LogFactoryImpl$1.class inflated: org/apache/commons/logging/impl/LogFactoryImpl$2.class inflated: org/apache/commons/logging/impl/LogFactoryImpl$3.class inflated: org/apache/commons/logging/impl/LogFactoryImpl.class inflated: org/apache/commons/logging/impl/LogKitLogger.class inflated: org/apache/commons/logging/impl/NoOpLog.class inflated: org/apache/commons/logging/impl/ServletContextCleaner.class inflated: org/apache/commons/logging/impl/SimpleLog$1.class inflated: org/apache/commons/logging/impl/SimpleLog.class inflated: org/apache/commons/logging/impl/WeakHashtable$1.class inflated: org/apache/commons/logging/impl/WeakHashtable$Entry.class inflated: org/apache/commons/logging/impl/WeakHashtable$Referenced.class inflated: org/apache/commons/logging/impl/WeakHashtable$WeakKey.class inflated: org/apache/commons/logging/impl/WeakHashtable.class inflated: org/apache/commons/logging/Log.class inflated: org/apache/commons/logging/LogConfigurationException.class inflated: org/apache/commons/logging/LogFactory$1.class inflated: org/apache/commons/logging/LogFactory$2.class inflated: org/apache/commons/logging/LogFactory$3.class inflated: org/apache/commons/logging/LogFactory$4.class inflated: org/apache/commons/logging/LogFactory$5.class inflated: org/apache/commons/logging/LogFactory$6.class inflated: org/apache/commons/logging/LogFactory.class inflated: org/apache/commons/logging/LogSource.class created: META-INF/maven/commons-logging/ created: META-INF/maven/commons-logging/commons-logging/ inflated: META-INF/maven/commons-logging/commons-logging/pom.xml inflated: META-INF/maven/commons-logging/commons-logging/pom.properties created: org/xerial/ created: org/xerial/snappy/ inflated: org/xerial/snappy/BitShuffle.class inflated: org/xerial/snappy/BitShuffleNative.class inflated: org/xerial/snappy/BitShuffleType.class inflated: org/xerial/snappy/OSInfo.class inflated: org/xerial/snappy/PureJavaCrc32C.class inflated: org/xerial/snappy/Snappy.class inflated: org/xerial/snappy/SnappyBundleActivator.class inflated: org/xerial/snappy/SnappyCodec.class inflated: org/xerial/snappy/SnappyError.class inflated: org/xerial/snappy/SnappyErrorCode.class inflated: org/xerial/snappy/SnappyException.class inflated: org/xerial/snappy/SnappyFramed.class inflated: org/xerial/snappy/SnappyFramedInputStream$FrameAction.class inflated: org/xerial/snappy/SnappyFramedInputStream$FrameData.class inflated: org/xerial/snappy/SnappyFramedInputStream$FrameMetaData.class inflated: org/xerial/snappy/SnappyFramedInputStream.class inflated: org/xerial/snappy/SnappyFramedOutputStream.class inflated: org/xerial/snappy/SnappyIOException.class inflated: org/xerial/snappy/SnappyInputStream.class inflated: org/xerial/snappy/SnappyLoader.class inflated: org/xerial/snappy/SnappyNative.class inflated: org/xerial/snappy/SnappyOutputStream.class inflated: org/xerial/snappy/VERSION created: org/xerial/snappy/buffer/ inflated: org/xerial/snappy/buffer/BufferAllocator.class inflated: org/xerial/snappy/buffer/BufferAllocatorFactory.class inflated: org/xerial/snappy/buffer/CachedBufferAllocator$1.class inflated: 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org/xerial/snappy/native/Mac/x86_64/ inflated: org/xerial/snappy/native/Mac/x86_64/libsnappyjava.jnilib inflated: org/xerial/snappy/native/README created: org/xerial/snappy/native/SunOS/ created: org/xerial/snappy/native/SunOS/sparc/ inflated: org/xerial/snappy/native/SunOS/sparc/libsnappyjava.so created: org/xerial/snappy/native/SunOS/x86/ inflated: org/xerial/snappy/native/SunOS/x86/libsnappyjava.so created: org/xerial/snappy/native/SunOS/x86_64/ inflated: org/xerial/snappy/native/SunOS/x86_64/libsnappyjava.so created: org/xerial/snappy/native/Windows/ created: org/xerial/snappy/native/Windows/x86/ inflated: org/xerial/snappy/native/Windows/x86/snappyjava.dll created: org/xerial/snappy/native/Windows/x86_64/ inflated: org/xerial/snappy/native/Windows/x86_64/snappyjava.dll created: org/apache/commons/compress/ created: org/apache/commons/compress/archivers/ inflated: org/apache/commons/compress/archivers/Lister.class inflated: 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created: org/apache/commons/compress/archivers/zip/ inflated: org/apache/commons/compress/archivers/zip/UnixStat.class inflated: org/apache/commons/compress/archivers/zip/AbstractUnicodeExtraField.class inflated: org/apache/commons/compress/archivers/zip/UnicodeCommentExtraField.class inflated: org/apache/commons/compress/archivers/zip/ZipExtraField.class inflated: org/apache/commons/compress/archivers/zip/ZipArchiveOutputStream.class inflated: org/apache/commons/compress/archivers/zip/Zip64Mode.class inflated: org/apache/commons/compress/archivers/zip/ZipEncoding.class inflated: org/apache/commons/compress/archivers/zip/ExtraFieldUtils$UnparseableExtraField.class inflated: org/apache/commons/compress/archivers/zip/ZipArchiveInputStream$1.class inflated: org/apache/commons/compress/archivers/zip/UnsupportedZipFeatureException$Feature.class inflated: org/apache/commons/compress/archivers/zip/ZipEightByteInteger.class inflated: org/apache/commons/compress/archivers/zip/ZipConstants.class 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org/apache/commons/compress/archivers/zip/ZipArchiveOutputStream$CurrentEntry.class inflated: org/apache/commons/compress/archivers/zip/ZipArchiveInputStream.class inflated: org/apache/commons/compress/archivers/zip/AsiExtraField.class inflated: org/apache/commons/compress/archivers/zip/ZipEncodingHelper$SimpleEncodingHolder.class inflated: org/apache/commons/compress/archivers/zip/UnsupportedZipFeatureException.class inflated: org/apache/commons/compress/archivers/zip/UnparseableExtraFieldData.class inflated: org/apache/commons/compress/archivers/zip/FallbackZipEncoding.class inflated: org/apache/commons/compress/archivers/zip/Simple8BitZipEncoding.class created: org/apache/commons/compress/archivers/ar/ inflated: org/apache/commons/compress/archivers/ar/ArArchiveEntry.class inflated: org/apache/commons/compress/archivers/ar/ArArchiveInputStream.class inflated: org/apache/commons/compress/archivers/ar/ArArchiveOutputStream.class inflated: 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org/apache/commons/compress/archivers/dump/DumpArchiveInputStream.class inflated: org/apache/commons/compress/archivers/dump/DumpArchiveEntry$TYPE.class inflated: org/apache/commons/compress/archivers/dump/DumpArchiveConstants.class inflated: org/apache/commons/compress/archivers/dump/DumpArchiveEntry$PERMISSION.class inflated: org/apache/commons/compress/archivers/dump/TapeInputStream$1.class inflated: org/apache/commons/compress/archivers/dump/TapeInputStream.class inflated: org/apache/commons/compress/archivers/dump/ShortFileException.class inflated: org/apache/commons/compress/archivers/dump/DumpArchiveEntry$TapeSegmentHeader.class inflated: org/apache/commons/compress/archivers/dump/DumpArchiveConstants$SEGMENT_TYPE.class created: org/apache/commons/compress/archivers/tar/ inflated: org/apache/commons/compress/archivers/tar/TarUtils$1.class inflated: org/apache/commons/compress/archivers/tar/TarArchiveOutputStream.class inflated: 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joptsimple/OptionSet.class inflated: joptsimple/OptionSpec.class inflated: joptsimple/OptionSpecBuilder.class inflated: joptsimple/OptionSpecTokenizer.class inflated: joptsimple/OptionalArgumentOptionSpec.class inflated: joptsimple/ParserRules.class inflated: joptsimple/RequiredArgumentOptionSpec.class inflated: joptsimple/UnavailableOptionException.class inflated: joptsimple/UnconfiguredOptionException.class inflated: joptsimple/UnrecognizedOptionException.class inflated: joptsimple/ValueConversionException.class inflated: joptsimple/ValueConverter.class created: joptsimple/internal/ inflated: joptsimple/internal/AbbreviationMap.class inflated: joptsimple/internal/Classes.class inflated: joptsimple/internal/Columns.class inflated: joptsimple/internal/ConstructorInvokingValueConverter.class inflated: joptsimple/internal/Messages.class inflated: joptsimple/internal/MethodInvokingValueConverter.class inflated: joptsimple/internal/OptionNameMap.class inflated: joptsimple/internal/Reflection.class inflated: joptsimple/internal/ReflectionException.class inflated: joptsimple/internal/Row.class inflated: joptsimple/internal/Rows.class inflated: joptsimple/internal/SimpleOptionNameMap.class inflated: joptsimple/internal/Strings.class created: joptsimple/util/ inflated: joptsimple/util/DateConverter.class inflated: joptsimple/util/EnumConverter.class inflated: joptsimple/util/InetAddressConverter.class inflated: joptsimple/util/KeyValuePair.class inflated: joptsimple/util/PathConverter.class inflated: joptsimple/util/PathProperties$1.class inflated: joptsimple/util/PathProperties$2.class inflated: joptsimple/util/PathProperties$3.class inflated: joptsimple/util/PathProperties$4.class inflated: joptsimple/util/PathProperties$5.class inflated: joptsimple/util/PathProperties$6.class inflated: joptsimple/util/PathProperties.class inflated: joptsimple/util/RegexMatcher.class created: org/apache/commons/lang3/ inflated: 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com/google/gson/reflect/TypeToken.class inflated: com/google/gson/LongSerializationPolicy$1.class inflated: com/google/gson/TypeAdapter$1.class inflated: com/google/gson/GsonBuilder.class inflated: picard/picardCmdLine.properties find jar_build/build -name '*.java' -print | xargs rm -f find jar_build/build -name '.svn' -print | xargs rm -rf find jar_build/build -name '*.DS_Store' -print | xargs rm -rf cd jar_build/build; \ rm -rf META-INF/MANIFEST.MF; \ echo "Main-Class: uk.ac.sanger.artemis.components.ArtemisMain" > manifest-art; \ echo "Permissions: all-permissions" >> manifest-art; \ jar cmf manifest-art ../artemis.jar META-INF/services images/Wellcome_Sanger_Institute_Logo_Landscape_Digital_RGB_Full_Colour.jpg images/icon.gif README.md etc \ artemis_sqlmap org uk com net htsjdk picard gov joptsimple ngs freemarker LICENSE.Apache LICENSE.Picard LICENSE.JDBC LICENSE j2ssh.properties; \ echo "Main-Class: uk.ac.sanger.artemis.circular.DNADraw" > manifest-circular; \ echo "Permissions: all-permissions" >> manifest-circular; \ jar cmf manifest-circular ../dnaplotter.jar images/Wellcome_Sanger_Institute_Logo_Landscape_Digital_RGB_Full_Colour.jpg README.md etc \ org uk com net htsjdk picard gov joptsimple ngs freemarker LICENSE.Apache LICENSE.Picard LICENSE.JDBC LICENSE j2ssh.properties; \ echo "Main-Class: uk.ac.sanger.artemis.components.alignment.BamView" > manifest-bamview; \ echo "Permissions: all-permissions" >> manifest-bamview; \ jar cmf manifest-bamview ../bamview.jar META-INF/services etc org uk com net htsjdk picard gov joptsimple ngs freemarker LICENSE.Apache LICENSE.Picard LICENSE.JDBC LICENSE; \ echo "Main-Class: uk.ac.sanger.artemis.components.ActMain" > manifest-act; \ echo "Permissions: all-permissions" >> manifest-act; \ jar cmf manifest-act ../act.jar META-INF/services images/Wellcome_Sanger_Institute_Logo_Landscape_Digital_RGB_Full_Colour.jpg images/icon.gif README.md etc \ artemis_sqlmap org uk com net htsjdk picard gov joptsimple ngs freemarker LICENSE.Apache LICENSE.Picard LICENSE.JDBC LICENSE j2ssh.properties; \ rm -rf jar_build/build; gmake[1]: Leaving directory '/construction/biology/artemis/artemis-17.0.1-11-g3e43d27e' SUCCEEDED 00:02:15 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> artemis-17.0.1.11 depends on executable: bash - found ===> artemis-17.0.1.11 depends on file: /usr/local/openjdk8/bin/java - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for artemis-17.0.1.11 ===> artemis-17.0.1.11 depends on executable: bash - found ===> artemis-17.0.1.11 depends on file: /usr/local/openjdk8/bin/java - found ===> Generating temporary packing list install -m 555 /construction/biology/artemis/artemis-17.0.1-11-g3e43d27e/art /construction/biology/artemis/stage/usr/local/artemis-17.0.1.11/art install -m 555 /construction/biology/artemis/artemis-17.0.1-11-g3e43d27e/act /construction/biology/artemis/stage/usr/local/artemis-17.0.1.11/act install -m 555 /construction/biology/artemis/artemis-17.0.1-11-g3e43d27e/bamview /construction/biology/artemis/stage/usr/local/artemis-17.0.1.11/bamview install -m 555 /construction/biology/artemis/artemis-17.0.1-11-g3e43d27e/dnaplotter /construction/biology/artemis/stage/usr/local/artemis-17.0.1.11/dnaplotter ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for artemis-17.0.1.11 file sizes/checksums [124]: 0% file sizes/checksums [124]: 80% file sizes/checksums [124]: 100% packing files [124]: 0% packing files [124]: 80% packing files [124]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:01:08 TOTAL TIME 00:03:45